Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78741.t1 | RHN38521.1 | 98.9 | 916 | 10 | 0 | 1 | 916 | 42 | 957 | 0.00E+00 | 1724.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78741.t1 | Q91YE6 | 27.4 | 847 | 591 | 12 | 2 | 834 | 108 | 944 | 3.0e-96 | 354.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78741.t1 | A0A072TJ92 | 98.9 | 916 | 10 | 0 | 1 | 916 | 94 | 1009 | 0.0e+00 | 1724.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene78741 | 0.827215 | 1.77E-54 | -1.69E-46 |
| MS.gene052372 | MS.gene78741 | 0.802444 | 5.59E-49 | -1.69E-46 |
| MS.gene053348 | MS.gene78741 | 0.847262 | 1.29E-59 | -1.69E-46 |
| MS.gene053416 | MS.gene78741 | 0.802428 | 5.64E-49 | -1.69E-46 |
| MS.gene053929 | MS.gene78741 | 0.855772 | 5.04E-62 | -1.69E-46 |
| MS.gene056041 | MS.gene78741 | 0.81265 | 3.81E-51 | -1.69E-46 |
| MS.gene05640 | MS.gene78741 | 0.81408 | 1.85E-51 | -1.69E-46 |
| MS.gene056526 | MS.gene78741 | 0.818768 | 1.65E-52 | -1.69E-46 |
| MS.gene058827 | MS.gene78741 | 0.856846 | 2.44E-62 | -1.69E-46 |
| MS.gene058828 | MS.gene78741 | 0.829619 | 4.65E-55 | -1.69E-46 |
| MS.gene060473 | MS.gene78741 | 0.828165 | 1.05E-54 | -1.69E-46 |
| MS.gene060565 | MS.gene78741 | 0.833648 | 4.73E-56 | -1.69E-46 |
| MS.gene06093 | MS.gene78741 | 0.81441 | 1.56E-51 | -1.69E-46 |
| MS.gene061260 | MS.gene78741 | 0.809932 | 1.48E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78741.t1 | MTR_0010s0220 | 98.908 | 916 | 10 | 0 | 1 | 916 | 94 | 1009 | 0.0 | 1849 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78741.t1 | AT1G26170 | 65.322 | 917 | 313 | 3 | 2 | 916 | 93 | 1006 | 0.0 | 1249 |
Find 204 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTTGGGGACCTGATTC+TGG | 0.088889 | 5.4:+41995449 | MS.gene78741:CDS |
| TTTAAAATTGGTCCAATATA+TGG | 0.192112 | 5.4:-41994717 | None:intergenic |
| ACTTATAGCTGCCGCATTTC+TGG | 0.202207 | 5.4:+41988367 | MS.gene78741:CDS |
| ACAATTTCTTTCTTTGCTTT+AGG | 0.214230 | 5.4:-41991464 | None:intergenic |
| CAATTTCTTTCTTTGCTTTA+GGG | 0.217670 | 5.4:-41991463 | None:intergenic |
| AAATTAGCAAATCAATAAAT+TGG | 0.236212 | 5.4:-41997455 | None:intergenic |
| TTTGCAGATTGTGGCTTTAC+TGG | 0.270659 | 5.4:+42002015 | MS.gene78741:intron |
| GACCCGGAGCTTTCCAAATT+CGG | 0.273719 | 5.4:-41996905 | None:intergenic |
| CGGAAAATTTGCACAGCTAT+TGG | 0.280974 | 5.4:+41983471 | MS.gene78741:CDS |
| AGTCGTACTTCATTTAAAAT+TGG | 0.291004 | 5.4:-41994729 | None:intergenic |
| TGTATGGGCATCACATGTTT+TGG | 0.294205 | 5.4:+41993972 | MS.gene78741:CDS |
| CTACTACTGCTGGTGATTCA+TGG | 0.298096 | 5.4:-41993921 | None:intergenic |
| TCCAATATATGGCAAAATTC+TGG | 0.302488 | 5.4:-41994706 | None:intergenic |
| TTTGACTGTTGATCAAATTC+AGG | 0.302913 | 5.4:-41983560 | None:intergenic |
| GAAGACAAGAAGTTCTTCTT+TGG | 0.303770 | 5.4:+41995435 | MS.gene78741:CDS |
| CAGGCAATCAAAAGCATTCC+TGG | 0.312842 | 5.4:+41994663 | MS.gene78741:intron |
| TTCTTCTATTCTAGAAGTTC+CGG | 0.317559 | 5.4:+41985736 | MS.gene78741:CDS |
| AGTGCATCAATACTGATAAA+AGG | 0.321276 | 5.4:-41993997 | None:intergenic |
| CAGACTGCTAGACCCGAATT+TGG | 0.329444 | 5.4:+41996892 | MS.gene78741:intron |
| TGAAATACAAGAACAAGTTT+TGG | 0.336963 | 5.4:+42002051 | MS.gene78741:CDS |
| CACTGTGCTCATCACTTTGA+AGG | 0.354802 | 5.4:-41995059 | None:intergenic |
| CTCTCTCGATGCAGCATTGA+AGG | 0.355138 | 5.4:+41991309 | MS.gene78741:CDS |
| TTTGATTGTAGGTGAGATAC+AGG | 0.355889 | 5.4:+42001360 | MS.gene78741:intron |
| TGATGAGCACAGTGAAATTC+AGG | 0.356442 | 5.4:+41995068 | MS.gene78741:CDS |
| CTATTCTTGCACCTCTATGC+TGG | 0.358001 | 5.4:+41985536 | MS.gene78741:CDS |
| CAACTAGCAATGAGCTTCTC+AGG | 0.365722 | 5.4:-41997048 | None:intergenic |
| ACCCGGAGCTTTCCAAATTC+GGG | 0.368113 | 5.4:-41996904 | None:intergenic |
| AATTGTCCAACCACAATTAC+CGG | 0.372619 | 5.4:+41991481 | MS.gene78741:CDS |
| CAGGCTGATGGTTTGGTAGC+TGG | 0.373727 | 5.4:+41994847 | MS.gene78741:CDS |
| CTCCGGTAATCCTTAATGTA+TGG | 0.375475 | 5.4:+41993956 | MS.gene78741:CDS |
| GATACAATGGTCAGCAAACT+TGG | 0.378672 | 5.4:-41984699 | None:intergenic |
| GGTTCACCGAGTCTCAAATA+AGG | 0.379517 | 5.4:+41989678 | MS.gene78741:CDS |
| ATGTCCTTCATATAGGAGTC+AGG | 0.381025 | 5.4:+41990908 | MS.gene78741:intron |
| TTGATCAAATTCAGGAGAAA+TGG | 0.383026 | 5.4:-41983552 | None:intergenic |
| TACAAGTGCCCTGGCCTTGT+TGG | 0.384412 | 5.4:+42001405 | MS.gene78741:CDS |
| CTAATTAAAAGTCAATTTGA+TGG | 0.385761 | 5.4:+41985928 | MS.gene78741:CDS |
| GGTTCTTCTCTCAGCGGACT+TGG | 0.386524 | 5.4:+41984638 | MS.gene78741:CDS |
| TCAATAAATTGGCCAACATT+AGG | 0.388017 | 5.4:-41997444 | None:intergenic |
| GATGGCATTGAAAACGATAA+AGG | 0.388649 | 5.4:+42002189 | MS.gene78741:CDS |
| TGCCAGTTCATTGTGCCTGC+TGG | 0.389479 | 5.4:-42001431 | None:intergenic |
| CCTCTTCGTCAGAAATAAAC+TGG | 0.393442 | 5.4:-41988339 | None:intergenic |
| AGTCCGAGGTCATCTGATTA+AGG | 0.395540 | 5.4:+42001462 | MS.gene78741:CDS |
| CCTTGATTCATTTGTTATCC+AGG | 0.398442 | 5.4:+41986155 | MS.gene78741:CDS |
| AAGACAAGAAGTTCTTCTTT+GGG | 0.399743 | 5.4:+41995436 | MS.gene78741:CDS |
| GTTGCCGAGGACTTTCTAAT+AGG | 0.400266 | 5.4:+41990971 | MS.gene78741:CDS |
| GCCCATACATTAAGGATTAC+CGG | 0.402629 | 5.4:-41993958 | None:intergenic |
| TTATATTAGTATTACCAATC+TGG | 0.404005 | 5.4:-41997077 | None:intergenic |
| CTGTTCGCTGTAGTCATATT+GGG | 0.406217 | 5.4:+41986021 | MS.gene78741:intron |
| AGGAGAAATGGCAATAAATC+TGG | 0.408755 | 5.4:-41983540 | None:intergenic |
| CTCATAGTTGATCCAGAATC+AGG | 0.410724 | 5.4:-41995461 | None:intergenic |
| CCAAGAGCAGGCTGATGGTT+TGG | 0.413602 | 5.4:+41994840 | MS.gene78741:CDS |
| TGCTGGATACCAACAAGGCC+AGG | 0.416607 | 5.4:-42001414 | None:intergenic |
| GGTAGCTGGTTCACTAGATC+TGG | 0.419039 | 5.4:+41994861 | MS.gene78741:CDS |
| TGTTGCCGATCCACTTAATC+AGG | 0.421157 | 5.4:+42002448 | MS.gene78741:CDS |
| CAAACCATCAGCCTGCTCTT+GGG | 0.421539 | 5.4:-41994839 | None:intergenic |
| GCTTACTTGATATAGCTTCC+AGG | 0.426572 | 5.4:+41995486 | MS.gene78741:CDS |
| AATCTGAAAATCCAGATGAT+TGG | 0.427466 | 5.4:+41985762 | MS.gene78741:CDS |
| TGCAGCTAATGTCAAAGAAT+TGG | 0.432694 | 5.4:+41987451 | MS.gene78741:CDS |
| ATCCAGCAGGCACAATGAAC+TGG | 0.433720 | 5.4:+42001429 | MS.gene78741:CDS |
| TTGCTTATGTAATGTCAGAA+TGG | 0.434514 | 5.4:+41997508 | MS.gene78741:CDS |
| GAACTTCTGCTGACCATTGT+CGG | 0.435909 | 5.4:+41987315 | MS.gene78741:CDS |
| ATTCTAATACTCCAATCATC+TGG | 0.436948 | 5.4:-41985773 | None:intergenic |
| GCTGTTCGCTGTAGTCATAT+TGG | 0.439499 | 5.4:+41986020 | MS.gene78741:intron |
| CCAAACCATCAGCCTGCTCT+TGG | 0.440796 | 5.4:-41994840 | None:intergenic |
| CCAAACCTCATTAAACGCTT+TGG | 0.441826 | 5.4:-42002271 | None:intergenic |
| TATTCTTGCACCTCTATGCT+GGG | 0.443736 | 5.4:+41985537 | MS.gene78741:CDS |
| CTTTGTTCAATGTCGAATCC+AGG | 0.446257 | 5.4:+42002216 | MS.gene78741:CDS |
| TCCTGGATGTATACATCCAT+TGG | 0.448876 | 5.4:+41994680 | MS.gene78741:CDS |
| TGCTTATGTAATGTCAGAAT+GGG | 0.450809 | 5.4:+41997509 | MS.gene78741:CDS |
| GGAATTACCTTTGTAGGAAG+TGG | 0.453181 | 5.4:-42001635 | None:intergenic |
| AACAGTCAAACCAACTTGAA+TGG | 0.453607 | 5.4:+41983573 | MS.gene78741:CDS |
| CATGTGATGCCCATACATTA+AGG | 0.454675 | 5.4:-41993966 | None:intergenic |
| TGTATGACTGGCCAGAGTTA+TGG | 0.456094 | 5.4:+41983517 | MS.gene78741:CDS |
| GAAGAAAATTGTTCCATCCA+TGG | 0.457213 | 5.4:-41985719 | None:intergenic |
| TCCTTTGCTTAAACCATGGA+TGG | 0.457784 | 5.4:+41985706 | MS.gene78741:CDS |
| GAATTATTGTGTCCCTCAGC+TGG | 0.459552 | 5.4:-41997483 | None:intergenic |
| CTGTAAAAGTAGGTGCCTGC+AGG | 0.462069 | 5.4:+41991423 | MS.gene78741:CDS |
| TGTTCATACAGGATAGTGAT+TGG | 0.466911 | 5.4:+42002151 | MS.gene78741:intron |
| ATTGCATTTACCATCACAAA+TGG | 0.468670 | 5.4:+41996961 | MS.gene78741:CDS |
| GGCAACATTACCCACTGATC+TGG | 0.471007 | 5.4:-42001614 | None:intergenic |
| AAAATACGAGCATATAGAAA+GGG | 0.471374 | 5.4:-41991113 | None:intergenic |
| GACCCGAATTTGGAAAGCTC+CGG | 0.477503 | 5.4:+41996902 | MS.gene78741:CDS |
| ATAGACTATTGAAAGGGCCT+TGG | 0.479005 | 5.4:-41985517 | None:intergenic |
| AAATGTGAGACCTGATTAAG+TGG | 0.483433 | 5.4:-42002458 | None:intergenic |
| TACTTTCCTTATTTGAGACT+CGG | 0.485555 | 5.4:-41989684 | None:intergenic |
| GTTGCTCTTGCAGATAAATC+TGG | 0.488160 | 5.4:+42002550 | MS.gene78741:intron |
| GAAAATAAACCCGGTAATTG+TGG | 0.489782 | 5.4:-41991491 | None:intergenic |
| AAGCTGAGAAAGTGCCCTGC+AGG | 0.491831 | 5.4:-41991438 | None:intergenic |
| TGGCCTTGTTGGTATCCAGC+AGG | 0.492379 | 5.4:+42001416 | MS.gene78741:CDS |
| AACAAAGCAGGTATTAATGT+TGG | 0.493555 | 5.4:-41984675 | None:intergenic |
| CGGTAATTCAAGACTAGCAA+AGG | 0.495011 | 5.4:+41987335 | MS.gene78741:CDS |
| AGGAGCAGAAGATTCATATG+AGG | 0.497613 | 5.4:+41986101 | MS.gene78741:CDS |
| CAGGCAATGCAAGCTGGTGG+AGG | 0.498717 | 5.4:+41989708 | MS.gene78741:CDS |
| TCCATCCATGGTTTAAGCAA+AGG | 0.501710 | 5.4:-41985707 | None:intergenic |
| GTTGAAGACAAGTAACTTGA+AGG | 0.503511 | 5.4:+41990931 | MS.gene78741:CDS |
| TATGAGCAGGCATCTATTGA+AGG | 0.504889 | 5.4:+41986081 | MS.gene78741:CDS |
| TAGTTCCTTTGCTTAAACCA+TGG | 0.506051 | 5.4:+41985702 | MS.gene78741:CDS |
| CATCCATTGCAGTGTATGAC+TGG | 0.510339 | 5.4:+41983505 | MS.gene78741:CDS |
| TCTTCAAATGACAGAACAGC+AGG | 0.511221 | 5.4:+41987493 | MS.gene78741:CDS |
| CCTGGATAACAAATGAATCA+AGG | 0.513415 | 5.4:-41986155 | None:intergenic |
| AGCAAACTTGGGAACAAAGC+AGG | 0.515915 | 5.4:-41984687 | None:intergenic |
| CACAGCTATTGGTATGGCTG+TGG | 0.519420 | 5.4:+41983482 | MS.gene78741:CDS |
| GTTCATACAGGATAGTGATT+GGG | 0.520394 | 5.4:+42002152 | MS.gene78741:intron |
| AAACCATCAGCCTGCTCTTG+GGG | 0.520560 | 5.4:-41994838 | None:intergenic |
| TCCGGTAATCCTTAATGTAT+GGG | 0.521822 | 5.4:+41993957 | MS.gene78741:CDS |
| AGTAGAAAGTGTTATATCTC+CGG | 0.522380 | 5.4:+41993939 | MS.gene78741:CDS |
| CTAAATCAACTCCAGATCAG+TGG | 0.524155 | 5.4:+42001603 | MS.gene78741:CDS |
| AGAGCAACTGCTTGAGTCAG+AGG | 0.525882 | 5.4:+41990759 | MS.gene78741:CDS |
| GTCTGACAAGAGCAGCAACC+AGG | 0.527333 | 5.4:-41997000 | None:intergenic |
| AATAAATCTGGCCATAACTC+TGG | 0.530616 | 5.4:-41983528 | None:intergenic |
| CACATGAGTGTTCCTAATGT+TGG | 0.530655 | 5.4:+41997432 | MS.gene78741:CDS |
| CTCTCTGAGAGTTTATGAGC+AGG | 0.530659 | 5.4:+41986068 | MS.gene78741:CDS |
| GTTCTTACAGCCCCAAGAGC+AGG | 0.533453 | 5.4:+41994828 | MS.gene78741:intron |
| CTAATTTCAATTCCAGCTGA+GGG | 0.534239 | 5.4:+41997471 | MS.gene78741:CDS |
| AGATGATTGGAGTATTAGAA+TGG | 0.534241 | 5.4:+41985775 | MS.gene78741:CDS |
| GCTAATTTCAATTCCAGCTG+AGG | 0.535250 | 5.4:+41997470 | MS.gene78741:CDS |
| ACCAATGGATGTATACATCC+AGG | 0.537520 | 5.4:-41994681 | None:intergenic |
| AACATTGCAAGAAGCAGTAA+AGG | 0.537541 | 5.4:+41993755 | MS.gene78741:CDS |
| TGATGCACTTGAAGTTCTTG+AGG | 0.538421 | 5.4:+41994011 | MS.gene78741:CDS |
| TGGGAAGAAGTTCGAACAGA+TGG | 0.540869 | 5.4:+42002171 | MS.gene78741:CDS |
| ACCCGAATTTGGAAAGCTCC+GGG | 0.544527 | 5.4:+41996903 | MS.gene78741:CDS |
| ATAACACTTTCTACTACTGC+TGG | 0.545513 | 5.4:-41993931 | None:intergenic |
| AAGAACTTCTTGTCTTCCCC+CGG | 0.548507 | 5.4:-41995429 | None:intergenic |
| TGTCCTTCATATAGGAGTCA+GGG | 0.551884 | 5.4:+41990909 | MS.gene78741:intron |
| GGCAAAATTCTGGAAACCAA+TGG | 0.553687 | 5.4:-41994696 | None:intergenic |
| TTGTTTACCTCCATTCAAGT+TGG | 0.558098 | 5.4:-41983583 | None:intergenic |
| GTATGAAAATCTTGAAGCAA+TGG | 0.562592 | 5.4:+42002248 | MS.gene78741:CDS |
| AATGGCCAAAGCGTTTAATG+AGG | 0.562622 | 5.4:+42002266 | MS.gene78741:CDS |
| TGCAAGAATAGACTATTGAA+AGG | 0.562625 | 5.4:-41985524 | None:intergenic |
| AAGTAGCAGGCAATGCAAGC+TGG | 0.562698 | 5.4:+41989702 | MS.gene78741:CDS |
| CCAGTTTATTTCTGACGAAG+AGG | 0.563408 | 5.4:+41988339 | MS.gene78741:CDS |
| ATTGCTTTGATTACATCACC+AGG | 0.564968 | 5.4:-41995000 | None:intergenic |
| ATAAACCCGGTAATTGTGGT+TGG | 0.565528 | 5.4:-41991487 | None:intergenic |
| GCAAGAATAGACTATTGAAA+GGG | 0.566753 | 5.4:-41985523 | None:intergenic |
| GACCATTGTATCCTCTCCGC+AGG | 0.567627 | 5.4:+41984710 | MS.gene78741:CDS |
| CAGCCCCAAGAGCAGGCTGA+TGG | 0.567848 | 5.4:+41994835 | MS.gene78741:intron |
| TTCGTCAGAAATAAACTGGT+TGG | 0.569774 | 5.4:-41988335 | None:intergenic |
| GCTCTTAGATCACATTTGCA+AGG | 0.570101 | 5.4:+42002622 | MS.gene78741:CDS |
| TAAATCAACTCCAGATCAGT+GGG | 0.571102 | 5.4:+42001604 | MS.gene78741:CDS |
| ATGACCTATTAGAAAGTCCT+CGG | 0.571714 | 5.4:-41990975 | None:intergenic |
| TGACATTAGATGACCCTCAT+CGG | 0.572066 | 5.4:+41983451 | MS.gene78741:CDS |
| AATTTGCACAGCTATTGGTA+TGG | 0.574945 | 5.4:+41983476 | MS.gene78741:CDS |
| TGATTGGAGTATTAGAATGG+AGG | 0.575472 | 5.4:+41985778 | MS.gene78741:CDS |
| GGCTGTACATATACGCGACC+TGG | 0.575685 | 5.4:+41996982 | MS.gene78741:CDS |
| TTGATTGTAGGTGAGATACA+GGG | 0.579741 | 5.4:+42001361 | MS.gene78741:intron |
| TCTCAAATAAGGAAAGTAGC+AGG | 0.582513 | 5.4:+41989689 | MS.gene78741:CDS |
| AGAAATGCGGCAGCTATAAG+TGG | 0.582924 | 5.4:-41988365 | None:intergenic |
| AGCTTTGTACAGAATGCCCC+TGG | 0.583251 | 5.4:+41994982 | MS.gene78741:intron |
| AAAAGTTACTACAAGTGCCC+TGG | 0.583645 | 5.4:+42001396 | MS.gene78741:CDS |
| GGAGCAGAAGATTCATATGA+GGG | 0.584909 | 5.4:+41986102 | MS.gene78741:CDS |
| ATTCTTGCACCTCTATGCTG+GGG | 0.588033 | 5.4:+41985538 | MS.gene78741:CDS |
| AGGCAATGCAAGCTGGTGGA+GGG | 0.591073 | 5.4:+41989709 | MS.gene78741:CDS |
| TTGCAAGAAGCAGTAAAGGC+AGG | 0.592435 | 5.4:+41993759 | MS.gene78741:CDS |
| TTCTGACATTACATAAGCAA+AGG | 0.593598 | 5.4:-41997505 | None:intergenic |
| GCTGGATACCAACAAGGCCA+GGG | 0.593784 | 5.4:-42001413 | None:intergenic |
| TGCTTTGATTACATCACCAG+GGG | 0.594071 | 5.4:-41994998 | None:intergenic |
| TGGCCAGTCATACACTGCAA+TGG | 0.594433 | 5.4:-41983508 | None:intergenic |
| AGGCCTCCACCTGTAAAAGT+AGG | 0.596679 | 5.4:+41991413 | MS.gene78741:intron |
| TTGCTTTGATTACATCACCA+GGG | 0.596935 | 5.4:-41994999 | None:intergenic |
| GAGGGAAGATATGATTCTGA+TGG | 0.599433 | 5.4:+41986120 | MS.gene78741:CDS |
| TCTGGTAACAATGTTACTGA+AGG | 0.600622 | 5.4:+41994879 | MS.gene78741:CDS |
| TGTAAAAGTAGGTGCCTGCA+GGG | 0.600843 | 5.4:+41991424 | MS.gene78741:CDS |
| AACTAGCAATGAGCTTCTCA+GGG | 0.601809 | 5.4:-41997047 | None:intergenic |
| GATTGAGCAGATTGTTGCCG+AGG | 0.605984 | 5.4:+41990958 | MS.gene78741:CDS |
| AGCGGACTTGGATGATAGAA+CGG | 0.606440 | 5.4:+41984650 | MS.gene78741:CDS |
| AATGTTGCCACTTCCTACAA+AGG | 0.607810 | 5.4:+42001628 | MS.gene78741:CDS |
| AAATCTGGTAAATTACCTTG+TGG | 0.609214 | 5.4:+42002565 | MS.gene78741:CDS |
| TAGTCTTGAATTACCGACAA+TGG | 0.610471 | 5.4:-41987328 | None:intergenic |
| ATGATTAAGAAGATCTGTGA+GGG | 0.611931 | 5.4:-41991516 | None:intergenic |
| TGTCATGTGAAGTCTTGCAC+AGG | 0.612790 | 5.4:+42001560 | MS.gene78741:intron |
| TCATAGATGCTGCAAAACAA+TGG | 0.615800 | 5.4:+41989657 | MS.gene78741:CDS |
| ATATGTACAGCCATTTGTGA+TGG | 0.616023 | 5.4:-41996971 | None:intergenic |
| GTGAGGGATGAAAATAAACC+CGG | 0.619195 | 5.4:-41991500 | None:intergenic |
| TGAGACCTGATTAAGTGGAT+CGG | 0.620057 | 5.4:-42002453 | None:intergenic |
| ATTGTCCAACCACAATTACC+GGG | 0.620887 | 5.4:+41991482 | MS.gene78741:CDS |
| AGATATATGACACATACATA+CGG | 0.624742 | 5.4:+41985493 | MS.gene78741:intron |
| GCATGGAGCTATGAAATGCT+TGG | 0.625135 | 5.4:+41984617 | MS.gene78741:CDS |
| TTGCTCTGAAAGAGATGACA+AGG | 0.626749 | 5.4:-41990743 | None:intergenic |
| TAGCAGGCAATGCAAGCTGG+TGG | 0.628273 | 5.4:+41989705 | MS.gene78741:CDS |
| TTCTTGCACCTCTATGCTGG+GGG | 0.628333 | 5.4:+41985539 | MS.gene78741:CDS |
| AGTTGCTAAATTCTCCTCTG+TGG | 0.630900 | 5.4:+41991142 | MS.gene78741:CDS |
| ATACAATGGTCAGCAAACTT+GGG | 0.632586 | 5.4:-41984698 | None:intergenic |
| TCAGAATGGGCTAAGCAACA+AGG | 0.637347 | 5.4:+41997522 | MS.gene78741:CDS |
| ATGCTTGGTTCTTCTCTCAG+CGG | 0.638428 | 5.4:+41984632 | MS.gene78741:CDS |
| AGACAAGAAGTTCTTCTTTG+GGG | 0.643813 | 5.4:+41995437 | MS.gene78741:CDS |
| CAAAATTATAACCTGCGGAG+AGG | 0.645080 | 5.4:-41984721 | None:intergenic |
| AAATACGAGCATATAGAAAG+GGG | 0.647257 | 5.4:-41991112 | None:intergenic |
| AGTCAAACCAACTTGAATGG+AGG | 0.659858 | 5.4:+41983576 | MS.gene78741:CDS |
| TGATTGTAGGTGAGATACAG+GGG | 0.661610 | 5.4:+42001362 | MS.gene78741:intron |
| GTGCCTGCTGGATACCAACA+AGG | 0.666551 | 5.4:-42001419 | None:intergenic |
| ATACCTTAATCAGATGACCT+CGG | 0.671880 | 5.4:-42001465 | None:intergenic |
| CTTAATGTACAGATAAGCAG+CGG | 0.672779 | 5.4:+41991274 | MS.gene78741:intron |
| TGACACATACATACGGACCA+AGG | 0.674546 | 5.4:+41985500 | MS.gene78741:CDS |
| ATCGGATGAAACATTGCACA+TGG | 0.675364 | 5.4:+41993725 | MS.gene78741:CDS |
| AAAGTTACACACCAGAAATG+CGG | 0.683009 | 5.4:-41988378 | None:intergenic |
| GATTGTAGGTGAGATACAGG+GGG | 0.690133 | 5.4:+42001363 | MS.gene78741:intron |
| AACCTGCGGAGAGGATACAA+TGG | 0.703087 | 5.4:-41984712 | None:intergenic |
| CATGATTAAGAAGATCTGTG+AGG | 0.706913 | 5.4:-41991517 | None:intergenic |
| ACAGAAAATGGTTACCACAG+AGG | 0.708133 | 5.4:-41991156 | None:intergenic |
| TAGTCATATTGGGACCACTG+TGG | 0.722030 | 5.4:+41986031 | MS.gene78741:intron |
| ATGTCAATAGAAGCATTCTG+CGG | 0.723924 | 5.4:-41983434 | None:intergenic |
| AGTTAGCAAAGAAATCCACA+AGG | 0.739666 | 5.4:-42002580 | None:intergenic |
| CTGCTCATAAACTCTCAGAG+AGG | 0.745045 | 5.4:-41986067 | None:intergenic |
| GAGACAAATGTATTCCACAG+TGG | 0.761708 | 5.4:-41986045 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 41983426 | 42002643 | 41983426 | ID=MS.gene78741 |
| chr5.4 | mRNA | 41983426 | 42002643 | 41983426 | ID=MS.gene78741.t1;Parent=MS.gene78741 |
| chr5.4 | exon | 41983426 | 41983597 | 41983426 | ID=MS.gene78741.t1.exon1;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 41983426 | 41983597 | 41983426 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| chr5.4 | exon | 41984616 | 41984731 | 41984616 | ID=MS.gene78741.t1.exon2;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 41984616 | 41984731 | 41984616 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| chr5.4 | exon | 41985495 | 41985581 | 41985495 | ID=MS.gene78741.t1.exon3;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 41985495 | 41985581 | 41985495 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| chr5.4 | exon | 41985683 | 41985799 | 41985683 | ID=MS.gene78741.t1.exon4;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 41985683 | 41985799 | 41985683 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| chr5.4 | exon | 41985886 | 41985949 | 41985886 | ID=MS.gene78741.t1.exon5;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 41985886 | 41985949 | 41985886 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| chr5.4 | exon | 41986034 | 41986176 | 41986034 | ID=MS.gene78741.t1.exon6;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 41986034 | 41986176 | 41986034 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| chr5.4 | exon | 41987309 | 41987356 | 41987309 | ID=MS.gene78741.t1.exon7;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 41987309 | 41987356 | 41987309 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| chr5.4 | exon | 41987446 | 41987514 | 41987446 | ID=MS.gene78741.t1.exon8;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 41987446 | 41987514 | 41987446 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| chr5.4 | exon | 41988313 | 41988388 | 41988313 | ID=MS.gene78741.t1.exon9;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 41988313 | 41988388 | 41988313 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| chr5.4 | exon | 41989600 | 41989730 | 41989600 | ID=MS.gene78741.t1.exon10;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 41989600 | 41989730 | 41989600 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| chr5.4 | exon | 41990721 | 41990780 | 41990721 | ID=MS.gene78741.t1.exon11;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 41990721 | 41990780 | 41990721 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| chr5.4 | exon | 41990923 | 41990992 | 41990923 | ID=MS.gene78741.t1.exon12;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 41990923 | 41990992 | 41990923 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| chr5.4 | exon | 41991099 | 41991163 | 41991099 | ID=MS.gene78741.t1.exon13;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 41991099 | 41991163 | 41991099 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| chr5.4 | exon | 41991286 | 41991347 | 41991286 | ID=MS.gene78741.t1.exon14;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 41991286 | 41991347 | 41991286 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| chr5.4 | exon | 41991415 | 41991538 | 41991415 | ID=MS.gene78741.t1.exon15;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 41991415 | 41991538 | 41991415 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| chr5.4 | exon | 41993723 | 41993780 | 41993723 | ID=MS.gene78741.t1.exon16;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 41993723 | 41993780 | 41993723 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| chr5.4 | exon | 41993920 | 41994032 | 41993920 | ID=MS.gene78741.t1.exon17;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 41993920 | 41994032 | 41993920 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| chr5.4 | exon | 41994666 | 41994743 | 41994666 | ID=MS.gene78741.t1.exon18;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 41994666 | 41994743 | 41994666 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| chr5.4 | exon | 41994838 | 41994900 | 41994838 | ID=MS.gene78741.t1.exon19;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 41994838 | 41994900 | 41994838 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| chr5.4 | exon | 41994994 | 41995089 | 41994994 | ID=MS.gene78741.t1.exon20;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 41994994 | 41995089 | 41994994 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| chr5.4 | exon | 41995398 | 41995507 | 41995398 | ID=MS.gene78741.t1.exon21;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 41995398 | 41995507 | 41995398 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| chr5.4 | exon | 41996895 | 41997084 | 41996895 | ID=MS.gene78741.t1.exon22;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 41996895 | 41997084 | 41996895 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| chr5.4 | exon | 41997429 | 41997543 | 41997429 | ID=MS.gene78741.t1.exon23;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 41997429 | 41997543 | 41997429 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| chr5.4 | exon | 42001371 | 42001483 | 42001371 | ID=MS.gene78741.t1.exon24;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 42001371 | 42001483 | 42001371 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| chr5.4 | exon | 42001572 | 42001649 | 42001572 | ID=MS.gene78741.t1.exon25;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 42001572 | 42001649 | 42001572 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| chr5.4 | exon | 42002022 | 42002087 | 42002022 | ID=MS.gene78741.t1.exon26;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 42002022 | 42002087 | 42002022 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| chr5.4 | exon | 42002162 | 42002287 | 42002162 | ID=MS.gene78741.t1.exon27;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 42002162 | 42002287 | 42002162 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| chr5.4 | exon | 42002413 | 42002469 | 42002413 | ID=MS.gene78741.t1.exon28;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 42002413 | 42002469 | 42002413 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| chr5.4 | exon | 42002563 | 42002643 | 42002563 | ID=MS.gene78741.t1.exon29;Parent=MS.gene78741.t1 |
| chr5.4 | CDS | 42002563 | 42002643 | 42002563 | ID=cds.MS.gene78741.t1;Parent=MS.gene78741.t1 |
| Gene Sequence |
| Protein sequence |
