AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056508


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056508.t1 MTR_8g070480 99.682 314 1 0 9 322 131 444 0.0 639
MS.gene056508.t1 MTR_8g070480 99.160 238 2 0 9 246 131 368 3.75e-173 486
MS.gene056508.t1 MTR_1g014730 31.783 258 150 8 9 244 102 355 1.25e-28 114
MS.gene056508.t1 MTR_1g014730 31.604 212 124 6 9 200 102 312 4.62e-22 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056508.t1 AT5G47860 77.070 314 71 1 9 322 119 431 2.96e-180 505
MS.gene056508.t1 AT3G43540 32.296 257 150 7 9 244 76 329 1.86e-34 129
MS.gene056508.t1 AT3G43540 31.325 249 147 7 17 244 12 257 5.42e-31 119

Find 79 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGTGTTGGTCATTCTTT+GGG 0.278892 8.3:+31990498 MS.gene056508:CDS
CGACGGGTCTCTTCAGGCTT+TGG 0.336417 8.3:-31991858 None:intergenic
ACCTCCCCTGTATATGGATT+TGG 0.340975 8.3:+31991812 MS.gene056508:CDS
GCAGCTACCTCCCCTGTATA+TGG 0.350883 8.3:+31991806 MS.gene056508:CDS
AGGAAGAACCTGTTTCATAA+TGG 0.383147 8.3:-31991775 None:intergenic
GCCATTGCTGGTGGAACATC+TGG 0.385270 8.3:-31992937 None:intergenic
ACAAGTCGACGGGTCTCTTC+AGG 0.392151 8.3:-31991864 None:intergenic
CTCTCCGGTTCTTGTTCCAA+TGG 0.401052 8.3:+31990935 MS.gene056508:CDS
TCGCTTGTTCACCTTCTGAT+TGG 0.404163 8.3:+31990522 MS.gene056508:CDS
TGAGCCATTGGAACAAGAAC+CGG 0.409009 8.3:-31990939 None:intergenic
AGATATGCAGTTCAAAGATC+TGG 0.409569 8.3:+31990631 MS.gene056508:CDS
TAGCCCTCCCATTATGAAAC+AGG 0.409835 8.3:+31991767 MS.gene056508:CDS
GGAAGAACCTGTTTCATAAT+GGG 0.413387 8.3:-31991774 None:intergenic
AGTAAATTCTTCTCTTCCCT+TGG 0.414749 8.3:-31991835 None:intergenic
CCTTGGCCAAATCCATATAC+AGG 0.415186 8.3:-31991818 None:intergenic
GTCTATCCCCTTGTTCTCTC+CGG 0.425704 8.3:+31990920 MS.gene056508:CDS
CTTCAGATAAAATCATACTA+TGG 0.428850 8.3:+31992681 MS.gene056508:intron
TGAGCACCTGTGCTAGAGTT+GGG 0.434021 8.3:-31992755 None:intergenic
CCCCTCAGCTTACCTACCGT+TGG 0.435801 8.3:+31990137 MS.gene056508:CDS
CATGTCTAGTACAGAGCTAA+TGG 0.452122 8.3:-31992790 None:intergenic
TCTTGGATAGCCTCCAATGT+AGG 0.482902 8.3:+31993123 MS.gene056508:CDS
GAGACTGTTGCTAAAGAAGT+AGG 0.483550 8.3:+31993018 MS.gene056508:CDS
TCTTCACCAACTCTACGAGC+AGG 0.505702 8.3:+31990993 MS.gene056508:CDS
TCATGTTCTTCCATTGCAGC+AGG 0.518698 8.3:+31992836 MS.gene056508:CDS
CTGAGCACCTGTGCTAGAGT+TGG 0.523235 8.3:-31992756 None:intergenic
CTTGGATAGCCTCCAATGTA+GGG 0.524771 8.3:+31993124 MS.gene056508:CDS
AATGGAAGAACATGATCTCC+TGG 0.527504 8.3:-31992828 None:intergenic
AACAAGAACCGGAGAGAACA+AGG 0.530702 8.3:-31990928 None:intergenic
CTTCACCAACTCTACGAGCA+GGG 0.530981 8.3:+31990994 MS.gene056508:CDS
TGATCAAACCCGCTAGCATA+CGG 0.533439 8.3:-31990309 None:intergenic
ATGTCAATACGCAAGTTGCC+AGG 0.533956 8.3:+31992810 MS.gene056508:CDS
TGCACAAGTATCAAAGGAGA+TGG 0.543497 8.3:+31993077 MS.gene056508:CDS
CCTGTATATGGATTTGGCCA+AGG 0.545155 8.3:+31991818 MS.gene056508:CDS
GGAGGTAGCTGCTCAACTAA+AGG 0.545193 8.3:-31991795 None:intergenic
CTACCGCACACTAGAAGAAA+CGG 0.548124 8.3:+31990374 MS.gene056508:CDS
ACTAAAAGTACCTGCTGCAA+TGG 0.553595 8.3:-31992846 None:intergenic
TAGCAACTCCGTATGCTAGC+GGG 0.554500 8.3:+31990301 MS.gene056508:CDS
CTGACCCCTGCTCGTAGAGT+TGG 0.560516 8.3:-31990999 None:intergenic
AAGATCTGGAAATGTTCTCA+TGG 0.561464 8.3:+31990645 MS.gene056508:CDS
CGACACCCCAACTCTAGCAC+AGG 0.572178 8.3:+31992749 MS.gene056508:CDS
CTGTATATGGATTTGGCCAA+GGG 0.574220 8.3:+31991819 MS.gene056508:CDS
CTTGGCCAAATCCATATACA+GGG 0.577350 8.3:-31991817 None:intergenic
TTGTGGATGTGATCTCGTCT+TGG 0.582069 8.3:+31993106 MS.gene056508:CDS
ACCAGATGTTCCACCAGCAA+TGG 0.582100 8.3:+31992936 MS.gene056508:CDS
AAGTACAGTTCAAATTTGAT+CGG 0.582406 8.3:+31990349 MS.gene056508:CDS
AGTAGGGAACACACTAGGCA+TGG 0.588074 8.3:+31993035 MS.gene056508:CDS
AGACTGTTGCTAAAGAAGTA+GGG 0.588863 8.3:+31993019 MS.gene056508:CDS
CCTTCGTGCACAAGTATCAA+AGG 0.589210 8.3:+31993071 MS.gene056508:CDS
ACCGCATCAGCCATTGCTGG+TGG 0.591419 8.3:-31992946 None:intergenic
CAAGAACCGGAGAGAACAAG+GGG 0.593665 8.3:-31990926 None:intergenic
TCTTTAGCAACAGTCTCCCA+TGG 0.596882 8.3:-31993012 None:intergenic
GATGTCACATACAAGTCGAC+GGG 0.601796 8.3:-31991874 None:intergenic
AGAACCTGTTTCATAATGGG+AGG 0.609367 8.3:-31991771 None:intergenic
AAAGGAGATGGATATCCTTG+TGG 0.613816 8.3:+31993089 MS.gene056508:CDS
TCCACCAGCAATGGCTGATG+CGG 0.617490 8.3:+31992945 MS.gene056508:CDS
TTAACCGCATCAGCCATTGC+TGG 0.620300 8.3:-31992949 None:intergenic
ATGGCTGATGCGGTTAATCG+TGG 0.621159 8.3:+31992955 MS.gene056508:CDS
TTCACCAACTCTACGAGCAG+GGG 0.621293 8.3:+31990995 MS.gene056508:CDS
AACCAACGGTAGGTAAGCTG+AGG 0.622926 8.3:-31990139 None:intergenic
ATAGCAACTCCGTATGCTAG+CGG 0.625168 8.3:+31990300 MS.gene056508:CDS
TTACCGTTTCTTCTAGTGTG+CGG 0.628995 8.3:-31990377 None:intergenic
ACCAACGGTAGGTAAGCTGA+GGG 0.633236 8.3:-31990138 None:intergenic
AGATGTCACATACAAGTCGA+CGG 0.634577 8.3:-31991875 None:intergenic
AAAGAAGTAGGGAACACACT+AGG 0.639337 8.3:+31993030 MS.gene056508:CDS
GAGCACCTGTGCTAGAGTTG+GGG 0.641065 8.3:-31992754 None:intergenic
TCTTACTGTAGGAACACCAT+GGG 0.651182 8.3:+31992996 MS.gene056508:CDS
TCTCATGGCATTCAATAACA+AGG 0.653431 8.3:+31990660 MS.gene056508:CDS
GAACCTGTTTCATAATGGGA+GGG 0.653603 8.3:-31991770 None:intergenic
ACAAGAACCGGAGAGAACAA+GGG 0.653882 8.3:-31990927 None:intergenic
ATGTAGGGCCTAAAATTCTG+AGG 0.658581 8.3:+31993139 MS.gene056508:CDS
GCCAAATCCATATACAGGGG+AGG 0.666042 8.3:-31991813 None:intergenic
ACTGTACTTCATCTGCAATG+AGG 0.670617 8.3:-31990335 None:intergenic
ATCTTACTGTAGGAACACCA+TGG 0.671661 8.3:+31992995 MS.gene056508:CDS
ACGCTCAAGAAACCAACGGT+AGG 0.689763 8.3:-31990149 None:intergenic
CCTTTGATACTTGTGCACGA+AGG 0.690640 8.3:-31993071 None:intergenic
ATAGACGCTCAAGAAACCAA+CGG 0.709710 8.3:-31990153 None:intergenic
TTGGCCAAATCCATATACAG+GGG 0.728149 8.3:-31991816 None:intergenic
AAGACGAGATCACATCCACA+AGG 0.742246 8.3:-31993104 None:intergenic
CCAACGGTAGGTAAGCTGAG+GGG 0.809167 8.3:-31990137 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATTAAAAATGTTTCA+TGG + chr8.3:31991492-31991511 MS.gene056508:intron 10.0%
!! CTATATACTTTATAATAAAA+GGG + chr8.3:31992204-31992223 MS.gene056508:intron 10.0%
!! TATATACTTTATAATAAAAG+GGG + chr8.3:31992205-31992224 MS.gene056508:intron 10.0%
!! TCAAAAAAAAAATATTCATA+CGG + chr8.3:31992176-31992195 MS.gene056508:intron 10.0%
!! TCTATATACTTTATAATAAA+AGG + chr8.3:31992203-31992222 MS.gene056508:intron 10.0%
!! AAAAATATTACTTCGAATTT+AGG + chr8.3:31992329-31992348 MS.gene056508:intron 15.0%
!! AAAATATTACTTCGAATTTA+GGG + chr8.3:31992330-31992349 MS.gene056508:intron 15.0%
!! ATACGAATATAAAAGAAATA+AGG - chr8.3:31992539-31992558 None:intergenic 15.0%
!! ATATACTTTATAATAAAAGG+GGG + chr8.3:31992206-31992225 MS.gene056508:intron 15.0%
!! ATTCATGTTAATTAGAATAT+AGG - chr8.3:31992064-31992083 None:intergenic 15.0%
!! TAAAGAAGTAAAAATAAGTA+TGG - chr8.3:31991681-31991700 None:intergenic 15.0%
!! TCAAATATTTCTTGTATATT+TGG + chr8.3:31991208-31991227 MS.gene056508:intron 15.0%
!! TTTCATAATTTATCTTTCAA+AGG - chr8.3:31991275-31991294 None:intergenic 15.0%
!!! ACTATAATCACTTTTTAAAA+AGG - chr8.3:31989920-31989939 None:intergenic 15.0%
!!! ATATTTTCTAGAAGAAATAT+GGG + chr8.3:31991064-31991083 MS.gene056508:intron 15.0%
!!! ATTCAAATCTGATTTATTTT+CGG - chr8.3:31990738-31990757 None:intergenic 15.0%
!!! CTATAATCACTTTTTAAAAA+GGG - chr8.3:31989919-31989938 None:intergenic 15.0%
!!! GTAAAAATTTGTTAGATATT+AGG - chr8.3:31990809-31990828 None:intergenic 15.0%
!!! TATATTTTCTAGAAGAAATA+TGG + chr8.3:31991063-31991082 MS.gene056508:intron 15.0%
!!! TTTGATTGTATCAAATTTTT+AGG + chr8.3:31992099-31992118 MS.gene056508:intron 15.0%
!! AAAATAACTAGGATTTCATA+AGG + chr8.3:31991327-31991346 MS.gene056508:intron 20.0%
!! AAATAACTAGGATTTCATAA+GGG + chr8.3:31991328-31991347 MS.gene056508:intron 20.0%
!! AAGGTGTGTAATAAAAATTA+TGG - chr8.3:31992907-31992926 None:intergenic 20.0%
!! ACAAAATGTACAACAAAATT+GGG - chr8.3:31990094-31990113 None:intergenic 20.0%
!! ATAAGGAAAATACTTCAATT+AGG + chr8.3:31991592-31991611 MS.gene056508:intron 20.0%
!! ATCATGATTAAATTACAAAG+AGG - chr8.3:31990862-31990881 None:intergenic 20.0%
!! CTAAAGAAAAATTAATATCC+AGG + chr8.3:31991170-31991189 MS.gene056508:intron 20.0%
!! TATATGACATTAAAGACTAA+GGG + chr8.3:31991361-31991380 MS.gene056508:intron 20.0%
!!! AATTTTGTTGTACATTTTGT+GGG + chr8.3:31990094-31990113 MS.gene056508:intron 20.0%
!!! ATTGTATCAAATTTTTAGGA+TGG + chr8.3:31992103-31992122 MS.gene056508:intron 20.0%
!!! ATTTAACTTCAATTCTAATG+AGG + chr8.3:31992871-31992890 MS.gene056508:intron 20.0%
!!! ATTTTCACCTTTCAATTTAA+TGG - chr8.3:31991312-31991331 None:intergenic 20.0%
!!! TGAAGTATTTTCCTTATATA+TGG - chr8.3:31991589-31991608 None:intergenic 20.0%
!!! TGTGATTAGTCTAATTTTTA+AGG - chr8.3:31989983-31990002 None:intergenic 20.0%
!!! TTTTCTTTAGTTAACTTGAA+GGG - chr8.3:31991160-31991179 None:intergenic 20.0%
!!! TTTTTCTTTAGTTAACTTGA+AGG - chr8.3:31991161-31991180 None:intergenic 20.0%
! AAGTACAGTTCAAATTTGAT+CGG + chr8.3:31990349-31990368 MS.gene056508:CDS 25.0%
! AATATGACATTAAGCAGAAA+AGG - chr8.3:31991126-31991145 None:intergenic 25.0%
! AATGTAATTTGGAGATATTG+CGG - chr8.3:31990214-31990233 None:intergenic 25.0%
! AATTAAAAATGTTTCATGGC+TGG + chr8.3:31991496-31991515 MS.gene056508:intron 25.0%
! AGTTGTACCATTAAATTGAA+AGG + chr8.3:31991302-31991321 MS.gene056508:intron 25.0%
! ATCATAATTCAGAACTTGAT+CGG + chr8.3:31990758-31990777 MS.gene056508:intron 25.0%
! ATTAAAAATGTTTCATGGCT+GGG + chr8.3:31991497-31991516 MS.gene056508:intron 25.0%
! ATTGAAAGGTGAAAATAACT+AGG + chr8.3:31991316-31991335 MS.gene056508:intron 25.0%
! CACAAAATGTACAACAAAAT+TGG - chr8.3:31990095-31990114 None:intergenic 25.0%
! CTATATGACATTAAAGACTA+AGG + chr8.3:31991360-31991379 MS.gene056508:intron 25.0%
! CTTCAGATAAAATCATACTA+TGG + chr8.3:31992681-31992700 MS.gene056508:intron 25.0%
! GAAAAAATATCTGATAGAAG+TGG - chr8.3:31990975-31990994 None:intergenic 25.0%
! GATTACAAGGATAAAATTAC+TGG - chr8.3:31991916-31991935 None:intergenic 25.0%
! GCTACATAAAATACTGAAAA+TGG + chr8.3:31991026-31991045 MS.gene056508:intron 25.0%
! GTTTCATTTGACCATATATA+AGG + chr8.3:31991575-31991594 MS.gene056508:intron 25.0%
! TACAAAGAGGATTCTTAAAT+AGG - chr8.3:31990849-31990868 None:intergenic 25.0%
! TTCAATTTAATGGTACAACT+CGG - chr8.3:31991302-31991321 None:intergenic 25.0%
!! AAAGGTGCATACATAAAATA+CGG + chr8.3:31992269-31992288 MS.gene056508:intron 25.0%
!! CAAATCCTTTTACAAAGAAA+TGG - chr8.3:31992394-31992413 None:intergenic 25.0%
!! GAATTTTATGAGAAGATTTC+TGG - chr8.3:31992712-31992731 None:intergenic 25.0%
!! TTTTCAATATACCAATCAGA+AGG - chr8.3:31990536-31990555 None:intergenic 25.0%
!!! AAATTTCCTTTCATTTTTGC+AGG + chr8.3:31990887-31990906 MS.gene056508:intron 25.0%
!!! AGTGAAAGTATTTTCCATTT+AGG + chr8.3:31992469-31992488 MS.gene056508:intron 25.0%
!!! ATTACTTTTGCTATTTAACC+AGG + chr8.3:31990604-31990623 MS.gene056508:intron 25.0%
!!! CAATTTTGTTGTACATTTTG+TGG + chr8.3:31990093-31990112 MS.gene056508:intron 25.0%
!!! CTTTGTGTTTCTAATTTTCA+AGG + chr8.3:31990429-31990448 MS.gene056508:intron 25.0%
!!! GATTAGTCTAATTTTTAAGG+CGG - chr8.3:31989980-31989999 None:intergenic 25.0%
!!! GTGAAAGTATTTTCCATTTA+GGG + chr8.3:31992470-31992489 MS.gene056508:intron 25.0%
!!! TGAAAGTATTTTCCATTTAG+GGG + chr8.3:31992471-31992490 MS.gene056508:intron 25.0%
!!! TTACTTTTGCTATTTAACCA+GGG + chr8.3:31990605-31990624 MS.gene056508:intron 25.0%
AAAATACTGAAAATGGCAGA+AGG + chr8.3:31991033-31991052 MS.gene056508:intron 30.0%
AACATAGTATTCGTACTTGT+CGG - chr8.3:31991655-31991674 None:intergenic 30.0%
AAGATAGTCAATTACAGCAT+TGG + chr8.3:31991534-31991553 MS.gene056508:intron 30.0%
AAGGATTTCTGAATTGCTTT+AGG - chr8.3:31992586-31992605 None:intergenic 30.0%
AATAGAGTTGAGAAGATCAA+AGG - chr8.3:31992605-31992624 None:intergenic 30.0%
ACTTTATAATAAAAGGGGGT+CGG + chr8.3:31992210-31992229 MS.gene056508:intron 30.0%
AGTGTGACAAGAATGTAATT+TGG - chr8.3:31990225-31990244 None:intergenic 30.0%
ATTGCTTGATTTACACTTGA+GGG - chr8.3:31991457-31991476 None:intergenic 30.0%
GTGTTTCATGAATCTATGAT+TGG - chr8.3:31991709-31991728 None:intergenic 30.0%
GTTATATTTGCATGAAGGAT+TGG + chr8.3:31992245-31992264 MS.gene056508:intron 30.0%
TAACAGTGTTAAAGTCAAGT+TGG - chr8.3:31992305-31992324 None:intergenic 30.0%
TATTGCTTGATTTACACTTG+AGG - chr8.3:31991458-31991477 None:intergenic 30.0%
TGAAAAGAAAAAAGAACACC+TGG - chr8.3:31991191-31991210 None:intergenic 30.0%
TGAAGCCATTTCTTTGTAAA+AGG + chr8.3:31992386-31992405 MS.gene056508:intron 30.0%
TTATCCTTGTAATCAGTGAA+GGG + chr8.3:31991922-31991941 MS.gene056508:intron 30.0%
TTTACAAAGAAATGGCTTCA+CGG - chr8.3:31992386-31992405 None:intergenic 30.0%
TTTACAATCAGTTTAGCAGA+AGG - chr8.3:31990559-31990578 None:intergenic 30.0%
TTTATCCTTGTAATCAGTGA+AGG + chr8.3:31991921-31991940 MS.gene056508:intron 30.0%
! ATTTTTATTACACACCTTGC+AGG + chr8.3:31992909-31992928 MS.gene056508:intron 30.0%
!! AAAGTCAAGTTGGATATGAT+TGG - chr8.3:31992295-31992314 None:intergenic 30.0%
!! ATTTGTATGCTCTAGCTTTA+GGG + chr8.3:31992422-31992441 MS.gene056508:intron 30.0%
!! ATTTTCAAGGAAATCACTGA+AGG + chr8.3:31990442-31990461 MS.gene056508:intron 30.0%
!! CAAAAAGTGTTCAATTTACG+AGG - chr8.3:31989945-31989964 None:intergenic 30.0%
!!! TTTTTAGGATGGTTTGATGA+TGG + chr8.3:31992114-31992133 MS.gene056508:intron 30.0%
AAGATCTGGAAATGTTCTCA+TGG + chr8.3:31990645-31990664 MS.gene056508:CDS 35.0%
AATTTGGAGATATTGCGGAA+AGG - chr8.3:31990209-31990228 None:intergenic 35.0%
AGACTGTTGCTAAAGAAGTA+GGG + chr8.3:31993019-31993038 MS.gene056508:CDS 35.0%
AGATATGCAGTTCAAAGATC+TGG + chr8.3:31990631-31990650 MS.gene056508:CDS 35.0%
AGGAAGAACCTGTTTCATAA+TGG - chr8.3:31991778-31991797 None:intergenic 35.0%
AGTAAATTCTTCTCTTCCCT+TGG - chr8.3:31991838-31991857 None:intergenic 35.0%
ATGTACAACAAAATTGGGCT+TGG - chr8.3:31990089-31990108 None:intergenic 35.0%
CTTAGTACATGCTCATTTCA+GGG + chr8.3:31990037-31990056 MS.gene056508:intron 35.0%
CTTGTCACACTATTTCATTG+AGG + chr8.3:31990234-31990253 MS.gene056508:intron 35.0%
CTTTATAATAAAAGGGGGTC+GGG + chr8.3:31992211-31992230 MS.gene056508:intron 35.0%
GAATGACCAACACCAAAAAT+AGG - chr8.3:31990495-31990514 None:intergenic 35.0%
GGAAGAACCTGTTTCATAAT+GGG - chr8.3:31991777-31991796 None:intergenic 35.0%
TAACTAGGATTTCATAAGGG+AGG + chr8.3:31991331-31991350 MS.gene056508:intron 35.0%
TACCCGTGTTCTTATTACTA+GGG + chr8.3:31990266-31990285 MS.gene056508:intron 35.0%
TAGATTCATGAAACACTTGC+AGG + chr8.3:31991713-31991732 MS.gene056508:intron 35.0%
TCAACTCACATATAGGAAGA+AGG + chr8.3:31990697-31990716 MS.gene056508:intron 35.0%
TCACACTATTTCATTGAGGT+AGG + chr8.3:31990238-31990257 MS.gene056508:intron 35.0%
TCTCATGGCATTCAATAACA+AGG + chr8.3:31990660-31990679 MS.gene056508:CDS 35.0%
TTACCCGTGTTCTTATTACT+AGG + chr8.3:31990265-31990284 MS.gene056508:intron 35.0%
TTGCTTCCTGCAAAAATGAA+AGG - chr8.3:31990896-31990915 None:intergenic 35.0%
TTTATAATAAAAGGGGGTCG+GGG + chr8.3:31992212-31992231 MS.gene056508:intron 35.0%
! AGGGTGTTATATTTGCATGA+AGG + chr8.3:31992240-31992259 MS.gene056508:intron 35.0%
! CTTTAGTTAACTTGAAGGGA+AGG - chr8.3:31991156-31991175 None:intergenic 35.0%
! CTTTTGTCGAATCTTACTGT+AGG + chr8.3:31992985-31993004 MS.gene056508:CDS 35.0%
! GTCAAAGACCTTCCTATTTT+TGG + chr8.3:31990480-31990499 MS.gene056508:CDS 35.0%
! TACAGCATTGGAAACAATCT+GGG + chr8.3:31991546-31991565 MS.gene056508:intron 35.0%
! TTACAGCATTGGAAACAATC+TGG + chr8.3:31991545-31991564 MS.gene056508:intron 35.0%
! TTTGTGGGAGGTATATTTGT+AGG + chr8.3:31990109-31990128 MS.gene056508:intron 35.0%
!! GATTTGTATGCTCTAGCTTT+AGG + chr8.3:31992421-31992440 MS.gene056508:intron 35.0%
!! TTTGGTGTTGGTCATTCTTT+GGG + chr8.3:31990498-31990517 MS.gene056508:CDS 35.0%
!! TTTGTTGTACATTTTGTGGG+AGG + chr8.3:31990097-31990116 MS.gene056508:intron 35.0%
!!! TTTTGGTGTTGGTCATTCTT+TGG + chr8.3:31990497-31990516 MS.gene056508:CDS 35.0%
AAAATGTTTCATGGCTGGGA+AGG + chr8.3:31991501-31991520 MS.gene056508:intron 40.0%
AAACACAAAGAAACTAGCCC+TGG - chr8.3:31990419-31990438 None:intergenic 40.0%
AAAGAAGTAGGGAACACACT+AGG + chr8.3:31993030-31993049 MS.gene056508:CDS 40.0%
AAAGGAGATGGATATCCTTG+TGG + chr8.3:31993089-31993108 MS.gene056508:CDS 40.0%
AACACAAAGAAACTAGCCCT+GGG - chr8.3:31990418-31990437 None:intergenic 40.0%
AATGGAAGAACATGATCTCC+TGG - chr8.3:31992831-31992850 None:intergenic 40.0%
ACCCCTAGTAATAAGAACAC+GGG - chr8.3:31990271-31990290 None:intergenic 40.0%
ACCCGTGTTCTTATTACTAG+GGG + chr8.3:31990267-31990286 MS.gene056508:intron 40.0%
ACTGTACTTCATCTGCAATG+AGG - chr8.3:31990338-31990357 None:intergenic 40.0%
AGATGTCACATACAAGTCGA+CGG - chr8.3:31991878-31991897 None:intergenic 40.0%
ATAGACGCTCAAGAAACCAA+CGG - chr8.3:31990156-31990175 None:intergenic 40.0%
ATATTGCGGAAAGGAACACA+GGG - chr8.3:31990200-31990219 None:intergenic 40.0%
ATCTTACTGTAGGAACACCA+TGG + chr8.3:31992995-31993014 MS.gene056508:CDS 40.0%
ATGTAGGGCCTAAAATTCTG+AGG + chr8.3:31993139-31993158 MS.gene056508:CDS 40.0%
ATTCATGAAACACTTGCAGG+CGG + chr8.3:31991716-31991735 MS.gene056508:intron 40.0%
CACCCCTAGTAATAAGAACA+CGG - chr8.3:31990272-31990291 None:intergenic 40.0%
CATGTCTAGTACAGAGCTAA+TGG - chr8.3:31992793-31992812 None:intergenic 40.0%
CCAGCAATCAACTCACATAT+AGG + chr8.3:31990690-31990709 MS.gene056508:intron 40.0%
CCTGAAATGAGCATGTACTA+AGG - chr8.3:31990039-31990058 None:intergenic 40.0%
CCTTAGTACATGCTCATTTC+AGG + chr8.3:31990036-31990055 MS.gene056508:intron 40.0%
CTGTATATGGATTTGGCCAA+GGG + chr8.3:31991819-31991838 MS.gene056508:CDS 40.0%
CTTGGCCAAATCCATATACA+GGG - chr8.3:31991820-31991839 None:intergenic 40.0%
GACCAACACCAAAAATAGGA+AGG - chr8.3:31990491-31990510 None:intergenic 40.0%
GAGACTGTTGCTAAAGAAGT+AGG + chr8.3:31993018-31993037 MS.gene056508:CDS 40.0%
TATTTCGCATACCTCAAGAG+AGG - chr8.3:31991093-31991112 None:intergenic 40.0%
TCTTACTGTAGGAACACCAT+GGG + chr8.3:31992996-31993015 MS.gene056508:CDS 40.0%
TGCACAAGTATCAAAGGAGA+TGG + chr8.3:31993077-31993096 MS.gene056508:CDS 40.0%
TGGCTTCACGGATTTATAAG+AGG - chr8.3:31992374-31992393 None:intergenic 40.0%
TTACCGTTTCTTCTAGTGTG+CGG - chr8.3:31990380-31990399 None:intergenic 40.0%
TTGGCCAAATCCATATACAG+GGG - chr8.3:31991819-31991838 None:intergenic 40.0%
! AAAATTGGGCTTGGAGCTTT+TGG - chr8.3:31990080-31990099 None:intergenic 40.0%
! AAATTGGGCTTGGAGCTTTT+GGG - chr8.3:31990079-31990098 None:intergenic 40.0%
! AATTTTAGGCCCTACATTGG+AGG - chr8.3:31993136-31993155 None:intergenic 40.0%
! AGAACCTGTTTCATAATGGG+AGG - chr8.3:31991774-31991793 None:intergenic 40.0%
! CAAACCCTTCACTGATTACA+AGG - chr8.3:31991929-31991948 None:intergenic 40.0%
! CAGAATTTTAGGCCCTACAT+TGG - chr8.3:31993139-31993158 None:intergenic 40.0%
! GAACCTGTTTCATAATGGGA+GGG - chr8.3:31991773-31991792 None:intergenic 40.0%
! TTTGCATGAAGGATTGGCAA+AGG + chr8.3:31992251-31992270 MS.gene056508:intron 40.0%
!! ACTAAAAGTACCTGCTGCAA+TGG - chr8.3:31992849-31992868 None:intergenic 40.0%
!! CCTATATGTGAGTTGATTGC+TGG - chr8.3:31990693-31990712 None:intergenic 40.0%
!! CTGAAGGTACTCATTGTTTC+AGG + chr8.3:31990458-31990477 MS.gene056508:intron 40.0%
!!! GACCTTCCTATTTTTGGTGT+TGG + chr8.3:31990486-31990505 MS.gene056508:CDS 40.0%
AACAAGAACCGGAGAGAACA+AGG - chr8.3:31990931-31990950 None:intergenic 45.0%
AAGACGAGATCACATCCACA+AGG - chr8.3:31993107-31993126 None:intergenic 45.0%
AATATGGGCAACCTCTCTTG+AGG + chr8.3:31991079-31991098 MS.gene056508:intron 45.0%
ACAAGAACCGGAGAGAACAA+GGG - chr8.3:31990930-31990949 None:intergenic 45.0%
ACCTCCCCTGTATATGGATT+TGG + chr8.3:31991812-31991831 MS.gene056508:CDS 45.0%
AGTTATCTGCAGCCCCTAAA+TGG - chr8.3:31992486-31992505 None:intergenic 45.0%
ATAGCAACTCCGTATGCTAG+CGG + chr8.3:31990300-31990319 MS.gene056508:CDS 45.0%
ATGTCAATACGCAAGTTGCC+AGG + chr8.3:31992810-31992829 MS.gene056508:CDS 45.0%
CATGCTCATTTCAGGGATCT+TGG + chr8.3:31990044-31990063 MS.gene056508:intron 45.0%
CCTGTATATGGATTTGGCCA+AGG + chr8.3:31991818-31991837 MS.gene056508:CDS 45.0%
CCTTCGTGCACAAGTATCAA+AGG + chr8.3:31993071-31993090 MS.gene056508:CDS 45.0%
CCTTGGCCAAATCCATATAC+AGG - chr8.3:31991821-31991840 None:intergenic 45.0%
CCTTTGATACTTGTGCACGA+AGG - chr8.3:31993074-31993093 None:intergenic 45.0%
CTACCGCACACTAGAAGAAA+CGG + chr8.3:31990374-31990393 MS.gene056508:CDS 45.0%
CTTGGATAGCCTCCAATGTA+GGG + chr8.3:31993124-31993143 MS.gene056508:CDS 45.0%
GATATTGCGGAAAGGAACAC+AGG - chr8.3:31990201-31990220 None:intergenic 45.0%
GATGTCACATACAAGTCGAC+GGG - chr8.3:31991877-31991896 None:intergenic 45.0%
TAGCCCTCCCATTATGAAAC+AGG + chr8.3:31991767-31991786 MS.gene056508:CDS 45.0%
TCATGTTCTTCCATTGCAGC+AGG + chr8.3:31992836-31992855 MS.gene056508:CDS 45.0%
TCGCTTGTTCACCTTCTGAT+TGG + chr8.3:31990522-31990541 MS.gene056508:CDS 45.0%
TCTTGGATAGCCTCCAATGT+AGG + chr8.3:31993123-31993142 MS.gene056508:CDS 45.0%
TCTTTAGCAACAGTCTCCCA+TGG - chr8.3:31993015-31993034 None:intergenic 45.0%
TGAACTGCATATCTTGACCC+TGG - chr8.3:31990625-31990644 None:intergenic 45.0%
TGAGCCATTGGAACAAGAAC+CGG - chr8.3:31990942-31990961 None:intergenic 45.0%
TGATCAAACCCGCTAGCATA+CGG - chr8.3:31990312-31990331 None:intergenic 45.0%
TTGTGGATGTGATCTCGTCT+TGG + chr8.3:31993106-31993125 MS.gene056508:CDS 45.0%
! AGCATTGGAAACAATCTGGG+AGG + chr8.3:31991549-31991568 MS.gene056508:intron 45.0%
!!! GGAGCAAAGTTTTGAGCCAT+TGG - chr8.3:31990954-31990973 None:intergenic 45.0%
AACCAACGGTAGGTAAGCTG+AGG - chr8.3:31990142-31990161 None:intergenic 50.0%
AAGCCTCAACTCGTTATCCC+AGG + chr8.3:31990398-31990417 MS.gene056508:intron 50.0%
ACCAACGGTAGGTAAGCTGA+GGG - chr8.3:31990141-31990160 None:intergenic 50.0%
ACCAGATGTTCCACCAGCAA+TGG + chr8.3:31992936-31992955 MS.gene056508:CDS 50.0%
ACGCTCAAGAAACCAACGGT+AGG - chr8.3:31990152-31990171 None:intergenic 50.0%
AGCCTCAACTCGTTATCCCA+GGG + chr8.3:31990399-31990418 MS.gene056508:intron 50.0%
AGTAGGGAACACACTAGGCA+TGG + chr8.3:31993035-31993054 MS.gene056508:CDS 50.0%
ATGGCTGATGCGGTTAATCG+TGG + chr8.3:31992955-31992974 MS.gene056508:CDS 50.0%
CAAGAACCGGAGAGAACAAG+GGG - chr8.3:31990929-31990948 None:intergenic 50.0%
CTCTCCGGTTCTTGTTCCAA+TGG + chr8.3:31990935-31990954 MS.gene056508:CDS 50.0%
CTTCACCAACTCTACGAGCA+GGG + chr8.3:31990994-31991013 MS.gene056508:CDS 50.0%
GAAAGGAACACAGGGAGTCA+GGG - chr8.3:31990192-31990211 None:intergenic 50.0%
GCCAAATCCATATACAGGGG+AGG - chr8.3:31991816-31991835 None:intergenic 50.0%
GGAGGTAGCTGCTCAACTAA+AGG - chr8.3:31991798-31991817 None:intergenic 50.0%
GTATTCGTACTTGTCGGTGC+TGG - chr8.3:31991649-31991668 None:intergenic 50.0%
GTCTATCCCCTTGTTCTCTC+CGG + chr8.3:31990920-31990939 MS.gene056508:CDS 50.0%
TAATAAAAGGGGGTCGGGGT+AGG + chr8.3:31992216-31992235 MS.gene056508:intron 50.0%
TAGCAACTCCGTATGCTAGC+GGG + chr8.3:31990301-31990320 MS.gene056508:CDS 50.0%
TCTTCACCAACTCTACGAGC+AGG + chr8.3:31990993-31991012 MS.gene056508:CDS 50.0%
TGAGCACCTGTGCTAGAGTT+GGG - chr8.3:31992758-31992777 None:intergenic 50.0%
TTAACCGCATCAGCCATTGC+TGG - chr8.3:31992952-31992971 None:intergenic 50.0%
TTCACCAACTCTACGAGCAG+GGG + chr8.3:31990995-31991014 MS.gene056508:CDS 50.0%
! AACATCTGGTAGTGCCTGCA+AGG - chr8.3:31992926-31992945 None:intergenic 50.0%
!! GCTCTAGCTTTAGGGAATGC+TGG + chr8.3:31992430-31992449 MS.gene056508:intron 50.0%
ACAAGTCGACGGGTCTCTTC+AGG - chr8.3:31991867-31991886 None:intergenic 55.0%
AGCCCTGGGATAACGAGTTG+AGG - chr8.3:31990404-31990423 None:intergenic 55.0%
CCAACGGTAGGTAAGCTGAG+GGG - chr8.3:31990140-31990159 None:intergenic 55.0%
CTGAGCACCTGTGCTAGAGT+TGG - chr8.3:31992759-31992778 None:intergenic 55.0%
GAGCACCTGTGCTAGAGTTG+GGG - chr8.3:31992757-31992776 None:intergenic 55.0%
GCAGCTACCTCCCCTGTATA+TGG + chr8.3:31991806-31991825 MS.gene056508:CDS 55.0%
GCCATTGCTGGTGGAACATC+TGG - chr8.3:31992940-31992959 None:intergenic 55.0%
GGAAAGGAACACAGGGAGTC+AGG - chr8.3:31990193-31990212 None:intergenic 55.0%
TCCACCAGCAATGGCTGATG+CGG + chr8.3:31992945-31992964 MS.gene056508:CDS 55.0%
AAAAGGGGGTCGGGGTAGGA+AGG + chr8.3:31992220-31992239 MS.gene056508:intron 60.0%
AAAGGGGGTCGGGGTAGGAA+GGG + chr8.3:31992221-31992240 MS.gene056508:intron 60.0%
ACCGCATCAGCCATTGCTGG+TGG - chr8.3:31992949-31992968 None:intergenic 60.0%
CCCCTCAGCTTACCTACCGT+TGG + chr8.3:31990137-31990156 MS.gene056508:CDS 60.0%
CGACACCCCAACTCTAGCAC+AGG + chr8.3:31992749-31992768 MS.gene056508:CDS 60.0%
CGACGGGTCTCTTCAGGCTT+TGG - chr8.3:31991861-31991880 None:intergenic 60.0%
CTGACCCCTGCTCGTAGAGT+TGG - chr8.3:31991002-31991021 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 31989907 31993167 31989907 ID=MS.gene056508
chr8.3 mRNA 31989907 31993167 31989907 ID=MS.gene056508.t1;Parent=MS.gene056508
chr8.3 exon 31989907 31989928 31989907 ID=MS.gene056508.t1.exon1;Parent=MS.gene056508.t1
chr8.3 CDS 31989907 31989928 31989907 ID=cds.MS.gene056508.t1;Parent=MS.gene056508.t1
chr8.3 exon 31990131 31990182 31990131 ID=MS.gene056508.t1.exon2;Parent=MS.gene056508.t1
chr8.3 CDS 31990131 31990182 31990131 ID=cds.MS.gene056508.t1;Parent=MS.gene056508.t1
chr8.3 exon 31990287 31990395 31990287 ID=MS.gene056508.t1.exon3;Parent=MS.gene056508.t1
chr8.3 CDS 31990287 31990395 31990287 ID=cds.MS.gene056508.t1;Parent=MS.gene056508.t1
chr8.3 exon 31990480 31990543 31990480 ID=MS.gene056508.t1.exon4;Parent=MS.gene056508.t1
chr8.3 CDS 31990480 31990543 31990480 ID=cds.MS.gene056508.t1;Parent=MS.gene056508.t1
chr8.3 exon 31990626 31990681 31990626 ID=MS.gene056508.t1.exon5;Parent=MS.gene056508.t1
chr8.3 CDS 31990626 31990681 31990626 ID=cds.MS.gene056508.t1;Parent=MS.gene056508.t1
chr8.3 exon 31990909 31991016 31990909 ID=MS.gene056508.t1.exon6;Parent=MS.gene056508.t1
chr8.3 CDS 31990909 31991016 31990909 ID=cds.MS.gene056508.t1;Parent=MS.gene056508.t1
chr8.3 exon 31991735 31991884 31991735 ID=MS.gene056508.t1.exon7;Parent=MS.gene056508.t1
chr8.3 CDS 31991735 31991884 31991735 ID=cds.MS.gene056508.t1;Parent=MS.gene056508.t1
chr8.3 exon 31992687 31992857 31992687 ID=MS.gene056508.t1.exon8;Parent=MS.gene056508.t1
chr8.3 CDS 31992687 31992857 31992687 ID=cds.MS.gene056508.t1;Parent=MS.gene056508.t1
chr8.3 exon 31992931 31993167 31992931 ID=MS.gene056508.t1.exon9;Parent=MS.gene056508.t1
chr8.3 CDS 31992931 31993167 31992931 ID=cds.MS.gene056508.t1;Parent=MS.gene056508.t1
Gene Sequence

>MS.gene056508

ATGATCGATCCCTTTTTAAAAAGTGATTATAGTAACCTCGTAAATTGAACACTTTTTGTAAAATGTATTGCCGCCTTAAAAATTAGACTAATCACAACGAGTGTGCTACTAGTTTTCATATTCACAAAACCTTAGTACATGCTCATTTCAGGGATCTTGGATTCTCAAACCCAAAAGCTCCAAGCCCAATTTTGTTGTACATTTTGTGGGAGGTATATTTGTAGGAGCTGCCCCTCAGCTTACCTACCGTTGGTTTCTTGAGCGTCTATCAGAAAAGTAAGTCCCTGACTCCCTGTGTTCCTTTCCGCAATATCTCCAAATTACATTCTTGTCACACTATTTCATTGAGGTAGGCTTATTACCCGTGTTCTTATTACTAGGGGTGTATTGATCATAGCAACTCCGTATGCTAGCGGGTTTGATCACTTCCTCATTGCAGATGAAGTACAGTTCAAATTTGATCGGTGCTACCGCACACTAGAAGAAACGGTAAGCCTCAACTCGTTATCCCAGGGCTAGTTTCTTTGTGTTTCTAATTTTCAAGGAAATCACTGAAGGTACTCATTGTTTCAGGTCAAAGACCTTCCTATTTTTGGTGTTGGTCATTCTTTGGGATCGCTTGTTCACCTTCTGATTGGTATATTGAAAACCTTCTGCTAAACTGATTGTAAAATGTAACTTGATTTGTAGATACTCAATTACTTTTGCTATTTAACCAGGGTCAAGATATGCAGTTCAAAGATCTGGAAATGTTCTCATGGCATTCAATAACAAGGTATTCATCCAGCAATCAACTCACATATAGGAAGAAGGATGAAATGTATACAACCGAAAATAAATCAGATTTGAATATCATAATTCAGAACTTGATCGGATCAGAACTTATTCATGCTGTCATTCCTAATATCTAACAAATTTTTACACATTTTCTGAGACTTTCCTATTTAAGAATCCTCTTTGTAATTTAATCATGATTGACTAAATTTCCTTTCATTTTTGCAGGAAGCAAGTTCGTCTATCCCCTTGTTCTCTCCGGTTCTTGTTCCAATGGCTCAAAACTTTGCTCCACTTCTATCAGATATTTTTTCTTCACCAACTCTACGAGCAGGGGTCAGTATTGCTACATAAAATACTGAAAATGGCAGAAGGCATCTATTATATTTTCTAGAAGAAATATGGGCAACCTCTCTTGAGGTATGCGAAATAGAATTTTGCTCCTTTTCTGCTTAATGTCATATTACAATAACCTTCCCTTCAAGTTAACTAAAGAAAAATTAATATCCAGGTGTTCTTTTTTCTTTTCAAATATTTCTTGTATATTTGGATACACTTAGACATCTCTTGCTTTGATTTTTCTTGTAAAATCCTTTGAAAGATAAATTATGAAAATTGCCGAGTTGTACCATTAAATTGAAAGGTGAAAATAACTAGGATTTCATAAGGGAGGTTGTTGCTATATGACATTAAAGACTAAGGGAGTGAAGTGCTATGTCAAAAACATGAGTCTTTGTCATCTGACTATATCTCAATAGAGCTGACTGTAATTTCCCTCAAGTGTAAATCAAGCAATACAGAAATTGCATGAAATAAATTAAAAATGTTTCATGGCTGGGAAGGTTGTTGCAGTAAGATAGTCAATTACAGCATTGGAAACAATCTGGGAGGTCTGTTTCATTTGACCATATATAAGGAAAATACTTCAATTAGGAGAAAATCTGTTTTTGATTTGAATATTTTTTCCAGCACCGACAAGTACGAATACTATGTTACACCATACTTATTTTTACTTCTTTACATGACCAATCATAGATTCATGAAACACTTGCAGGCGGAGATGACTTTGAAACAGTTACAAAATGTTAGCCCTCCCATTATGAAACAGGTTCTTCCTTTAGTTGAGCAGCTACCTCCCCTGTATATGGATTTGGCCAAGGGAAGAGAAGAATTTACTCCAAAGCCTGAAGAGACCCGTCGACTTGTATGTGACATCTCTGATTACTATTATTCCAGTAATTTTATCCTTGTAATCAGTGAAGGGTTTGTTCTATCATTCACATTGAATAATCTATCAGCATTTCATTTCAATTCTATGTCAATGAGCATATTTATTTGTTTAGACTTAAGAATTACAGTACATCTTGTATATATTATATTCCTATATTCTAATTAACATGAATGTTGCAGCTAGTTTCTTTGATTGTATCAAATTTTTAGGATGGTTTGATGATGGCTAACATCTGTAACTAAACTTCATTTTAGTCTAATTTCTTCAAAAAAAAAATATTCATACGGTCAATCTATATACTTTATAATAAAAGGGGGTCGGGGTAGGAAGGGTGTTATATTTGCATGAAGGATTGGCAAAGGTGCATACATAAAATACGGCCAATCATATCCAACTTGACTTTAACACTGTTAAGCTAAAAATATTACTTCGAATTTAGGGTCTATGTTATACTTAAAGCCTCTTATAAATCCGTGAAGCCATTTCTTTGTAAAAGGATTTGTAGACATGATTTGTATGCTCTAGCTTTAGGGAATGCTGGAAAGTATCTTCTATTCAGTGAAAGTATTTTCCATTTAGGGGCTGCAGATAACTATGATTTGACTTGTAATGTTTTTCTGAATTCCTTATTTCTTTTATATTCGTATACATCTAATTAATCATGATGATTTCCTAAAGCAATTCAGAAATCCTTTGATCTTCTCAACTCTATTTACTGAGTTTCATTCTTGATTTTGCATACAACTTTCTCATTTATTGTTTTTGAATTCTTCAGATAAAATCATACTATGGCGTATCCAGAAATCTTCTCATAAAATTCAATGATGATTCAATAGACGACACCCCAACTCTAGCACAGGTGCTCAGTTCTGAATCAGCCATTAGCTCTGTACTAGACATGTCAATACGCAAGTTGCCAGGAGATCATGTTCTTCCATTGCAGCAGGTACTTTTAGTAAATTTAACTTCAATTCTAATGAGGCTGTTATTATCCATAATTTTTATTACACACCTTGCAGGCACTACCAGATGTTCCACCAGCAATGGCTGATGCGGTTAATCGTGGAAGCGAGCTTTTGTCGAATCTTACTGTAGGAACACCATGGGAGACTGTTGCTAAAGAAGTAGGGAACACACTAGGCATGGATTCAACAAACATCCTTCGTGCACAAGTATCAAAGGAGATGGATATCCTTGTGGATGTGATCTCGTCTTGGATAGCCTCCAATGTAGGGCCTAAAATTCTGAGGCCGTAA

Protein sequence

>MS.gene056508.t1

MIDPFLKRAAPQLTYRWFLERLSEKGVLIIATPYASGFDHFLIADEVQFKFDRCYRTLEETVKDLPIFGVGHSLGSLVHLLIGSRYAVQRSGNVLMAFNNKEASSSIPLFSPVLVPMAQNFAPLLSDIFSSPTLRAGAEMTLKQLQNVSPPIMKQVLPLVEQLPPLYMDLAKGREEFTPKPEETRRLIKSYYGVSRNLLIKFNDDSIDDTPTLAQVLSSESAISSVLDMSIRKLPGDHVLPLQQALPDVPPAMADAVNRGSELLSNLTVGTPWETVAKEVGNTLGMDSTNILRAQVSKEMDILVDVISSWIASNVGPKILRP