Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79603.t1 | XP_004297526.1 | 60.5 | 162 | 41 | 3 | 7 | 168 | 99 | 237 | 8.40E-24 | 120.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79603.t1 | Q9C5D3 | 57.0 | 158 | 46 | 3 | 7 | 164 | 101 | 236 | 7.0e-19 | 95.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79603.t1 | A0A371E9D2 | 62.0 | 158 | 36 | 3 | 7 | 164 | 75 | 208 | 7.9e-24 | 120.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene79603 | 0.808263 | 3.37E-50 | -1.69E-46 |
| MS.gene051181 | MS.gene79603 | 0.837395 | 5.33E-57 | -1.69E-46 |
| MS.gene051710 | MS.gene79603 | 0.81149 | 6.82E-51 | -1.69E-46 |
| MS.gene052447 | MS.gene79603 | 0.812441 | 4.23E-51 | -1.69E-46 |
| MS.gene05329 | MS.gene79603 | 0.811947 | 5.43E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene79603 | 0.820887 | 5.41E-53 | -1.69E-46 |
| MS.gene05435 | MS.gene79603 | 0.810148 | 1.33E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene79603 | 0.805014 | 1.64E-49 | -1.69E-46 |
| MS.gene056162 | MS.gene79603 | 0.801514 | 8.69E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene79603 | 0.824881 | 6.35E-54 | -1.69E-46 |
| MS.gene058515 | MS.gene79603 | 0.829754 | 4.31E-55 | -1.69E-46 |
| MS.gene058979 | MS.gene79603 | 0.824847 | 6.46E-54 | -1.69E-46 |
| MS.gene059584 | MS.gene79603 | 0.818834 | 1.59E-52 | -1.69E-46 |
| MS.gene060011 | MS.gene79603 | 0.806207 | 9.20E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79603.t1 | MTR_8g096700 | 91.000 | 100 | 9 | 0 | 7 | 106 | 79 | 178 | 1.59e-41 | 142 |
| MS.gene79603.t1 | MTR_8g096700 | 58.586 | 99 | 22 | 1 | 81 | 179 | 53 | 132 | 1.65e-30 | 114 |
| MS.gene79603.t1 | MTR_3g099040 | 46.203 | 158 | 62 | 3 | 7 | 164 | 62 | 196 | 7.27e-29 | 109 |
| MS.gene79603.t1 | MTR_3g099040 | 51.136 | 88 | 24 | 1 | 81 | 168 | 36 | 104 | 3.10e-21 | 89.0 |
| MS.gene79603.t1 | MTR_3g099030 | 59.223 | 103 | 38 | 2 | 7 | 109 | 62 | 160 | 1.14e-28 | 108 |
| MS.gene79603.t1 | MTR_3g099030 | 50.000 | 100 | 30 | 2 | 81 | 180 | 36 | 115 | 1.15e-22 | 92.0 |
| MS.gene79603.t1 | MTR_4g006650 | 60.204 | 98 | 36 | 1 | 7 | 104 | 195 | 289 | 6.96e-27 | 104 |
| MS.gene79603.t1 | MTR_4g006650 | 50.000 | 88 | 25 | 1 | 81 | 168 | 169 | 237 | 8.96e-21 | 88.2 |
| MS.gene79603.t1 | MTR_2g026685 | 40.506 | 158 | 72 | 3 | 7 | 164 | 21 | 156 | 3.96e-19 | 82.0 |
| MS.gene79603.t1 | MTR_2g026685 | 40.000 | 160 | 74 | 3 | 5 | 164 | 59 | 196 | 8.88e-19 | 82.0 |
| MS.gene79603.t1 | MTR_2g026685 | 39.080 | 87 | 34 | 1 | 81 | 167 | 35 | 102 | 5.72e-13 | 65.9 |
| MS.gene79603.t1 | MTR_2g026685 | 40.000 | 160 | 74 | 3 | 5 | 164 | 60 | 197 | 9.01e-19 | 82.0 |
| MS.gene79603.t1 | MTR_2g026685 | 39.080 | 87 | 34 | 1 | 81 | 167 | 36 | 103 | 5.77e-13 | 65.9 |
| MS.gene79603.t1 | MTR_8g010540 | 34.266 | 143 | 65 | 6 | 23 | 165 | 72 | 185 | 4.59e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79603.t1 | AT5G50740 | 52.336 | 107 | 45 | 2 | 2 | 105 | 47 | 150 | 1.95e-27 | 102 |
| MS.gene79603.t1 | AT5G50740 | 45.299 | 117 | 30 | 2 | 69 | 170 | 2 | 99 | 3.11e-23 | 91.3 |
| MS.gene79603.t1 | AT5G50740 | 55.446 | 101 | 42 | 1 | 5 | 105 | 60 | 157 | 2.40e-27 | 102 |
| MS.gene79603.t1 | AT5G50740 | 51.111 | 90 | 25 | 1 | 81 | 170 | 36 | 106 | 1.21e-22 | 89.7 |
| MS.gene79603.t1 | AT5G63530 | 49.398 | 166 | 59 | 5 | 2 | 164 | 78 | 221 | 3.77e-25 | 100 |
| MS.gene79603.t1 | AT5G63530 | 52.778 | 108 | 31 | 2 | 81 | 188 | 60 | 147 | 6.76e-21 | 88.6 |
| MS.gene79603.t1 | AT5G63530 | 49.398 | 166 | 59 | 5 | 2 | 164 | 93 | 236 | 4.14e-25 | 100 |
| MS.gene79603.t1 | AT5G63530 | 52.778 | 108 | 31 | 2 | 81 | 188 | 75 | 162 | 7.24e-21 | 89.0 |
| MS.gene79603.t1 | AT5G50740 | 37.129 | 202 | 95 | 5 | 2 | 194 | 54 | 232 | 8.34e-24 | 95.9 |
| MS.gene79603.t1 | AT5G50740 | 51.111 | 90 | 25 | 1 | 81 | 170 | 36 | 106 | 3.61e-22 | 91.3 |
| MS.gene79603.t1 | AT5G50740 | 37.129 | 202 | 95 | 5 | 2 | 194 | 47 | 225 | 9.74e-24 | 95.5 |
| MS.gene79603.t1 | AT5G50740 | 45.299 | 117 | 30 | 2 | 69 | 170 | 2 | 99 | 1.22e-22 | 92.4 |
| MS.gene79603.t1 | AT5G50740 | 37.129 | 202 | 95 | 5 | 2 | 194 | 47 | 225 | 9.74e-24 | 95.5 |
| MS.gene79603.t1 | AT5G50740 | 45.299 | 117 | 30 | 2 | 69 | 170 | 2 | 99 | 1.22e-22 | 92.4 |
| MS.gene79603.t1 | AT3G02960 | 34.706 | 170 | 76 | 4 | 2 | 167 | 56 | 194 | 6.40e-20 | 84.7 |
Find 31 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGTTCTGAAGGTGGTTT+TGG | 0.150297 | 7.3:+87867806 | None:intergenic |
| TCTTGTTCTGAAGGTGGTTT+TGG | 0.150297 | 7.3:+87871325 | None:intergenic |
| TCTCACAAGGTTGTTGTTAA+AGG | 0.240377 | 7.3:-87867908 | MS.gene79603:CDS |
| TCTCACAAGGTTGTTGTTAA+AGG | 0.240377 | 7.3:-87871427 | MS.gene79603:CDS |
| CACACATACCTCAGAAGAAT+AGG | 0.379393 | 7.3:+87868055 | None:intergenic |
| GGATGATCTGCAATTCCGTT+TGG | 0.393696 | 7.3:+87868077 | None:intergenic |
| GATGATCTGCAATTCCGTTT+GGG | 0.412498 | 7.3:+87868078 | None:intergenic |
| ACTCTTTCAAGAACCTTCAA+TGG | 0.419505 | 7.3:+87867872 | None:intergenic |
| ACTCTTTCAAGAACCTTCAA+TGG | 0.419505 | 7.3:+87871391 | None:intergenic |
| TCTGCAATTCCGTTTGGGAT+CGG | 0.488973 | 7.3:+87868083 | None:intergenic |
| ACACATACCTCAGAAGAATA+GGG | 0.489219 | 7.3:+87868056 | None:intergenic |
| CCTAGGTCGCCGATCCCAAA+CGG | 0.496575 | 7.3:-87868092 | MS.gene79603:intron |
| AGGAAAAGCGGATCCATTGA+AGG | 0.529001 | 7.3:-87867885 | MS.gene79603:CDS |
| AGGAAAAGCGGATCCATTGA+AGG | 0.529001 | 7.3:-87871404 | MS.gene79603:CDS |
| CACAAGGTTGTTGTTAAAGG+AGG | 0.529622 | 7.3:-87867905 | MS.gene79603:CDS |
| CACAAGGTTGTTGTTAAAGG+AGG | 0.529622 | 7.3:-87871424 | MS.gene79603:CDS |
| GGAAGAAAAGAAAGCTGAAG+AGG | 0.538975 | 7.3:-87867747 | MS.gene79603:CDS |
| GGAAGAAAAGAAAGCTGAAG+AGG | 0.538975 | 7.3:-87871266 | MS.gene79603:intron |
| GATTTATAATTATGAAGATG+TGG | 0.554215 | 7.3:-87867945 | MS.gene79603:CDS |
| GATTTATAATTATGAAGATG+TGG | 0.554215 | 7.3:-87871464 | MS.gene79603:CDS |
| AGAATCACTATCATAACCTT+AGG | 0.564388 | 7.3:+87871157 | None:intergenic |
| GAAAGAGAAACCTAAGCCAG+AGG | 0.586865 | 7.3:-87867768 | MS.gene79603:CDS |
| GAAAGAGAAACCTAAGCCAG+AGG | 0.586865 | 7.3:-87871287 | MS.gene79603:CDS |
| AGACGCATTGAGAAAATCAA+AGG | 0.589980 | 7.3:-87871091 | MS.gene79603:CDS |
| AGATCATCCCTATTCTTCTG+AGG | 0.615527 | 7.3:-87868063 | MS.gene79603:intron |
| TACTGATTGCAAATCTCACA+AGG | 0.615533 | 7.3:-87867921 | MS.gene79603:CDS |
| TACTGATTGCAAATCTCACA+AGG | 0.615533 | 7.3:-87871440 | MS.gene79603:CDS |
| AGGTTCTTGAAAGAGTTCAG+AGG | 0.645167 | 7.3:-87867865 | MS.gene79603:CDS |
| AGGTTCTTGAAAGAGTTCAG+AGG | 0.645167 | 7.3:-87871384 | MS.gene79603:CDS |
| TGTTGTTAAAGGAGGAAAAG+CGG | 0.659544 | 7.3:-87867897 | MS.gene79603:CDS |
| TGTTGTTAAAGGAGGAAAAG+CGG | 0.659544 | 7.3:-87871416 | MS.gene79603:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCAAAAATAAAAAACATA+TGG | + | chr7.3:87868721-87868740 | None:intergenic | 10.0% |
| !!! | ATCATTCTTATTTTATTATA+TGG | - | chr7.3:87868112-87868131 | MS.gene79603:intron | 10.0% |
| !!! | GTTGTTTTTTAAAATAAAAT+CGG | - | chr7.3:87870347-87870366 | MS.gene79603:intron | 10.0% |
| !! | ATGAAATTATTATTGTTAGA+TGG | + | chr7.3:87869604-87869623 | None:intergenic | 15.0% |
| !! | TATTCAAAACAACTTATATA+TGG | + | chr7.3:87870098-87870117 | None:intergenic | 15.0% |
| !!! | GTTGTTTTTTAAAATGAAAT+CGG | - | chr7.3:87870119-87870138 | MS.gene79603:intron | 15.0% |
| !! | AAACCAAAATAATTGTCTAA+TGG | + | chr7.3:87869495-87869514 | None:intergenic | 20.0% |
| !! | AAACCAAACTAATTGTTTAA+TGG | + | chr7.3:87868877-87868896 | None:intergenic | 20.0% |
| !! | AAACCATAATTATGGTTTAA+TGG | + | chr7.3:87869538-87869557 | None:intergenic | 20.0% |
| !! | AAACCATTAAACAATTAGTT+TGG | - | chr7.3:87868871-87868890 | MS.gene79603:intron | 20.0% |
| !! | AAACCATTAAACCATAATTA+TGG | - | chr7.3:87869532-87869551 | MS.gene79603:intron | 20.0% |
| !! | AAATCATTACACATTTATCT+TGG | - | chr7.3:87869627-87869646 | MS.gene79603:intron | 20.0% |
| !! | AAATTTATTTGAATCTGTGA+TGG | - | chr7.3:87868080-87868099 | MS.gene79603:CDS | 20.0% |
| !! | GATTTATAATTATGAAGATG+TGG | - | chr7.3:87867833-87867852 | MS.gene79603:CDS | 20.0% |
| !! | TATTACTGAAACCATAATTA+TGG | + | chr7.3:87869546-87869565 | None:intergenic | 20.0% |
| !!! | AAACCATTAGACAATTATTT+TGG | - | chr7.3:87869489-87869508 | MS.gene79603:intron | 20.0% |
| !!! | ATTAGAGATTGATTTGAATT+TGG | - | chr7.3:87868552-87868571 | MS.gene79603:intron | 20.0% |
| !!! | TATTACAAAACCATTTTCAT+TGG | - | chr7.3:87869229-87869248 | MS.gene79603:intron | 20.0% |
| !!! | TTAGAGATTGATTTGAATTT+GGG | - | chr7.3:87868553-87868572 | MS.gene79603:intron | 20.0% |
| !!! | TTTAAAATGAAATCGGAATA+AGG | - | chr7.3:87870126-87870145 | MS.gene79603:intron | 20.0% |
| !!! | TTTATTTCATTCACTTGTTT+TGG | - | chr7.3:87868275-87868294 | MS.gene79603:intron | 20.0% |
| ! | AAACCATTAAGTACATCTAA+TGG | - | chr7.3:87868768-87868787 | MS.gene79603:intron | 25.0% |
| ! | AAACCATTAGATGTACTTAA+TGG | + | chr7.3:87868774-87868793 | None:intergenic | 25.0% |
| ! | AGAAATTGTCGAAATCAAAT+TGG | - | chr7.3:87868600-87868619 | MS.gene79603:intron | 25.0% |
| ! | GAAATTGTCGAAATCAAATT+GGG | - | chr7.3:87868601-87868620 | MS.gene79603:intron | 25.0% |
| ! | GAATTCAAACACAAAATCAT+CGG | + | chr7.3:87868348-87868367 | None:intergenic | 25.0% |
| ! | TAAATATAATCGCGCTTTAA+TGG | + | chr7.3:87869051-87869070 | None:intergenic | 25.0% |
| ! | TATAAGTGTGTACTATTAAG+TGG | - | chr7.3:87869168-87869187 | MS.gene79603:intron | 25.0% |
| ! | TTTGGTTACATATAGATGAT+GGG | - | chr7.3:87868390-87868409 | MS.gene79603:intron | 25.0% |
| !! | AAAACCATTTTCATTGGAAT+TGG | - | chr7.3:87869235-87869254 | MS.gene79603:intron | 25.0% |
| !! | AAACCATTTTCATTGGAATT+GGG | - | chr7.3:87869236-87869255 | MS.gene79603:intron | 25.0% |
| !! | GAGATTTCAATTTTGAATTG+CGG | - | chr7.3:87867787-87867806 | MS.gene79603:CDS | 25.0% |
| !! | TTAAGTACATCTAATGGTTT+TGG | - | chr7.3:87868774-87868793 | MS.gene79603:intron | 25.0% |
| !!! | ATTGTTTAATGGTTTTGCTA+TGG | + | chr7.3:87868866-87868885 | None:intergenic | 25.0% |
| !!! | ATTTTTTTCTCTTGTTCTGA+AGG | + | chr7.3:87867984-87868003 | None:intergenic | 25.0% |
| !!! | CTTGCTATGATTTTCAATTT+TGG | - | chr7.3:87868372-87868391 | MS.gene79603:intron | 25.0% |
| !!! | GTTTTGAAAATGTTCTGTTA+TGG | - | chr7.3:87868685-87868704 | MS.gene79603:intron | 25.0% |
| !!! | TCTTGATTTTTGGAAGAAAA+AGG | - | chr7.3:87868465-87868484 | MS.gene79603:intron | 25.0% |
| !!! | TTGTTTAATGGTTTTGCTAT+GGG | + | chr7.3:87868865-87868884 | None:intergenic | 25.0% |
| !!! | TTTTGGTTACATATAGATGA+TGG | - | chr7.3:87868389-87868408 | MS.gene79603:intron | 25.0% |
| AAACAGTTTATTCGATTCCT+AGG | - | chr7.3:87871188-87871207 | MS.gene79603:intron | 30.0% | |
| AAACCATAAGTGTGGTTTAA+TGG | + | chr7.3:87868920-87868939 | None:intergenic | 30.0% | |
| AAACCATTAAACCACACTTA+TGG | - | chr7.3:87868914-87868933 | MS.gene79603:intron | 30.0% | |
| AGAATCACTATCATAACCTT+AGG | + | chr7.3:87868143-87868162 | None:intergenic | 30.0% | |
| GAATTTGGGAAAATTGATGA+TGG | - | chr7.3:87868567-87868586 | MS.gene79603:intron | 30.0% | |
| TATTACTGAAACCATAAGTG+TGG | + | chr7.3:87868928-87868947 | None:intergenic | 30.0% | |
| TCCAAAAATCAAGAATGCAA+AGG | + | chr7.3:87868459-87868478 | None:intergenic | 30.0% | |
| TGGATTATGAGTTTCTTTAC+TGG | + | chr7.3:87869737-87869756 | None:intergenic | 30.0% | |
| TGTTGCTAAGAATTCAAAGT+TGG | - | chr7.3:87868647-87868666 | MS.gene79603:intron | 30.0% | |
| TTTCCCAATTCCAATGAAAA+TGG | + | chr7.3:87869242-87869261 | None:intergenic | 30.0% | |
| ! | AAACCATTTTCACTGCAAAA+TGG | - | chr7.3:87869387-87869406 | MS.gene79603:intron | 30.0% |
| ! | AAACCATTTTGCAGTGAAAA+TGG | + | chr7.3:87869393-87869412 | None:intergenic | 30.0% |
| ! | TCCTTTGCATTCTTGATTTT+TGG | - | chr7.3:87868455-87868474 | MS.gene79603:intron | 30.0% |
| ! | TTTTCAAAACCATCAGATTC+AGG | + | chr7.3:87868675-87868694 | None:intergenic | 30.0% |
| ! | TTTTCACTGCAAAATGGTTT+TGG | - | chr7.3:87869393-87869412 | MS.gene79603:intron | 30.0% |
| !! | ATATAGATGATGGGTTTGAT+TGG | - | chr7.3:87868399-87868418 | MS.gene79603:intron | 30.0% |
| !! | ATTGTCTAATGGTTTTGCTA+TGG | + | chr7.3:87869484-87869503 | None:intergenic | 30.0% |
| !! | TGTGTTGTTTATGATCAATC+CGG | - | chr7.3:87869335-87869354 | MS.gene79603:intron | 30.0% |
| AAACCATTTCCACAGCAAAA+TGG | - | chr7.3:87868811-87868830 | MS.gene79603:intron | 35.0% | |
| ACACATACCTCAGAAGAATA+GGG | + | chr7.3:87871244-87871263 | None:intergenic | 35.0% | |
| ACAGTTGACAAATTCCTGAA+AGG | + | chr7.3:87868320-87868339 | None:intergenic | 35.0% | |
| ACTCTTTCAAGAACCTTCAA+TGG | + | chr7.3:87867909-87867928 | None:intergenic | 35.0% | |
| AGACGCATTGAGAAAATCAA+AGG | - | chr7.3:87868206-87868225 | MS.gene79603:intron | 35.0% | |
| GAAATAAAAGAGAGATGACG+AGG | - | chr7.3:87869102-87869121 | MS.gene79603:intron | 35.0% | |
| GTTAGAGAGAGTAATGAGTA+TGG | + | chr7.3:87869757-87869776 | None:intergenic | 35.0% | |
| TGAAATCTGTTGGTATAAGC+TGG | - | chr7.3:87869272-87869291 | MS.gene79603:intron | 35.0% | |
| TGACAAATTCCTGAAAGGAT+GGG | + | chr7.3:87868315-87868334 | None:intergenic | 35.0% | |
| TGATTCGATGTGAAATCTGT+TGG | - | chr7.3:87869262-87869281 | MS.gene79603:intron | 35.0% | |
| TGTTGTTAAAGGAGGAAAAG+CGG | - | chr7.3:87867881-87867900 | MS.gene79603:CDS | 35.0% | |
| TGTTTATGATCAATCCGGTT+CGG | - | chr7.3:87869340-87869359 | MS.gene79603:intron | 35.0% | |
| TTATTATATGGTGCAGCCTA+AGG | - | chr7.3:87868124-87868143 | MS.gene79603:intron | 35.0% | |
| TTGACAAATTCCTGAAAGGA+TGG | + | chr7.3:87868316-87868335 | None:intergenic | 35.0% | |
| ! | GTTTCAAAACCATTTTGCTG+TGG | + | chr7.3:87869442-87869461 | None:intergenic | 35.0% |
| ! | TACTGATTGCAAATCTCACA+AGG | - | chr7.3:87867857-87867876 | MS.gene79603:CDS | 35.0% |
| ! | TCTCACAAGGTTGTTGTTAA+AGG | - | chr7.3:87867870-87867889 | MS.gene79603:CDS | 35.0% |
| ! | TGGTTTTCTTTGATCCAACA+TGG | + | chr7.3:87868754-87868773 | None:intergenic | 35.0% |
| ! | TTTCCACAGCAAAATGGTTT+TGG | - | chr7.3:87868817-87868836 | MS.gene79603:intron | 35.0% |
| !! | AAACCATTTTGCTGTGGAAA+TGG | + | chr7.3:87868817-87868836 | None:intergenic | 35.0% |
| !! | TAATGGTTTTGCTATGGCTA+TGG | + | chr7.3:87869478-87869497 | None:intergenic | 35.0% |
| !! | TAATGGTTTTGCTATGGGTA+TGG | + | chr7.3:87868860-87868879 | None:intergenic | 35.0% |
| !!! | CTTGTTTTGGTTCAATTCTC+AGG | - | chr7.3:87868288-87868307 | MS.gene79603:intron | 35.0% |
| !!! | TTTTTCTCTTGTTCTGAAGG+TGG | + | chr7.3:87867981-87868000 | None:intergenic | 35.0% |
| AGATCATCCCTATTCTTCTG+AGG | - | chr7.3:87871234-87871253 | MS.gene79603:intron | 40.0% | |
| AGGTTCTTGAAAGAGTTCAG+AGG | - | chr7.3:87867913-87867932 | MS.gene79603:CDS | 40.0% | |
| CACACATACCTCAGAAGAAT+AGG | + | chr7.3:87871245-87871264 | None:intergenic | 40.0% | |
| GACGAGGCTTTACAAAAAAG+TGG | - | chr7.3:87869118-87869137 | MS.gene79603:intron | 40.0% | |
| GAGAATTGGGAGTAATGAGT+TGG | - | chr7.3:87868525-87868544 | MS.gene79603:intron | 40.0% | |
| GATGATCTGCAATTCCGTTT+GGG | + | chr7.3:87871222-87871241 | None:intergenic | 40.0% | |
| GATTGTGATATGCACCATGT+TGG | - | chr7.3:87868737-87868756 | MS.gene79603:intron | 40.0% | |
| GGAAGAAAAGAAAGCTGAAG+AGG | - | chr7.3:87868031-87868050 | MS.gene79603:intron | 40.0% | |
| ! | AATTGGGAGTAATGAGTTGG+AGG | - | chr7.3:87868528-87868547 | MS.gene79603:intron | 40.0% |
| ! | ACTCCAAAACCATTTTGCTG+TGG | + | chr7.3:87868823-87868842 | None:intergenic | 40.0% |
| ! | CACAAGGTTGTTGTTAAAGG+AGG | - | chr7.3:87867873-87867892 | MS.gene79603:CDS | 40.0% |
| ! | TCAGCTTTCTTTTCTTCCTC+TGG | + | chr7.3:87868029-87868048 | None:intergenic | 40.0% |
| ! | TCTGGTGTTAGCATTACTCA+CGG | - | chr7.3:87869364-87869383 | MS.gene79603:intron | 40.0% |
| !! | GATGATGGGTTTGATTGGTT+TGG | - | chr7.3:87868404-87868423 | MS.gene79603:intron | 40.0% |
| !! | GGGAAAATTGATGATGGACT+TGG | - | chr7.3:87868573-87868592 | MS.gene79603:intron | 40.0% |
| !! | TTCTTTTCTTCCTCTGGCTT+AGG | + | chr7.3:87868023-87868042 | None:intergenic | 40.0% |
| !!! | CTTGTTCTGAAGGTGGTTTT+GGG | + | chr7.3:87867974-87867993 | None:intergenic | 40.0% |
| !!! | TCTTGTTCTGAAGGTGGTTT+TGG | + | chr7.3:87867975-87867994 | None:intergenic | 40.0% |
| ACGTTGAAGAGGAGGAGAAT+TGG | - | chr7.3:87868511-87868530 | MS.gene79603:intron | 45.0% | |
| AGGAAAAGCGGATCCATTGA+AGG | - | chr7.3:87867893-87867912 | MS.gene79603:CDS | 45.0% | |
| CGTTGAAGAGGAGGAGAATT+GGG | - | chr7.3:87868512-87868531 | MS.gene79603:intron | 45.0% | |
| GAAAGAGAAACCTAAGCCAG+AGG | - | chr7.3:87868010-87868029 | MS.gene79603:intron | 45.0% | |
| GGATGATCTGCAATTCCGTT+TGG | + | chr7.3:87871223-87871242 | None:intergenic | 45.0% | |
| TGGCTATGGTTTCTGTGAGT+TGG | + | chr7.3:87869464-87869483 | None:intergenic | 45.0% | |
| ! | AGGACGACGTTGATTGTGAA+AGG | - | chr7.3:87868485-87868504 | MS.gene79603:intron | 45.0% |
| ! | TCTGCAATTCCGTTTGGGAT+CGG | + | chr7.3:87871217-87871236 | None:intergenic | 45.0% |
| !! | AAGTTGGTGCCTGAATCTGA+TGG | - | chr7.3:87868663-87868682 | MS.gene79603:intron | 45.0% |
| !! | GGTTTGGTGATGAAGTTTGC+TGG | - | chr7.3:87868420-87868439 | MS.gene79603:intron | 45.0% |
| !!! | TCTGAAGGTGGTTTTGGGAT+CGG | + | chr7.3:87867969-87867988 | None:intergenic | 45.0% |
| AAAGGACGACGTTGAAGAGG+AGG | - | chr7.3:87868503-87868522 | MS.gene79603:intron | 50.0% | |
| GTGAAAGGACGACGTTGAAG+AGG | - | chr7.3:87868500-87868519 | MS.gene79603:intron | 50.0% | |
| TGCTAACACCAGATCCGAAC+CGG | + | chr7.3:87869357-87869376 | None:intergenic | 50.0% | |
| TTCTCAGGTCCCATCCTTTC+AGG | - | chr7.3:87868303-87868322 | MS.gene79603:intron | 50.0% | |
| !! | TGATCAATCCGGTTCGGATC+TGG | - | chr7.3:87869346-87869365 | MS.gene79603:intron | 50.0% |
| CCTAGGTCGCCGATCCCAAA+CGG | - | chr7.3:87871205-87871224 | MS.gene79603:intron | 60.0% | |
| ! | CCGTTTGGGATCGGCGACCT+AGG | + | chr7.3:87871208-87871227 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 87867739 | 87871580 | 87867739 | ID=MS.gene79603 |
| chr7.3 | mRNA | 87867739 | 87871580 | 87867739 | ID=MS.gene79603.t1;Parent=MS.gene79603 |
| chr7.3 | exon | 87871575 | 87871580 | 87871575 | ID=MS.gene79603.t1.exon1;Parent=MS.gene79603.t1 |
| chr7.3 | CDS | 87871575 | 87871580 | 87871575 | ID=cds.MS.gene79603.t1;Parent=MS.gene79603.t1 |
| chr7.3 | exon | 87871267 | 87871485 | 87871267 | ID=MS.gene79603.t1.exon2;Parent=MS.gene79603.t1 |
| chr7.3 | CDS | 87871267 | 87871485 | 87871267 | ID=cds.MS.gene79603.t1;Parent=MS.gene79603.t1 |
| chr7.3 | exon | 87871088 | 87871179 | 87871088 | ID=MS.gene79603.t1.exon3;Parent=MS.gene79603.t1 |
| chr7.3 | CDS | 87871088 | 87871179 | 87871088 | ID=cds.MS.gene79603.t1;Parent=MS.gene79603.t1 |
| chr7.3 | exon | 87868064 | 87868109 | 87868064 | ID=MS.gene79603.t1.exon4;Parent=MS.gene79603.t1 |
| chr7.3 | CDS | 87868064 | 87868109 | 87868064 | ID=cds.MS.gene79603.t1;Parent=MS.gene79603.t1 |
| chr7.3 | exon | 87867739 | 87867966 | 87867739 | ID=MS.gene79603.t1.exon5;Parent=MS.gene79603.t1 |
| chr7.3 | CDS | 87867739 | 87867966 | 87867739 | ID=cds.MS.gene79603.t1;Parent=MS.gene79603.t1 |
| Gene Sequence |
| Protein sequence |
