Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78984.t1 | XP_024634267.1 | 97.8 | 136 | 3 | 0 | 4 | 139 | 16 | 151 | 2.00E-72 | 281.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78984.t1 | Q8LBZ4 | 66.4 | 131 | 44 | 0 | 5 | 135 | 173 | 303 | 5.6e-47 | 188.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78984.t1 | A0A396IU62 | 97.8 | 136 | 3 | 0 | 4 | 139 | 16 | 151 | 1.5e-72 | 281.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050868 | MS.gene78984 | 0.825743 | 3.97E-54 | -1.69E-46 |
MS.gene050871 | MS.gene78984 | 0.824693 | 7.03E-54 | -1.69E-46 |
MS.gene051509 | MS.gene78984 | 0.800995 | 1.11E-48 | -1.69E-46 |
MS.gene052966 | MS.gene78984 | 0.817967 | 2.51E-52 | -1.69E-46 |
MS.gene053824 | MS.gene78984 | 0.805399 | 1.36E-49 | -1.69E-46 |
MS.gene05494 | MS.gene78984 | 0.800839 | 1.19E-48 | -1.69E-46 |
MS.gene055722 | MS.gene78984 | 0.808012 | 3.82E-50 | -1.69E-46 |
MS.gene056504 | MS.gene78984 | 0.800405 | 1.46E-48 | -1.69E-46 |
MS.gene060837 | MS.gene78984 | 0.801995 | 6.92E-49 | -1.69E-46 |
MS.gene06097 | MS.gene78984 | 0.818918 | 1.53E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78984.t1 | MTR_3g085620 | 97.778 | 135 | 3 | 0 | 5 | 139 | 43 | 177 | 3.78e-99 | 282 |
MS.gene78984.t1 | MTR_1g052405 | 70.455 | 132 | 39 | 0 | 5 | 136 | 195 | 326 | 6.11e-67 | 206 |
MS.gene78984.t1 | MTR_1g052380 | 60.150 | 133 | 52 | 1 | 5 | 136 | 61 | 193 | 1.09e-55 | 174 |
MS.gene78984.t1 | MTR_1g492730 | 51.493 | 134 | 63 | 1 | 5 | 136 | 170 | 303 | 3.30e-47 | 154 |
MS.gene78984.t1 | MTR_4g014750 | 29.333 | 150 | 88 | 4 | 3 | 135 | 80 | 228 | 1.63e-13 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78984.t1 | AT3G57810 | 66.412 | 131 | 44 | 0 | 5 | 135 | 173 | 303 | 5.03e-62 | 193 |
MS.gene78984.t1 | AT3G57810 | 66.412 | 131 | 44 | 0 | 5 | 135 | 173 | 303 | 5.03e-62 | 193 |
MS.gene78984.t1 | AT3G57810 | 66.412 | 131 | 44 | 0 | 5 | 135 | 173 | 303 | 5.03e-62 | 193 |
MS.gene78984.t1 | AT2G38025 | 29.560 | 159 | 82 | 6 | 4 | 136 | 57 | 211 | 3.46e-13 | 64.3 |
MS.gene78984.t1 | AT2G38025 | 29.560 | 159 | 82 | 6 | 4 | 136 | 80 | 234 | 4.58e-13 | 64.3 |
MS.gene78984.t1 | AT3G57810 | 63.415 | 41 | 15 | 0 | 5 | 45 | 173 | 213 | 2.15e-11 | 59.3 |
Find 32 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGCTGCATGACCACTGTTAT+AGG | 0.279175 | 3.1:-68363679 | None:intergenic |
CCATCATAGATGACTCTAAT+AGG | 0.322276 | 3.1:-68363763 | None:intergenic |
GCTGAATACGGCCAGGAGTA+TGG | 0.331664 | 3.1:+68363730 | MS.gene78984:CDS |
AGAGTCATCTATGATGGTTT+TGG | 0.346483 | 3.1:+68363769 | MS.gene78984:CDS |
AAATGAGAAAGTCTCAAGTA+TGG | 0.374440 | 3.1:+68363485 | MS.gene78984:CDS |
CTTTCTCATTTGAACTGTAT+AGG | 0.374650 | 3.1:-68363473 | None:intergenic |
TGCGACGACATGAGAAGTTC+AGG | 0.431577 | 3.1:-68363517 | None:intergenic |
TGGGTCCCCTCTTCTGAGGC+AGG | 0.435858 | 3.1:-68362337 | None:intergenic |
CTTAAAATTATAGCTGAATA+CGG | 0.456379 | 3.1:+68363718 | MS.gene78984:CDS |
CCTATTAGAGTCATCTATGA+TGG | 0.458058 | 3.1:+68363763 | MS.gene78984:CDS |
ATGTTTAGATCTGTGGTCTA+TGG | 0.466866 | 3.1:+68362312 | MS.gene78984:CDS |
GCCTGGTGAGACTTGGAGGT+GGG | 0.474250 | 3.1:-68362356 | None:intergenic |
GATTCTCCTTTCCATACTCC+TGG | 0.503121 | 3.1:-68363741 | None:intergenic |
AATGAGAAAGTCTCAAGTAT+GGG | 0.519563 | 3.1:+68363486 | MS.gene78984:CDS |
ATATTGTACAGGTTTCTTGA+AGG | 0.524544 | 3.1:+68363439 | MS.gene78984:intron |
AACATACATCTACCATCTCC+TGG | 0.526181 | 3.1:-68362294 | None:intergenic |
AGAGGAGAGTAGACACTGAA+TGG | 0.540031 | 3.1:+68362653 | MS.gene78984:CDS |
TGCCTGGTGAGACTTGGAGG+TGG | 0.552260 | 3.1:-68362357 | None:intergenic |
AATTATAGCTGAATACGGCC+AGG | 0.560297 | 3.1:+68363723 | MS.gene78984:CDS |
ATTTAGGATGCCTATAACAG+TGG | 0.560992 | 3.1:+68363669 | MS.gene78984:intron |
GAGGTGGGTCCCCTCTTCTG+AGG | 0.564647 | 3.1:-68362341 | None:intergenic |
ATGGTGCCTGCCTCAGAAGA+GGG | 0.565144 | 3.1:+68362331 | MS.gene78984:CDS |
ACCCACCTCCAAGTCTCACC+AGG | 0.567674 | 3.1:+68362355 | MS.gene78984:CDS |
GTTATAGGAATACCAGGAGA+TGG | 0.570785 | 3.1:+68362282 | MS.gene78984:intron |
TATGGTGCCTGCCTCAGAAG+AGG | 0.606464 | 3.1:+68362330 | MS.gene78984:CDS |
AACACTTCAATACATCATAG+TGG | 0.613291 | 3.1:-68363792 | None:intergenic |
TAGATGTATGTTTAGATCTG+TGG | 0.614910 | 3.1:+68362305 | MS.gene78984:CDS |
ATGAGAAAGTCTCAAGTATG+GGG | 0.628007 | 3.1:+68363487 | MS.gene78984:CDS |
TTGTGGACGAGTTCATCAAG+AGG | 0.642968 | 3.1:+68362635 | MS.gene78984:CDS |
TGGTGCCTGCCTCAGAAGAG+GGG | 0.646066 | 3.1:+68362332 | MS.gene78984:CDS |
AGAAAGTCTCAAGTATGGGG+AGG | 0.654651 | 3.1:+68363490 | MS.gene78984:CDS |
ATACGGCCAGGAGTATGGAA+AGG | 0.662932 | 3.1:+68363735 | MS.gene78984:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGCATATAATCAAAATATTA+GGG | - | chr3.1:68362925-68362944 | None:intergenic | 15.0% |
!!! | TTGAAACATTTTTTTGTTAT+AGG | + | chr3.1:68362267-68362286 | MS.gene78984:intron | 15.0% |
!! | AATAGAGCACAAATTATATA+TGG | + | chr3.1:68362538-68362557 | MS.gene78984:intron | 20.0% |
!! | ATAGAAACGATAAATTGTTT+AGG | - | chr3.1:68363163-68363182 | None:intergenic | 20.0% |
!! | ATGTAACAATGTTATAATCT+AGG | - | chr3.1:68363348-68363367 | None:intergenic | 20.0% |
!! | CTTAAAATTATAGCTGAATA+CGG | + | chr3.1:68363718-68363737 | MS.gene78984:CDS | 20.0% |
!! | GATATAAATATCCACAATAT+AGG | - | chr3.1:68362950-68362969 | None:intergenic | 20.0% |
!! | GTGCATATAATCAAAATATT+AGG | - | chr3.1:68362926-68362945 | None:intergenic | 20.0% |
!! | TAGAAACGATAAATTGTTTA+GGG | - | chr3.1:68363162-68363181 | None:intergenic | 20.0% |
!! | TTGAAATTATGTAGTGTAAT+TGG | + | chr3.1:68362481-68362500 | MS.gene78984:intron | 20.0% |
!!! | AAACAAAACATATTTTTCCA+TGG | + | chr3.1:68363079-68363098 | MS.gene78984:intron | 20.0% |
!!! | AAATATGTTTTGTTTTGTCA+CGG | - | chr3.1:68363074-68363093 | None:intergenic | 20.0% |
!!! | AAATTTGTAACCAAACTTTT+TGG | - | chr3.1:68362697-68362716 | None:intergenic | 20.0% |
!!! | AGCTATAATTTTAAGGTTAT+TGG | - | chr3.1:68363713-68363732 | None:intergenic | 20.0% |
! | AGAAACGATAAATTGTTTAG+GGG | - | chr3.1:68363161-68363180 | None:intergenic | 25.0% |
! | ATAATCAAAATATTAGGGAC+TGG | - | chr3.1:68362920-68362939 | None:intergenic | 25.0% |
! | ATAGAAAATAAAAGGTCAGA+GGG | - | chr3.1:68363202-68363221 | None:intergenic | 25.0% |
! | ATGCATTTGAATCTTTATGA+TGG | + | chr3.1:68362591-68362610 | MS.gene78984:intron | 25.0% |
! | CTATCTTTAACCAAAAAGTT+TGG | + | chr3.1:68362684-68362703 | MS.gene78984:intron | 25.0% |
! | GGATATTTATATCTTAAGTG+AGG | + | chr3.1:68362957-68362976 | MS.gene78984:intron | 25.0% |
! | GTGTTTAATTCATATTGTAC+AGG | + | chr3.1:68363428-68363447 | MS.gene78984:intron | 25.0% |
! | TCTGAGTCATAGAAAATAAA+AGG | - | chr3.1:68363210-68363229 | None:intergenic | 25.0% |
! | TGCATTTGAATCTTTATGAT+GGG | + | chr3.1:68362592-68362611 | MS.gene78984:intron | 25.0% |
! | TTTAATCATGTTGTGTCTTA+TGG | + | chr3.1:68363646-68363665 | MS.gene78984:intron | 25.0% |
!! | AACATATTTTTCCATGGAAA+TGG | + | chr3.1:68363085-68363104 | MS.gene78984:intron | 25.0% |
!! | AGTTCATTGGAATAATTTTG+AGG | + | chr3.1:68362824-68362843 | MS.gene78984:intron | 25.0% |
!! | ATTATCATACAAGCAAGTTT+TGG | + | chr3.1:68362772-68362791 | MS.gene78984:intron | 25.0% |
!! | CGTATTCAGCTATAATTTTA+AGG | - | chr3.1:68363720-68363739 | None:intergenic | 25.0% |
!! | TAGTATAATGAGACTGATTT+GGG | + | chr3.1:68362731-68362750 | MS.gene78984:intron | 25.0% |
!!! | ACTACTACTATTTTTGTCAA+AGG | - | chr3.1:68363000-68363019 | None:intergenic | 25.0% |
!!! | AGTTTTGGTTCATTTTTTTC+TGG | + | chr3.1:68362787-68362806 | MS.gene78984:intron | 25.0% |
!!! | TTTTTTGTTATAGGAATACC+AGG | + | chr3.1:68362276-68362295 | MS.gene78984:intron | 25.0% |
AAATGAGAAAGTCTCAAGTA+TGG | + | chr3.1:68363485-68363504 | MS.gene78984:CDS | 30.0% | |
AACACTTCAATACATCATAG+TGG | - | chr3.1:68363795-68363814 | None:intergenic | 30.0% | |
AATGAGAAAGTCTCAAGTAT+GGG | + | chr3.1:68363486-68363505 | MS.gene78984:CDS | 30.0% | |
AATGTTCTTGTCATGTATCT+CGG | - | chr3.1:68363617-68363636 | None:intergenic | 30.0% | |
ACATTATTATTTGCAGGTTG+TGG | + | chr3.1:68362618-68362637 | MS.gene78984:intron | 30.0% | |
ATAAACATGATGTTCTAGCA+AGG | - | chr3.1:68362894-68362913 | None:intergenic | 30.0% | |
ATATTGTACAGGTTTCTTGA+AGG | + | chr3.1:68363439-68363458 | MS.gene78984:intron | 30.0% | |
ATGTTGTGTCTTATGGATTT+AGG | + | chr3.1:68363653-68363672 | MS.gene78984:intron | 30.0% | |
CATAGAAAATAAAAGGTCAG+AGG | - | chr3.1:68363203-68363222 | None:intergenic | 30.0% | |
CTAGTATAATGAGACTGATT+TGG | + | chr3.1:68362730-68362749 | MS.gene78984:intron | 30.0% | |
CTTTCTCATTTGAACTGTAT+AGG | - | chr3.1:68363476-68363495 | None:intergenic | 30.0% | |
GGGAAAACATTATTATTTGC+AGG | + | chr3.1:68362612-68362631 | MS.gene78984:intron | 30.0% | |
TAGAAAATAAAAGGTCAGAG+GGG | - | chr3.1:68363201-68363220 | None:intergenic | 30.0% | |
TAGATGTATGTTTAGATCTG+TGG | + | chr3.1:68362305-68362324 | MS.gene78984:CDS | 30.0% | |
TCATAAGACTCTCCATTAAA+CGG | + | chr3.1:68363232-68363251 | MS.gene78984:intron | 30.0% | |
TTATATGCACACCTATATTG+TGG | + | chr3.1:68362936-68362955 | MS.gene78984:intron | 30.0% | |
! | AAAAGGTGAGAGATTTTCAT+CGG | - | chr3.1:68363118-68363137 | None:intergenic | 30.0% |
!! | GATTAGTCTGTCAATTACTT+TGG | - | chr3.1:68362409-68362428 | None:intergenic | 30.0% |
!!! | AACAGCAAGTTTTAGTTCAT+TGG | + | chr3.1:68362811-68362830 | MS.gene78984:intron | 30.0% |
!!! | ATGTAGTGTAATTGGTTTTC+TGG | + | chr3.1:68362489-68362508 | MS.gene78984:intron | 30.0% |
!!! | ATTTTGAGGTCAATCATGTT+AGG | + | chr3.1:68362838-68362857 | MS.gene78984:intron | 30.0% |
ATCATACTTGTGTTGCAACT+CGG | - | chr3.1:68363023-68363042 | None:intergenic | 35.0% | |
ATGAGAAAGTCTCAAGTATG+GGG | + | chr3.1:68363487-68363506 | MS.gene78984:CDS | 35.0% | |
ATGTTTAGATCTGTGGTCTA+TGG | + | chr3.1:68362312-68362331 | MS.gene78984:CDS | 35.0% | |
CCATCATAGATGACTCTAAT+AGG | - | chr3.1:68363766-68363785 | None:intergenic | 35.0% | |
CCTATTAGAGTCATCTATGA+TGG | + | chr3.1:68363763-68363782 | MS.gene78984:CDS | 35.0% | |
! | AGAGTCATCTATGATGGTTT+TGG | + | chr3.1:68363769-68363788 | MS.gene78984:CDS | 35.0% |
! | ATTTAGGATGCCTATAACAG+TGG | + | chr3.1:68363669-68363688 | MS.gene78984:intron | 35.0% |
! | TTTTGTACCACTTCATGGTA+AGG | - | chr3.1:68363323-68363342 | None:intergenic | 35.0% |
!! | AATGAGACTGATTTGGGAAT+GGG | + | chr3.1:68362737-68362756 | MS.gene78984:intron | 35.0% |
!! | TAATGAGACTGATTTGGGAA+TGG | + | chr3.1:68362736-68362755 | MS.gene78984:intron | 35.0% |
AACATACATCTACCATCTCC+TGG | - | chr3.1:68362297-68362316 | None:intergenic | 40.0% | |
AATTATAGCTGAATACGGCC+AGG | + | chr3.1:68363723-68363742 | MS.gene78984:CDS | 40.0% | |
ACCAGATCATCTCCGTTTAA+TGG | - | chr3.1:68363247-68363266 | None:intergenic | 40.0% | |
ATCTCGGTCTTCTTAACACT+GGG | - | chr3.1:68363601-68363620 | None:intergenic | 40.0% | |
CTGAATTCCTTACCATGAAG+TGG | + | chr3.1:68363313-68363332 | MS.gene78984:intron | 40.0% | |
GTTATAGGAATACCAGGAGA+TGG | + | chr3.1:68362282-68362301 | MS.gene78984:intron | 40.0% | |
TATCTCGGTCTTCTTAACAC+TGG | - | chr3.1:68363602-68363621 | None:intergenic | 40.0% | |
TCCATTAAACGGAGATGATC+TGG | + | chr3.1:68363243-68363262 | MS.gene78984:intron | 40.0% | |
! | AGGCATTTTGTACCACTTCA+TGG | - | chr3.1:68363328-68363347 | None:intergenic | 40.0% |
! | ATCTGCAAGTTCTTTTTGCC+TGG | - | chr3.1:68362376-68362395 | None:intergenic | 40.0% |
!!! | GTGTAATTGGTTTTCTGGTG+TGG | + | chr3.1:68362494-68362513 | MS.gene78984:intron | 40.0% |
AGAAAGTCTCAAGTATGGGG+AGG | + | chr3.1:68363490-68363509 | MS.gene78984:CDS | 45.0% | |
AGAGGAGAGTAGACACTGAA+TGG | + | chr3.1:68362653-68362672 | MS.gene78984:CDS | 45.0% | |
CGATAAATTGTTTAGGGGCG+TGG | - | chr3.1:68363156-68363175 | None:intergenic | 45.0% | |
GATTCTCCTTTCCATACTCC+TGG | - | chr3.1:68363744-68363763 | None:intergenic | 45.0% | |
GGATTGTCTCGCAGAAGAAA+AGG | - | chr3.1:68363135-68363154 | None:intergenic | 45.0% | |
TCGGAGAGAATCCATTTCCA+TGG | - | chr3.1:68363099-68363118 | None:intergenic | 45.0% | |
TTGTGGACGAGTTCATCAAG+AGG | + | chr3.1:68362635-68362654 | MS.gene78984:CDS | 45.0% | |
! | TCTTTTTGCCTGGTGAGACT+TGG | - | chr3.1:68362366-68362385 | None:intergenic | 45.0% |
ACGGTCACGTGATTAACGTG+AGG | - | chr3.1:68363055-68363074 | None:intergenic | 50.0% | |
CGCTGCATGACCACTGTTAT+AGG | - | chr3.1:68363682-68363701 | None:intergenic | 50.0% | |
TGCGACGACATGAGAAGTTC+AGG | - | chr3.1:68363520-68363539 | None:intergenic | 50.0% | |
! | ATACGGCCAGGAGTATGGAA+AGG | + | chr3.1:68363735-68363754 | MS.gene78984:CDS | 50.0% |
! | TTTTGCCTGGTGAGACTTGG+AGG | - | chr3.1:68362363-68362382 | None:intergenic | 50.0% |
ATGGTGCCTGCCTCAGAAGA+GGG | + | chr3.1:68362331-68362350 | MS.gene78984:CDS | 55.0% | |
GCTGAATACGGCCAGGAGTA+TGG | + | chr3.1:68363730-68363749 | MS.gene78984:CDS | 55.0% | |
TATGGTGCCTGCCTCAGAAG+AGG | + | chr3.1:68362330-68362349 | MS.gene78984:CDS | 55.0% | |
ACCCACCTCCAAGTCTCACC+AGG | + | chr3.1:68362355-68362374 | MS.gene78984:CDS | 60.0% | |
GCCTGGTGAGACTTGGAGGT+GGG | - | chr3.1:68362359-68362378 | None:intergenic | 60.0% | |
TGCCTGGTGAGACTTGGAGG+TGG | - | chr3.1:68362360-68362379 | None:intergenic | 60.0% | |
TGGTGCCTGCCTCAGAAGAG+GGG | + | chr3.1:68362332-68362351 | MS.gene78984:CDS | 60.0% | |
GAGGTGGGTCCCCTCTTCTG+AGG | - | chr3.1:68362344-68362363 | None:intergenic | 65.0% | |
!! | TGGGTCCCCTCTTCTGAGGC+AGG | - | chr3.1:68362340-68362359 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 68362186 | 68363822 | 68362186 | ID=MS.gene78984 |
chr3.1 | mRNA | 68362186 | 68363822 | 68362186 | ID=MS.gene78984.t1;Parent=MS.gene78984 |
chr3.1 | exon | 68362186 | 68362195 | 68362186 | ID=MS.gene78984.t1.exon1;Parent=MS.gene78984.t1 |
chr3.1 | CDS | 68362186 | 68362195 | 68362186 | ID=cds.MS.gene78984.t1;Parent=MS.gene78984.t1 |
chr3.1 | exon | 68362289 | 68362410 | 68362289 | ID=MS.gene78984.t1.exon2;Parent=MS.gene78984.t1 |
chr3.1 | CDS | 68362289 | 68362410 | 68362289 | ID=cds.MS.gene78984.t1;Parent=MS.gene78984.t1 |
chr3.1 | exon | 68362634 | 68362674 | 68362634 | ID=MS.gene78984.t1.exon3;Parent=MS.gene78984.t1 |
chr3.1 | CDS | 68362634 | 68362674 | 68362634 | ID=cds.MS.gene78984.t1;Parent=MS.gene78984.t1 |
chr3.1 | exon | 68363450 | 68363548 | 68363450 | ID=MS.gene78984.t1.exon4;Parent=MS.gene78984.t1 |
chr3.1 | CDS | 68363450 | 68363548 | 68363450 | ID=cds.MS.gene78984.t1;Parent=MS.gene78984.t1 |
chr3.1 | exon | 68363675 | 68363822 | 68363675 | ID=MS.gene78984.t1.exon5;Parent=MS.gene78984.t1 |
chr3.1 | CDS | 68363675 | 68363822 | 68363675 | ID=cds.MS.gene78984.t1;Parent=MS.gene78984.t1 |
Gene Sequence |
Protein sequence |