Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78419.t1 | XP_013465416.1 | 95.7 | 657 | 28 | 0 | 1 | 657 | 1 | 657 | 0.00E+00 | 1280.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78419.t1 | Q9XE58 | 38.7 | 763 | 344 | 14 | 7 | 657 | 17 | 767 | 4.0e-135 | 483.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78419.t1 | A0A072VCY3 | 95.7 | 657 | 28 | 0 | 1 | 657 | 1 | 657 | 0.0e+00 | 1280.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene78419.t1 | TF | GRAS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049181 | MS.gene78419 | 0.80919 | 2.14E-50 | -1.69E-46 |
| MS.gene049457 | MS.gene78419 | 0.805181 | 1.51E-49 | -1.69E-46 |
| MS.gene050363 | MS.gene78419 | 0.802038 | 6.78E-49 | -1.69E-46 |
| MS.gene050883 | MS.gene78419 | 0.80321 | 3.89E-49 | -1.69E-46 |
| MS.gene052090 | MS.gene78419 | 0.815809 | 7.64E-52 | -1.69E-46 |
| MS.gene052091 | MS.gene78419 | 0.903509 | 3.22E-79 | -1.69E-46 |
| MS.gene053932 | MS.gene78419 | 0.81221 | 4.75E-51 | -1.69E-46 |
| MS.gene055549 | MS.gene78419 | 0.830893 | 2.27E-55 | -1.69E-46 |
| MS.gene055550 | MS.gene78419 | 0.839931 | 1.18E-57 | -1.69E-46 |
| MS.gene055551 | MS.gene78419 | 0.859021 | 5.52E-63 | -1.69E-46 |
| MS.gene056408 | MS.gene78419 | 0.800023 | 1.75E-48 | -1.69E-46 |
| MS.gene058629 | MS.gene78419 | 0.814291 | 1.66E-51 | -1.69E-46 |
| MS.gene058630 | MS.gene78419 | 0.810842 | 9.43E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78419.t1 | MTR_2g097463 | 95.738 | 657 | 28 | 0 | 1 | 657 | 1 | 657 | 0.0 | 1300 |
| MS.gene78419.t1 | MTR_2g097473 | 80.822 | 657 | 125 | 1 | 1 | 657 | 1 | 656 | 0.0 | 1093 |
| MS.gene78419.t1 | MTR_2g097467 | 80.974 | 657 | 124 | 1 | 1 | 657 | 1 | 656 | 0.0 | 1088 |
| MS.gene78419.t1 | MTR_4g064200 | 57.870 | 629 | 205 | 11 | 47 | 657 | 66 | 652 | 0.0 | 685 |
| MS.gene78419.t1 | MTR_7g062120 | 43.275 | 684 | 317 | 13 | 41 | 657 | 63 | 742 | 1.54e-180 | 531 |
| MS.gene78419.t1 | MTR_4g064160 | 43.149 | 686 | 313 | 12 | 33 | 657 | 17 | 686 | 2.24e-177 | 521 |
| MS.gene78419.t1 | MTR_4g064120 | 44.888 | 626 | 289 | 14 | 55 | 657 | 36 | 628 | 1.14e-165 | 489 |
| MS.gene78419.t1 | MTR_4g064150 | 43.047 | 676 | 328 | 15 | 29 | 657 | 70 | 735 | 2.49e-163 | 486 |
| MS.gene78419.t1 | MTR_4g064180 | 44.409 | 626 | 292 | 14 | 55 | 657 | 36 | 628 | 5.07e-162 | 479 |
| MS.gene78419.t1 | MTR_2g097410 | 50.858 | 466 | 215 | 5 | 200 | 657 | 284 | 743 | 2.35e-160 | 479 |
| MS.gene78419.t1 | MTR_2g097310 | 46.437 | 435 | 215 | 7 | 230 | 657 | 217 | 640 | 3.02e-134 | 408 |
| MS.gene78419.t1 | MTR_2g097390 | 45.958 | 433 | 221 | 5 | 230 | 657 | 219 | 643 | 1.08e-133 | 407 |
| MS.gene78419.t1 | MTR_2g097350 | 45.517 | 435 | 220 | 6 | 230 | 657 | 218 | 642 | 3.42e-132 | 403 |
| MS.gene78419.t1 | MTR_2g097380 | 48.634 | 366 | 158 | 5 | 293 | 657 | 227 | 563 | 4.86e-120 | 369 |
| MS.gene78419.t1 | MTR_5g097480 | 32.172 | 373 | 247 | 5 | 286 | 654 | 173 | 543 | 1.37e-54 | 196 |
| MS.gene78419.t1 | MTR_2g026250 | 29.144 | 374 | 260 | 3 | 285 | 654 | 223 | 595 | 8.20e-54 | 194 |
| MS.gene78419.t1 | MTR_2g082090 | 32.172 | 373 | 247 | 5 | 286 | 654 | 208 | 578 | 5.14e-52 | 189 |
| MS.gene78419.t1 | MTR_4g133660 | 29.167 | 384 | 257 | 6 | 281 | 655 | 166 | 543 | 1.19e-51 | 187 |
| MS.gene78419.t1 | MTR_1g029420 | 27.989 | 368 | 261 | 2 | 290 | 654 | 225 | 591 | 2.60e-48 | 179 |
| MS.gene78419.t1 | MTR_7g027190 | 27.949 | 390 | 249 | 4 | 285 | 654 | 295 | 672 | 5.27e-48 | 179 |
| MS.gene78419.t1 | MTR_3g089055 | 29.111 | 371 | 253 | 6 | 290 | 654 | 198 | 564 | 1.55e-47 | 176 |
| MS.gene78419.t1 | MTR_3g089055 | 29.111 | 371 | 253 | 6 | 290 | 654 | 203 | 569 | 1.72e-47 | 176 |
| MS.gene78419.t1 | MTR_3g056110 | 29.333 | 375 | 255 | 5 | 286 | 654 | 171 | 541 | 2.52e-47 | 175 |
| MS.gene78419.t1 | MTR_8g442410 | 28.941 | 387 | 246 | 6 | 285 | 654 | 150 | 524 | 4.21e-46 | 172 |
| MS.gene78419.t1 | MTR_5g094450 | 29.815 | 379 | 252 | 8 | 286 | 654 | 157 | 531 | 4.80e-46 | 171 |
| MS.gene78419.t1 | MTR_4g104020 | 27.792 | 385 | 250 | 7 | 287 | 654 | 146 | 519 | 3.93e-44 | 166 |
| MS.gene78419.t1 | MTR_7g074650 | 29.620 | 368 | 240 | 7 | 293 | 656 | 441 | 793 | 1.01e-42 | 165 |
| MS.gene78419.t1 | MTR_3g065980 | 28.535 | 389 | 247 | 7 | 283 | 654 | 165 | 539 | 3.34e-42 | 161 |
| MS.gene78419.t1 | MTR_2g034260 | 28.021 | 389 | 251 | 10 | 285 | 654 | 205 | 583 | 1.67e-37 | 148 |
| MS.gene78419.t1 | MTR_4g102790 | 24.352 | 386 | 267 | 9 | 286 | 656 | 288 | 663 | 7.84e-37 | 147 |
| MS.gene78419.t1 | MTR_4g076140 | 25.995 | 427 | 248 | 6 | 290 | 654 | 48 | 468 | 1.84e-36 | 143 |
| MS.gene78419.t1 | MTR_2g034250 | 27.411 | 394 | 248 | 10 | 285 | 654 | 205 | 584 | 4.91e-36 | 143 |
| MS.gene78419.t1 | MTR_3g022830 | 26.859 | 417 | 245 | 7 | 291 | 654 | 26 | 435 | 5.36e-36 | 141 |
| MS.gene78419.t1 | MTR_4g076020 | 26.790 | 377 | 232 | 9 | 293 | 657 | 87 | 431 | 2.60e-33 | 133 |
| MS.gene78419.t1 | MTR_2g089100 | 27.861 | 402 | 248 | 11 | 290 | 657 | 52 | 445 | 4.95e-33 | 132 |
| MS.gene78419.t1 | MTR_4g077760 | 25.729 | 377 | 259 | 7 | 287 | 654 | 190 | 554 | 2.46e-32 | 132 |
| MS.gene78419.t1 | MTR_1g096030 | 27.273 | 396 | 246 | 11 | 287 | 654 | 77 | 458 | 1.22e-30 | 125 |
| MS.gene78419.t1 | MTR_4g097080 | 23.873 | 377 | 272 | 7 | 290 | 656 | 133 | 504 | 2.59e-30 | 125 |
| MS.gene78419.t1 | MTR_2g034280 | 25.191 | 393 | 255 | 10 | 285 | 654 | 198 | 574 | 6.13e-30 | 125 |
| MS.gene78419.t1 | MTR_5g015490 | 25.197 | 381 | 268 | 7 | 290 | 656 | 114 | 491 | 4.97e-29 | 121 |
| MS.gene78419.t1 | MTR_7g109580 | 26.753 | 385 | 252 | 10 | 285 | 654 | 184 | 553 | 6.34e-29 | 122 |
| MS.gene78419.t1 | MTR_1g069725 | 26.649 | 379 | 251 | 13 | 285 | 655 | 104 | 463 | 1.29e-27 | 117 |
| MS.gene78419.t1 | MTR_3g072710 | 30.677 | 251 | 152 | 7 | 356 | 596 | 204 | 442 | 2.41e-27 | 116 |
| MS.gene78419.t1 | MTR_7g057230 | 28.137 | 263 | 179 | 5 | 394 | 654 | 402 | 656 | 9.73e-25 | 109 |
| MS.gene78419.t1 | MTR_5g009080 | 30.622 | 209 | 135 | 3 | 290 | 494 | 56 | 258 | 1.70e-24 | 107 |
| MS.gene78419.t1 | MTR_5g009080 | 28.859 | 149 | 106 | 0 | 506 | 654 | 329 | 477 | 6.01e-15 | 78.2 |
| MS.gene78419.t1 | MTR_1g086970 | 22.843 | 394 | 263 | 10 | 285 | 654 | 101 | 477 | 1.27e-23 | 105 |
| MS.gene78419.t1 | MTR_5g015950 | 22.482 | 427 | 277 | 10 | 280 | 657 | 27 | 448 | 3.42e-23 | 103 |
| MS.gene78419.t1 | MTR_3g053270 | 22.482 | 427 | 277 | 10 | 280 | 657 | 27 | 448 | 3.42e-23 | 103 |
| MS.gene78419.t1 | MTR_6g047750 | 26.715 | 277 | 185 | 6 | 387 | 654 | 394 | 661 | 3.74e-23 | 104 |
| MS.gene78419.t1 | MTR_5g058860 | 24.791 | 359 | 240 | 11 | 317 | 655 | 149 | 497 | 3.90e-23 | 103 |
| MS.gene78419.t1 | MTR_4g095500 | 22.837 | 416 | 269 | 9 | 290 | 657 | 59 | 470 | 1.29e-21 | 99.0 |
| MS.gene78419.t1 | MTR_2g099110 | 25.281 | 356 | 232 | 10 | 290 | 624 | 74 | 416 | 3.66e-21 | 97.4 |
| MS.gene78419.t1 | MTR_8g093070 | 23.276 | 464 | 291 | 20 | 234 | 657 | 60 | 498 | 5.68e-21 | 97.4 |
| MS.gene78419.t1 | MTR_0092s0100 | 21.739 | 368 | 271 | 6 | 291 | 654 | 376 | 730 | 4.03e-14 | 76.3 |
| MS.gene78419.t1 | MTR_0092s0100 | 21.739 | 368 | 271 | 6 | 291 | 654 | 373 | 727 | 4.16e-14 | 76.3 |
| MS.gene78419.t1 | MTR_4g026485 | 19.950 | 401 | 286 | 12 | 268 | 654 | 244 | 623 | 1.44e-12 | 71.2 |
| MS.gene78419.t1 | MTR_8g020840 | 21.446 | 401 | 255 | 12 | 290 | 654 | 171 | 547 | 7.24e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78419.t1 | AT2G37650 | 42.331 | 652 | 317 | 13 | 50 | 656 | 65 | 702 | 1.26e-163 | 486 |
| MS.gene78419.t1 | AT2G29060 | 44.888 | 626 | 301 | 16 | 50 | 656 | 56 | 656 | 1.27e-163 | 484 |
| MS.gene78419.t1 | AT2G37650 | 42.331 | 652 | 317 | 13 | 50 | 656 | 77 | 714 | 1.45e-163 | 486 |
| MS.gene78419.t1 | AT2G29060 | 43.586 | 647 | 316 | 16 | 50 | 656 | 56 | 693 | 3.06e-160 | 477 |
| MS.gene78419.t1 | AT1G07530 | 48.932 | 468 | 224 | 4 | 202 | 657 | 303 | 767 | 5.79e-159 | 476 |
| MS.gene78419.t1 | AT5G59450 | 45.094 | 530 | 265 | 7 | 153 | 657 | 72 | 600 | 1.44e-158 | 470 |
| MS.gene78419.t1 | AT3G46600 | 50.000 | 452 | 199 | 7 | 216 | 657 | 115 | 549 | 5.64e-148 | 441 |
| MS.gene78419.t1 | AT3G46600 | 50.000 | 452 | 199 | 7 | 216 | 657 | 147 | 581 | 7.49e-148 | 441 |
| MS.gene78419.t1 | AT2G29065 | 42.319 | 664 | 312 | 22 | 22 | 657 | 10 | 630 | 6.55e-145 | 436 |
| MS.gene78419.t1 | AT3G46600 | 54.570 | 372 | 163 | 2 | 290 | 657 | 4 | 373 | 3.88e-144 | 424 |
| MS.gene78419.t1 | AT1G07520 | 46.281 | 484 | 241 | 9 | 184 | 657 | 57 | 531 | 1.17e-137 | 413 |
| MS.gene78419.t1 | AT1G07520 | 46.281 | 484 | 241 | 9 | 184 | 657 | 57 | 531 | 1.17e-137 | 413 |
| MS.gene78419.t1 | AT1G07520 | 46.281 | 484 | 241 | 9 | 184 | 657 | 222 | 696 | 4.59e-136 | 415 |
| MS.gene78419.t1 | AT1G07520 | 46.281 | 484 | 241 | 9 | 184 | 657 | 221 | 695 | 5.29e-136 | 415 |
| MS.gene78419.t1 | AT1G50600 | 32.796 | 372 | 246 | 3 | 286 | 654 | 155 | 525 | 7.06e-54 | 193 |
| MS.gene78419.t1 | AT1G50600 | 32.796 | 372 | 246 | 3 | 286 | 654 | 226 | 596 | 2.46e-53 | 193 |
| MS.gene78419.t1 | AT1G50600 | 32.796 | 372 | 246 | 3 | 286 | 654 | 230 | 600 | 2.87e-53 | 193 |
| MS.gene78419.t1 | AT5G48150 | 30.105 | 382 | 262 | 3 | 277 | 654 | 109 | 489 | 1.94e-52 | 188 |
| MS.gene78419.t1 | AT5G48150 | 30.105 | 382 | 262 | 3 | 277 | 654 | 109 | 489 | 1.94e-52 | 188 |
| MS.gene78419.t1 | AT5G48150 | 30.105 | 382 | 262 | 3 | 277 | 654 | 109 | 489 | 1.94e-52 | 188 |
| MS.gene78419.t1 | AT5G48150 | 30.105 | 382 | 262 | 3 | 277 | 654 | 109 | 489 | 1.94e-52 | 188 |
| MS.gene78419.t1 | AT2G04890 | 29.839 | 372 | 250 | 4 | 286 | 654 | 49 | 412 | 4.49e-49 | 177 |
| MS.gene78419.t1 | AT4G17230 | 29.600 | 375 | 260 | 2 | 285 | 656 | 153 | 526 | 7.66e-47 | 174 |
| MS.gene78419.t1 | AT4G17230 | 29.600 | 375 | 260 | 2 | 285 | 656 | 153 | 526 | 7.66e-47 | 174 |
| MS.gene78419.t1 | AT1G21450 | 27.873 | 409 | 279 | 6 | 252 | 654 | 194 | 592 | 2.49e-45 | 171 |
| MS.gene78419.t1 | AT3G54220 | 31.283 | 374 | 229 | 11 | 293 | 656 | 296 | 651 | 3.28e-43 | 165 |
| MS.gene78419.t1 | AT3G03450 | 29.231 | 390 | 237 | 9 | 283 | 654 | 176 | 544 | 2.11e-42 | 161 |
| MS.gene78419.t1 | AT1G66350 | 29.902 | 408 | 242 | 13 | 265 | 654 | 124 | 505 | 4.61e-41 | 157 |
| MS.gene78419.t1 | AT5G17490 | 27.546 | 432 | 288 | 9 | 231 | 654 | 101 | 515 | 8.21e-41 | 156 |
| MS.gene78419.t1 | AT1G14920 | 28.877 | 374 | 250 | 9 | 285 | 654 | 167 | 528 | 3.07e-40 | 155 |
| MS.gene78419.t1 | AT5G66770 | 27.346 | 373 | 260 | 7 | 287 | 654 | 217 | 583 | 2.99e-39 | 153 |
| MS.gene78419.t1 | AT1G50420 | 24.654 | 434 | 252 | 6 | 287 | 654 | 54 | 478 | 6.71e-38 | 147 |
| MS.gene78419.t1 | AT2G01570 | 27.273 | 374 | 256 | 9 | 285 | 654 | 219 | 580 | 8.83e-37 | 145 |
| MS.gene78419.t1 | AT5G41920 | 26.546 | 388 | 251 | 8 | 280 | 654 | 33 | 399 | 2.41e-36 | 141 |
| MS.gene78419.t1 | AT1G63100 | 26.879 | 346 | 236 | 6 | 286 | 623 | 273 | 609 | 2.88e-33 | 136 |
| MS.gene78419.t1 | AT1G63100 | 26.879 | 346 | 236 | 6 | 286 | 623 | 248 | 584 | 3.03e-33 | 135 |
| MS.gene78419.t1 | AT4G37650 | 25.255 | 392 | 263 | 8 | 289 | 656 | 145 | 530 | 7.84e-33 | 133 |
| MS.gene78419.t1 | AT3G50650 | 25.070 | 355 | 252 | 5 | 308 | 654 | 193 | 541 | 1.03e-32 | 133 |
| MS.gene78419.t1 | AT4G08250 | 28.846 | 364 | 234 | 13 | 306 | 655 | 125 | 477 | 2.24e-30 | 125 |
| MS.gene78419.t1 | AT3G49950 | 26.823 | 384 | 260 | 9 | 290 | 656 | 30 | 409 | 1.34e-29 | 122 |
| MS.gene78419.t1 | AT5G52510 | 25.197 | 381 | 258 | 10 | 291 | 654 | 269 | 639 | 1.41e-28 | 121 |
| MS.gene78419.t1 | AT1G55580 | 24.289 | 387 | 227 | 10 | 319 | 654 | 73 | 444 | 1.36e-23 | 104 |
| MS.gene78419.t1 | AT3G13840 | 22.272 | 449 | 289 | 18 | 234 | 654 | 93 | 509 | 5.14e-16 | 82.0 |
| MS.gene78419.t1 | AT4G00150 | 21.907 | 388 | 256 | 11 | 281 | 654 | 199 | 553 | 5.58e-11 | 65.9 |
Find 139 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAAGTTCCATTCTGAAAA+TGG | 0.191218 | 2.3:+5565621 | None:intergenic |
| CATCGACTACAAAATCTTTA+TGG | 0.219672 | 2.3:+5564262 | None:intergenic |
| CCTGACCTGCCATTGCTTGT+AGG | 0.253220 | 2.3:+5564365 | None:intergenic |
| AGTGTTCATATTATTGATTT+TGG | 0.276562 | 2.3:-5564969 | MS.gene78419:CDS |
| AGGCAACACTCTTCGCCTTT+TGG | 0.276975 | 2.3:-5565200 | MS.gene78419:CDS |
| AAATCCTTCTATGATGTTCT+TGG | 0.287117 | 2.3:-5565881 | MS.gene78419:CDS |
| AATATCTATCCGCTGCATAC+TGG | 0.310714 | 2.3:+5566011 | None:intergenic |
| TTCCTTCTTCACCATTGCTT+TGG | 0.317965 | 2.3:+5564287 | None:intergenic |
| CACTAAGCTGTAAATTGTAT+TGG | 0.330543 | 2.3:+5565004 | None:intergenic |
| TTTGAATGCTTTATCTGCTT+GGG | 0.335112 | 2.3:-5564199 | MS.gene78419:CDS |
| TTTACATGGTTCAATGAGTT+AGG | 0.345834 | 2.3:+5566100 | None:intergenic |
| CCCGTAATTCGAAGCTTTGC+AGG | 0.346583 | 2.3:+5564885 | None:intergenic |
| CGAATTTGACTCTTCCTACT+TGG | 0.356470 | 2.3:-5565726 | MS.gene78419:CDS |
| GTTTCCTCTGCCCTTTCTGC+AGG | 0.358323 | 2.3:+5564834 | None:intergenic |
| AGCTTCCTCAGCCTGGATTT+AGG | 0.360422 | 2.3:-5564857 | MS.gene78419:CDS |
| TTAGCTCATTACTTTGCTAA+TGG | 0.365209 | 2.3:-5565161 | MS.gene78419:CDS |
| ACAACTGCATTGCACAGAAA+TGG | 0.365582 | 2.3:-5564761 | MS.gene78419:CDS |
| GCATCACATAATGTTGATTC+AGG | 0.366614 | 2.3:-5565374 | MS.gene78419:CDS |
| CTCTCAAGCATCAGCCTTTG+CGG | 0.367574 | 2.3:+5564459 | None:intergenic |
| ACTGACCTAGACGGGAATTT+CGG | 0.371536 | 2.3:-5565830 | MS.gene78419:CDS |
| TTGGATTAATCTTCCTGATC+AGG | 0.372735 | 2.3:+5564610 | None:intergenic |
| GCAGAAAGGGCAGAGGAAAC+TGG | 0.381946 | 2.3:-5564831 | MS.gene78419:CDS |
| TCCTGCAAAGCTTCGAATTA+CGG | 0.385651 | 2.3:-5564886 | MS.gene78419:CDS |
| TCTGATTCGGTTAACCTTGT+TGG | 0.387152 | 2.3:-5565749 | MS.gene78419:CDS |
| CCTGCAAAGCTTCGAATTAC+GGG | 0.388387 | 2.3:-5564885 | MS.gene78419:CDS |
| TCTCAAGCATCAGCCTTTGC+GGG | 0.391520 | 2.3:+5564460 | None:intergenic |
| ATATCTATCCGCTGCATACT+GGG | 0.409483 | 2.3:+5566012 | None:intergenic |
| GAGCTAGGTTCAAGCAAATC+AGG | 0.411714 | 2.3:-5564335 | MS.gene78419:CDS |
| TTCTTCCATGGAGTTGTCAA+TGG | 0.415847 | 2.3:-5564582 | MS.gene78419:CDS |
| ATGCTTGAGAGAGGGTTGTT+TGG | 0.419092 | 2.3:-5564447 | MS.gene78419:CDS |
| TGCCATTGCTTGTAGGTCTC+AGG | 0.423545 | 2.3:+5564372 | None:intergenic |
| GCGCGAACCCTGTATGTTGC+AGG | 0.425296 | 2.3:-5565930 | MS.gene78419:CDS |
| CAACATTATGTGATGCTTGT+TGG | 0.426130 | 2.3:+5565381 | None:intergenic |
| TTAGTAGAGCAAAACTACTA+TGG | 0.426979 | 2.3:-5565689 | MS.gene78419:CDS |
| TAAACATTCCTGCAACATAC+AGG | 0.427192 | 2.3:+5565922 | None:intergenic |
| AAATCTTGCAGAAAGGTGTT+AGG | 0.427722 | 2.3:+5566130 | None:intergenic |
| ATGAGCTACTCAAGCAGATT+AGG | 0.437525 | 2.3:-5565220 | MS.gene78419:CDS |
| ATCGTTGTTTGATATGTTTG+AGG | 0.437931 | 2.3:-5564502 | MS.gene78419:CDS |
| CACAGAAATGGGAAACTATC+CGG | 0.438062 | 2.3:-5564749 | MS.gene78419:CDS |
| CAACTGCATTGCACAGAAAT+GGG | 0.438307 | 2.3:-5564760 | MS.gene78419:CDS |
| CCTACAAGCAATGGCAGGTC+AGG | 0.440693 | 2.3:-5564365 | MS.gene78419:CDS |
| AAGCATTGTTGAACCTGATC+AGG | 0.443595 | 2.3:-5564623 | MS.gene78419:CDS |
| CGGCATATACGATGGAATCT+TGG | 0.450257 | 2.3:+5565118 | None:intergenic |
| TGCTCAATGACCACTGGATC+AGG | 0.456975 | 2.3:+5565656 | None:intergenic |
| GGAATTGAGCTTCCTCAGCC+TGG | 0.457931 | 2.3:-5564864 | MS.gene78419:CDS |
| AGGTTCAACAATGCTTCTCT+TGG | 0.460604 | 2.3:+5564630 | None:intergenic |
| TAATGTTGATTCAGGAGAAA+AGG | 0.463896 | 2.3:-5565366 | MS.gene78419:CDS |
| ATGGCCAAGAACATCATAGA+AGG | 0.465584 | 2.3:+5565877 | None:intergenic |
| CATGGATGAAGAAGATGACT+TGG | 0.465816 | 2.3:-5565954 | MS.gene78419:CDS |
| GTGCTTCCCTAAACCGAGTC+AGG | 0.469223 | 2.3:+5564538 | None:intergenic |
| TGGATTTAGGCCTGCAGAAA+GGG | 0.470014 | 2.3:-5564844 | MS.gene78419:CDS |
| TTGAGAGAGGGTTGTTTGGA+AGG | 0.472118 | 2.3:-5564443 | MS.gene78419:CDS |
| AACTCAATGTGCACAGGCCG+TGG | 0.475370 | 2.3:-5565267 | MS.gene78419:CDS |
| TTCACTGCTACAGTTTCATC+AGG | 0.476635 | 2.3:+5564657 | None:intergenic |
| TTCAGAATGGAACTTGGAGT+TGG | 0.478676 | 2.3:-5565616 | MS.gene78419:CDS |
| TAGTCGATGTCGATGGTAAG+TGG | 0.481602 | 2.3:-5564248 | MS.gene78419:CDS |
| ATGCCACAGTTGTGGATTTG+TGG | 0.483676 | 2.3:-5565298 | MS.gene78419:CDS |
| CTGCTACAGTTTCATCAGGC+AGG | 0.484383 | 2.3:+5564661 | None:intergenic |
| TAATTCATGTGAGTCTGATT+CGG | 0.485201 | 2.3:-5565762 | MS.gene78419:CDS |
| TACTTCTTTGTCAGCAAGGA+AGG | 0.488696 | 2.3:-5565418 | MS.gene78419:CDS |
| AGCAATGGCAGGTCAGGAAC+AGG | 0.489352 | 2.3:-5564359 | MS.gene78419:CDS |
| AGTACCTCATCTAAGATCTC+TGG | 0.492137 | 2.3:+5565437 | None:intergenic |
| CTTTCTGCAGGCCTAAATCC+AGG | 0.496223 | 2.3:+5564846 | None:intergenic |
| CGAAGCTTTGCAGGACCACC+AGG | 0.497005 | 2.3:+5564894 | None:intergenic |
| CCGCTTGATGTAGTAACTGC+TGG | 0.498718 | 2.3:-5565098 | MS.gene78419:CDS |
| AACCAAAGCAATGGTGAAGA+AGG | 0.500696 | 2.3:-5564289 | MS.gene78419:CDS |
| AGCTTGTGAGGGTGCGGAGA+GGG | 0.504460 | 2.3:-5564403 | MS.gene78419:CDS |
| TCTAGGTCAGTGCTATCATC+TGG | 0.509668 | 2.3:+5565842 | None:intergenic |
| CTCTGAAGTCCATCCCCAAA+AGG | 0.511649 | 2.3:+5565185 | None:intergenic |
| CTGGATTTAGGCCTGCAGAA+AGG | 0.513894 | 2.3:-5564845 | MS.gene78419:CDS |
| AGGTCAGGAACAGGAGAGCT+AGG | 0.516508 | 2.3:-5564350 | MS.gene78419:CDS |
| TATGTATCTGAGGAATGGAT+TGG | 0.516557 | 2.3:+5565988 | None:intergenic |
| CATCTGGTGAAGGATTGTTA+TGG | 0.519640 | 2.3:+5565858 | None:intergenic |
| TCGAGGATCTAAAGATAGAC+AGG | 0.520782 | 2.3:-5564725 | MS.gene78419:CDS |
| AGCCTTTGCGGGTCTTCGCA+AGG | 0.523484 | 2.3:+5564471 | None:intergenic |
| AGGAGTTTGTAGTTCCAAGT+AGG | 0.525291 | 2.3:+5565712 | None:intergenic |
| GAAACCTCTTCAACCATCAC+TGG | 0.530579 | 2.3:+5565581 | None:intergenic |
| TCTGAGCTTATGACAGAAGA+AGG | 0.531044 | 2.3:+5566043 | None:intergenic |
| ATGATAGCACTGACCTAGAC+GGG | 0.531383 | 2.3:-5565838 | MS.gene78419:CDS |
| CCTTTGATCGTAGCTTGCCA+CGG | 0.533325 | 2.3:+5565250 | None:intergenic |
| CCGTGGCAAGCTACGATCAA+AGG | 0.538969 | 2.3:-5565250 | MS.gene78419:CDS |
| GCTTGTTGCTCAATGACCAC+TGG | 0.538979 | 2.3:+5565650 | None:intergenic |
| TGAGAGAGGGTTGTTTGGAA+GGG | 0.539295 | 2.3:-5564442 | MS.gene78419:CDS |
| AACACTAAAATCTTGCAGAA+AGG | 0.548523 | 2.3:+5566123 | None:intergenic |
| TCACTTATGTATCTGAGGAA+TGG | 0.548559 | 2.3:+5565983 | None:intergenic |
| TACAAACAATGCCACAGTTG+TGG | 0.553896 | 2.3:-5565306 | MS.gene78419:CDS |
| TCAGCCAGTGATGGTTGAAG+AGG | 0.554665 | 2.3:-5565585 | MS.gene78419:CDS |
| GCAATGCAGTTGTATTCAAA+TGG | 0.559815 | 2.3:+5564771 | None:intergenic |
| TGCCTTGCGAAGACCCGCAA+AGG | 0.561465 | 2.3:-5564473 | MS.gene78419:CDS |
| TGTTATAGCTTGTGAGGGTG+CGG | 0.569313 | 2.3:-5564409 | MS.gene78419:CDS |
| AGAAAAGAGAAGTCATGCGA+TGG | 0.571863 | 2.3:-5565540 | MS.gene78419:CDS |
| GAATCAAATTCAGCCAGTGA+TGG | 0.572156 | 2.3:-5565594 | MS.gene78419:CDS |
| ATACATAAGTGACATCCTCA+TGG | 0.582153 | 2.3:-5565972 | MS.gene78419:CDS |
| AACTTCCATTGACAACTCCA+TGG | 0.582257 | 2.3:+5564577 | None:intergenic |
| TATCAAACAACGATGAGAAG+TGG | 0.582630 | 2.3:+5564511 | None:intergenic |
| GAATTTGCTACGGTTTCCAG+TGG | 0.587108 | 2.3:-5564947 | MS.gene78419:CDS |
| TGAGACCTACAAGCAATGGC+AGG | 0.588661 | 2.3:-5564370 | MS.gene78419:CDS |
| GGCCTGAGACCTACAAGCAA+TGG | 0.588665 | 2.3:-5564374 | MS.gene78419:CDS |
| TGCGACCGAAATTCCCGTCT+AGG | 0.589490 | 2.3:+5565825 | None:intergenic |
| AGTAATGTACAAGAGGGAAG+AGG | 0.589556 | 2.3:-5565500 | MS.gene78419:CDS |
| ATATTCGTCATTCTCTGCAA+AGG | 0.596904 | 2.3:+5565035 | None:intergenic |
| TATAAATGTTATAGCTTGTG+AGG | 0.597621 | 2.3:-5564415 | MS.gene78419:CDS |
| GATGATAGCACTGACCTAGA+CGG | 0.598578 | 2.3:-5565839 | MS.gene78419:CDS |
| CAAAGGCTGATGCTTGAGAG+AGG | 0.599769 | 2.3:-5564456 | MS.gene78419:CDS |
| TCTTGCAGAAAGGTGTTAGG+AGG | 0.601548 | 2.3:+5566133 | None:intergenic |
| AGTCGATGTCGATGGTAAGT+GGG | 0.601905 | 2.3:-5564247 | MS.gene78419:CDS |
| AAGAGTCAAATTCGCCAACA+AGG | 0.602536 | 2.3:+5565735 | None:intergenic |
| AAACATTCCTGCAACATACA+GGG | 0.603139 | 2.3:+5565923 | None:intergenic |
| TGATACTAGTAATGTACAAG+AGG | 0.603561 | 2.3:-5565507 | MS.gene78419:CDS |
| AGTGAATGAAACCAAAGCAA+TGG | 0.607650 | 2.3:-5564298 | MS.gene78419:CDS |
| AGGGTGCGGAGAGGGTCGAA+AGG | 0.608738 | 2.3:-5564395 | MS.gene78419:CDS |
| CTATCTTTAGATCCTCGAGC+CGG | 0.610122 | 2.3:+5564730 | None:intergenic |
| GAGGTACTTCTTTGTCAGCA+AGG | 0.610885 | 2.3:-5565422 | MS.gene78419:CDS |
| TATGCTAACTCAATGTGCAC+AGG | 0.610937 | 2.3:-5565273 | MS.gene78419:CDS |
| TAGGTTCAAGCAAATCAGGT+TGG | 0.612445 | 2.3:-5564331 | MS.gene78419:CDS |
| CATTCTCTGCAAAGGAGATG+AGG | 0.613851 | 2.3:+5565043 | None:intergenic |
| ACCTCATCTAAGATCTCTGG+TGG | 0.614764 | 2.3:+5565440 | None:intergenic |
| CCAGCAGTTACTACATCAAG+CGG | 0.615147 | 2.3:+5565098 | None:intergenic |
| GCAGGCCTAAATCCAGGCTG+AGG | 0.617274 | 2.3:+5564852 | None:intergenic |
| TAGGCCTGCAGAAAGGGCAG+AGG | 0.619921 | 2.3:-5564838 | MS.gene78419:CDS |
| AAAGGTGTTAGGAGGAAGCA+TGG | 0.620147 | 2.3:+5566141 | None:intergenic |
| GGATGTCACTTATGTATCTG+AGG | 0.623191 | 2.3:+5565978 | None:intergenic |
| TATCTATCCGCTGCATACTG+GGG | 0.630170 | 2.3:+5566013 | None:intergenic |
| AAAGGCTGATGCTTGAGAGA+GGG | 0.635382 | 2.3:-5564455 | MS.gene78419:CDS |
| ATGGGAAACTATCCGGCTCG+AGG | 0.640423 | 2.3:-5564742 | MS.gene78419:CDS |
| GATACTAGTAATGTACAAGA+GGG | 0.642852 | 2.3:-5565506 | MS.gene78419:CDS |
| TAGCTTGTGAGGGTGCGGAG+AGG | 0.646388 | 2.3:-5564404 | MS.gene78419:CDS |
| TCAGTGCTATCATCTGGTGA+AGG | 0.648298 | 2.3:+5565848 | None:intergenic |
| ACATCAAGCGGCATATACGA+TGG | 0.651925 | 2.3:+5565110 | None:intergenic |
| ATAAATGTTATAGCTTGTGA+GGG | 0.673348 | 2.3:-5564414 | MS.gene78419:CDS |
| AAACTTTCAATGAGACCTGG+TGG | 0.675722 | 2.3:-5564909 | MS.gene78419:CDS |
| TGATTCAGGAGAAAAGGCAA+AGG | 0.678314 | 2.3:-5565360 | MS.gene78419:CDS |
| AGACTCACATGAATTATCAG+TGG | 0.680494 | 2.3:+5565769 | None:intergenic |
| TGAAGATCCCCAGTATGCAG+CGG | 0.681546 | 2.3:-5566020 | MS.gene78419:CDS |
| AAAGGGCAGAGGAAACTGGA+AGG | 0.686895 | 2.3:-5564827 | MS.gene78419:CDS |
| AGTCATCTTCTTCATCCATG+AGG | 0.688746 | 2.3:+5565957 | None:intergenic |
| ACCACCAGAGATCTTAGATG+AGG | 0.690503 | 2.3:-5565441 | MS.gene78419:CDS |
| TGTGACACAACCTGATCCAG+TGG | 0.724133 | 2.3:-5565666 | MS.gene78419:CDS |
| AGTCCACAAATCCACAACTG+TGG | 0.729336 | 2.3:+5565295 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTGTTCATATTATTGATTT+TGG | - | chr2.3:5565358-5565377 | MS.gene78419:CDS | 20.0% |
| ! | CATTGAACCATGTAAAAAAT+GGG | - | chr2.3:5564234-5564253 | MS.gene78419:CDS | 25.0% |
| ! | TCATTGAACCATGTAAAAAA+TGG | - | chr2.3:5564233-5564252 | MS.gene78419:CDS | 25.0% |
| !! | ATAAATGTTATAGCTTGTGA+GGG | - | chr2.3:5565913-5565932 | MS.gene78419:CDS | 25.0% |
| !! | TATAAATGTTATAGCTTGTG+AGG | - | chr2.3:5565912-5565931 | MS.gene78419:CDS | 25.0% |
| !!! | ATTGATTTTGGAATTTGCTA+CGG | - | chr2.3:5565370-5565389 | MS.gene78419:CDS | 25.0% |
| !!! | TCATTGAAAGTTTTTTGATG+AGG | + | chr2.3:5565411-5565430 | None:intergenic | 25.0% |
| AAAAAACTTTCAATGAGACC+TGG | - | chr2.3:5565415-5565434 | MS.gene78419:CDS | 30.0% | |
| AAATCCTTCTATGATGTTCT+TGG | - | chr2.3:5564446-5564465 | MS.gene78419:CDS | 30.0% | |
| AACACTAAAATCTTGCAGAA+AGG | + | chr2.3:5564207-5564226 | None:intergenic | 30.0% | |
| AATCCAAAAATCTTCTTCCA+TGG | - | chr2.3:5565733-5565752 | MS.gene78419:CDS | 30.0% | |
| ATCGTTGTTTGATATGTTTG+AGG | - | chr2.3:5565825-5565844 | MS.gene78419:CDS | 30.0% | |
| CACTAAGCTGTAAATTGTAT+TGG | + | chr2.3:5565326-5565345 | None:intergenic | 30.0% | |
| GATACTAGTAATGTACAAGA+GGG | - | chr2.3:5564821-5564840 | MS.gene78419:CDS | 30.0% | |
| TAATTCATGTGAGTCTGATT+CGG | - | chr2.3:5564565-5564584 | MS.gene78419:CDS | 30.0% | |
| TGATACTAGTAATGTACAAG+AGG | - | chr2.3:5564820-5564839 | MS.gene78419:CDS | 30.0% | |
| TTAGCTCATTACTTTGCTAA+TGG | - | chr2.3:5565166-5565185 | MS.gene78419:CDS | 30.0% | |
| TTAGTAGAGCAAAACTACTA+TGG | - | chr2.3:5564638-5564657 | MS.gene78419:CDS | 30.0% | |
| TTTACATGGTTCAATGAGTT+AGG | + | chr2.3:5564230-5564249 | None:intergenic | 30.0% | |
| TTTGAATGCTTTATCTGCTT+GGG | - | chr2.3:5566128-5566147 | MS.gene78419:CDS | 30.0% | |
| ! | CATCGACTACAAAATCTTTA+TGG | + | chr2.3:5566068-5566087 | None:intergenic | 30.0% |
| ! | TGTAAAAAATGGGTTTGAGT+TGG | - | chr2.3:5564244-5564263 | MS.gene78419:CDS | 30.0% |
| ! | TTTTGAATGCTTTATCTGCT+TGG | - | chr2.3:5566127-5566146 | MS.gene78419:CDS | 30.0% |
| !! | TAATGTTGATTCAGGAGAAA+AGG | - | chr2.3:5564961-5564980 | MS.gene78419:CDS | 30.0% |
| !! | TAGTAGTTTTGCTCTACTAA+AGG | + | chr2.3:5564638-5564657 | None:intergenic | 30.0% |
| !!! | ACTCAAACCCATTTTTTACA+TGG | + | chr2.3:5564244-5564263 | None:intergenic | 30.0% |
| AAACATTCCTGCAACATACA+GGG | + | chr2.3:5564407-5564426 | None:intergenic | 35.0% | |
| AGACTCACATGAATTATCAG+TGG | + | chr2.3:5564561-5564580 | None:intergenic | 35.0% | |
| AGTGAATGAAACCAAAGCAA+TGG | - | chr2.3:5566029-5566048 | MS.gene78419:CDS | 35.0% | |
| ATACATAAGTGACATCCTCA+TGG | - | chr2.3:5564355-5564374 | MS.gene78419:CDS | 35.0% | |
| ATATTCGTCATTCTCTGCAA+AGG | + | chr2.3:5565295-5565314 | None:intergenic | 35.0% | |
| CAACATTATGTGATGCTTGT+TGG | + | chr2.3:5564949-5564968 | None:intergenic | 35.0% | |
| GCAATGCAGTTGTATTCAAA+TGG | + | chr2.3:5565559-5565578 | None:intergenic | 35.0% | |
| TAAACATTCCTGCAACATAC+AGG | + | chr2.3:5564408-5564427 | None:intergenic | 35.0% | |
| TATCAAACAACGATGAGAAG+TGG | + | chr2.3:5565819-5565838 | None:intergenic | 35.0% | |
| TATGTATCTGAGGAATGGAT+TGG | + | chr2.3:5564342-5564361 | None:intergenic | 35.0% | |
| TCACTTATGTATCTGAGGAA+TGG | + | chr2.3:5564347-5564366 | None:intergenic | 35.0% | |
| TTGGATTAATCTTCCTGATC+AGG | + | chr2.3:5565720-5565739 | None:intergenic | 35.0% | |
| ! | ACCATTTTCAGAATGGAACT+TGG | - | chr2.3:5564705-5564724 | MS.gene78419:CDS | 35.0% |
| ! | ACTCCATGGAAGAAGATTTT+TGG | + | chr2.3:5565739-5565758 | None:intergenic | 35.0% |
| ! | TCCAAGTTCCATTCTGAAAA+TGG | + | chr2.3:5564709-5564728 | None:intergenic | 35.0% |
| !! | AAATCTTGCAGAAAGGTGTT+AGG | + | chr2.3:5564200-5564219 | None:intergenic | 35.0% |
| !! | GCATCACATAATGTTGATTC+AGG | - | chr2.3:5564953-5564972 | MS.gene78419:CDS | 35.0% |
| !!! | ACTGTTAGTTTTGAGAGCAA+TGG | - | chr2.3:5564524-5564543 | MS.gene78419:CDS | 35.0% |
| !!! | GAAAGTTTTTTGATGAGGCA+TGG | + | chr2.3:5565406-5565425 | None:intergenic | 35.0% |
| AAACTTTCAATGAGACCTGG+TGG | - | chr2.3:5565418-5565437 | MS.gene78419:CDS | 40.0% | |
| AACCAAAGCAATGGTGAAGA+AGG | - | chr2.3:5566038-5566057 | MS.gene78419:CDS | 40.0% | |
| AACTTCCATTGACAACTCCA+TGG | + | chr2.3:5565753-5565772 | None:intergenic | 40.0% | |
| AAGAGTCAAATTCGCCAACA+AGG | + | chr2.3:5564595-5564614 | None:intergenic | 40.0% | |
| AATATCTATCCGCTGCATAC+TGG | + | chr2.3:5564319-5564338 | None:intergenic | 40.0% | |
| ACAACTGCATTGCACAGAAA+TGG | - | chr2.3:5565566-5565585 | MS.gene78419:CDS | 40.0% | |
| AGAAAAGAGAAGTCATGCGA+TGG | - | chr2.3:5564787-5564806 | MS.gene78419:CDS | 40.0% | |
| AGGAGTTTGTAGTTCCAAGT+AGG | + | chr2.3:5564618-5564637 | None:intergenic | 40.0% | |
| AGGTTCAACAATGCTTCTCT+TGG | + | chr2.3:5565700-5565719 | None:intergenic | 40.0% | |
| AGTAATGTACAAGAGGGAAG+AGG | - | chr2.3:5564827-5564846 | MS.gene78419:CDS | 40.0% | |
| AGTCATCTTCTTCATCCATG+AGG | + | chr2.3:5564373-5564392 | None:intergenic | 40.0% | |
| ATATCTATCCGCTGCATACT+GGG | + | chr2.3:5564318-5564337 | None:intergenic | 40.0% | |
| ATGAGCTACTCAAGCAGATT+AGG | - | chr2.3:5565107-5565126 | MS.gene78419:CDS | 40.0% | |
| ATGGCCAAGAACATCATAGA+AGG | + | chr2.3:5564453-5564472 | None:intergenic | 40.0% | |
| CAACTGCATTGCACAGAAAT+GGG | - | chr2.3:5565567-5565586 | MS.gene78419:CDS | 40.0% | |
| CACAGAAATGGGAAACTATC+CGG | - | chr2.3:5565578-5565597 | MS.gene78419:CDS | 40.0% | |
| CATCTGGTGAAGGATTGTTA+TGG | + | chr2.3:5564472-5564491 | None:intergenic | 40.0% | |
| CATGGATGAAGAAGATGACT+TGG | - | chr2.3:5564373-5564392 | MS.gene78419:CDS | 40.0% | |
| CGAATTTGACTCTTCCTACT+TGG | - | chr2.3:5564601-5564620 | MS.gene78419:CDS | 40.0% | |
| CTAAACCGAGTCAGGAAAAA+CGG | + | chr2.3:5565784-5565803 | None:intergenic | 40.0% | |
| GAATCAAATTCAGCCAGTGA+TGG | - | chr2.3:5564733-5564752 | MS.gene78419:CDS | 40.0% | |
| TACAAACAATGCCACAGTTG+TGG | - | chr2.3:5565021-5565040 | MS.gene78419:CDS | 40.0% | |
| TACTTCTTTGTCAGCAAGGA+AGG | - | chr2.3:5564909-5564928 | MS.gene78419:CDS | 40.0% | |
| TAGGTTCAAGCAAATCAGGT+TGG | - | chr2.3:5565996-5566015 | MS.gene78419:CDS | 40.0% | |
| TATGCTAACTCAATGTGCAC+AGG | - | chr2.3:5565054-5565073 | MS.gene78419:CDS | 40.0% | |
| TCCTGCAAAGCTTCGAATTA+CGG | - | chr2.3:5565441-5565460 | MS.gene78419:CDS | 40.0% | |
| TCGAGGATCTAAAGATAGAC+AGG | - | chr2.3:5565602-5565621 | MS.gene78419:CDS | 40.0% | |
| TCTGAGCTTATGACAGAAGA+AGG | + | chr2.3:5564287-5564306 | None:intergenic | 40.0% | |
| TGATTCAGGAGAAAAGGCAA+AGG | - | chr2.3:5564967-5564986 | MS.gene78419:CDS | 40.0% | |
| TTCACTGCTACAGTTTCATC+AGG | + | chr2.3:5565673-5565692 | None:intergenic | 40.0% | |
| TTCAGAATGGAACTTGGAGT+TGG | - | chr2.3:5564711-5564730 | MS.gene78419:CDS | 40.0% | |
| TTCCTTCTTCACCATTGCTT+TGG | + | chr2.3:5566043-5566062 | None:intergenic | 40.0% | |
| TTCTTCCATGGAGTTGTCAA+TGG | - | chr2.3:5565745-5565764 | MS.gene78419:CDS | 40.0% | |
| ! | AAGCATTGTTGAACCTGATC+AGG | - | chr2.3:5565704-5565723 | MS.gene78419:CDS | 40.0% |
| ! | AGTACCTCATCTAAGATCTC+TGG | + | chr2.3:5564893-5564912 | None:intergenic | 40.0% |
| ! | GATTTTGTAGTCGATGTCGA+TGG | - | chr2.3:5566072-5566091 | MS.gene78419:CDS | 40.0% |
| ! | GCATGACTTCTCTTTTCTCT+TGG | + | chr2.3:5564785-5564804 | None:intergenic | 40.0% |
| ! | GCTGCTAACCATTTTCAGAA+TGG | - | chr2.3:5564698-5564717 | MS.gene78419:CDS | 40.0% |
| ! | GGATGTCACTTATGTATCTG+AGG | + | chr2.3:5564352-5564371 | None:intergenic | 40.0% |
| !! | AGAAGGATTTTTCAGCAGCT+TGG | + | chr2.3:5564436-5564455 | None:intergenic | 40.0% |
| !! | GATGGTAAGTGGGTTTTACA+GGG | - | chr2.3:5566090-5566109 | MS.gene78419:CDS | 40.0% |
| !! | TCTGATTCGGTTAACCTTGT+TGG | - | chr2.3:5564578-5564597 | MS.gene78419:CDS | 40.0% |
| !!! | GTTTTTCCTGACTCGGTTTA+GGG | - | chr2.3:5565783-5565802 | MS.gene78419:CDS | 40.0% |
| AAAGGCTGATGCTTGAGAGA+GGG | - | chr2.3:5565872-5565891 | MS.gene78419:CDS | 45.0% | |
| ACATCAAGCGGCATATACGA+TGG | + | chr2.3:5565220-5565239 | None:intergenic | 45.0% | |
| ACCACCAGAGATCTTAGATG+AGG | - | chr2.3:5564886-5564905 | MS.gene78419:CDS | 45.0% | |
| ACTGACCTAGACGGGAATTT+CGG | - | chr2.3:5564497-5564516 | MS.gene78419:CDS | 45.0% | |
| AGTCCACAAATCCACAACTG+TGG | + | chr2.3:5565035-5565054 | None:intergenic | 45.0% | |
| AGTCGATGTCGATGGTAAGT+GGG | - | chr2.3:5566080-5566099 | MS.gene78419:CDS | 45.0% | |
| ATGCCACAGTTGTGGATTTG+TGG | - | chr2.3:5565029-5565048 | MS.gene78419:CDS | 45.0% | |
| ATGCTTGAGAGAGGGTTGTT+TGG | - | chr2.3:5565880-5565899 | MS.gene78419:CDS | 45.0% | |
| CATTCTCTGCAAAGGAGATG+AGG | + | chr2.3:5565287-5565306 | None:intergenic | 45.0% | |
| CCAGCAGTTACTACATCAAG+CGG | + | chr2.3:5565232-5565251 | None:intergenic | 45.0% | |
| CCTGCAAAGCTTCGAATTAC+GGG | - | chr2.3:5565442-5565461 | MS.gene78419:CDS | 45.0% | |
| CGGCATATACGATGGAATCT+TGG | + | chr2.3:5565212-5565231 | None:intergenic | 45.0% | |
| CTATCTTTAGATCCTCGAGC+CGG | + | chr2.3:5565600-5565619 | None:intergenic | 45.0% | |
| GAAACCTCTTCAACCATCAC+TGG | + | chr2.3:5564749-5564768 | None:intergenic | 45.0% | |
| GAGCTAGGTTCAAGCAAATC+AGG | - | chr2.3:5565992-5566011 | MS.gene78419:CDS | 45.0% | |
| TAGTCGATGTCGATGGTAAG+TGG | - | chr2.3:5566079-5566098 | MS.gene78419:CDS | 45.0% | |
| TATCTATCCGCTGCATACTG+GGG | + | chr2.3:5564317-5564336 | None:intergenic | 45.0% | |
| TCAGTGCTATCATCTGGTGA+AGG | + | chr2.3:5564482-5564501 | None:intergenic | 45.0% | |
| TCTAGGTCAGTGCTATCATC+TGG | + | chr2.3:5564488-5564507 | None:intergenic | 45.0% | |
| TGAGAGAGGGTTGTTTGGAA+GGG | - | chr2.3:5565885-5565904 | MS.gene78419:CDS | 45.0% | |
| TGGATTTAGGCCTGCAGAAA+GGG | - | chr2.3:5565483-5565502 | MS.gene78419:CDS | 45.0% | |
| TTGAGAGAGGGTTGTTTGGA+AGG | - | chr2.3:5565884-5565903 | MS.gene78419:CDS | 45.0% | |
| ! | ACCTCATCTAAGATCTCTGG+TGG | + | chr2.3:5564890-5564909 | None:intergenic | 45.0% |
| ! | GAGGTACTTCTTTGTCAGCA+AGG | - | chr2.3:5564905-5564924 | MS.gene78419:CDS | 45.0% |
| ! | TGGGTTTTACAGGGATGGAA+AGG | - | chr2.3:5566099-5566118 | MS.gene78419:CDS | 45.0% |
| ! | TGTTATAGCTTGTGAGGGTG+CGG | - | chr2.3:5565918-5565937 | MS.gene78419:CDS | 45.0% |
| !! | ATGATAGCACTGACCTAGAC+GGG | - | chr2.3:5564489-5564508 | MS.gene78419:CDS | 45.0% |
| !! | CGATGGTAAGTGGGTTTTAC+AGG | - | chr2.3:5566089-5566108 | MS.gene78419:CDS | 45.0% |
| !! | GAATTTGCTACGGTTTCCAG+TGG | - | chr2.3:5565380-5565399 | MS.gene78419:CDS | 45.0% |
| !! | GATGATAGCACTGACCTAGA+CGG | - | chr2.3:5564488-5564507 | MS.gene78419:CDS | 45.0% |
| !! | GTAAGTGGGTTTTACAGGGA+TGG | - | chr2.3:5566094-5566113 | MS.gene78419:CDS | 45.0% |
| !! | TCTTGCAGAAAGGTGTTAGG+AGG | + | chr2.3:5564197-5564216 | None:intergenic | 45.0% |
| !!! | CGTTTTTCCTGACTCGGTTT+AGG | - | chr2.3:5565782-5565801 | MS.gene78419:CDS | 45.0% |
| AAAGGGCAGAGGAAACTGGA+AGG | - | chr2.3:5565500-5565519 | MS.gene78419:CDS | 50.0% | |
| AGCTTCCTCAGCCTGGATTT+AGG | - | chr2.3:5565470-5565489 | MS.gene78419:CDS | 50.0% | |
| CAAAGGCTGATGCTTGAGAG+AGG | - | chr2.3:5565871-5565890 | MS.gene78419:CDS | 50.0% | |
| CCCGTAATTCGAAGCTTTGC+AGG | + | chr2.3:5565445-5565464 | None:intergenic | 50.0% | |
| CCGCTTGATGTAGTAACTGC+TGG | - | chr2.3:5565229-5565248 | MS.gene78419:CDS | 50.0% | |
| CTCTCAAGCATCAGCCTTTG+CGG | + | chr2.3:5565871-5565890 | None:intergenic | 50.0% | |
| CTGCTACAGTTTCATCAGGC+AGG | + | chr2.3:5565669-5565688 | None:intergenic | 50.0% | |
| CTGGATTTAGGCCTGCAGAA+AGG | - | chr2.3:5565482-5565501 | MS.gene78419:CDS | 50.0% | |
| CTTTCTGCAGGCCTAAATCC+AGG | + | chr2.3:5565484-5565503 | None:intergenic | 50.0% | |
| TCAGCCAGTGATGGTTGAAG+AGG | - | chr2.3:5564742-5564761 | MS.gene78419:CDS | 50.0% | |
| TCTCAAGCATCAGCCTTTGC+GGG | + | chr2.3:5565870-5565889 | None:intergenic | 50.0% | |
| TGAAGATCCCCAGTATGCAG+CGG | - | chr2.3:5564307-5564326 | MS.gene78419:CDS | 50.0% | |
| TGAGACCTACAAGCAATGGC+AGG | - | chr2.3:5565957-5565976 | MS.gene78419:CDS | 50.0% | |
| TGCCATTGCTTGTAGGTCTC+AGG | + | chr2.3:5565958-5565977 | None:intergenic | 50.0% | |
| TGCTCAATGACCACTGGATC+AGG | + | chr2.3:5564674-5564693 | None:intergenic | 50.0% | |
| TGTGACACAACCTGATCCAG+TGG | - | chr2.3:5564661-5564680 | MS.gene78419:CDS | 50.0% | |
| ! | AGGCAACACTCTTCGCCTTT+TGG | - | chr2.3:5565127-5565146 | MS.gene78419:CDS | 50.0% |
| ! | CCTTTGATCGTAGCTTGCCA+CGG | + | chr2.3:5565080-5565099 | None:intergenic | 50.0% |
| ! | GCAACACTCTTCGCCTTTTG+GGG | - | chr2.3:5565129-5565148 | MS.gene78419:CDS | 50.0% |
| ! | GCTTGTTGCTCAATGACCAC+TGG | + | chr2.3:5564680-5564699 | None:intergenic | 50.0% |
| ! | GGCAACACTCTTCGCCTTTT+GGG | - | chr2.3:5565128-5565147 | MS.gene78419:CDS | 50.0% |
| ! | TTTTGATGAGGCATGGCCAC+TGG | + | chr2.3:5565399-5565418 | None:intergenic | 50.0% |
| !! | CTCTGAAGTCCATCCCCAAA+AGG | + | chr2.3:5565145-5565164 | None:intergenic | 50.0% |
| !! | CTTTTGGGGATGGACTTCAG+AGG | - | chr2.3:5565143-5565162 | MS.gene78419:CDS | 50.0% |
| !! | GTGCACCGTTTTTCCTGACT+CGG | - | chr2.3:5565776-5565795 | MS.gene78419:CDS | 50.0% |
| AACTCAATGTGCACAGGCCG+TGG | - | chr2.3:5565060-5565079 | MS.gene78419:CDS | 55.0% | |
| AGCAATGGCAGGTCAGGAAC+AGG | - | chr2.3:5565968-5565987 | MS.gene78419:CDS | 55.0% | |
| AGGTCAGGAACAGGAGAGCT+AGG | - | chr2.3:5565977-5565996 | MS.gene78419:CDS | 55.0% | |
| CCGTGGCAAGCTACGATCAA+AGG | - | chr2.3:5565077-5565096 | MS.gene78419:CDS | 55.0% | |
| CCTACAAGCAATGGCAGGTC+AGG | - | chr2.3:5565962-5565981 | MS.gene78419:CDS | 55.0% | |
| CCTGACCTGCCATTGCTTGT+AGG | + | chr2.3:5565965-5565984 | None:intergenic | 55.0% | |
| GCAGAAAGGGCAGAGGAAAC+TGG | - | chr2.3:5565496-5565515 | MS.gene78419:CDS | 55.0% | |
| GGAATTGAGCTTCCTCAGCC+TGG | - | chr2.3:5565463-5565482 | MS.gene78419:CDS | 55.0% | |
| GGCCTGAGACCTACAAGCAA+TGG | - | chr2.3:5565953-5565972 | MS.gene78419:CDS | 55.0% | |
| GTGCTTCCCTAAACCGAGTC+AGG | + | chr2.3:5565792-5565811 | None:intergenic | 55.0% | |
| GTTTCCTCTGCCCTTTCTGC+AGG | + | chr2.3:5565496-5565515 | None:intergenic | 55.0% | |
| TGCGACCGAAATTCCCGTCT+AGG | + | chr2.3:5564505-5564524 | None:intergenic | 55.0% | |
| ! | ATGGGAAACTATCCGGCTCG+AGG | - | chr2.3:5565585-5565604 | MS.gene78419:CDS | 55.0% |
| !! | CACTCTTCGCCTTTTGGGGA+TGG | - | chr2.3:5565133-5565152 | MS.gene78419:CDS | 55.0% |
| AGCCTTTGCGGGTCTTCGCA+AGG | + | chr2.3:5565859-5565878 | None:intergenic | 60.0% | |
| CGAAGCTTTGCAGGACCACC+AGG | + | chr2.3:5565436-5565455 | None:intergenic | 60.0% | |
| GCAGGCCTAAATCCAGGCTG+AGG | + | chr2.3:5565478-5565497 | None:intergenic | 60.0% | |
| GCGCGAACCCTGTATGTTGC+AGG | - | chr2.3:5564397-5564416 | MS.gene78419:CDS | 60.0% | |
| TAGGCCTGCAGAAAGGGCAG+AGG | - | chr2.3:5565489-5565508 | MS.gene78419:CDS | 60.0% | |
| TGCCTTGCGAAGACCCGCAA+AGG | - | chr2.3:5565854-5565873 | MS.gene78419:CDS | 60.0% | |
| ! | AGCTTGTGAGGGTGCGGAGA+GGG | - | chr2.3:5565924-5565943 | MS.gene78419:CDS | 60.0% |
| ! | TAGCTTGTGAGGGTGCGGAG+AGG | - | chr2.3:5565923-5565942 | MS.gene78419:CDS | 60.0% |
| AGGGTGCGGAGAGGGTCGAA+AGG | - | chr2.3:5565932-5565951 | MS.gene78419:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 5564188 | 5566161 | 5564188 | ID=MS.gene78419 |
| chr2.3 | mRNA | 5564188 | 5566161 | 5564188 | ID=MS.gene78419.t1;Parent=MS.gene78419 |
| chr2.3 | exon | 5564188 | 5566161 | 5564188 | ID=MS.gene78419.t1.exon1;Parent=MS.gene78419.t1 |
| chr2.3 | CDS | 5564188 | 5566161 | 5564188 | ID=cds.MS.gene78419.t1;Parent=MS.gene78419.t1 |
| Gene Sequence |
| Protein sequence |