AlfalfaGEDB | MS.gene78706

M. sativa cultivar XinJiangDaYe / MS.gene78706

KEGG: -
GO: -
PFAM: PF02893.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78706.t1	XP_003602953.1	87.4	277	16	1	1	277	1	258	4.40E-127	464.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78706.t1	Q9SE96	73.1	234	55	2	43	276	31	256	5.8e-96	352.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78706.t1	G7J579	87.4	277	16	1	1	277	1	258	3.2e-127	464.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049599	MS.gene78706	0.811359	7.28E-51	-1.69E-46
MS.gene049758	MS.gene78706	-0.854913	8.96E-62	-1.69E-46
MS.gene050762	MS.gene78706	-0.819219	1.30E-52	-1.69E-46
MS.gene050763	MS.gene78706	-0.821265	4.43E-53	-1.69E-46
MS.gene05119	MS.gene78706	0.81624	6.12E-52	-1.69E-46
MS.gene051662	MS.gene78706	-0.829361	5.37E-55	-1.69E-46
MS.gene051663	MS.gene78706	-0.81959	1.07E-52	-1.69E-46
MS.gene053836	MS.gene78706	-0.83053	2.79E-55	-1.69E-46
MS.gene054379	MS.gene78706	-0.806098	9.70E-50	-1.69E-46
MS.gene055277	MS.gene78706	-0.832562	8.81E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78706.t1	MTR_3g100750	92.419	277	2	1	1	277	1	258	0.0	520
MS.gene78706.t1	MTR_8g069110	71.667	180	51	0	97	276	90	269	3.34e-98	289
MS.gene78706.t1	MTR_7g083570	47.475	198	94	3	78	274	86	274	4.88e-64	202
MS.gene78706.t1	MTR_2g076350	47.030	202	102	3	79	275	25	226	4.76e-61	193
MS.gene78706.t1	MTR_1g033750	39.623	159	95	1	117	274	62	220	1.94e-43	147
MS.gene78706.t1	MTR_6g077990	38.994	159	96	1	117	274	37	195	2.37e-42	144
MS.gene78706.t1	MTR_6g077990	38.994	159	96	1	117	274	38	196	2.60e-42	144
MS.gene78706.t1	MTR_6g077990	40.411	146	86	1	130	274	8	153	2.59e-40	137
MS.gene78706.t1	MTR_8g100065	37.654	162	97	2	116	274	22	182	4.01e-40	138
MS.gene78706.t1	MTR_1g114640	36.413	184	107	3	93	274	43	218	4.83e-40	139

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78706.t1	AT1G28200	71.605	243	61	2	35	277	23	257	8.38e-123	351
MS.gene78706.t1	AT1G28200	71.605	243	61	2	35	277	23	257	8.38e-123	351
MS.gene78706.t1	AT2G22475	72.727	198	53	1	80	276	96	293	7.88e-110	320
MS.gene78706.t1	AT2G22475	72.603	146	39	1	80	224	96	241	1.46e-76	233
MS.gene78706.t1	AT4G40100	57.789	199	47	4	80	276	55	218	6.59e-73	223
MS.gene78706.t1	AT5G13200	41.473	258	130	6	18	270	15	256	3.65e-60	192
MS.gene78706.t1	AT4G01600	42.211	199	108	3	80	274	29	224	1.14e-54	177
MS.gene78706.t1	AT4G01600	42.135	178	101	1	99	274	8	185	1.05e-51	168
MS.gene78706.t1	AT4G01600	41.206	199	105	4	80	274	29	219	1.42e-50	166
MS.gene78706.t1	AT5G23350	34.259	216	133	4	64	274	2	213	5.29e-40	139

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Find 82 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGTTCTTGGAAAATG+GGG	0.592681	3.2:-83988325	MS.gene78706:CDS
AAATACAAGACTCCCATGAC+AGG	0.580237	3.2:+83987008	None:intergenic
AAATTACTCTTAGCAGAAGT+GGG	0.535463	3.2:+83988447	None:intergenic
AACCCACTTTCTTACCAGAC+TGG	0.563921	3.2:-83986954	MS.gene78706:CDS
AACTGGTGCAGGAGAGACAT+AGG	0.514578	3.2:+83988476	None:intergenic
AAGAAGGCTGAAGATCTTGC+TGG	0.439141	3.2:-83988280	MS.gene78706:CDS
AAGATCTTGCTGGAAACATG+TGG	0.657196	3.2:-83988270	MS.gene78706:CDS
ACAAAAGTTCTGGCAGAAGG+TGG	0.648034	3.2:-83987122	MS.gene78706:CDS
ACAGCAGCATCAGCAAAACT+AGG	0.577655	3.2:+83987164	None:intergenic
ACATAGGGATTAGATTCGGC+GGG	0.570583	3.2:+83988492	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACACTACTCCAATACAAT+TGG	-	chr3.2:83987114-83987133	MS.gene78706:CDS	30.0%
AAAGATGTTCTTGGAAAATG+GGG	-	chr3.2:83984717-83984736	MS.gene78706:intron	30.0%
AAATTACTCTTAGCAGAAGT+GGG	+	chr3.2:83984598-83984617	None:intergenic	30.0%
AACACTACTCCAATACAATT+GGG	-	chr3.2:83987115-83987134	MS.gene78706:CDS	30.0%
AAGGAACTCTTAAAAACTCA+GGG	+	chr3.2:83987511-83987530	None:intergenic	30.0%
AAGTGTAGAGATTAATGAGT+TGG	-	chr3.2:83985421-83985440	MS.gene78706:intron	30.0%
AATGACTCCAACTAAATTTC+CGG	+	chr3.2:83986357-83986376	None:intergenic	30.0%
ACTGACATGATTGATATTTG+AGG	+	chr3.2:83986421-83986440	None:intergenic	30.0%
ACTTTGAACCAAACCAATAT+CGG	+	chr3.2:83987551-83987570	None:intergenic	30.0%
ACTTTGAACCAAACCAATAT+TGG	+	chr3.2:83987551-83987570	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	83984325	83988739	83984325	ID=MS.gene78706
chr3.2	mRNA	83984325	83988739	83984325	ID=MS.gene78706.t1;Parent=MS.gene78706
chr3.2	exon	83988454	83988739	83988454	ID=MS.gene78706.t1.exon1;Parent=MS.gene78706.t1
chr3.2	CDS	83988454	83988739	83988454	ID=cds.MS.gene78706.t1;Parent=MS.gene78706.t1
chr3.2	exon	83988263	83988364	83988263	ID=MS.gene78706.t1.exon2;Parent=MS.gene78706.t1
chr3.2	CDS	83988263	83988364	83988263	ID=cds.MS.gene78706.t1;Parent=MS.gene78706.t1
chr3.2	exon	83986926	83987197	83986926	ID=MS.gene78706.t1.exon3;Parent=MS.gene78706.t1
chr3.2	CDS	83986926	83987197	83986926	ID=cds.MS.gene78706.t1;Parent=MS.gene78706.t1
chr3.2	exon	83984325	83984498	83984325	ID=MS.gene78706.t1.exon4;Parent=MS.gene78706.t1
chr3.2	CDS	83984325	83984498	83984325	ID=cds.MS.gene78706.t1;Parent=MS.gene78706.t1

Gene Sequence

>MS.gene78706

ATGAGCAGTGGTGGTGATCAACCTCCTCAAGTTCAACCTCATGTTCAAGCCCAAGTCCAACCCACCAACACAAACACAAACACCAATCCCAAACCCCAAGACTCTGATTCTCACTCTCACACCCCCGATTACGCTCCGTATCCTAAACTCGACCCAAACGACGTCGCACCACCACCACCACCTGTTGCTACCGAATCTCGCGCCACCGATGCTGCCACCACCATGCCCGCCGAATCTAATCCCTATGTCTCTCCTGCACCAGTTCCCGAACCCACTTCTGCTAAGAGTAATTTCTCTCTCTTTTATTTTTTTTCTTTCATATTCATTTCGTGTGTCTCAATTAAAGTAGCTATATCCTATCCTTTGATTTTGCAGATACTTTAGATTCGGTGAAAGATGTTCTTGGAAAATGGGGTAAGAAAGCTGCTGAAGCTACCAAGAAGGCTGAAGATCTTGCTGGAAACATGTGGCAACACTGTATGTATCATCAATCCTAATTCTTTTACTTCCAATTATTGAAATTCATTTAAGCTATTCAATAAATATTTCTTGGATCTTTACATGCACTGTTGTTGATTATTCATTATGTTAATTTTTCATTTTTTTTTTTTTTACATATTGTCAATTTTTACTTTGTATGTGCATGGCTGGGGTTTTTGTAATGAATTTATCTTTTTAATTGTGATCAAGAGAAGATAGAGGCCAATTAGAGAGGATGTGTTTGCATTTCTGGAAATACTCAAAGCAATATTTTTACATTTTTCGTAATACTCAAGCTGTAACACCTGCGATGTTGTATGTGAAGGAAGTGTTGGGCAGTAATGAACCAACACTAGAATAAAATAAGCGTAGCAGAGATGAGGATCATGTGTTCAATGTGTGGTAAGACTAGACATAGTAGAATTAGAGAGAGAGTTGAGGTAGCACATATCGCAGAAAAGATGCTAGAAACTAGGCTTAGGTGCTTTGGAGGTTGGACATGTACAGAGAAGACCTCTAAATTTTGTCGTAATTAGAATAGATTGAATGAAGGGCATTCAAAACACTAGAGAGAGGCAACAAAAGACCTAGAAAATTATAAGAGAAACCATTAAAAAAGTGTAGAGATTAATGAGTTGGATAAGGATATGTATCTGATAGAACATTATGACGTCGTTTGATCCATGTAGCCTACCCCACTTAATTGGATAAAGCTTGGTTGTTGTATTTATGAAATACATTTTCAAAAACTTCTATGATGTCTTTTGTAATGTTTATTTTAAGGGTCTTGTTAACGAGTACCCCCGGGGCACTCTTTAAGGATTTCAAAAGAAGAAATAATTCCATAAAAAAGTCAAATATTTCAATTTCCGATGCTTTGATTACATAAATATTATAAAAAAAGTTGCTATTTAAATGTCTTAAAAAGTGCCCCGGGGGCACCGGTTAACATTTCCCTATTTTAATTAATTTTATAGCTGGAAATGGAAACAGAAAACACAGAAAGTAAACTGGTCTAAACAATTCCATTCATTTGAGCTATTTTGACTTTCCATAAAACAGTGAAAACAGGTCCTAGTTTTGCTGATGCTGCTGTGGGAAGAATTGCTCAGGGAACAAAAGTTCTGGCAGAAGGTGGCTACGAGAAGATCTTTAGACAAACTTTTGAGACTGTACCAGAGGAACAACTTCTTAAAACATATGCATGCTACCTCTCCACCTCTGCTGGACCTGTCATGGGAGTCTTGTATTTGTCAACTGCTAAGCTCGCATTCTGTAGCGATAACCCACTTTCTTACCAGACTGGTGACCAGACTCAATGGAGCTATTATAAGGTAAACTCGAATCGACTCCTTTGCTTGTTACCGCTTTGTTCTTTAATAACTGATTTGGTGCCATGATATGTATACTGCATTACTGCATCATTTTCTATGATTATTTCTCAATTCTAGAGGTAATTATTATTTTAATAGAATTTAATTTCAAGTGCATGTTCCTATAGCAAAATTTTATGAATATTGACACATACTATAAACCCCCAATTTGTGTCCCGGAAATTTAGTTGGAGTCATTAGTCTTAGAGAATGCGAAAATCACACTCTCTTCCCTTGGAACCTCAAATATCAATCATGTCAGTCCTTAACGACTAATATCACCAGCATTTGAGGATTTTTTAATTAACATGAGATTTTTGGAATTCGAAGAAAGGTGCTTCCTGAAATTATTTTGGATGATTACCCTTAGGGATCTTAAGTAATACTCCCTCCGTTTCAAAATGAGTGTCGCTTTAGCCAAAAAAAATTGTTTCAAAATGAGTGTCGCTTTCAGTTTCCAATGCAATAATAACTTTTTCTTTTCAATTGTACCCTCCAATTAATACTCTGCACACTACTTCCAAAGTATTACTTATAAAACTAACCAATAGTTAATAAGGATAATTTGGTAAAATAACCATTCTCTTTCTCTTAATCATTGCATTTCTTAATATGTGTGTAAACACCTAAAACGACACTCATTTTGAAACGGAGGGAGTATCATTGTTTGGTCAGTTCCCATGTTCAGTTATGTTGCCTTTCTTGAAATCAAGGATTCCCTTTTACGGTAGTCTTGCATGTTACCTATGAACCCAGGTACTCCAAATTTGAAGTATGAGTGGGTTTTGTTGCCGTATCCGATACTAGTACATGTCCAATACTCATAGATTTTAGATGTATCTAGGGAAGGGAGTATGCTCCAATATTTTTTTCGAGGAATTACATGTTTATTTTTTTTTGAAGGATTTTTCGAGGAATTATTGACCGCCACATTTTAAACACTACTCCAATACAATTGGGATACATCATAATCTACTTACCTCAGTGCTCCTTGTACAGTCTTTCTCTACCAAAAAAAATAGCTACTTGTTCAACCTTTTTCTTCATGGTGTTGTCTCGTGATAAACTAAGAAGCATGGGCAACTGAATAGAGCAAAGGCTTCTCTTAAATAGGACTAGTGATGCTTTATCTGATTATAACATTTGTTGGGGGGGGGGGATATGCAATTCAACTTTTTAAAAGTTTAAAAATTGTTGATTCTAACGTAAACCTACTACTTTTGGTTTCCTTAACAAGTGCCCTAAGCCCCTAACCCTTAGGGCACTTGTTAGCATGACCCTAAATTTTATAACCTTTTGTTGATGTAACTAGGCTGCATCGTAGCTCAAGCCCTGAGTTTTTAAGAGTTCCTTAGTTCATATATGTTTCCCCGATATTGGTTTGGTTCAAAGTTTTAAATTAAGACTCAAAATATGTCCAGACGCATAATTCTTTTGATGTCGAGGGTATATGCAATTCTTGCAAGATGTGTGCGAGGGCAAGAATATGATAGGGATTAGGACAGATGTGTCTATGCCTTTTTGTTGTGATTAAAAGTATATTTTTATAAATATTGATTGGCATCTACTGAGATGTATCAAATTTACAAGCAATTTATATTAAGATTGGTTAAGAGAACAGAAATAGAATATTGTATTGAGAAATGCAATATTTCTATTTTACAAAAGAAATATTGTAAAATAATATATTAAATTTTAGGGAAATGCTAAAGAGTGCGGAGCATTGGTTAAGAGAACAAAAATAGATATATTGTATTGAGAAATGGTAAAACGTGGTGAATTCAACTTTTTAAAAGTTTAAAAATTGTTGATTCTAGCGTAAACCTACTACTTTTGGTTTCCTTAACAAGCGCCCTACGCCCAACCCTTAGGGCACTTGTTAGCATGATCCTAAATTTTATAACCTTTGTTGATGTAACTAGGCTGCATCGTAGCTCAAGCCATGAGTTTTTAGGAGTTCCTTGCATCTCTCTCTCAAATTCTTATCAAGTATCCTTAGTTCATATATGTTTCCCCAATATTGGTTTGGTTCAAAGTTTTAAATTAAGACTCAAAATATGTCCAGACACATAATTCTTTTGATGTTGAGGGTATAAAGGAGTGGAAGCTAACTAAGGTGGGTTACTTCTTTGCTTGTATCTTATCCCATTCTTACTCATTGTATCCTGAATTCTGGTAGTTAAAGAGTTAAGATTTGACCGTATGATTAATAGATTACATTGAAAATTGAGAATAAATGTTATCTTTGGATGGTGATTAGTGACTACACTTATATGGTGTGTGGTGCTCTGTTTTTGAACGTATCAATGACGAAGAAATGTTATCTCAGTCATATTTTTTCTATTGTTTGGAAATATTTACAAACAAGCTTTTCATCTTATGCATTAGGTGGTCATTCCATTGCATCAGCTGCGAGCAGTGAACCCATCCACAAGCAAAGCCAACCCTACTGAAAAATTTATACAGATTATCTCCGTTGACAATCATGAATTTTGGTTTATGGGCTTTGTGTACTACGACAGCGCTGTTAAACATATTCAAGAAGCATTGCAGTCTCGCTGA

Protein sequence

>MS.gene78706.t1

MSSGGDQPPQVQPHVQAQVQPTNTNTNTNPKPQDSDSHSHTPDYAPYPKLDPNDVAPPPPPVATESRATDAATTMPAESNPYVSPAPVPEPTSAKNTLDSVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKTGPSFADAAVGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLLKTYACYLSTSAGPVMGVLYLSTAKLAFCSDNPLSYQTGDQTQWSYYKVVIPLHQLRAVNPSTSKANPTEKFIQIISVDNHEFWFMGFVYYDSAVKHIQEALQSR