AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78467

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78467.t1 MTR_2g097230 96.525 259 9 0 1 259 1 259 0.0 523
MS.gene78467.t1 MTR_4g064030 46.269 134 34 2 127 259 1 97 7.98e-33 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78467.t1 AT5G59400 57.197 264 102 4 7 259 6 269 1.07e-102 301
MS.gene78467.t1 AT5G59400 54.237 236 97 4 7 231 6 241 2.42e-82 248

Find 65 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAACGGTTGTTTCTGATTT+TGG 0.096153 2.2:-5090475 None:intergenic
TATCAAAATGCATTTAATTT+AGG 0.174239 2.2:+5091671 MS.gene78467:CDS
ACACATGGCACTTTGCTCTA+TGG 0.252132 2.2:-5092370 None:intergenic
CTAACCTCTTCTCCACAATT+TGG 0.256151 2.2:-5091966 None:intergenic
CCATGTGTGTGAATGCTTAT+TGG 0.266944 2.2:+5092385 MS.gene78467:CDS
AAAGAGCTTCAAGGGTTTCT+TGG 0.284671 2.2:-5090593 None:intergenic
CCGACAGTTAAAACACTTCA+AGG 0.341879 2.2:+5091903 MS.gene78467:intron
TTTCATCTTCCTTCTCTCTT+CGG 0.366302 2.2:+5090499 MS.gene78467:CDS
GGTGAATACCATTATCTTCA+TGG 0.383957 2.2:+5091739 MS.gene78467:CDS
CCTTGAAGCTCTTTATTCTC+AGG 0.389886 2.2:+5090602 MS.gene78467:CDS
CACATGGCACTTTGCTCTAT+GGG 0.391842 2.2:-5092369 None:intergenic
AAGAGCTTCAAGGGTTTCTT+GGG 0.410172 2.2:-5090592 None:intergenic
ACCGAGTGCCATGAAGATAA+TGG 0.411246 2.2:-5091747 None:intergenic
CCTGAGAATAAAGAGCTTCA+AGG 0.416387 2.2:-5090602 None:intergenic
GAATGACTTGGCAGCACTAA+AGG 0.426467 2.2:+5091935 MS.gene78467:CDS
TTACCTGAGGCAGAAGCAAC+CGG 0.444107 2.2:-5091785 None:intergenic
AGCAACAGCAGCACCGCTTT+AGG 0.444700 2.2:+5090429 MS.gene78467:CDS
TATCCGGTTGCTTCTGCCTC+AGG 0.446058 2.2:+5091782 MS.gene78467:CDS
TTGGTAGTTCAGCAATGGTT+GGG 0.456189 2.2:+5091621 MS.gene78467:CDS
TTTGGTAGTTCAGCAATGGT+TGG 0.463462 2.2:+5091620 MS.gene78467:CDS
GAGGACTTAGTTGTGATGCT+TGG 0.477149 2.2:-5091709 None:intergenic
TGCATTTGGTAGTTCAGCAA+TGG 0.480534 2.2:+5091616 MS.gene78467:CDS
GGTAACAGTTGAAGCTTAAG+TGG 0.481788 2.2:+5090956 MS.gene78467:intron
TTTAATTTAGGATTATCATA+TGG 0.482685 2.2:+5091683 MS.gene78467:CDS
CAGTTGAAGCTTAAGTGGTA+TGG 0.493314 2.2:+5090961 MS.gene78467:intron
AGGGCAGGAAGATCTGTCTA+TGG 0.493392 2.2:+5091559 MS.gene78467:intron
CTGAGAATAAAGAGCTTCAA+GGG 0.499082 2.2:-5090601 None:intergenic
ACCATTATCTTCATGGCACT+CGG 0.500659 2.2:+5091746 MS.gene78467:CDS
AATGACTTGGCAGCACTAAA+GGG 0.512532 2.2:+5091936 MS.gene78467:CDS
GGTCCATCTTGTATATATGT+TGG 0.512587 2.2:+5090552 MS.gene78467:CDS
TTAAAACACTTCAAGGCTTG+TGG 0.533051 2.2:+5091910 MS.gene78467:CDS
TTATGTTATTACCTCAACTT+CGG 0.535679 2.2:-5092417 None:intergenic
AGGATACTTCACAACTGACT+TGG 0.542875 2.2:-5090986 None:intergenic
TCTTGGGTGGCAGTTTGAAG+AGG 0.543205 2.2:-5090576 None:intergenic
AGGCTTGTGGAGGAATGACT+TGG 0.547292 2.2:+5091923 MS.gene78467:CDS
GGAATTTCGCACCGAAGTTG+AGG 0.547885 2.2:+5092406 MS.gene78467:CDS
ACCTGCGACGACCGTCCTCA+TGG 0.549456 2.2:+5090531 MS.gene78467:CDS
AACATGTCATCAACTATCAA+AGG 0.550328 2.2:-5090836 None:intergenic
GGCAGAGATCCGAAGAGAGA+AGG 0.551019 2.2:-5090508 None:intergenic
ACCATGAGGACGGTCGTCGC+AGG 0.551432 2.2:-5090532 None:intergenic
GCAGCACCGCTTTAGGTGGA+TGG 0.553063 2.2:+5090436 MS.gene78467:CDS
GGACCAACATATATACAAGA+TGG 0.557422 2.2:-5090555 None:intergenic
AGCTTCAAGGGTTTCTTGGG+TGG 0.559365 2.2:-5090589 None:intergenic
ATGGTATTCACCATGAAAAG+AGG 0.559608 2.2:-5091728 None:intergenic
ATGTCCAAATTGTGGAGAAG+AGG 0.561187 2.2:+5091962 MS.gene78467:CDS
AAGGGTTCATGTCCAAATTG+TGG 0.563160 2.2:+5091954 MS.gene78467:CDS
CACCGTCCATCCACCTAAAG+CGG 0.577414 2.2:-5090442 None:intergenic
CACCGCTTTAGGTGGATGGA+CGG 0.580229 2.2:+5090440 MS.gene78467:CDS
TGCATTTGTAAGAACAGACA+AGG 0.588695 2.2:+5092334 MS.gene78467:CDS
AAACACTTCAAGGCTTGTGG+AGG 0.598739 2.2:+5091913 MS.gene78467:CDS
ATGAGGACGGTCGTCGCAGG+TGG 0.602794 2.2:-5090529 None:intergenic
AAGTTGATGCTGCAAAACAT+TGG 0.603833 2.2:-5091644 None:intergenic
ACAAGCACATATGAACATGT+TGG 0.606754 2.2:+5090398 None:intergenic
AACAGCAGCACCGCTTTAGG+TGG 0.608229 2.2:+5090432 MS.gene78467:CDS
ATCCTCGTTGCAGTATCAGA+AGG 0.615303 2.2:+5091004 MS.gene78467:CDS
CCAATAAGCATTCACACACA+TGG 0.617576 2.2:-5092385 None:intergenic
AATCACCTCAGCATCAGCAT+AGG 0.620614 2.2:-5091034 None:intergenic
TGACATGTTTGATAGAGTAG+AGG 0.624434 2.2:+5090850 MS.gene78467:CDS
GCAAGGGATGCATATTACAA+AGG 0.629849 2.2:+5090809 MS.gene78467:CDS
TACAAGATGGACCATGAGGA+CGG 0.641757 2.2:-5090542 None:intergenic
ATCAACCTATGCTGATGCTG+AGG 0.651620 2.2:+5091029 MS.gene78467:CDS
ACATGGCACTTTGCTCTATG+GGG 0.653009 2.2:-5092368 None:intergenic
AGAAGGAAGATGAAACAGAA+CGG 0.670572 2.2:-5090491 None:intergenic
TATATACAAGATGGACCATG+AGG 0.716840 2.2:-5090546 None:intergenic
TGCCTTCTGATACTGCAACG+AGG 0.764708 2.2:-5091006 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAGTTAAAATTTGTA+AGG - chr2.2:5091842-5091861 None:intergenic 10.0%
!!! ATTTTAATAAAACTATTTTC+AGG - chr2.2:5091300-5091319 None:intergenic 10.0%
!!! GAAAATAGTTTTATTAAAAT+TGG + chr2.2:5091300-5091319 MS.gene78467:intron 10.0%
!! ATCTTATGTTATTCATATTA+TGG + chr2.2:5090935-5090954 MS.gene78467:intron 15.0%
!! TAATAAATATTACATTCATC+TGG + chr2.2:5091447-5091466 MS.gene78467:intron 15.0%
!!! ATTGAGAATTATTTTAAACA+TGG + chr2.2:5090765-5090784 MS.gene78467:intron 15.0%
!!! TATCAAAATGCATTTAATTT+AGG + chr2.2:5091671-5091690 MS.gene78467:CDS 15.0%
!!! TTTAATTTAGGATTATCATA+TGG + chr2.2:5091683-5091702 MS.gene78467:CDS 15.0%
!!! TTTTATTAAAATTGGTTTTG+CGG + chr2.2:5091308-5091327 MS.gene78467:intron 15.0%
!! GAATAACATAAGATTAAGAT+CGG - chr2.2:5090929-5090948 None:intergenic 20.0%
!!! GTTGTTTGTTTTATTGAAAA+AGG + chr2.2:5092127-5092146 MS.gene78467:intron 20.0%
! ACTACCAAATGCAAAAAATA+AGG - chr2.2:5091609-5091628 None:intergenic 25.0%
! ATAATGCAAAGAATGCATAT+TGG + chr2.2:5091200-5091219 MS.gene78467:intron 25.0%
! TAAGTATAAGCAACTGAAAT+TGG - chr2.2:5091126-5091145 None:intergenic 25.0%
! TAATGCAAAGAATGCATATT+GGG + chr2.2:5091201-5091220 MS.gene78467:intron 25.0%
! TATGAAAGACTACAAAGTTT+GGG - chr2.2:5092000-5092019 None:intergenic 25.0%
!! TGGTGAATTTTCATCAATAA+GGG - chr2.2:5091106-5091125 None:intergenic 25.0%
!! TTGGTGAATTTTCATCAATA+AGG - chr2.2:5091107-5091126 None:intergenic 25.0%
!!! ATACTTAAGTTTTAGTTGCA+TGG + chr2.2:5091139-5091158 MS.gene78467:intron 25.0%
!!! GAATGTTTTTGTTTTCGAAA+AGG + chr2.2:5091359-5091378 MS.gene78467:intron 25.0%
!!! GAATTATTTTAAACATGGCA+TGG + chr2.2:5090770-5090789 MS.gene78467:intron 25.0%
AACATGTCATCAACTATCAA+AGG - chr2.2:5090839-5090858 None:intergenic 30.0%
AATGCAAAGAATGCATATTG+GGG + chr2.2:5091202-5091221 MS.gene78467:intron 30.0%
ATATGAAAAGTAGCAGCAAA+AGG - chr2.2:5091815-5091834 None:intergenic 30.0%
ATATTGAATGATGTGGATGT+AGG + chr2.2:5091539-5091558 MS.gene78467:intron 30.0%
ATGAAAGACTACAAAGTTTG+GGG - chr2.2:5091999-5092018 None:intergenic 30.0%
CAAGAATAGAGAAAAGAGAA+GGG - chr2.2:5091505-5091524 None:intergenic 30.0%
CGTCTTAATATTGAATGATG+TGG + chr2.2:5091532-5091551 MS.gene78467:intron 30.0%
CTATGAAAGACTACAAAGTT+TGG - chr2.2:5092001-5092020 None:intergenic 30.0%
CTTTGACTAATGATCTTGTT+TGG + chr2.2:5092042-5092061 MS.gene78467:intron 30.0%
GCATTCTTTGCATTATTAAG+AGG - chr2.2:5091196-5091215 None:intergenic 30.0%
TATTGAATGATGTGGATGTA+GGG + chr2.2:5091540-5091559 MS.gene78467:intron 30.0%
TTAAAATTGTCTGAGTGAGT+TGG + chr2.2:5092290-5092309 MS.gene78467:intron 30.0%
TTCTTACAAATGCAAATACC+TGG - chr2.2:5092328-5092347 None:intergenic 30.0%
TTGCTTATCGAATAAGTGTT+CGG - chr2.2:5092081-5092100 None:intergenic 30.0%
! AAGAAGTTAAGAAGCATATG+TGG - chr2.2:5090897-5090916 None:intergenic 30.0%
!!! TGGACCTTATTTTTTGCATT+TGG + chr2.2:5091602-5091621 MS.gene78467:CDS 30.0%
!!! TGTTTTAACTGTCGGAAAAA+AGG - chr2.2:5091898-5091917 None:intergenic 30.0%
!!! TTTTCAGGTCTAATCAATGT+AGG - chr2.2:5091285-5091304 None:intergenic 30.0%
AATGATGTTGGATCTTCATG+TGG + chr2.2:5091227-5091246 MS.gene78467:intron 35.0%
AGAAAAGAGAAGGGAAAAAG+GGG - chr2.2:5091496-5091515 None:intergenic 35.0%
AGAAGGAAGATGAAACAGAA+CGG - chr2.2:5090494-5090513 None:intergenic 35.0%
AGAGAAAAGAGAAGGGAAAA+AGG - chr2.2:5091498-5091517 None:intergenic 35.0%
ATGCAAATACCTGGAAGATA+AGG - chr2.2:5092319-5092338 None:intergenic 35.0%
ATGGTATTCACCATGAAAAG+AGG - chr2.2:5091731-5091750 None:intergenic 35.0%
CAAAGAAGCCAAAGAAGTTA+AGG - chr2.2:5092027-5092046 None:intergenic 35.0%
CATAGTCTCCTTAACTTCTT+TGG + chr2.2:5092016-5092035 MS.gene78467:intron 35.0%
CCAAGAATAGAGAAAAGAGA+AGG - chr2.2:5091506-5091525 None:intergenic 35.0%
CTGAGAATAAAGAGCTTCAA+GGG - chr2.2:5090604-5090623 None:intergenic 35.0%
GAGAAAAGAGAAGGGAAAAA+GGG - chr2.2:5091497-5091516 None:intergenic 35.0%
GCGCTTATGCTTAATTAAGT+TGG + chr2.2:5090692-5090711 MS.gene78467:intron 35.0%
GGACCAACATATATACAAGA+TGG - chr2.2:5090558-5090577 None:intergenic 35.0%
GGTCCATCTTGTATATATGT+TGG + chr2.2:5090552-5090571 MS.gene78467:CDS 35.0%
GGTGAATACCATTATCTTCA+TGG + chr2.2:5091739-5091758 MS.gene78467:CDS 35.0%
TATATACAAGATGGACCATG+AGG - chr2.2:5090549-5090568 None:intergenic 35.0%
TATGACAGTTAGCAATCTAG+AGG + chr2.2:5092185-5092204 MS.gene78467:intron 35.0%
TGAAAGACTACAAAGTTTGG+GGG - chr2.2:5091998-5092017 None:intergenic 35.0%
TGACATGTTTGATAGAGTAG+AGG + chr2.2:5090850-5090869 MS.gene78467:CDS 35.0%
TGATCTTTGCTAATAGGCAA+GGG + chr2.2:5090793-5090812 MS.gene78467:intron 35.0%
TGCATTTGTAAGAACAGACA+AGG + chr2.2:5092334-5092353 MS.gene78467:CDS 35.0%
TTAAAACACTTCAAGGCTTG+TGG + chr2.2:5091910-5091929 MS.gene78467:CDS 35.0%
TTTCATCTTCCTTCTCTCTT+CGG + chr2.2:5090499-5090518 MS.gene78467:CDS 35.0%
! AAGAAGCATATGTGGTGAAT+TGG - chr2.2:5090889-5090908 None:intergenic 35.0%
! AATGTTTTGCAGCATCAACT+TGG + chr2.2:5091646-5091665 MS.gene78467:CDS 35.0%
! ACAACTAAGTCCTCTTTTCA+TGG + chr2.2:5091718-5091737 MS.gene78467:CDS 35.0%
! AGAAGCATATGTGGTGAATT+GGG - chr2.2:5090888-5090907 None:intergenic 35.0%
! AGCAAAAGGATTTTTACCTG+AGG - chr2.2:5091801-5091820 None:intergenic 35.0%
! CCTTCTCTTTTCTCTATTCT+TGG + chr2.2:5091503-5091522 MS.gene78467:intron 35.0%
! TTCATCTGGTTAGAGTGTTA+AGG + chr2.2:5091461-5091480 MS.gene78467:intron 35.0%
!! AAGTTGATGCTGCAAAACAT+TGG - chr2.2:5091647-5091666 None:intergenic 35.0%
!!! AGAACGGTTGTTTCTGATTT+TGG - chr2.2:5090478-5090497 None:intergenic 35.0%
!!! CCTTGAAGTGTTTTAACTGT+CGG - chr2.2:5091906-5091925 None:intergenic 35.0%
AAAGAGCTTCAAGGGTTTCT+TGG - chr2.2:5090596-5090615 None:intergenic 40.0%
AAGAGCTTCAAGGGTTTCTT+GGG - chr2.2:5090595-5090614 None:intergenic 40.0%
AAGCATATGTGGTGAATTGG+GGG - chr2.2:5090886-5090905 None:intergenic 40.0%
AAGGGTTCATGTCCAAATTG+TGG + chr2.2:5091954-5091973 MS.gene78467:CDS 40.0%
ACCATTATCTTCATGGCACT+CGG + chr2.2:5091746-5091765 MS.gene78467:CDS 40.0%
AGGATACTTCACAACTGACT+TGG - chr2.2:5090989-5091008 None:intergenic 40.0%
AGTTGGATTCCTTATCTTCC+AGG + chr2.2:5092307-5092326 MS.gene78467:intron 40.0%
ATCAATAAGGGTCATAGCCA+AGG - chr2.2:5091094-5091113 None:intergenic 40.0%
ATGTCCAAATTGTGGAGAAG+AGG + chr2.2:5091962-5091981 MS.gene78467:CDS 40.0%
CAGTTGAAGCTTAAGTGGTA+TGG + chr2.2:5090961-5090980 MS.gene78467:intron 40.0%
CATATTGGGGAGAATGATGT+TGG + chr2.2:5091215-5091234 MS.gene78467:intron 40.0%
CCAATAAGCATTCACACACA+TGG - chr2.2:5092388-5092407 None:intergenic 40.0%
CCATGTGTGTGAATGCTTAT+TGG + chr2.2:5092385-5092404 MS.gene78467:CDS 40.0%
CCGACAGTTAAAACACTTCA+AGG + chr2.2:5091903-5091922 MS.gene78467:intron 40.0%
CCTGAGAATAAAGAGCTTCA+AGG - chr2.2:5090605-5090624 None:intergenic 40.0%
CCTTGAAGCTCTTTATTCTC+AGG + chr2.2:5090602-5090621 MS.gene78467:CDS 40.0%
CTAACCTCTTCTCCACAATT+TGG - chr2.2:5091969-5091988 None:intergenic 40.0%
GAAAAGAGAAGGGAAAAAGG+GGG - chr2.2:5091495-5091514 None:intergenic 40.0%
GAAGCATATGTGGTGAATTG+GGG - chr2.2:5090887-5090906 None:intergenic 40.0%
GCAAGGGATGCATATTACAA+AGG + chr2.2:5090809-5090828 MS.gene78467:CDS 40.0%
GCATGGTGATCTTTGCTAAT+AGG + chr2.2:5090787-5090806 MS.gene78467:intron 40.0%
GGTAACAGTTGAAGCTTAAG+TGG + chr2.2:5090956-5090975 MS.gene78467:intron 40.0%
GTGATCTTTGCTAATAGGCA+AGG + chr2.2:5090792-5090811 MS.gene78467:intron 40.0%
! AATGACTTGGCAGCACTAAA+GGG + chr2.2:5091936-5091955 MS.gene78467:CDS 40.0%
! ACTTCTTATTTGCTCTGCCT+TGG + chr2.2:5091074-5091093 MS.gene78467:intron 40.0%
! TGCATTTGGTAGTTCAGCAA+TGG + chr2.2:5091616-5091635 MS.gene78467:CDS 40.0%
! TTGGTAGTTCAGCAATGGTT+GGG + chr2.2:5091621-5091640 MS.gene78467:CDS 40.0%
! TTTGGTAGTTCAGCAATGGT+TGG + chr2.2:5091620-5091639 MS.gene78467:CDS 40.0%
! TTTTTACATTAGCGAGTGCG+TGG + chr2.2:5091582-5091601 MS.gene78467:CDS 40.0%
!! CGGTTTTGTCATAGGATATC+CGG + chr2.2:5091766-5091785 MS.gene78467:CDS 40.0%
AAACACTTCAAGGCTTGTGG+AGG + chr2.2:5091913-5091932 MS.gene78467:CDS 45.0%
AATCACCTCAGCATCAGCAT+AGG - chr2.2:5091037-5091056 None:intergenic 45.0%
ACACATGGCACTTTGCTCTA+TGG - chr2.2:5092373-5092392 None:intergenic 45.0%
ACATGGCACTTTGCTCTATG+GGG - chr2.2:5092371-5092390 None:intergenic 45.0%
ACCGAGTGCCATGAAGATAA+TGG - chr2.2:5091750-5091769 None:intergenic 45.0%
ATCAACCTATGCTGATGCTG+AGG + chr2.2:5091029-5091048 MS.gene78467:CDS 45.0%
ATCCTCGTTGCAGTATCAGA+AGG + chr2.2:5091004-5091023 MS.gene78467:CDS 45.0%
CACATGGCACTTTGCTCTAT+GGG - chr2.2:5092372-5092391 None:intergenic 45.0%
GAGGACTTAGTTGTGATGCT+TGG - chr2.2:5091712-5091731 None:intergenic 45.0%
TACAAGATGGACCATGAGGA+CGG - chr2.2:5090545-5090564 None:intergenic 45.0%
! GAATGACTTGGCAGCACTAA+AGG + chr2.2:5091935-5091954 MS.gene78467:CDS 45.0%
!! ATGGCACTCGGTTTTGTCAT+AGG + chr2.2:5091758-5091777 MS.gene78467:CDS 45.0%
!! TGGTTTTGCGGCGTTGAATT+AGG + chr2.2:5091320-5091339 MS.gene78467:intron 45.0%
AGAAGGGAAAAAGGGGGTAG+GGG - chr2.2:5091489-5091508 None:intergenic 50.0%
AGAGAAGGGAAAAAGGGGGT+AGG - chr2.2:5091491-5091510 None:intergenic 50.0%
AGCTTCAAGGGTTTCTTGGG+TGG - chr2.2:5090592-5090611 None:intergenic 50.0%
AGGCTTGTGGAGGAATGACT+TGG + chr2.2:5091923-5091942 MS.gene78467:CDS 50.0%
AGGGCAGGAAGATCTGTCTA+TGG + chr2.2:5091559-5091578 MS.gene78467:intron 50.0%
GAATGATGTGGATGTAGGGC+AGG + chr2.2:5091544-5091563 MS.gene78467:intron 50.0%
GAGAAGGGAAAAAGGGGGTA+GGG - chr2.2:5091490-5091509 None:intergenic 50.0%
TCTTGGGTGGCAGTTTGAAG+AGG - chr2.2:5090579-5090598 None:intergenic 50.0%
TGCCTTCTGATACTGCAACG+AGG - chr2.2:5091009-5091028 None:intergenic 50.0%
TTACCTGAGGCAGAAGCAAC+CGG - chr2.2:5091788-5091807 None:intergenic 50.0%
AGCAACAGCAGCACCGCTTT+AGG + chr2.2:5090429-5090448 MS.gene78467:CDS 55.0%
CACCGTCCATCCACCTAAAG+CGG - chr2.2:5090445-5090464 None:intergenic 55.0%
GGCAGAGATCCGAAGAGAGA+AGG - chr2.2:5090511-5090530 None:intergenic 55.0%
TATCCGGTTGCTTCTGCCTC+AGG + chr2.2:5091782-5091801 MS.gene78467:CDS 55.0%
! AACAGCAGCACCGCTTTAGG+TGG + chr2.2:5090432-5090451 MS.gene78467:CDS 55.0%
! CACCGCTTTAGGTGGATGGA+CGG + chr2.2:5090440-5090459 MS.gene78467:CDS 55.0%
! GCAGCACCGCTTTAGGTGGA+TGG + chr2.2:5090436-5090455 MS.gene78467:CDS 60.0%
ACCATGAGGACGGTCGTCGC+AGG - chr2.2:5090535-5090554 None:intergenic 65.0%
ACCTGCGACGACCGTCCTCA+TGG + chr2.2:5090531-5090550 MS.gene78467:CDS 65.0%
ATGAGGACGGTCGTCGCAGG+TGG - chr2.2:5090532-5090551 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 5090408 5092427 5090408 ID=MS.gene78467
chr2.2 mRNA 5090408 5092427 5090408 ID=MS.gene78467.t1;Parent=MS.gene78467
chr2.2 exon 5090408 5090623 5090408 ID=MS.gene78467.t1.exon1;Parent=MS.gene78467.t1
chr2.2 CDS 5090408 5090623 5090408 ID=cds.MS.gene78467.t1;Parent=MS.gene78467.t1
chr2.2 exon 5090809 5090871 5090809 ID=MS.gene78467.t1.exon2;Parent=MS.gene78467.t1
chr2.2 CDS 5090809 5090871 5090809 ID=cds.MS.gene78467.t1;Parent=MS.gene78467.t1
chr2.2 exon 5090964 5091050 5090964 ID=MS.gene78467.t1.exon3;Parent=MS.gene78467.t1
chr2.2 CDS 5090964 5091050 5090964 ID=cds.MS.gene78467.t1;Parent=MS.gene78467.t1
chr2.2 exon 5091566 5091803 5091566 ID=MS.gene78467.t1.exon4;Parent=MS.gene78467.t1
chr2.2 CDS 5091566 5091803 5091566 ID=cds.MS.gene78467.t1;Parent=MS.gene78467.t1
chr2.2 exon 5091910 5091983 5091910 ID=MS.gene78467.t1.exon5;Parent=MS.gene78467.t1
chr2.2 CDS 5091910 5091983 5091910 ID=cds.MS.gene78467.t1;Parent=MS.gene78467.t1
chr2.2 exon 5092329 5092427 5092329 ID=MS.gene78467.t1.exon6;Parent=MS.gene78467.t1
chr2.2 CDS 5092329 5092427 5092329 ID=cds.MS.gene78467.t1;Parent=MS.gene78467.t1
Gene Sequence

>MS.gene78467

ATGAACATGTTGGCAAGCACGAGCAACAGCAGCACCGCTTTAGGTGGATGGACGGTGTTACAGCTATCCAAAATCAGAAACAACCGTTCTGTTTCATCTTCCTTCTCTCTTCGGATCTCTGCCACCTGCGACGACCGTCCTCATGGTCCATCTTGTATATATGTTGGTCCTCTTCAAACTGCCACCCAAGAAACCCTTGAAGCTCTTTATTCTCAGGTAACTTCTATTGAGCTTTTCTCGCAAATTCACTTGATAATAATACTGCTTCTGATTTTATGCATAAAGCGCTTATGCTTAATTAAGTTGGTTATGTAATCAGTATTTTTATCTTTCTTCTTTTCATGTATTTATTTCTCTATTGAGAATTATTTTAAACATGGCATGGTGATCTTTGCTAATAGGCAAGGGATGCATATTACAAAGGAGAGCCTTTGATAGTTGATGACATGTTTGATAGAGTAGAGGTATCATTCTTCCCCCAATTCACCACATATGCTTCTTAACTTCTTATATGTATACCGATCTTAATCTTATGTTATTCATATTATGGTAACAGTTGAAGCTTAAGTGGTATGGTTCCAAGTCAGTTGTGAAGTATCCTCGTTGCAGTATCAGAAGGCAATCAACCTATGCTGATGCTGAGGTGATTTTCTTCAGTTTAGATTAACTTCTTATTTGCTCTGCCTTGGCTATGACCCTTATTGATGAAAATTCACCAATTTCAGTTGCTTATACTTAAGTTTTAGTTGCATGGTGCTCTTAATATTGTTTTTTTTTAAACGTGTCCTCTTAATAATGCAAAGAATGCATATTGGGGAGAATGATGTTGGATCTTCATGTGGCTGAGAAAGTTATTTGTGTGAAAAATTCAAATCCTACATTGATTAGACCTGAAAATAGTTTTATTAAAATTGGTTTTGCGGCGTTGAATTAGGTTCACGAACAAATATTGAATGTTTTTGTTTTCGAAAAGGCATTATGTTCATGTTTTGTGATATGTTCTATTTGTGTTGAATGTCTCTAGTTTCTACATGTTTTGTAATAAATATTACATTCATCTGGTTAGAGTGTTAAGGTTCCCCTACCCCCTTTTTCCCTTCTCTTTTCTCTATTCTTGGTTTCTTCGTCTTAATATTGAATGATGTGGATGTAGGGCAGGAAGATCTGTCTATGGTTTTTACATTAGCGAGTGCGTGGACCTTATTTTTTGCATTTGGTAGTTCAGCAATGGTTGGGCCAATGTTTTGCAGCATCAACTTGGCTTATCAAAATGCATTTAATTTAGGATTATCATATGGTAGCCAAGCATCACAACTAAGTCCTCTTTTCATGGTGAATACCATTATCTTCATGGCACTCGGTTTTGTCATAGGATATCCGGTTGCTTCTGCCTCAGGTAAAAATCCTTTTGCTGCTACTTTTCATATTAAGCCTTACAAATTTTAACTTTTTATGTCACTGCTTCTATATTCATATGTTATTACGTGCCTTTTTTCCGACAGTTAAAACACTTCAAGGCTTGTGGAGGAATGACTTGGCAGCACTAAAGGGTTCATGTCCAAATTGTGGAGAAGAGGTTAGTCATTGCCCCCAAACTTTGTAGTCTTTCATAGTCTCCTTAACTTCTTTGGCTTCTTTGACTAATGATCTTGTTTGGATACACATCTTAACCGAACACTTATTCGATAAGCAATTATCTTATTATGAGCTTATATAGCAGTTGTTTGTTTTATTGAAAAAGGAATGAGAGTGAACTTTATATAATCTAAAAACAATTTATGACAGTTAGCAATCTAGAGGAACTTCAATAAGTTATAAGCAACTTATGAATATATCATTAACTTTTTCATAAGTTCTTTCAAACACTTGCACAAGAACTTCATTAAAATTGTCTGAGTGAGTTGGATTCCTTATCTTCCAGGTATTTGCATTTGTAAGAACAGACAAGGCTAATAACTCACCCCATAGAGCAAAGTGCCATGTGTGTGAATGCTTATTGGAATTTCGCACCGAAGTTGAG
Protein sequence

>MS.gene78467.t1

MNMLASTSNSSTALGGWTVLQLSKIRNNRSVSSSFSLRISATCDDRPHGPSCIYVGPLQTATQETLEALYSQARDAYYKGEPLIVDDMFDRVELKLKWYGSKSVVKYPRCSIRRQSTYADAEEDLSMVFTLASAWTLFFAFGSSAMVGPMFCSINLAYQNAFNLGLSYGSQASQLSPLFMVNTIIFMALGFVIGYPVASASVKTLQGLWRNDLAALKGSCPNCGEEVFAFVRTDKANNSPHRAKCHVCECLLEFRTEVE