Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80626.t1 | XP_003616526.1 | 97 | 576 | 17 | 0 | 1 | 576 | 1 | 576 | 0.00E+00 | 1120.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80626.t1 | F4K295 | 59.7 | 546 | 202 | 12 | 42 | 574 | 63 | 603 | 1.2e-167 | 591.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80626.t1 | F6LPU5 | 97.0 | 576 | 17 | 0 | 1 | 576 | 1 | 576 | 0.0e+00 | 1120.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene80626 | 0.811345 | 7.33E-51 | -1.69E-46 |
| MS.gene050297 | MS.gene80626 | 0.823964 | 1.04E-53 | -1.69E-46 |
| MS.gene051955 | MS.gene80626 | 0.823155 | 1.61E-53 | -1.69E-46 |
| MS.gene052308 | MS.gene80626 | 0.805447 | 1.33E-49 | -1.69E-46 |
| MS.gene052367 | MS.gene80626 | 0.830093 | 3.57E-55 | -1.69E-46 |
| MS.gene055578 | MS.gene80626 | 0.826384 | 2.79E-54 | -1.69E-46 |
| MS.gene055579 | MS.gene80626 | 0.840981 | 6.27E-58 | -1.69E-46 |
| MS.gene055957 | MS.gene80626 | 0.836576 | 8.63E-57 | -1.69E-46 |
| MS.gene056041 | MS.gene80626 | 0.859265 | 4.66E-63 | -1.69E-46 |
| MS.gene056042 | MS.gene80626 | 0.846985 | 1.54E-59 | -1.69E-46 |
| MS.gene056526 | MS.gene80626 | 0.814962 | 1.18E-51 | -1.69E-46 |
| MS.gene058196 | MS.gene80626 | 0.836566 | 8.68E-57 | -1.69E-46 |
| MS.gene058197 | MS.gene80626 | 0.813045 | 3.12E-51 | -1.69E-46 |
| MS.gene058198 | MS.gene80626 | 0.816538 | 5.25E-52 | -1.69E-46 |
| MS.gene058853 | MS.gene80626 | 0.822649 | 2.12E-53 | -1.69E-46 |
| MS.gene059300 | MS.gene80626 | 0.803281 | 3.76E-49 | -1.69E-46 |
| MS.gene059553 | MS.gene80626 | 0.823041 | 1.71E-53 | -1.69E-46 |
| MS.gene060473 | MS.gene80626 | 0.861343 | 1.10E-63 | -1.69E-46 |
| MS.gene060565 | MS.gene80626 | 0.858146 | 1.01E-62 | -1.69E-46 |
| MS.gene06057 | MS.gene80626 | 0.813246 | 2.82E-51 | -1.69E-46 |
| MS.gene061099 | MS.gene80626 | 0.827639 | 1.40E-54 | -1.69E-46 |
| MS.gene061260 | MS.gene80626 | 0.846888 | 1.64E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80626.t1 | MTR_5g081410 | 97.049 | 576 | 17 | 0 | 1 | 576 | 1 | 576 | 0.0 | 1163 |
| MS.gene80626.t1 | MTR_3g069590 | 68.317 | 606 | 145 | 14 | 1 | 572 | 1 | 593 | 0.0 | 778 |
| MS.gene80626.t1 | MTR_7g065220 | 65.208 | 457 | 154 | 2 | 84 | 539 | 186 | 638 | 0.0 | 630 |
| MS.gene80626.t1 | MTR_3g069590 | 69.704 | 439 | 99 | 7 | 1 | 413 | 1 | 431 | 0.0 | 594 |
| MS.gene80626.t1 | MTR_4g019770 | 62.269 | 432 | 153 | 3 | 42 | 469 | 54 | 479 | 0.0 | 543 |
| MS.gene80626.t1 | MTR_4g075640 | 52.686 | 484 | 197 | 7 | 84 | 558 | 89 | 549 | 4.27e-163 | 476 |
| MS.gene80626.t1 | MTR_8g030850 | 56.000 | 375 | 144 | 4 | 84 | 445 | 99 | 465 | 4.48e-137 | 407 |
| MS.gene80626.t1 | MTR_7g077690 | 51.675 | 418 | 138 | 4 | 84 | 445 | 115 | 524 | 1.70e-130 | 392 |
| MS.gene80626.t1 | MTR_6g087700 | 49.744 | 390 | 168 | 6 | 84 | 464 | 98 | 468 | 3.98e-128 | 387 |
| MS.gene80626.t1 | MTR_2g101830 | 49.584 | 361 | 163 | 4 | 86 | 445 | 90 | 432 | 2.94e-122 | 371 |
| MS.gene80626.t1 | MTR_5g025960 | 45.822 | 371 | 191 | 2 | 75 | 445 | 111 | 471 | 4.35e-107 | 333 |
| MS.gene80626.t1 | MTR_4g013165 | 46.708 | 319 | 149 | 4 | 133 | 450 | 1 | 299 | 1.43e-99 | 308 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80626.t1 | AT5G05940 | 62.327 | 507 | 177 | 10 | 42 | 537 | 63 | 566 | 0.0 | 619 |
| MS.gene80626.t1 | AT5G02010 | 62.839 | 479 | 142 | 9 | 63 | 532 | 52 | 503 | 0.0 | 595 |
| MS.gene80626.t1 | AT3G55660 | 53.817 | 524 | 196 | 9 | 42 | 534 | 71 | 579 | 4.56e-178 | 515 |
| MS.gene80626.t1 | AT5G05940 | 65.067 | 375 | 126 | 3 | 42 | 413 | 63 | 435 | 4.61e-176 | 507 |
| MS.gene80626.t1 | AT4G38430 | 56.177 | 429 | 172 | 5 | 67 | 491 | 80 | 496 | 1.29e-163 | 478 |
| MS.gene80626.t1 | AT3G55660 | 59.788 | 378 | 135 | 5 | 42 | 413 | 71 | 437 | 1.51e-152 | 445 |
| MS.gene80626.t1 | AT4G00460 | 56.218 | 386 | 154 | 5 | 74 | 452 | 96 | 473 | 6.73e-143 | 422 |
| MS.gene80626.t1 | AT4G00460 | 56.218 | 386 | 154 | 5 | 74 | 452 | 96 | 473 | 6.73e-143 | 422 |
| MS.gene80626.t1 | AT1G01700 | 57.447 | 376 | 145 | 5 | 77 | 445 | 111 | 478 | 5.07e-140 | 415 |
| MS.gene80626.t1 | AT1G01700 | 53.202 | 406 | 145 | 6 | 77 | 445 | 111 | 508 | 1.41e-133 | 399 |
| MS.gene80626.t1 | AT3G24620 | 51.781 | 365 | 156 | 4 | 84 | 447 | 87 | 432 | 8.94e-132 | 395 |
| MS.gene80626.t1 | AT2G45890 | 51.979 | 379 | 161 | 6 | 84 | 452 | 95 | 462 | 7.78e-127 | 380 |
| MS.gene80626.t1 | AT4G13240 | 49.319 | 367 | 166 | 4 | 84 | 449 | 76 | 423 | 2.71e-125 | 378 |
| MS.gene80626.t1 | AT1G52240 | 51.366 | 366 | 155 | 5 | 86 | 450 | 108 | 451 | 5.05e-122 | 371 |
| MS.gene80626.t1 | AT1G79860 | 49.307 | 361 | 162 | 5 | 86 | 445 | 96 | 436 | 3.15e-121 | 368 |
| MS.gene80626.t1 | AT4G00460 | 53.959 | 341 | 142 | 5 | 119 | 452 | 8 | 340 | 1.72e-120 | 360 |
| MS.gene80626.t1 | AT1G01700 | 53.352 | 358 | 145 | 6 | 77 | 420 | 111 | 460 | 2.30e-117 | 356 |
| MS.gene80626.t1 | AT3G16130 | 49.180 | 366 | 168 | 5 | 86 | 450 | 94 | 442 | 1.48e-116 | 357 |
| MS.gene80626.t1 | AT5G19560 | 47.684 | 367 | 174 | 4 | 84 | 449 | 46 | 395 | 3.27e-115 | 352 |
| MS.gene80626.t1 | AT5G19560 | 47.684 | 367 | 174 | 4 | 84 | 449 | 46 | 395 | 3.27e-115 | 352 |
| MS.gene80626.t1 | AT5G19560 | 47.684 | 367 | 174 | 4 | 84 | 449 | 65 | 414 | 7.72e-115 | 351 |
| MS.gene80626.t1 | AT5G19560 | 46.224 | 331 | 160 | 4 | 84 | 413 | 65 | 378 | 2.30e-99 | 307 |
| MS.gene80626.t1 | AT1G31650 | 41.892 | 370 | 196 | 3 | 84 | 448 | 110 | 465 | 1.63e-97 | 308 |
| MS.gene80626.t1 | AT1G31650 | 41.892 | 370 | 196 | 3 | 84 | 448 | 138 | 493 | 5.27e-97 | 307 |
| MS.gene80626.t1 | AT4G00460 | 56.723 | 238 | 98 | 3 | 74 | 308 | 96 | 331 | 3.65e-82 | 261 |
| MS.gene80626.t1 | AT1G01700 | 59.276 | 221 | 87 | 2 | 77 | 294 | 111 | 331 | 6.98e-80 | 256 |
| MS.gene80626.t1 | AT1G01700 | 59.276 | 221 | 87 | 2 | 77 | 294 | 111 | 331 | 6.98e-80 | 256 |
| MS.gene80626.t1 | AT5G19560 | 44.964 | 278 | 135 | 4 | 173 | 449 | 5 | 265 | 1.10e-76 | 247 |
Find 112 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATGGCTGCTTTCAGTATT+TGG | 0.134248 | 5.4:+64185501 | None:intergenic |
| TAACATGGTTTCACAGAAAA+AGG | 0.190047 | 5.4:-64184357 | MS.gene80626:CDS |
| TTCATCTGATTTGCTGCATT+TGG | 0.225466 | 5.4:+64187021 | None:intergenic |
| GGAAGTTCCCGAGTCGTATT+TGG | 0.241485 | 5.4:-64185450 | MS.gene80626:CDS |
| TTGTTATTGTTGTGGATAAA+TGG | 0.242485 | 5.4:+64184224 | None:intergenic |
| GGTCTTCTTCATTTCCTATT+AGG | 0.245693 | 5.4:-64187057 | MS.gene80626:CDS |
| ACTCAACACAAAGCAAAATT+TGG | 0.247443 | 5.4:-64184302 | MS.gene80626:CDS |
| AGAAAGCTATTCAAGAGTTT+TGG | 0.254846 | 5.4:-64184477 | MS.gene80626:CDS |
| CAACATGTAGGAACTGTATT+TGG | 0.265120 | 5.4:-64186539 | MS.gene80626:intron |
| TCTTGAATAGCTTTCTAGTA+TGG | 0.268560 | 5.4:+64184484 | None:intergenic |
| AAACCTCAACGTCGCGGTTT+TGG | 0.279389 | 5.4:-64184191 | MS.gene80626:CDS |
| TTGTTGAGTTAATGCCTTCT+TGG | 0.293497 | 5.4:-64186427 | MS.gene80626:CDS |
| GCAGGAGGCACACGGGGTAC+TGG | 0.311400 | 5.4:+64185578 | None:intergenic |
| GAACTGTATTTGGACAATTA+TGG | 0.318046 | 5.4:-64186529 | MS.gene80626:CDS |
| GTTGCACTGCTATGGAGTTT+TGG | 0.323799 | 5.4:-64185691 | MS.gene80626:CDS |
| TGGAAATCTATCTGAATGTT+TGG | 0.339488 | 5.4:+64184394 | None:intergenic |
| GACATAGTGCCCTTCCTAAT+AGG | 0.352007 | 5.4:+64187043 | None:intergenic |
| TTCATTGAAGCAGCGCTTCC+CGG | 0.357161 | 5.4:-64184939 | MS.gene80626:CDS |
| TTATCATCAACTTGAGAAAC+AGG | 0.378270 | 5.4:+64186986 | None:intergenic |
| AGAAAAGTGGCAGAGAGAAA+TGG | 0.381993 | 5.4:-64186477 | MS.gene80626:CDS |
| CATCTGGTGCCACAATTCCT+TGG | 0.414903 | 5.4:+64185660 | None:intergenic |
| CTGATTTCTCTTGCGAAAAG+AGG | 0.416366 | 5.4:+64185625 | None:intergenic |
| CTCAAGTGCAACATGCTCAT+TGG | 0.420115 | 5.4:+64185135 | None:intergenic |
| GGACATTGTGAAGGACTTCA+TGG | 0.423504 | 5.4:-64185014 | MS.gene80626:CDS |
| CATAAATTGCGGCTTCTAAA+CGG | 0.424426 | 5.4:+64185104 | None:intergenic |
| CCCTTTGAAGGACTAATTAG+TGG | 0.432878 | 5.4:+64184257 | None:intergenic |
| GTGAAGGACTTCATGGTTGA+TGG | 0.439958 | 5.4:-64185007 | MS.gene80626:CDS |
| TAGAAGCCGCAATTTATGTA+TGG | 0.441628 | 5.4:-64185099 | MS.gene80626:CDS |
| TTTAGATAGTTGCACTGCTA+TGG | 0.442885 | 5.4:-64185699 | MS.gene80626:CDS |
| TCAGAATGGAAGAACGTGCT+TGG | 0.444622 | 5.4:-64185230 | MS.gene80626:intron |
| GGAGTTACCTCTCCCTTTGA+AGG | 0.445840 | 5.4:+64184245 | None:intergenic |
| CAGGAGGCACACGGGGTACT+GGG | 0.446468 | 5.4:+64185579 | None:intergenic |
| TCAGGATATGTTTGCCAAGA+AGG | 0.453625 | 5.4:+64186413 | None:intergenic |
| CAGAATGGAAGAACGTGCTT+GGG | 0.465023 | 5.4:-64185229 | MS.gene80626:CDS |
| GAGGCTGATCCATCTGCATC+TGG | 0.467719 | 5.4:+64185644 | None:intergenic |
| AGCATGAAACCTTGTTGCAT+TGG | 0.469347 | 5.4:+64184882 | None:intergenic |
| GCAAGCACTCTTGAGAGAAC+TGG | 0.473659 | 5.4:+64185176 | None:intergenic |
| TCATTGAAGCAGCGCTTCCC+GGG | 0.475313 | 5.4:-64184938 | MS.gene80626:CDS |
| CTGCTTGGTGAAGATATGTC+AGG | 0.475560 | 5.4:-64186749 | MS.gene80626:CDS |
| CAGCATTGCTTTAGATGACA+TGG | 0.484744 | 5.4:-64185471 | MS.gene80626:CDS |
| TTCTTCATTTCCTATTAGGA+AGG | 0.485913 | 5.4:-64187053 | MS.gene80626:CDS |
| AATGGGTCTTGTAGTTCCAC+TGG | 0.490578 | 5.4:-64187124 | MS.gene80626:CDS |
| GTTCGACTACAAAGTCATCC+TGG | 0.490964 | 5.4:-64185036 | MS.gene80626:CDS |
| GGTGAAGATATGTCAGGGTC+TGG | 0.491025 | 5.4:-64186743 | MS.gene80626:CDS |
| GTACCCCGTGTGCCTCCTGC+CGG | 0.499229 | 5.4:-64185575 | MS.gene80626:CDS |
| CTGCTTTCATCTCTCCTCCA+AGG | 0.501298 | 5.4:+64184144 | None:intergenic |
| TTGTCGAGTTTACGTAGAGC+TGG | 0.504038 | 5.4:+64185829 | None:intergenic |
| TAGATTTCCATTGGCACCAA+TGG | 0.506196 | 5.4:-64184381 | MS.gene80626:CDS |
| TGATATTGTTGTTATTGTTG+TGG | 0.506831 | 5.4:+64184216 | None:intergenic |
| GTATTTGGATACCCTTCCTA+AGG | 0.508742 | 5.4:-64185435 | MS.gene80626:intron |
| ATGTTAACCATTGGTGCCAA+TGG | 0.513125 | 5.4:+64184374 | None:intergenic |
| GATATGTCAGGGTCTGGAAA+AGG | 0.513629 | 5.4:-64186737 | MS.gene80626:CDS |
| ACATTCAGATAGATTTCCAT+TGG | 0.519216 | 5.4:-64184390 | MS.gene80626:CDS |
| ACCTCTAGCTTACTACCATC+AGG | 0.519299 | 5.4:+64186395 | None:intergenic |
| TCTTGAGTTCTCACTGAGAC+CGG | 0.521027 | 5.4:+64185556 | None:intergenic |
| ATGTAGTTTGACTTAAACCC+GGG | 0.524605 | 5.4:+64184921 | None:intergenic |
| TGGAAAATCAAACCTTAGGA+AGG | 0.525020 | 5.4:+64185423 | None:intergenic |
| ACACCAAAACCGCGACGTTG+AGG | 0.531446 | 5.4:+64184188 | None:intergenic |
| GAGTTCTCACTGAGACCGGC+AGG | 0.534877 | 5.4:+64185560 | None:intergenic |
| ATCAGCGGCAAGAGGAGAAG+TGG | 0.535708 | 5.4:-64185607 | MS.gene80626:CDS |
| GTGTTGTCAAATTACCTTGG+AGG | 0.537277 | 5.4:-64184158 | MS.gene80626:CDS |
| ATCAGGAGGGGATATAATGA+AGG | 0.538329 | 5.4:-64186789 | MS.gene80626:CDS |
| GCCACTAATTAGTCCTTCAA+AGG | 0.542594 | 5.4:-64184258 | MS.gene80626:CDS |
| ATGGATTGGCTTCTTTGTGT+TGG | 0.544302 | 5.4:-64186458 | MS.gene80626:CDS |
| AGAGTGTTGTCAAATTACCT+TGG | 0.555330 | 5.4:-64184161 | MS.gene80626:CDS |
| TCTTCATTTCCTATTAGGAA+GGG | 0.555428 | 5.4:-64187052 | MS.gene80626:CDS |
| ACTTTGTAGTCGAACGGCTA+GGG | 0.555981 | 5.4:+64185044 | None:intergenic |
| CCACTAATTAGTCCTTCAAA+GGG | 0.557284 | 5.4:-64184257 | MS.gene80626:CDS |
| AATTAGTCCTTCAAAGGGAG+AGG | 0.557362 | 5.4:-64184252 | MS.gene80626:CDS |
| GTGGTTTAGAGTGAGATCTC+TGG | 0.563305 | 5.4:+64185074 | None:intergenic |
| GAAGTCCTTCACAATGTCCC+AGG | 0.565686 | 5.4:+64185018 | None:intergenic |
| GACTTTGTAGTCGAACGGCT+AGG | 0.567248 | 5.4:+64185043 | None:intergenic |
| AAAAGGAGTTAGCACTGCAT+TGG | 0.568507 | 5.4:-64186720 | MS.gene80626:CDS |
| AGTGGCAGAGAGAAATGGAT+TGG | 0.572062 | 5.4:-64186472 | MS.gene80626:CDS |
| GGGTTTAAGTCAAACTACAT+TGG | 0.572158 | 5.4:-64184918 | MS.gene80626:CDS |
| TGACTTTGTAGGATCAGGAG+GGG | 0.572490 | 5.4:-64186801 | MS.gene80626:intron |
| GAAGGACTAATTAGTGGCAC+AGG | 0.574721 | 5.4:+64184263 | None:intergenic |
| TGAGACCGGCAGGAGGCACA+CGG | 0.577679 | 5.4:+64185570 | None:intergenic |
| CATGTGAAAAGAAAGAAAAG+TGG | 0.581474 | 5.4:-64186490 | MS.gene80626:CDS |
| AGGTTTGCGAAGTTACTGCT+TGG | 0.585242 | 5.4:-64186764 | MS.gene80626:CDS |
| TTCGACTACAAAGTCATCCT+GGG | 0.585548 | 5.4:-64185035 | MS.gene80626:CDS |
| GAGGGGATATAATGAAGGAA+AGG | 0.591071 | 5.4:-64186784 | MS.gene80626:CDS |
| TTTGACTTTGTAGGATCAGG+AGG | 0.593537 | 5.4:-64186803 | MS.gene80626:intron |
| TGTGAAACCATGTTAACCAT+TGG | 0.593683 | 5.4:+64184365 | None:intergenic |
| ATTGGCACCAATGGTTAACA+TGG | 0.597219 | 5.4:-64184372 | MS.gene80626:CDS |
| GAGACCGGCAGGAGGCACAC+GGG | 0.597490 | 5.4:+64185571 | None:intergenic |
| CAAGAGAAATCAGCGGCAAG+AGG | 0.598859 | 5.4:-64185615 | MS.gene80626:CDS |
| AATGCTATTACTAATTTGTG+TGG | 0.601531 | 5.4:-64186689 | MS.gene80626:intron |
| GTATGTTGACCAAGGAATTG+TGG | 0.604214 | 5.4:-64185669 | MS.gene80626:CDS |
| AGTGGCACAGGTGAATAACT+AGG | 0.609813 | 5.4:+64184275 | None:intergenic |
| TTGACTTTGTAGGATCAGGA+GGG | 0.610216 | 5.4:-64186802 | MS.gene80626:intron |
| AATGTAGTTTGACTTAAACC+CGG | 0.610470 | 5.4:+64184920 | None:intergenic |
| GTCATCCTGGGACATTGTGA+AGG | 0.614434 | 5.4:-64185023 | MS.gene80626:CDS |
| TGCTTGGTGAAGATATGTCA+GGG | 0.618748 | 5.4:-64186748 | MS.gene80626:CDS |
| AGCAATGCTGTTGATAGACA+TGG | 0.626027 | 5.4:+64185484 | None:intergenic |
| CTGGCGCCATACATAAATTG+CGG | 0.627878 | 5.4:+64185093 | None:intergenic |
| TCCTGATGGTAGTAAGCTAG+AGG | 0.628089 | 5.4:-64186396 | MS.gene80626:intron |
| TCTTGGCAAACATATCCTGA+TGG | 0.629177 | 5.4:-64186410 | MS.gene80626:CDS |
| AGGATGACTTTGTAGTCGAA+CGG | 0.629366 | 5.4:+64185038 | None:intergenic |
| AAGGGTATCCAAATACGACT+CGG | 0.630421 | 5.4:+64185442 | None:intergenic |
| GGAAAATCAAACCTTAGGAA+GGG | 0.632917 | 5.4:+64185424 | None:intergenic |
| ATCTGAGCAACACGATCCAG+TGG | 0.638385 | 5.4:+64187108 | None:intergenic |
| AGGGTATCCAAATACGACTC+GGG | 0.638687 | 5.4:+64185443 | None:intergenic |
| ATCATTAAACCTCAACGTCG+CGG | 0.638867 | 5.4:-64184197 | MS.gene80626:CDS |
| AGACCGGCAGGAGGCACACG+GGG | 0.642385 | 5.4:+64185572 | None:intergenic |
| GTCGAACGGCTAGGGTAGAG+TGG | 0.643760 | 5.4:+64185052 | None:intergenic |
| ATTGTGGCACCAGATGCAGA+TGG | 0.645033 | 5.4:-64185653 | MS.gene80626:CDS |
| AGCGGCAAGAGGAGAAGTGG+TGG | 0.645482 | 5.4:-64185604 | MS.gene80626:CDS |
| TAGCAAGATCCAATGCAACA+AGG | 0.662550 | 5.4:-64184891 | MS.gene80626:intron |
| TTCTCACTGAGACCGGCAGG+AGG | 0.665518 | 5.4:+64185563 | None:intergenic |
| GCACTCTTGAGAGAACTGGT+CGG | 0.681945 | 5.4:+64185180 | None:intergenic |
| GAACGGCTAGGGTAGAGTGG+TGG | 0.690009 | 5.4:+64185055 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAGATAAACAATTTAATT+AGG | + | chr5.4:64186632-64186651 | None:intergenic | 10.0% |
| !!! | TTATTTTATCTTTCTATAAA+TGG | - | chr5.4:64186533-64186552 | MS.gene80626:intron | 10.0% |
| !! | ACATTAAATTCACATATATA+AGG | + | chr5.4:64184848-64184867 | None:intergenic | 15.0% |
| !! | TTCAACAAAGATTAATAAAT+AGG | - | chr5.4:64184872-64184891 | MS.gene80626:intron | 15.0% |
| !!! | AATTTTCAAAAGAGAAAAAA+TGG | - | chr5.4:64184055-64184074 | MS.gene80626:CDS | 15.0% |
| !!! | ATTTTCAAAAGAGAAAAAAT+GGG | - | chr5.4:64184056-64184075 | MS.gene80626:CDS | 15.0% |
| !! | ATTGTTGATACTATATAATC+TGG | - | chr5.4:64185865-64185884 | MS.gene80626:CDS | 20.0% |
| !! | TACAAAGTCAAAACATAATA+AGG | + | chr5.4:64184386-64184405 | None:intergenic | 20.0% |
| !!! | ATTTTTTATTCTTCCAATGT+AGG | - | chr5.4:64185412-64185431 | MS.gene80626:intron | 20.0% |
| !!! | TGTTTCATTTTAAACATTTC+AGG | - | chr5.4:64186678-64186697 | MS.gene80626:intron | 20.0% |
| !!! | TTATTATGTTTTGACTTTGT+AGG | - | chr5.4:64184385-64184404 | MS.gene80626:CDS | 20.0% |
| !!! | TTCTTACAATTTGTTCAATT+GGG | - | chr5.4:64184627-64184646 | MS.gene80626:intron | 20.0% |
| !!! | TTTCTTACAATTTGTTCAAT+TGG | - | chr5.4:64184626-64184645 | MS.gene80626:intron | 20.0% |
| ! | AAATAAGCTGAAATGGTTTA+TGG | + | chr5.4:64186451-64186470 | None:intergenic | 25.0% |
| ! | AACAAGCAAAAATAGCAAAA+GGG | - | chr5.4:64184119-64184138 | MS.gene80626:CDS | 25.0% |
| ! | AGCAAAACTAATTTCACATT+AGG | + | chr5.4:64186513-64186532 | None:intergenic | 25.0% |
| ! | CTAAAATTTCCTGTTACATA+GGG | + | chr5.4:64185483-64185502 | None:intergenic | 25.0% |
| ! | CTTATGAAAATAAGCTGAAA+TGG | + | chr5.4:64186458-64186477 | None:intergenic | 25.0% |
| ! | GAAACATGTTAATATGAAGT+TGG | + | chr5.4:64186664-64186683 | None:intergenic | 25.0% |
| ! | TTATGTTCTGTTTAGTGTTT+AGG | - | chr5.4:64184289-64184308 | MS.gene80626:CDS | 25.0% |
| ! | TTCGTTTGATTGAAATAGAA+CGG | - | chr5.4:64184957-64184976 | MS.gene80626:CDS | 25.0% |
| ! | TTGATAAAAATGTCTGATCT+TGG | + | chr5.4:64185344-64185363 | None:intergenic | 25.0% |
| !! | AATGCTATTACTAATTTGTG+TGG | - | chr5.4:64184508-64184527 | MS.gene80626:intron | 25.0% |
| !! | TATTACTAATTTGTGTGGTA+TGG | - | chr5.4:64184513-64184532 | MS.gene80626:intron | 25.0% |
| !! | TCATTGCAATTTTAAACAAC+TGG | - | chr5.4:64186367-64186386 | MS.gene80626:intron | 25.0% |
| !! | TCTAAAATTTCCTGTTACAT+AGG | + | chr5.4:64185484-64185503 | None:intergenic | 25.0% |
| !! | TGATATTGTTGTTATTGTTG+TGG | + | chr5.4:64186984-64187003 | None:intergenic | 25.0% |
| !! | TTGTAACACATATTGATAGT+AGG | - | chr5.4:64184542-64184561 | MS.gene80626:intron | 25.0% |
| !! | TTGTTATTGTTGTGGATAAA+TGG | + | chr5.4:64186976-64186995 | None:intergenic | 25.0% |
| !! | TTTTAAACATTTCAGGATGT+TGG | - | chr5.4:64186685-64186704 | MS.gene80626:intron | 25.0% |
| !!! | AGCTGTTTTTGTAAGTTATT+TGG | + | chr5.4:64186486-64186505 | None:intergenic | 25.0% |
| !!! | ATGTTAATATGAAGTTGGTA+GGG | + | chr5.4:64186659-64186678 | None:intergenic | 25.0% |
| !!! | CAAATTTCGAGTTTTCAATT+TGG | + | chr5.4:64185173-64185192 | None:intergenic | 25.0% |
| !!! | GCTGTTTTTGTAAGTTATTT+GGG | + | chr5.4:64186485-64186504 | None:intergenic | 25.0% |
| !!! | GTTAACTTTTTCTTGTGTTA+TGG | - | chr5.4:64184587-64184606 | MS.gene80626:intron | 25.0% |
| AAAGTTCAAACAACGTATCA+TGG | + | chr5.4:64185948-64185967 | None:intergenic | 30.0% | |
| AACGGTCTATATTTCATGTT+TGG | - | chr5.4:64184975-64184994 | MS.gene80626:CDS | 30.0% | |
| AAGTTCAAACAACGTATCAT+GGG | + | chr5.4:64185947-64185966 | None:intergenic | 30.0% | |
| AATCATACAAAGTAGAGAGT+AGG | + | chr5.4:64184899-64184918 | None:intergenic | 30.0% | |
| ACACTAAACAGAACATAACA+AGG | + | chr5.4:64184287-64184306 | None:intergenic | 30.0% | |
| ACATTCAGATAGATTTCCAT+TGG | - | chr5.4:64186807-64186826 | MS.gene80626:intron | 30.0% | |
| ACTCAACACAAAGCAAAATT+TGG | - | chr5.4:64186895-64186914 | MS.gene80626:intron | 30.0% | |
| ACTCTCTACTTTGTATGATT+AGG | - | chr5.4:64184899-64184918 | MS.gene80626:CDS | 30.0% | |
| AGTATCAGCTCAAAAATTTC+TGG | - | chr5.4:64184244-64184263 | MS.gene80626:CDS | 30.0% | |
| ATCATACAAAGTAGAGAGTA+GGG | + | chr5.4:64184898-64184917 | None:intergenic | 30.0% | |
| ATTGTATCATCAACAGATCT+TGG | - | chr5.4:64186396-64186415 | MS.gene80626:intron | 30.0% | |
| CATGTGAAAAGAAAGAAAAG+TGG | - | chr5.4:64184707-64184726 | MS.gene80626:intron | 30.0% | |
| CTCTCTACTTTGTATGATTA+GGG | - | chr5.4:64184900-64184919 | MS.gene80626:CDS | 30.0% | |
| CTGAACAGCTAAATAGAAAT+TGG | - | chr5.4:64185126-64185145 | MS.gene80626:CDS | 30.0% | |
| GAACAAGCAAAAATAGCAAA+AGG | - | chr5.4:64184118-64184137 | MS.gene80626:CDS | 30.0% | |
| GAACTGTATTTGGACAATTA+TGG | - | chr5.4:64184668-64184687 | MS.gene80626:intron | 30.0% | |
| TAACATGGTTTCACAGAAAA+AGG | - | chr5.4:64186840-64186859 | MS.gene80626:intron | 30.0% | |
| TATGTGGAAAATCAAACCTT+AGG | + | chr5.4:64185781-64185800 | None:intergenic | 30.0% | |
| TCTTCATTTCCTATTAGGAA+GGG | - | chr5.4:64184145-64184164 | MS.gene80626:CDS | 30.0% | |
| TGATACATGATAGAACGTTA+TGG | - | chr5.4:64185897-64185916 | MS.gene80626:intron | 30.0% | |
| TGGAAATCTATCTGAATGTT+TGG | + | chr5.4:64186806-64186825 | None:intergenic | 30.0% | |
| TTATCATCAACTTGAGAAAC+AGG | + | chr5.4:64184214-64184233 | None:intergenic | 30.0% | |
| TTCTTCATTTCCTATTAGGA+AGG | - | chr5.4:64184144-64184163 | MS.gene80626:CDS | 30.0% | |
| TTGATCAAAATCAGATGACT+CGG | - | chr5.4:64185028-64185047 | MS.gene80626:CDS | 30.0% | |
| ! | AAGATCTCAATCGATTTATG+TGG | + | chr5.4:64185797-64185816 | None:intergenic | 30.0% |
| ! | AATGTAGTTTGACTTAAACC+CGG | + | chr5.4:64186280-64186299 | None:intergenic | 30.0% |
| ! | AGAAAGCTATTCAAGAGTTT+TGG | - | chr5.4:64186720-64186739 | MS.gene80626:CDS | 30.0% |
| ! | CACTTTTCTTTCTTTTCACA+TGG | + | chr5.4:64184709-64184728 | None:intergenic | 30.0% |
| ! | CATGTTAATATGAAGTTGGT+AGG | + | chr5.4:64186660-64186679 | None:intergenic | 30.0% |
| ! | TCTTGAATAGCTTTCTAGTA+TGG | + | chr5.4:64186716-64186735 | None:intergenic | 30.0% |
| !! | AGAAATTTTTGAGCTGATAC+TGG | + | chr5.4:64184245-64184264 | None:intergenic | 30.0% |
| !!! | TCATTTTGACTTGCTTTTCA+TGG | + | chr5.4:64187172-64187191 | None:intergenic | 30.0% |
| ACCAATGAAAATTTGACAGC+AGG | + | chr5.4:64185082-64185101 | None:intergenic | 35.0% | |
| AGGTAGTAGTAGTACTAGTA+AGG | + | chr5.4:64185227-64185246 | None:intergenic | 35.0% | |
| ATTTAGCTGTTCAGATAGAC+TGG | + | chr5.4:64185120-64185139 | None:intergenic | 35.0% | |
| CAACATGTAGGAACTGTATT+TGG | - | chr5.4:64184658-64184677 | MS.gene80626:intron | 35.0% | |
| CATAAATTGCGGCTTCTAAA+CGG | + | chr5.4:64186096-64186115 | None:intergenic | 35.0% | |
| CCACTAATTAGTCCTTCAAA+GGG | - | chr5.4:64186940-64186959 | MS.gene80626:intron | 35.0% | |
| CCCTACTAAATATATGCACA+CGG | + | chr5.4:64185265-64185284 | None:intergenic | 35.0% | |
| CCGTGTGCATATATTTAGTA+GGG | - | chr5.4:64185262-64185281 | MS.gene80626:intron | 35.0% | |
| CGTTGTTTGAACTTTCAGAA+TGG | - | chr5.4:64185953-64185972 | MS.gene80626:intron | 35.0% | |
| GGAAAATCAAACCTTAGGAA+GGG | + | chr5.4:64185776-64185795 | None:intergenic | 35.0% | |
| GGGTTTAAGTCAAACTACAT+TGG | - | chr5.4:64186279-64186298 | MS.gene80626:intron | 35.0% | |
| GGTAGTAGTAGTACTAGTAA+GGG | + | chr5.4:64185226-64185245 | None:intergenic | 35.0% | |
| GGTCTTCTTCATTTCCTATT+AGG | - | chr5.4:64184140-64184159 | MS.gene80626:CDS | 35.0% | |
| TAAATTGAGTCCCTGGTTAT+AGG | + | chr5.4:64185059-64185078 | None:intergenic | 35.0% | |
| TACACAATTGCAGCAAAGTA+TGG | + | chr5.4:64184325-64184344 | None:intergenic | 35.0% | |
| TAGAAGCCGCAATTTATGTA+TGG | - | chr5.4:64186098-64186117 | MS.gene80626:intron | 35.0% | |
| TCCGTGTGCATATATTTAGT+AGG | - | chr5.4:64185261-64185280 | MS.gene80626:intron | 35.0% | |
| TGGAAAATCAAACCTTAGGA+AGG | + | chr5.4:64185777-64185796 | None:intergenic | 35.0% | |
| TGTGAAACCATGTTAACCAT+TGG | + | chr5.4:64186835-64186854 | None:intergenic | 35.0% | |
| TTGTTGAGTTAATGCCTTCT+TGG | - | chr5.4:64184770-64184789 | MS.gene80626:intron | 35.0% | |
| TTTAGATAGTTGCACTGCTA+TGG | - | chr5.4:64185498-64185517 | MS.gene80626:CDS | 35.0% | |
| ! | ACCTGCTGTCAAATTTTCAT+TGG | - | chr5.4:64185078-64185097 | MS.gene80626:CDS | 35.0% |
| ! | ATGTAGTTTGACTTAAACCC+GGG | + | chr5.4:64186279-64186298 | None:intergenic | 35.0% |
| ! | TACACTTTTCCCTATGTAAC+AGG | - | chr5.4:64185471-64185490 | MS.gene80626:CDS | 35.0% |
| ! | TCTTTCTTTTCACATGGTAC+AGG | + | chr5.4:64184703-64184722 | None:intergenic | 35.0% |
| ! | TGTTCTGTTCTTTTGCAACT+TGG | + | chr5.4:64187123-64187142 | None:intergenic | 35.0% |
| !! | AGAGTGTTGTCAAATTACCT+TGG | - | chr5.4:64187036-64187055 | MS.gene80626:CDS | 35.0% |
| !! | TTCATCTGATTTGCTGCATT+TGG | + | chr5.4:64184179-64184198 | None:intergenic | 35.0% |
| !!! | TGTTTTGACTTTGTAGGATC+AGG | - | chr5.4:64184391-64184410 | MS.gene80626:CDS | 35.0% |
| AAAAGGAGTTAGCACTGCAT+TGG | - | chr5.4:64184477-64184496 | MS.gene80626:CDS | 40.0% | |
| AATTAGTCCTTCAAAGGGAG+AGG | - | chr5.4:64186945-64186964 | MS.gene80626:intron | 40.0% | |
| AGAAAAGTGGCAGAGAGAAA+TGG | - | chr5.4:64184720-64184739 | MS.gene80626:intron | 40.0% | |
| AGCATGAAACCTTGTTGCAT+TGG | + | chr5.4:64186318-64186337 | None:intergenic | 40.0% | |
| AGGATGACTTTGTAGTCGAA+CGG | + | chr5.4:64186162-64186181 | None:intergenic | 40.0% | |
| ATCAGGAGGGGATATAATGA+AGG | - | chr5.4:64184408-64184427 | MS.gene80626:CDS | 40.0% | |
| ATCATTAAACCTCAACGTCG+CGG | - | chr5.4:64187000-64187019 | MS.gene80626:CDS | 40.0% | |
| ATTGGCACCAATGGTTAACA+TGG | - | chr5.4:64186825-64186844 | MS.gene80626:intron | 40.0% | |
| CTACTACTACCTTTGACTGT+AGG | - | chr5.4:64185235-64185254 | MS.gene80626:intron | 40.0% | |
| CTGATTTCTCTTGCGAAAAG+AGG | + | chr5.4:64185575-64185594 | None:intergenic | 40.0% | |
| GAGGGGATATAATGAAGGAA+AGG | - | chr5.4:64184413-64184432 | MS.gene80626:CDS | 40.0% | |
| GCCACTAATTAGTCCTTCAA+AGG | - | chr5.4:64186939-64186958 | MS.gene80626:intron | 40.0% | |
| GTAGTACTAGTAAGGGATCT+CGG | + | chr5.4:64185219-64185238 | None:intergenic | 40.0% | |
| GTATGTTGACCAAGGAATTG+TGG | - | chr5.4:64185528-64185547 | MS.gene80626:CDS | 40.0% | |
| GTATTTGGATACCCTTCCTA+AGG | - | chr5.4:64185762-64185781 | MS.gene80626:intron | 40.0% | |
| GTGTTGTCAAATTACCTTGG+AGG | - | chr5.4:64187039-64187058 | MS.gene80626:CDS | 40.0% | |
| TAGATTTCCATTGGCACCAA+TGG | - | chr5.4:64186816-64186835 | MS.gene80626:intron | 40.0% | |
| TAGCAAGATCCAATGCAACA+AGG | - | chr5.4:64186306-64186325 | MS.gene80626:intron | 40.0% | |
| TCAGGATATGTTTGCCAAGA+AGG | + | chr5.4:64184787-64184806 | None:intergenic | 40.0% | |
| TCTAACATGTTCTGTTCTGC+AGG | - | chr5.4:64185304-64185323 | MS.gene80626:intron | 40.0% | |
| TCTTGGCAAACATATCCTGA+TGG | - | chr5.4:64184787-64184806 | MS.gene80626:intron | 40.0% | |
| TTCGACTACAAAGTCATCCT+GGG | - | chr5.4:64186162-64186181 | MS.gene80626:intron | 40.0% | |
| TTGACTTTGTAGGATCAGGA+GGG | - | chr5.4:64184395-64184414 | MS.gene80626:CDS | 40.0% | |
| TTGTAGTCATGTCAACGCAT+TGG | - | chr5.4:64184927-64184946 | MS.gene80626:CDS | 40.0% | |
| ! | ACATGGCTGCTTTCAGTATT+TGG | + | chr5.4:64185699-64185718 | None:intergenic | 40.0% |
| ! | ACTCGGATTTTCCTATAACC+AGG | - | chr5.4:64185045-64185064 | MS.gene80626:CDS | 40.0% |
| ! | AGCAATGCTGTTGATAGACA+TGG | + | chr5.4:64185716-64185735 | None:intergenic | 40.0% |
| ! | CAGCATTGCTTTAGATGACA+TGG | - | chr5.4:64185726-64185745 | MS.gene80626:intron | 40.0% |
| ! | CCCTTTGAAGGACTAATTAG+TGG | + | chr5.4:64186943-64186962 | None:intergenic | 40.0% |
| ! | CTCGGATTTTCCTATAACCA+GGG | - | chr5.4:64185046-64185065 | MS.gene80626:CDS | 40.0% |
| ! | CTTTTCGCAAGAGAAATCAG+CGG | - | chr5.4:64185575-64185594 | MS.gene80626:CDS | 40.0% |
| ! | TACCAAGAACTAGCCTACAT+TGG | + | chr5.4:64185428-64185447 | None:intergenic | 40.0% |
| ! | TGCTTGGTGAAGATATGTCA+GGG | - | chr5.4:64184449-64184468 | MS.gene80626:CDS | 40.0% |
| ! | TTCCAATGTAGGCTAGTTCT+TGG | - | chr5.4:64185423-64185442 | MS.gene80626:intron | 40.0% |
| ! | TTTGACTTTGTAGGATCAGG+AGG | - | chr5.4:64184394-64184413 | MS.gene80626:CDS | 40.0% |
| !! | AAGGGTATCCAAATACGACT+CGG | + | chr5.4:64185758-64185777 | None:intergenic | 40.0% |
| !! | ATGGATTGGCTTCTTTGTGT+TGG | - | chr5.4:64184739-64184758 | MS.gene80626:intron | 40.0% |
| !! | ATGTTAACCATTGGTGCCAA+TGG | + | chr5.4:64186826-64186845 | None:intergenic | 40.0% |
| !! | GAGTTTTGGTATGTTGACCA+AGG | - | chr5.4:64185520-64185539 | MS.gene80626:CDS | 40.0% |
| !! | TGGGATTTGTTGCAACATGT+AGG | - | chr5.4:64184646-64184665 | MS.gene80626:intron | 40.0% |
| !!! | TTCAAGAGTTTTGGAGAGCA+TGG | - | chr5.4:64186729-64186748 | MS.gene80626:CDS | 40.0% |
| ACTTTGTAGTCGAACGGCTA+GGG | + | chr5.4:64186156-64186175 | None:intergenic | 45.0% | |
| AGGTTTGCGAAGTTACTGCT+TGG | - | chr5.4:64184433-64184452 | MS.gene80626:CDS | 45.0% | |
| AGTGGCACAGGTGAATAACT+AGG | + | chr5.4:64186925-64186944 | None:intergenic | 45.0% | |
| AGTGGCAGAGAGAAATGGAT+TGG | - | chr5.4:64184725-64184744 | MS.gene80626:intron | 45.0% | |
| CAGAATGGAAGAACGTGCTT+GGG | - | chr5.4:64185968-64185987 | MS.gene80626:intron | 45.0% | |
| CTCAAGTGCAACATGCTCAT+TGG | + | chr5.4:64186065-64186084 | None:intergenic | 45.0% | |
| CTGGCGCCATACATAAATTG+CGG | + | chr5.4:64186107-64186126 | None:intergenic | 45.0% | |
| GAAGGACTAATTAGTGGCAC+AGG | + | chr5.4:64186937-64186956 | None:intergenic | 45.0% | |
| GACATAGTGCCCTTCCTAAT+AGG | + | chr5.4:64184157-64184176 | None:intergenic | 45.0% | |
| GATATGTCAGGGTCTGGAAA+AGG | - | chr5.4:64184460-64184479 | MS.gene80626:CDS | 45.0% | |
| GGACATTGTGAAGGACTTCA+TGG | - | chr5.4:64186183-64186202 | MS.gene80626:intron | 45.0% | |
| GTGAAGGACTTCATGGTTGA+TGG | - | chr5.4:64186190-64186209 | MS.gene80626:intron | 45.0% | |
| GTTCGACTACAAAGTCATCC+TGG | - | chr5.4:64186161-64186180 | MS.gene80626:intron | 45.0% | |
| TCAGAATGGAAGAACGTGCT+TGG | - | chr5.4:64185967-64185986 | MS.gene80626:intron | 45.0% | |
| TCCTGATGGTAGTAAGCTAG+AGG | - | chr5.4:64184801-64184820 | MS.gene80626:intron | 45.0% | |
| TCTTGAGTTCTCACTGAGAC+CGG | + | chr5.4:64185644-64185663 | None:intergenic | 45.0% | |
| TGACTTTGTAGGATCAGGAG+GGG | - | chr5.4:64184396-64184415 | MS.gene80626:CDS | 45.0% | |
| TTGTCGAGTTTACGTAGAGC+TGG | + | chr5.4:64185371-64185390 | None:intergenic | 45.0% | |
| ! | AATGGGTCTTGTAGTTCCAC+TGG | - | chr5.4:64184073-64184092 | MS.gene80626:CDS | 45.0% |
| ! | ACCTCTAGCTTACTACCATC+AGG | + | chr5.4:64184805-64184824 | None:intergenic | 45.0% |
| ! | AGGGTATCCAAATACGACTC+GGG | + | chr5.4:64185757-64185776 | None:intergenic | 45.0% |
| ! | CTGCTTGGTGAAGATATGTC+AGG | - | chr5.4:64184448-64184467 | MS.gene80626:CDS | 45.0% |
| ! | GTGGTTTAGAGTGAGATCTC+TGG | + | chr5.4:64186126-64186145 | None:intergenic | 45.0% |
| ! | GTTGCACTGCTATGGAGTTT+TGG | - | chr5.4:64185506-64185525 | MS.gene80626:CDS | 45.0% |
| ATCTGAGCAACACGATCCAG+TGG | + | chr5.4:64184092-64184111 | None:intergenic | 50.0% | |
| ATTGTGGCACCAGATGCAGA+TGG | - | chr5.4:64185544-64185563 | MS.gene80626:CDS | 50.0% | |
| CAAGAGAAATCAGCGGCAAG+AGG | - | chr5.4:64185582-64185601 | MS.gene80626:CDS | 50.0% | |
| CAGCAGGTAAATTGAGTCCC+TGG | + | chr5.4:64185066-64185085 | None:intergenic | 50.0% | |
| CTGCTTTCATCTCTCCTCCA+AGG | + | chr5.4:64187056-64187075 | None:intergenic | 50.0% | |
| GAAGTCCTTCACAATGTCCC+AGG | + | chr5.4:64186182-64186201 | None:intergenic | 50.0% | |
| GACTTTGTAGTCGAACGGCT+AGG | + | chr5.4:64186157-64186176 | None:intergenic | 50.0% | |
| GCAAGCACTCTTGAGAGAAC+TGG | + | chr5.4:64186024-64186043 | None:intergenic | 50.0% | |
| GCACTCTTGAGAGAACTGGT+CGG | + | chr5.4:64186020-64186039 | None:intergenic | 50.0% | |
| GGAAGTTCCCGAGTCGTATT+TGG | - | chr5.4:64185747-64185766 | MS.gene80626:intron | 50.0% | |
| GGAGTTACCTCTCCCTTTGA+AGG | + | chr5.4:64186955-64186974 | None:intergenic | 50.0% | |
| GGTGAAGATATGTCAGGGTC+TGG | - | chr5.4:64184454-64184473 | MS.gene80626:CDS | 50.0% | |
| GTCATCCTGGGACATTGTGA+AGG | - | chr5.4:64186174-64186193 | MS.gene80626:intron | 50.0% | |
| TTCATTGAAGCAGCGCTTCC+CGG | - | chr5.4:64186258-64186277 | MS.gene80626:intron | 50.0% | |
| ! | AAACCTCAACGTCGCGGTTT+TGG | - | chr5.4:64187006-64187025 | MS.gene80626:CDS | 50.0% |
| ! | CACGGATTGCCTACAGTCAA+AGG | + | chr5.4:64185247-64185266 | None:intergenic | 50.0% |
| !! | CATCTGGTGCCACAATTCCT+TGG | + | chr5.4:64185540-64185559 | None:intergenic | 50.0% |
| ACACCAAAACCGCGACGTTG+AGG | + | chr5.4:64187012-64187031 | None:intergenic | 55.0% | |
| ATCAGCGGCAAGAGGAGAAG+TGG | - | chr5.4:64185590-64185609 | MS.gene80626:CDS | 55.0% | |
| GAGGCTGATCCATCTGCATC+TGG | + | chr5.4:64185556-64185575 | None:intergenic | 55.0% | |
| TCATTGAAGCAGCGCTTCCC+GGG | - | chr5.4:64186259-64186278 | MS.gene80626:intron | 55.0% | |
| AGCGGCAAGAGGAGAAGTGG+TGG | - | chr5.4:64185593-64185612 | MS.gene80626:CDS | 60.0% | |
| GAACGGCTAGGGTAGAGTGG+TGG | + | chr5.4:64186145-64186164 | None:intergenic | 60.0% | |
| GAGTTCTCACTGAGACCGGC+AGG | + | chr5.4:64185640-64185659 | None:intergenic | 60.0% | |
| GTCGAACGGCTAGGGTAGAG+TGG | + | chr5.4:64186148-64186167 | None:intergenic | 60.0% | |
| TTCTCACTGAGACCGGCAGG+AGG | + | chr5.4:64185637-64185656 | None:intergenic | 60.0% | |
| ! | CAGGAGGCACACGGGGTACT+GGG | + | chr5.4:64185621-64185640 | None:intergenic | 65.0% |
| ! | TGAGACCGGCAGGAGGCACA+CGG | + | chr5.4:64185630-64185649 | None:intergenic | 65.0% |
| GTACCCCGTGTGCCTCCTGC+CGG | - | chr5.4:64185622-64185641 | MS.gene80626:CDS | 70.0% | |
| ! | AGACCGGCAGGAGGCACACG+GGG | + | chr5.4:64185628-64185647 | None:intergenic | 70.0% |
| ! | GAGACCGGCAGGAGGCACAC+GGG | + | chr5.4:64185629-64185648 | None:intergenic | 70.0% |
| ! | GCAGGAGGCACACGGGGTAC+TGG | + | chr5.4:64185622-64185641 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 64184028 | 64187191 | 64184028 | ID=MS.gene80626 |
| chr5.4 | mRNA | 64184028 | 64187191 | 64184028 | ID=MS.gene80626.t1;Parent=MS.gene80626 |
| chr5.4 | exon | 64186954 | 64187191 | 64186954 | ID=MS.gene80626.t1.exon1;Parent=MS.gene80626.t1 |
| chr5.4 | CDS | 64186954 | 64187191 | 64186954 | ID=cds.MS.gene80626.t1;Parent=MS.gene80626.t1 |
| chr5.4 | exon | 64186690 | 64186812 | 64186690 | ID=MS.gene80626.t1.exon2;Parent=MS.gene80626.t1 |
| chr5.4 | CDS | 64186690 | 64186812 | 64186690 | ID=cds.MS.gene80626.t1;Parent=MS.gene80626.t1 |
| chr5.4 | exon | 64186397 | 64186551 | 64186397 | ID=MS.gene80626.t1.exon3;Parent=MS.gene80626.t1 |
| chr5.4 | CDS | 64186397 | 64186551 | 64186397 | ID=cds.MS.gene80626.t1;Parent=MS.gene80626.t1 |
| chr5.4 | exon | 64185819 | 64185893 | 64185819 | ID=MS.gene80626.t1.exon4;Parent=MS.gene80626.t1 |
| chr5.4 | CDS | 64185819 | 64185893 | 64185819 | ID=cds.MS.gene80626.t1;Parent=MS.gene80626.t1 |
| chr5.4 | exon | 64185436 | 64185726 | 64185436 | ID=MS.gene80626.t1.exon5;Parent=MS.gene80626.t1 |
| chr5.4 | CDS | 64185436 | 64185726 | 64185436 | ID=cds.MS.gene80626.t1;Parent=MS.gene80626.t1 |
| chr5.4 | exon | 64184892 | 64185248 | 64184892 | ID=MS.gene80626.t1.exon6;Parent=MS.gene80626.t1 |
| chr5.4 | CDS | 64184892 | 64185248 | 64184892 | ID=cds.MS.gene80626.t1;Parent=MS.gene80626.t1 |
| chr5.4 | exon | 64184028 | 64184519 | 64184028 | ID=MS.gene80626.t1.exon7;Parent=MS.gene80626.t1 |
| chr5.4 | CDS | 64184028 | 64184519 | 64184028 | ID=cds.MS.gene80626.t1;Parent=MS.gene80626.t1 |
| Gene Sequence |
| Protein sequence |
