Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78996.t1 | XP_003613413.2 | 82.7 | 1053 | 180 | 2 | 1 | 1052 | 1 | 1052 | 0.00E+00 | 1656.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78996.t1 | Q9LFS8 | 55.8 | 1047 | 463 | 0 | 5 | 1051 | 4 | 1050 | 0.0e+00 | 1097.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78996.t1 | G7K5K8 | 82.7 | 1053 | 180 | 2 | 1 | 1052 | 1 | 1052 | 0.0e+00 | 1656.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene035825 | MS.gene78996 | PPI |
| MS.gene73093 | MS.gene78996 | PPI |
| MS.gene035826 | MS.gene78996 | PPI |
| MS.gene064351 | MS.gene78996 | PPI |
| MS.gene035828 | MS.gene78996 | PPI |
| MS.gene99872 | MS.gene78996 | PPI |
| MS.gene043643 | MS.gene78996 | PPI |
| MS.gene043595 | MS.gene78996 | PPI |
| MS.gene043645 | MS.gene78996 | PPI |
| MS.gene043593 | MS.gene78996 | PPI |
| MS.gene064353 | MS.gene78996 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78996.t1 | MTR_5g036370 | 92.118 | 1053 | 81 | 2 | 1 | 1052 | 1 | 1052 | 0.0 | 1982 |
| MS.gene78996.t1 | MTR_3g033470 | 80.703 | 1052 | 203 | 0 | 1 | 1052 | 1 | 1052 | 0.0 | 1709 |
| MS.gene78996.t1 | MTR_4g115050 | 81.172 | 1041 | 196 | 0 | 12 | 1052 | 1 | 1041 | 0.0 | 1706 |
| MS.gene78996.t1 | MTR_5g036330 | 92.531 | 241 | 18 | 0 | 812 | 1052 | 1 | 241 | 8.31e-161 | 474 |
| MS.gene78996.t1 | MTR_5g036300 | 72.581 | 124 | 20 | 2 | 912 | 1032 | 2 | 114 | 3.08e-49 | 170 |
| MS.gene78996.t1 | MTR_4g036760 | 21.903 | 557 | 329 | 21 | 21 | 511 | 22 | 538 | 4.29e-12 | 71.2 |
| MS.gene78996.t1 | MTR_4g061050 | 23.469 | 392 | 237 | 12 | 21 | 362 | 21 | 399 | 5.40e-12 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78996.t1 | AT5G15920 | 58.930 | 1047 | 430 | 0 | 5 | 1051 | 4 | 1050 | 0.0 | 1224 |
Find 198 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTGGGAATTTCTAGTTTA+TGG | 0.067075 | 5.2:-26637260 | MS.gene78996:CDS |
| AACATCTTCCTTTCATTTAT+TGG | 0.110482 | 5.2:+26629438 | None:intergenic |
| ATCTCATCAACAACTCTAAA+TGG | 0.179796 | 5.2:+26629559 | None:intergenic |
| GAATTCAACAAGGAGGTTTA+TGG | 0.219115 | 5.2:-26638671 | MS.gene78996:CDS |
| CCTTAACTTTAATTGCATTA+TGG | 0.223056 | 5.2:+26636447 | None:intergenic |
| TTACTTGCATTGCAAAATTC+TGG | 0.224907 | 5.2:-26638743 | MS.gene78996:CDS |
| CTCCTTAGCTTCACGATATT+CGG | 0.257714 | 5.2:+26640692 | None:intergenic |
| ACATCTTCCTTTCATTTATT+GGG | 0.259944 | 5.2:+26629439 | None:intergenic |
| ATGTATACCTCGACTAAAAC+TGG | 0.260752 | 5.2:+26638647 | None:intergenic |
| AGGAAATATTGTGTCCAAAA+AGG | 0.267057 | 5.2:-26642189 | MS.gene78996:CDS |
| GTTAACTCCCGTGCAACTTC+TGG | 0.268408 | 5.2:-26641277 | MS.gene78996:CDS |
| AGTACTCACTGTGGTGTATT+TGG | 0.268532 | 5.2:+26629387 | None:intergenic |
| CCTCGGTTGAATCTTGTAAT+TGG | 0.281754 | 5.2:-26642753 | MS.gene78996:CDS |
| GAGCAGGATGATTTAGATAC+TGG | 0.281971 | 5.2:-26636518 | MS.gene78996:CDS |
| AAACTAGAAATTCCCAAGTT+TGG | 0.284443 | 5.2:+26637264 | None:intergenic |
| TAATAATTTGTTAGCCTTCT+CGG | 0.291677 | 5.2:+26640644 | None:intergenic |
| CAGCCATCTGTTGAAAATTT+CGG | 0.301928 | 5.2:+26630884 | None:intergenic |
| GTAATTGGTCCCAATGGTTC+TGG | 0.325831 | 5.2:-26642738 | MS.gene78996:CDS |
| CTTGAGTCAAATTATTTACT+TGG | 0.327965 | 5.2:+26642135 | None:intergenic |
| TAGCTTGAAATGTTGTATCT+TGG | 0.328591 | 5.2:+26631984 | None:intergenic |
| CCTGTCTTTGCAATTCTTCA+AGG | 0.332234 | 5.2:+26638886 | None:intergenic |
| CTTGTATGTGCTATTGCTCT+TGG | 0.333455 | 5.2:-26642705 | MS.gene78996:CDS |
| GATATGAACTATGATCAATT+TGG | 0.339387 | 5.2:-26630751 | MS.gene78996:CDS |
| TACAAAATGTCAAGATGAAT+TGG | 0.343354 | 5.2:-26631794 | MS.gene78996:CDS |
| TTTCAACAGATGGCTGTTGC+TGG | 0.358447 | 5.2:-26630877 | MS.gene78996:CDS |
| AGATGAATTGGAAACTATTA+AGG | 0.359279 | 5.2:-26631782 | MS.gene78996:intron |
| CACCAGAAAATCACTATTAC+TGG | 0.367078 | 5.2:-26637236 | MS.gene78996:CDS |
| ATAAACGAGAAGCAATAATT+AGG | 0.367459 | 5.2:-26636680 | MS.gene78996:CDS |
| TGGCCTGTGCGGCGAGCCTC+AGG | 0.370803 | 5.2:-26642685 | MS.gene78996:intron |
| GAAATTTCTGCTAATGAAGT+TGG | 0.372849 | 5.2:-26638956 | MS.gene78996:CDS |
| AGCCGTTGAGGTTCCAAACT+TGG | 0.377273 | 5.2:-26637277 | MS.gene78996:CDS |
| TCTAGCTCTATAATGTTTCC+AGG | 0.386752 | 5.2:+26642822 | None:intergenic |
| CCATAATGCAATTAAAGTTA+AGG | 0.386870 | 5.2:-26636447 | MS.gene78996:intron |
| TACTTGCATTGCAAAATTCT+GGG | 0.388965 | 5.2:-26638742 | MS.gene78996:CDS |
| TTTCAGAAGGCTCTCTTTGT+TGG | 0.391226 | 5.2:+26637666 | None:intergenic |
| TTCAAGAACAAATTGCTTCC+CGG | 0.391298 | 5.2:-26636989 | MS.gene78996:CDS |
| TACTTATAAAAGTCAAATTC+AGG | 0.393258 | 5.2:-26630726 | MS.gene78996:intron |
| ATACTATTCACTAGAAGTTT+CGG | 0.395851 | 5.2:+26637159 | None:intergenic |
| GTTAGCGAAGCTTGCTGATC+AGG | 0.405651 | 5.2:-26636495 | MS.gene78996:CDS |
| TACTGGTCGAAGTCTAGATA+TGG | 0.407251 | 5.2:-26637219 | MS.gene78996:CDS |
| GCCTCACTATATTGCAGATC+TGG | 0.407453 | 5.2:+26629202 | None:intergenic |
| CCGAATGATCAAGTTTAGAT+TGG | 0.407807 | 5.2:+26637477 | None:intergenic |
| CCAATCTAAACTTGATCATT+CGG | 0.408806 | 5.2:-26637477 | MS.gene78996:intron |
| CGACCAGTATAATTTAAAAC+TGG | 0.411645 | 5.2:+26637695 | None:intergenic |
| CCACATTAAGATTACCATAA+GGG | 0.413505 | 5.2:-26642517 | MS.gene78996:CDS |
| TGCAGATCTGGTAACAGCTT+TGG | 0.415021 | 5.2:+26629214 | None:intergenic |
| GTCAAGTTGCTTGGTACACT+TGG | 0.416024 | 5.2:-26638503 | MS.gene78996:CDS |
| CAACCTGAGGCTCGCCGCAC+AGG | 0.416219 | 5.2:+26642682 | None:intergenic |
| TATGAGAAATTACCCTTTGA+GGG | 0.418707 | 5.2:+26629136 | None:intergenic |
| AAATTTGGTCCAAACGGAAA+TGG | 0.420361 | 5.2:+26637537 | None:intergenic |
| TCATCCGTGGGAGGTACATA+AGG | 0.425803 | 5.2:+26639787 | None:intergenic |
| TTGTAAAATTTGCAGGTTGA+AGG | 0.428383 | 5.2:-26638792 | MS.gene78996:intron |
| GATGGACGAGCTGCGACAGC+AGG | 0.428443 | 5.2:-26639887 | MS.gene78996:CDS |
| CTCAGTGCCCATCATCAATC+TGG | 0.429551 | 5.2:-26629727 | MS.gene78996:CDS |
| GTGAAGGAGGGAGAAGAGTC+TGG | 0.430412 | 5.2:-26642540 | MS.gene78996:CDS |
| TATTTAGCATGAGACTGATC+TGG | 0.433236 | 5.2:+26638534 | None:intergenic |
| TTACCTTTGCAGCAAATTCA+AGG | 0.435181 | 5.2:+26636065 | None:intergenic |
| AACACCTCCTTGACAGCATC+AGG | 0.438128 | 5.2:+26637506 | None:intergenic |
| TCACATATTGCAACAATATG+AGG | 0.445148 | 5.2:-26631939 | MS.gene78996:CDS |
| GAAGCAATAATTAGGCGTAT+TGG | 0.445971 | 5.2:-26636672 | MS.gene78996:intron |
| GTATGAGAAATTACCCTTTG+AGG | 0.445975 | 5.2:+26629135 | None:intergenic |
| GAGAGATAAAGTTGTGGAGT+TGG | 0.449070 | 5.2:-26638978 | MS.gene78996:CDS |
| CAATAAGAAAAGCAGACTAT+TGG | 0.452805 | 5.2:-26640049 | MS.gene78996:CDS |
| TTCTGTAGGTCAGGTGTAAG+AGG | 0.453874 | 5.2:+26633168 | None:intergenic |
| CTTGTTGAAGATGCGTGTTA+CGG | 0.456156 | 5.2:-26636118 | MS.gene78996:CDS |
| GCCACAAGATTTCTGAGAGT+TGG | 0.461741 | 5.2:+26630928 | None:intergenic |
| TGATGCTCCTGATGCTGTCA+AGG | 0.462891 | 5.2:-26637513 | MS.gene78996:CDS |
| CGGACGAAGTTATGTTGTAC+AGG | 0.464754 | 5.2:-26636098 | MS.gene78996:CDS |
| GCCTACTACAATTGAGGAGT+TGG | 0.468182 | 5.2:-26632017 | MS.gene78996:CDS |
| TTCAATTCAGTTTATTGGAT+CGG | 0.472681 | 5.2:-26637316 | MS.gene78996:intron |
| TATTGGCATTCTCATTTAGT+CGG | 0.474146 | 5.2:+26640067 | None:intergenic |
| TCTTGGTATCCATTTCCGTT+TGG | 0.476435 | 5.2:-26637546 | MS.gene78996:CDS |
| AGAAATTCCTTCTGTAGGTC+AGG | 0.478076 | 5.2:+26633159 | None:intergenic |
| GAAAGTGATACTGAAATCAA+TGG | 0.478911 | 5.2:-26636543 | MS.gene78996:CDS |
| GGGGAGGATGATTATATGCC+TGG | 0.481452 | 5.2:-26642840 | MS.gene78996:CDS |
| ACTGAAATCAATGGAAGAGC+AGG | 0.484741 | 5.2:-26636534 | MS.gene78996:CDS |
| TAAAGTGCTCTGATGTTTGA+CGG | 0.485770 | 5.2:+26633344 | None:intergenic |
| AAGATGAGGAGAAAAGCTTA+AGG | 0.485886 | 5.2:-26636944 | MS.gene78996:CDS |
| CCCGGGAGGAAAGTATCATA+TGG | 0.486274 | 5.2:-26636971 | MS.gene78996:CDS |
| TAATCTGAGCTTCAAAGAAA+AGG | 0.488523 | 5.2:-26637015 | MS.gene78996:CDS |
| TCAAGAACAAATTGCTTCCC+GGG | 0.489449 | 5.2:-26636988 | MS.gene78996:CDS |
| AGGAACTTTAAATCAGTTGA+AGG | 0.489970 | 5.2:-26641065 | MS.gene78996:CDS |
| TGCGACAGCAGGAAGAAAAT+CGG | 0.490404 | 5.2:-26639876 | MS.gene78996:CDS |
| TTTGAGGGCTGCTCAATCCA+AGG | 0.490898 | 5.2:+26629151 | None:intergenic |
| AGAACTCTTTCCAGAACCAT+TGG | 0.490951 | 5.2:+26642728 | None:intergenic |
| GCCGTTGAGGTTCCAAACTT+GGG | 0.494349 | 5.2:-26637276 | MS.gene78996:CDS |
| CCTTGAAGAATTGCAAAGAC+AGG | 0.494479 | 5.2:-26638886 | MS.gene78996:intron |
| TTGGATGTTAAACCTCTGAA+TGG | 0.494697 | 5.2:+26642154 | None:intergenic |
| TCTCATCAACAACTCTAAAT+GGG | 0.495363 | 5.2:+26629560 | None:intergenic |
| GCCACATTAAGATTACCATA+AGG | 0.497474 | 5.2:-26642518 | MS.gene78996:CDS |
| ATCTAGAGGGTCAAGTTGCT+TGG | 0.497651 | 5.2:-26638512 | MS.gene78996:CDS |
| ACCATATGATACTTTCCTCC+CGG | 0.499017 | 5.2:+26636970 | None:intergenic |
| TTTCCTTGAATTTGCTGCAA+AGG | 0.501461 | 5.2:-26636068 | MS.gene78996:intron |
| CCTGGGCTAGTGGTGATCAA+TGG | 0.502435 | 5.2:-26629041 | MS.gene78996:CDS |
| TACTAAAGATTTAAATGTGA+GGG | 0.503403 | 5.2:-26637045 | MS.gene78996:intron |
| TCTTACCAGATGCGAGCTCT+TGG | 0.503536 | 5.2:-26637563 | MS.gene78996:intron |
| GGCAGTTTGTAAGATCTTGA+AGG | 0.506438 | 5.2:+26629581 | None:intergenic |
| CCAAGCGCCCTAAAATTACA+AGG | 0.507582 | 5.2:-26643956 | MS.gene78996:intron |
| TGGATTGAGCAGCCCTCAAA+GGG | 0.510730 | 5.2:-26629148 | MS.gene78996:intron |
| AAGTTATGTTGTACAGGGAA+TGG | 0.514733 | 5.2:-26636092 | MS.gene78996:CDS |
| TCCAACTCCTCAATTGTAGT+AGG | 0.515741 | 5.2:+26632016 | None:intergenic |
| GGTCTCTTCCAGAAGTTGCA+CGG | 0.517180 | 5.2:+26641269 | None:intergenic |
| AATCTTGTAATTGGTCCCAA+TGG | 0.520331 | 5.2:-26642744 | MS.gene78996:CDS |
| AAGTTCTTCTGCAGGAAAAG+TGG | 0.520746 | 5.2:-26630954 | MS.gene78996:intron |
| TGAATTCATGACGATGCGCT+TGG | 0.524274 | 5.2:+26638687 | None:intergenic |
| CATCCGTGGGAGGTACATAA+GGG | 0.526641 | 5.2:+26639788 | None:intergenic |
| GTACCCCTCCAGATTGATGA+TGG | 0.527426 | 5.2:+26629719 | None:intergenic |
| ATTAGTGCACGATGTTGCTC+AGG | 0.529223 | 5.2:+26641219 | None:intergenic |
| GTCTCTTCCAGAAGTTGCAC+GGG | 0.533502 | 5.2:+26641270 | None:intergenic |
| GAACTCTTTCCAGAACCATT+GGG | 0.536149 | 5.2:+26642729 | None:intergenic |
| TTAGGGCGCTTGGGTGGACG+AGG | 0.537742 | 5.2:+26643966 | None:intergenic |
| ACAAGATTCAACCGAGGACC+AGG | 0.537844 | 5.2:+26642759 | None:intergenic |
| GCGTGAGAAGACTGCTGCAA+TGG | 0.540164 | 5.2:-26640670 | MS.gene78996:CDS |
| AAAGTGCTCTGATGTTTGAC+GGG | 0.540768 | 5.2:+26633345 | None:intergenic |
| AGCAGGATGATTTAGATACT+GGG | 0.542003 | 5.2:-26636517 | MS.gene78996:CDS |
| GATCAATGGAGTATTATCAC+TGG | 0.544029 | 5.2:-26629027 | MS.gene78996:CDS |
| ATTTAGCATGAGACTGATCT+GGG | 0.545071 | 5.2:+26638535 | None:intergenic |
| CACAAAATTTGCAACACGCG+TGG | 0.546859 | 5.2:+26642560 | None:intergenic |
| CTATAGGAAGTGGAATTACA+AGG | 0.547158 | 5.2:-26639922 | MS.gene78996:intron |
| CACATTAAGATTACCATAAG+GGG | 0.548656 | 5.2:-26642516 | MS.gene78996:CDS |
| TTGGATTGAGCAGCCCTCAA+AGG | 0.549843 | 5.2:-26629149 | MS.gene78996:CDS |
| TGTAAACCAGCCTGGGCTAG+TGG | 0.551216 | 5.2:-26629051 | MS.gene78996:intron |
| GTTTACGAAGATTAGCAGCC+TGG | 0.552178 | 5.2:+26636919 | None:intergenic |
| TCTGTAGGTCAGGTGTAAGA+GGG | 0.552413 | 5.2:+26633169 | None:intergenic |
| TCCAACTCTCAGAAATCTTG+TGG | 0.553001 | 5.2:-26630929 | MS.gene78996:CDS |
| GTAGATGCCTACTACAATTG+AGG | 0.553461 | 5.2:-26632023 | MS.gene78996:intron |
| ATTGGAGAAAGAGAGCCAAT+TGG | 0.554157 | 5.2:-26640031 | MS.gene78996:intron |
| TGAATGTAATGAATGGCCCT+TGG | 0.555314 | 5.2:-26629168 | MS.gene78996:CDS |
| AGTATTATCACTGGACATGT+TGG | 0.556987 | 5.2:-26629018 | MS.gene78996:CDS |
| GGCCGAATATCGTGAAGCTA+AGG | 0.561976 | 5.2:-26640694 | MS.gene78996:CDS |
| TCCCAAGTTTGGAACCTCAA+CGG | 0.562662 | 5.2:+26637275 | None:intergenic |
| AAGACTGAGAGATAAAGTTG+TGG | 0.562781 | 5.2:-26638984 | MS.gene78996:CDS |
| AAAACTTGACGCAGACATGA+AGG | 0.566349 | 5.2:-26631821 | MS.gene78996:CDS |
| ACAAGGAAATTACAAAGAGA+TGG | 0.566474 | 5.2:-26639905 | MS.gene78996:CDS |
| GATTACCTAAAATGTAAACC+TGG | 0.566857 | 5.2:-26642777 | MS.gene78996:CDS |
| GTTGAAGTATGATATGAAGC+AGG | 0.567566 | 5.2:-26640715 | MS.gene78996:CDS |
| CCTACAGAAGGAATTTCTTG+AGG | 0.569225 | 5.2:-26633154 | MS.gene78996:intron |
| CCATATGATACTTTCCTCCC+GGG | 0.573152 | 5.2:+26636971 | None:intergenic |
| TCTTTAGATTGGAGATATGG+AGG | 0.574183 | 5.2:-26633395 | MS.gene78996:intron |
| TATCATATGGTTTCAAGATG+AGG | 0.574867 | 5.2:-26636958 | MS.gene78996:CDS |
| TAAAATGTAAACCTGGTCCT+CGG | 0.575663 | 5.2:-26642770 | MS.gene78996:CDS |
| GAAAGGTCAGCATACTCGAT+AGG | 0.575946 | 5.2:+26640606 | None:intergenic |
| ACTTCTGGAAGAGACCGAAA+AGG | 0.576075 | 5.2:-26641262 | MS.gene78996:CDS |
| ACTTCAGGAGAAATTTCAGA+AGG | 0.576911 | 5.2:+26637653 | None:intergenic |
| AGCAGAAACTTAGAAAAGCT+AGG | 0.578280 | 5.2:-26639852 | MS.gene78996:CDS |
| TTGAGGGCTGCTCAATCCAA+GGG | 0.578825 | 5.2:+26629152 | None:intergenic |
| TTCATATCATACTTCAACCA+TGG | 0.579377 | 5.2:+26640720 | None:intergenic |
| AGATTTAAATGTGAGGGACA+TGG | 0.579406 | 5.2:-26637039 | MS.gene78996:CDS |
| CCTCAAGAAATTCCTTCTGT+AGG | 0.579781 | 5.2:+26633154 | None:intergenic |
| TGCTAATCTTCGTAAACAGA+AGG | 0.579946 | 5.2:-26636913 | MS.gene78996:intron |
| ATATGAGGATCGTCAAAGAC+AGG | 0.583532 | 5.2:-26631924 | MS.gene78996:intron |
| TACACTTACAATCTCATCCG+TGG | 0.584228 | 5.2:+26639774 | None:intergenic |
| CCATTGATCACCACTAGCCC+AGG | 0.584688 | 5.2:+26629041 | None:intergenic |
| GCAGTTTGTAAGATCTTGAA+GGG | 0.585493 | 5.2:+26629582 | None:intergenic |
| GGATGGACCCAATAAATGAA+AGG | 0.587763 | 5.2:-26629446 | MS.gene78996:CDS |
| GTCTCATGCTAAATATCTAG+AGG | 0.591424 | 5.2:-26638526 | MS.gene78996:CDS |
| ACTTGCATTGCAAAATTCTG+GGG | 0.592878 | 5.2:-26638741 | MS.gene78996:CDS |
| AAGAGATGAACTTCGTGCCA+AGG | 0.592884 | 5.2:-26640999 | MS.gene78996:intron |
| GCAGAAACTTAGAAAAGCTA+GGG | 0.593127 | 5.2:-26639851 | MS.gene78996:CDS |
| ACATAATACTGAATTAGAGA+TGG | 0.594060 | 5.2:-26641041 | MS.gene78996:CDS |
| AGTTGCTTGGTACACTTGGA+AGG | 0.595673 | 5.2:-26638499 | MS.gene78996:intron |
| CCCTTATGGTAATCTTAATG+TGG | 0.596841 | 5.2:+26642517 | None:intergenic |
| GGAGAAAAGCTTAAGGAACC+AGG | 0.597038 | 5.2:-26636937 | MS.gene78996:CDS |
| GAAGAGACCGAAAAGGCTGT+TGG | 0.597377 | 5.2:-26641255 | MS.gene78996:CDS |
| AACTGATCAGAAAGCCGTTG+AGG | 0.599760 | 5.2:-26637289 | MS.gene78996:CDS |
| CTGGCACATCATAATGTCGT+AGG | 0.602967 | 5.2:+26637714 | None:intergenic |
| TAATGGAAAAGAAATTGCCA+TGG | 0.607534 | 5.2:-26640737 | MS.gene78996:CDS |
| AGTGCCCATCATCAATCTGG+AGG | 0.608837 | 5.2:-26629724 | MS.gene78996:CDS |
| GTTGCTGGAGAAGTTTCACT+AGG | 0.610416 | 5.2:-26630862 | MS.gene78996:intron |
| GTGCCCATCATCAATCTGGA+GGG | 0.610882 | 5.2:-26629723 | MS.gene78996:CDS |
| GGACGAAGTTATGTTGTACA+GGG | 0.613180 | 5.2:-26636097 | MS.gene78996:CDS |
| TCATATTGTTGCAATATGTG+AGG | 0.613373 | 5.2:+26631941 | None:intergenic |
| AGTATATTGAATGTAATGAA+TGG | 0.615421 | 5.2:-26629175 | MS.gene78996:CDS |
| TGCTGCAATGGAATCCGAGA+AGG | 0.616831 | 5.2:-26640658 | MS.gene78996:CDS |
| CGATGTTGCTCAGGAAGCTG+TGG | 0.617771 | 5.2:+26641228 | None:intergenic |
| AAACCCTTATGTACCTCCCA+CGG | 0.624268 | 5.2:-26639791 | MS.gene78996:CDS |
| AACTCACAGACCCTGTCTTG+CGG | 0.625196 | 5.2:+26641306 | None:intergenic |
| GTACTAAAGATTTAAATGTG+AGG | 0.626016 | 5.2:-26637046 | MS.gene78996:intron |
| TGTATACCTCGACTAAAACT+GGG | 0.631176 | 5.2:+26638648 | None:intergenic |
| TGCCCATCATCAATCTGGAG+GGG | 0.633194 | 5.2:-26629722 | MS.gene78996:intron |
| ACCAGATCTGCAATATAGTG+AGG | 0.635581 | 5.2:-26629203 | MS.gene78996:CDS |
| TACCCCTCCAGATTGATGAT+GGG | 0.641014 | 5.2:+26629720 | None:intergenic |
| ATATCAGCAGCAAGTCCGAA+TGG | 0.641621 | 5.2:-26642452 | MS.gene78996:CDS |
| TCTTACACCTGACCTACAGA+AGG | 0.643706 | 5.2:-26633166 | MS.gene78996:CDS |
| ACACTTACAATCTCATCCGT+GGG | 0.645301 | 5.2:+26639775 | None:intergenic |
| TGCTCCTGATGCTGTCAAGG+AGG | 0.648261 | 5.2:-26637510 | MS.gene78996:CDS |
| GTTGTTGATGAGATCAACCA+AGG | 0.650633 | 5.2:-26629550 | MS.gene78996:intron |
| ATGTGGCTGAAACCATTCAG+AGG | 0.657774 | 5.2:-26642166 | MS.gene78996:CDS |
| ACATTAAGATTACCATAAGG+GGG | 0.660320 | 5.2:-26642515 | MS.gene78996:CDS |
| TCTCATGCTAAATATCTAGA+GGG | 0.663581 | 5.2:-26638525 | MS.gene78996:CDS |
| CTGTAGGTCAGGTGTAAGAG+GGG | 0.666378 | 5.2:+26633170 | None:intergenic |
| AGAACAAATTGCTTCCCGGG+AGG | 0.691838 | 5.2:-26636985 | MS.gene78996:CDS |
| CATTAAGATTACCATAAGGG+GGG | 0.696374 | 5.2:-26642514 | MS.gene78996:CDS |
| CTTACAATCTCATCCGTGGG+AGG | 0.700808 | 5.2:+26639778 | None:intergenic |
| TCGTCATGAATTCAACAAGG+AGG | 0.707524 | 5.2:-26638678 | MS.gene78996:CDS |
| GCATCGTCATGAATTCAACA+AGG | 0.720677 | 5.2:-26638681 | MS.gene78996:CDS |
| GCTATTGCTCTTGGCCTGTG+CGG | 0.725524 | 5.2:-26642696 | MS.gene78996:CDS |
| CCAATTACAAGATTCAACCG+AGG | 0.759991 | 5.2:+26642753 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 26629002 | 26643997 | 26629002 | ID=MS.gene78996 |
| chr5.2 | mRNA | 26629002 | 26643997 | 26629002 | ID=MS.gene78996.t1;Parent=MS.gene78996 |
| chr5.2 | exon | 26643957 | 26643997 | 26643957 | ID=MS.gene78996.t1.exon1;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26643957 | 26643997 | 26643957 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26642686 | 26642863 | 26642686 | ID=MS.gene78996.t1.exon2;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26642686 | 26642863 | 26642686 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26642442 | 26642595 | 26642442 | ID=MS.gene78996.t1.exon3;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26642442 | 26642595 | 26642442 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26642136 | 26642209 | 26642136 | ID=MS.gene78996.t1.exon4;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26642136 | 26642209 | 26642136 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26641185 | 26641334 | 26641185 | ID=MS.gene78996.t1.exon5;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26641185 | 26641334 | 26641185 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26641000 | 26641104 | 26641000 | ID=MS.gene78996.t1.exon6;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26641000 | 26641104 | 26641000 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26640621 | 26640766 | 26640621 | ID=MS.gene78996.t1.exon7;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26640621 | 26640766 | 26640621 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26640032 | 26640143 | 26640032 | ID=MS.gene78996.t1.exon8;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26640032 | 26640143 | 26640032 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26639783 | 26639938 | 26639783 | ID=MS.gene78996.t1.exon9;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26639783 | 26639938 | 26639783 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26638887 | 26639008 | 26638887 | ID=MS.gene78996.t1.exon10;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26638887 | 26639008 | 26638887 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26638655 | 26638799 | 26638655 | ID=MS.gene78996.t1.exon11;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26638655 | 26638799 | 26638655 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26638500 | 26638565 | 26638500 | ID=MS.gene78996.t1.exon12;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26638500 | 26638565 | 26638500 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26637655 | 26637783 | 26637655 | ID=MS.gene78996.t1.exon13;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26637655 | 26637783 | 26637655 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26637478 | 26637576 | 26637478 | ID=MS.gene78996.t1.exon14;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26637478 | 26637576 | 26637478 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26637163 | 26637328 | 26637163 | ID=MS.gene78996.t1.exon15;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26637163 | 26637328 | 26637163 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26636914 | 26637059 | 26636914 | ID=MS.gene78996.t1.exon16;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26636914 | 26637059 | 26636914 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26636673 | 26636736 | 26636673 | ID=MS.gene78996.t1.exon17;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26636673 | 26636736 | 26636673 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26636448 | 26636572 | 26636448 | ID=MS.gene78996.t1.exon18;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26636448 | 26636572 | 26636448 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26636069 | 26636146 | 26636069 | ID=MS.gene78996.t1.exon19;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26636069 | 26636146 | 26636069 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26633338 | 26633410 | 26633338 | ID=MS.gene78996.t1.exon20;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26633338 | 26633410 | 26633338 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26633155 | 26633258 | 26633155 | ID=MS.gene78996.t1.exon21;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26633155 | 26633258 | 26633155 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26631925 | 26632041 | 26631925 | ID=MS.gene78996.t1.exon22;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26631925 | 26632041 | 26631925 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26631783 | 26631860 | 26631783 | ID=MS.gene78996.t1.exon23;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26631783 | 26631860 | 26631783 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26630863 | 26630962 | 26630863 | ID=MS.gene78996.t1.exon24;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26630863 | 26630962 | 26630863 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26630727 | 26630781 | 26630727 | ID=MS.gene78996.t1.exon25;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26630727 | 26630781 | 26630727 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26629723 | 26629771 | 26629723 | ID=MS.gene78996.t1.exon26;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26629723 | 26629771 | 26629723 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26629551 | 26629638 | 26629551 | ID=MS.gene78996.t1.exon27;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26629551 | 26629638 | 26629551 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26629396 | 26629468 | 26629396 | ID=MS.gene78996.t1.exon28;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26629396 | 26629468 | 26629396 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26629149 | 26629252 | 26629149 | ID=MS.gene78996.t1.exon29;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26629149 | 26629252 | 26629149 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| chr5.2 | exon | 26629002 | 26629063 | 26629002 | ID=MS.gene78996.t1.exon30;Parent=MS.gene78996.t1 |
| chr5.2 | CDS | 26629002 | 26629063 | 26629002 | ID=cds.MS.gene78996.t1;Parent=MS.gene78996.t1 |
| Gene Sequence |
| Protein sequence |
