AlfalfaGEDB | MS.gene80911

M. sativa cultivar XinJiangDaYe / MS.gene80911

KEGG: -
GO: -
PFAM: PF05553.14

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80911.t1	KEH21585.1	90.9	920	79	3	1	916	1	919	0.00E+00	1260.7

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80911.t1	A0A072U6U7	90.9	920	79	3	1	916	1	919	0.0e+00	1260.7

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049341	MS.gene80911	0.804223	2.39E-49	-1.69E-46
MS.gene049887	MS.gene80911	0.866222	3.34E-65	-1.69E-46
MS.gene050838	MS.gene80911	0.829311	5.53E-55	-1.69E-46
MS.gene051102	MS.gene80911	0.854219	1.42E-61	-1.69E-46
MS.gene051885	MS.gene80911	0.815293	9.96E-52	-1.69E-46
MS.gene052133	MS.gene80911	0.810686	1.02E-50	-1.69E-46
MS.gene052397	MS.gene80911	0.8315	1.61E-55	-1.69E-46
MS.gene052665	MS.gene80911	0.823814	1.13E-53	-1.69E-46
MS.gene052732	MS.gene80911	0.828769	7.48E-55	-1.69E-46
MS.gene053144	MS.gene80911	0.803424	3.51E-49	-1.69E-46

Showing 1 to 10 of 22 entries

Previous1 2 3Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80911.t1	MTR_7g007880	94.457	920	46	3	1	916	1	919	0.0	1712
MS.gene80911.t1	MTR_4g100530	31.752	274	130	7	27	293	33	256	4.50e-27	116

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80911.t1	AT3G60380	35.211	284	122	13	47	320	51	282	1.39e-28	123
MS.gene80911.t1	AT4G16790	46.018	113	39	4	17	110	9	118	1.01e-17	87.8

Showing 1 to 2 of 2 entries

Previous1Next

Find 188 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGAAGAAGAATACATAC+CGG	0.666042	7.3:-89734202	None:intergenic
AAAGGTTGTTGTAAAGAAGC+TGG	0.475609	7.3:+89735532	MS.gene80911:CDS
AAAGTTTATGGCAATGATAA+TGG	0.342619	7.3:+89734084	MS.gene80911:CDS
AAATCATGATGAGGTTTCGT+TGG	0.512566	7.3:+89735655	MS.gene80911:CDS
AAATGGCTGCAATGAAGTTT+CGG	0.412708	7.3:-89735261	None:intergenic
AAATTCATATCTTCAGAAAA+AGG	0.344657	7.3:-89734894	None:intergenic
AACAAAGAGTCGGTGATGCT+TGG	0.482803	7.3:+89735371	MS.gene80911:CDS
AACAAGCTTGAGAGCCTCCA+GGG	0.587449	7.3:+89735734	MS.gene80911:CDS
AACAGAAGAATGGGTACTAA+AGG	0.456756	7.3:+89734513	MS.gene80911:CDS
AACCCATACTCACCAAGTTA+TGG	0.407274	7.3:+89733347	MS.gene80911:CDS

Showing 1 to 10 of 188 entries

Previous1 2 3 4 5…19Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACGAAGAAGAATACATAC+CGG	-	chr7.3:89734205-89734224	None:intergenic	30.0%
AACTTGAATCACGTATTTCA+CGG	+	chr7.3:89735045-89735064	MS.gene80911:CDS	30.0%
AAGGATTCAAAGAAGAGATT+CGG	+	chr7.3:89734458-89734477	MS.gene80911:CDS	30.0%
AATGAAACGATTGAACTTAG+AGG	+	chr7.3:89734963-89734982	MS.gene80911:CDS	30.0%
AGAATAAGATGATGCATTGT+TGG	+	chr7.3:89733554-89733573	MS.gene80911:CDS	30.0%
AGATATGAATTTCCATGAGA+TGG	+	chr7.3:89734905-89734924	MS.gene80911:CDS	30.0%
ATGAAACGATTGAACTTAGA+GGG	+	chr7.3:89734964-89734983	MS.gene80911:CDS	30.0%
ATGAAGAGTAATCTGAATGA+TGG	+	chr7.3:89735305-89735324	MS.gene80911:CDS	30.0%
CAAATTAGGCTTCAGAAAAT+TGG	+	chr7.3:89735857-89735876	MS.gene80911:CDS	30.0%
CAACCAAAACCAATCAAAAA+AGG	+	chr7.3:89733226-89733245	MS.gene80911:CDS	30.0%

Showing 1 to 10 of 224 entries

Previous1 2 3 4 5…23Next

Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	89733184	89735934	89733184	ID=MS.gene80911
chr7.3	mRNA	89733184	89735934	89733184	ID=MS.gene80911.t1;Parent=MS.gene80911
chr7.3	exon	89733184	89735934	89733184	ID=MS.gene80911.t1.exon1;Parent=MS.gene80911.t1
chr7.3	CDS	89733184	89735934	89733184	ID=cds.MS.gene80911.t1;Parent=MS.gene80911.t1

Gene Sequence

>MS.gene80911

ATGGCGGATCCAATCCCAATCACAAAACCCCATTTGCGGATCCAACCAAAACCAATCAAAAAAGGTAACTCTTGTTCAGATTTCATCATAAAGTTTCTATTTTTAGCAGTTTTCATCATTGTTCTTCCACTTTTTCCTTCACAAGCTCCTGAATTTTTGAACCAACCCATACTCACCAAGTTATGGGAGCTTCTTCACCTTCTTTTCATTGGCATTGTTGTTGCTTATGGTCTTTTTAGTAGAAGAAATGCTGAATTAGAAACTAATGATAGTGATAATAATAATAGTGCTAATTATGTTTCTAAGTTTTTTCCTGCTTCAACTATTTTTGGTGATGAATGTGAAATTGAGAATTCATGTGGGTTTGATGAGAATAAGATGATGCATTGTTGGAATGATGGGTCTAATGAGGGTGGTAATAGTAGTACTGTTGGTGTTTTTGATGAACAGTACAATACCGAAAAATTGTCGAATTCTGATGATAATTTTGGTTATTCAGTTGGTTTTGATGGTGGAAATGATGGAACTAATGTGATTCAATCTTGGAATTCTGAGTATTTTTATAGTGAGTCTGTTGTTGTTGCTCAACCTTACTTTGGTAATGTTGAATGTGGCGAGGTTGTTGGTCATAAACCTCTCGGATTACCGGTTCGAAGTTTGAAATTGGTTGAAAGAGAAGTGGATGGTGTTGGTAAATATTTCAATGAAAATGGAAGTGATTCGAGTTTAGGTTCGAGGCGTTCTTCTAAGAGGTTGGATGTGAGTGAAGATAGGGAATTTGGGGATATGGATCCTTCGAATTTGGAGAAACAATTTAATGATGCTGCTGTTGATGGTGGTGGAATTGCTTCTCCTTCGCCTATTGACTGGAATTCGAGGTTTGGAAGGATGGAAAGGGAGAAAGTTTATGGCAATGATAATGGTTCTTCGCAGTTTAGGCCTCTTTCGGTTGATGAGACTAAGTTTGAAGGACTTGGCTCGTACTCTTCACAGTCTACAACGTCGTTCTCTTCTCACGCCGGTATGTATTCTTCTTCGTTTGATTCGATTGCATCTGATAATATCAATATGTATTCCTCTTCGTTTGATTCGATTGCATCGGATAATATCAATACGGGTTTTCAAGACGAAGAAATGAGACAACAGAAGGAGGATTCCTATGTGCCTGCTTTGGAAAAGAAGAATTTTCGAGACAACAGTGTGAGACGGAGGAAGACTTCTTCGTTTGTGCCTGCTCGAGAAAATATGATTTTCGAAGAGGAAGGGATGGAACAAAGGATTCAAAGAAGAGATTCGGGGAAGAAGGTATCCGAGGGCCGTTCTTTAAGAAACAGAAGAATGGGTACTAAAGGGAAACATGCTGCACATTTAAGGCCAATGTCTGTTGATGAAACTCAATTTGTCGAATCGCTTAGTTCACAGTCTTTCCAGTCGACAGGATCTTTTTCTGCCAACGCGAGAATGTATTCTTCGATGGACTCGATTTCTTCAGACACTATAGACTTCCAAGAGGAAGTTGTGGAACAAAAAGAGACTTCCCCTTTGCATACTTCGGAAAATATGAATTTCCAGGAGGAAGATATGCATACTTCAGAAAATATGAATTTCCAAGAGGAAGATATGGAGCACAATAACACTTCCTATTTGCATGCTTCAGAAAATGTCGGTTTCCAAGTGGAAGATTTGGGACAAAAGAAGACTTCATTTGTGCCTTTTTCTGAAGATATGAATTTCCATGAGATGGATTTGGCGACGAAGATTTCTCAGGTGTCTTCAGGAAATGAAACGATTGAACTTAGAGGGAAATATGCTGCTGTTTCTCATCCTTCGCATTTCAGGCCAATATCTGTTGATGAAACTCAACTTGAATCACGTATTTCACGGTCTTTGCAGTCTGTGGGATCTTTCTCATCTCACACGAGTAACATGAGTTTGCGTTCTTCCGTAGATTCTGTTTCATCAGAAAATATGAATCCGCTGCAGGAAGGTTTAGGGGAAAAGAAGAGCTTGCATGGATCTTCTTCCTCTTCTTCTTCGTCTTCTTCAAGTTCACCTTCATCTTCGGCTAGAAGGAACGCCGAAACTTCATTGCAGCCATTTGTTAGCTTGCTACACGATGACATGAAGAGTAATCTGAATGATGGCTTCAAGGGTAAAAGTGGGACCGCAGGCGAGGATCCACCTGGGAACAAAGAGTCGGTGATGCTTGGTTTGCATTCGGACTCAGACAGGCCAACAAGTCTAGCAAAAGCTCTATCAAGGGGGAAATCAGTTAGAACAAGAAGAGCCAGTGGATTGCCTTCAGGGACGATGAAAGTTGATGAAACGTCTAGCAAGCAAGCCGATGAAAAGGTTGTTGTAAAGAAGCTGGATAATGTTGATACAGCAACGAGAAAAGATAAAATGAAAAGTAGAGAATCAGATCTTCTATTCAAAGGGATCAGTAAGAAAACTCTTGATTGCTATTTTCCAAATCATGATGAGGTTTCGTTGGCGAGTCATCGTAAGAGAGATAAACCAGAACCATCAAAGAGTGTGGAAGACTTGGATAACAAGCTTGAGAGCCTCCAGGGTAGCTCAGATGAAGATGTGGTGTCTGAATATGTCAATGATTCAGGACTGGATTCTGAGGTGGATAAGAAAGCTAGTGAATTTATCGCCAGGTTCAAAGCTCAAATTAGGCTTCAGAAAATTGGATCAATTGAAAGATCAAAAGGTCAAAAAATCTTTGGTGACAACAATGTTAGGTGA

Protein sequence

>MS.gene80911.t1

MADPIPITKPHLRIQPKPIKKGNSCSDFIIKFLFLAVFIIVLPLFPSQAPEFLNQPILTKLWELLHLLFIGIVVAYGLFSRRNAELETNDSDNNNSANYVSKFFPASTIFGDECEIENSCGFDENKMMHCWNDGSNEGGNSSTVGVFDEQYNTEKLSNSDDNFGYSVGFDGGNDGTNVIQSWNSEYFYSESVVVAQPYFGNVECGEVVGHKPLGLPVRSLKLVEREVDGVGKYFNENGSDSSLGSRRSSKRLDVSEDREFGDMDPSNLEKQFNDAAVDGGGIASPSPIDWNSRFGRMEREKVYGNDNGSSQFRPLSVDETKFEGLGSYSSQSTTSFSSHAGMYSSSFDSIASDNINMYSSSFDSIASDNINTGFQDEEMRQQKEDSYVPALEKKNFRDNSVRRRKTSSFVPARENMIFEEEGMEQRIQRRDSGKKVSEGRSLRNRRMGTKGKHAAHLRPMSVDETQFVESLSSQSFQSTGSFSANARMYSSMDSISSDTIDFQEEVVEQKETSPLHTSENMNFQEEDMHTSENMNFQEEDMEHNNTSYLHASENVGFQVEDLGQKKTSFVPFSEDMNFHEMDLATKISQVSSGNETIELRGKYAAVSHPSHFRPISVDETQLESRISRSLQSVGSFSSHTSNMSLRSSVDSVSSENMNPLQEGLGEKKSLHGSSSSSSSSSSSSPSSSARRNAETSLQPFVSLLHDDMKSNLNDGFKGKSGTAGEDPPGNKESVMLGLHSDSDRPTSLAKALSRGKSVRTRRASGLPSGTMKVDETSSKQADEKVVVKKLDNVDTATRKDKMKSRESDLLFKGISKKTLDCYFPNHDEVSLASHRKRDKPEPSKSVEDLDNKLESLQGSSDEDVVSEYVNDSGLDSEVDKKASEFIARFKAQIRLQKIGSIERSKGQKIFGDNNVR