Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81199.t1 | RHN52029.1 | 95.1 | 142 | 7 | 0 | 1 | 142 | 100 | 241 | 6.90E-68 | 266.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81199.t1 | Q93WL3 | 60.6 | 142 | 54 | 2 | 1 | 141 | 96 | 236 | 5.0e-43 | 175.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81199.t1 | A0A396HFE0 | 95.1 | 142 | 7 | 0 | 1 | 142 | 100 | 241 | 5.0e-68 | 266.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene81199 | 0.810804 | 9.60E-51 | -1.69E-46 |
| MS.gene049284 | MS.gene81199 | 0.813843 | 2.08E-51 | -1.69E-46 |
| MS.gene050397 | MS.gene81199 | 0.813122 | 3.00E-51 | -1.69E-46 |
| MS.gene050464 | MS.gene81199 | 0.827237 | 1.75E-54 | -1.69E-46 |
| MS.gene050529 | MS.gene81199 | 0.843811 | 1.11E-58 | -1.69E-46 |
| MS.gene050670 | MS.gene81199 | 0.817092 | 3.95E-52 | -1.69E-46 |
| MS.gene05105 | MS.gene81199 | 0.820114 | 8.14E-53 | -1.69E-46 |
| MS.gene051666 | MS.gene81199 | 0.827035 | 1.95E-54 | -1.69E-46 |
| MS.gene052078 | MS.gene81199 | 0.810128 | 1.34E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene81199 | 0.820595 | 6.31E-53 | -1.69E-46 |
| MS.gene052310 | MS.gene81199 | 0.805763 | 1.14E-49 | -1.69E-46 |
| MS.gene052481 | MS.gene81199 | 0.804705 | 1.90E-49 | -1.69E-46 |
| MS.gene053103 | MS.gene81199 | 0.816386 | 5.68E-52 | -1.69E-46 |
| MS.gene053104 | MS.gene81199 | 0.800849 | 1.19E-48 | -1.69E-46 |
| MS.gene055116 | MS.gene81199 | 0.801902 | 7.23E-49 | -1.69E-46 |
| MS.gene056659 | MS.gene81199 | 0.803059 | 4.18E-49 | -1.69E-46 |
| MS.gene056796 | MS.gene81199 | 0.83635 | 9.85E-57 | -1.69E-46 |
| MS.gene05702 | MS.gene81199 | 0.806697 | 7.25E-50 | -1.69E-46 |
| MS.gene058082 | MS.gene81199 | 0.82752 | 1.50E-54 | -1.69E-46 |
| MS.gene058158 | MS.gene81199 | -0.817575 | 3.07E-52 | -1.69E-46 |
| MS.gene058293 | MS.gene81199 | 0.800598 | 1.34E-48 | -1.69E-46 |
| MS.gene058660 | MS.gene81199 | 0.831949 | 1.25E-55 | -1.69E-46 |
| MS.gene059294 | MS.gene81199 | 0.807261 | 5.51E-50 | -1.69E-46 |
| MS.gene059536 | MS.gene81199 | 0.819368 | 1.21E-52 | -1.69E-46 |
| MS.gene059688 | MS.gene81199 | 0.802927 | 4.45E-49 | -1.69E-46 |
| MS.gene059692 | MS.gene81199 | 0.802144 | 6.45E-49 | -1.69E-46 |
| MS.gene059695 | MS.gene81199 | 0.805642 | 1.21E-49 | -1.69E-46 |
| MS.gene059960 | MS.gene81199 | 0.809898 | 1.51E-50 | -1.69E-46 |
| MS.gene06090 | MS.gene81199 | 0.800366 | 1.49E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81199.t1 | MTR_6g461650 | 95.652 | 115 | 5 | 0 | 28 | 142 | 12 | 126 | 1.62e-75 | 221 |
| MS.gene81199.t1 | MTR_5g011550 | 53.968 | 126 | 57 | 1 | 1 | 125 | 96 | 221 | 2.25e-42 | 140 |
| MS.gene81199.t1 | MTR_5g011550 | 53.488 | 86 | 40 | 0 | 1 | 86 | 96 | 181 | 4.20e-26 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81199.t1 | AT4G25370 | 60.563 | 142 | 54 | 2 | 1 | 141 | 96 | 236 | 3.78e-57 | 178 |
| MS.gene81199.t1 | AT4G12060 | 59.124 | 137 | 54 | 2 | 1 | 135 | 104 | 240 | 3.99e-47 | 152 |
Find 34 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACGTGACTCATTTACTTCT+TGG | 0.193512 | 6.1:-56051981 | MS.gene81199:CDS |
| CTCATTTACTTCTTGGAATT+TGG | 0.207345 | 6.1:-56051974 | MS.gene81199:CDS |
| TGCTGTTTCAGCAATTTCTT+TGG | 0.256036 | 6.1:+56051890 | None:intergenic |
| AGAGCTTCGGTTCCTACTTT+AGG | 0.268153 | 6.1:+56054530 | None:intergenic |
| CGAAAGGTCTTGTCTGCTTT+AGG | 0.302687 | 6.1:-56051930 | MS.gene81199:CDS |
| GCAAAATTCTTAAGAGCTAA+TGG | 0.310722 | 6.1:-56053243 | MS.gene81199:CDS |
| GGCATATGCAATGGCGGAGT+TGG | 0.395307 | 6.1:-56054573 | None:intergenic |
| AGGCTAGTGGTGATATTGAT+TGG | 0.457256 | 6.1:-56051557 | MS.gene81199:CDS |
| GAACAAACATTAGAGATACT+TGG | 0.494086 | 6.1:-56053198 | MS.gene81199:CDS |
| CACTTCATAAAGCCCTCGAT+TGG | 0.501232 | 6.1:-56053125 | MS.gene81199:CDS |
| AATCCCCATGAGAAGAGCTT+CGG | 0.510732 | 6.1:+56054517 | None:intergenic |
| GGAACCGAAGCTCTTCTCAT+GGG | 0.514916 | 6.1:-56054521 | MS.gene81199:CDS |
| TGAAGTGGTTCAGTCAAAGA+AGG | 0.516251 | 6.1:+56053141 | None:intergenic |
| AAACTTAAGTATCCTAAAGT+AGG | 0.518801 | 6.1:-56054542 | MS.gene81199:CDS |
| CAAAGAAGGTACCACAGGGC+TGG | 0.521979 | 6.1:+56053155 | None:intergenic |
| AATTTGGTCACAAGAAGAAT+CGG | 0.524470 | 6.1:-56051958 | MS.gene81199:CDS |
| CTTAATGAGACATCAAAGTC+AGG | 0.528570 | 6.1:-56053099 | MS.gene81199:intron |
| ACTTCATAAAGCCCTCGATT+GGG | 0.536661 | 6.1:-56053124 | MS.gene81199:CDS |
| AACAAACATTAGAGATACTT+GGG | 0.539478 | 6.1:-56053197 | MS.gene81199:CDS |
| TGATATAAAATGTAGGTGAA+GGG | 0.544707 | 6.1:-56052010 | MS.gene81199:intron |
| TTATGTTTCTTGTAGGCTAG+TGG | 0.544994 | 6.1:-56051570 | MS.gene81199:intron |
| CTCATTAAGTGCCCAATCGA+GGG | 0.546784 | 6.1:+56053113 | None:intergenic |
| TCAGTCAAAGAAGGTACCAC+AGG | 0.550965 | 6.1:+56053150 | None:intergenic |
| GATATAAAATGTAGGTGAAG+GGG | 0.556811 | 6.1:-56052009 | MS.gene81199:intron |
| AGAAGAATCGGCAGGTCGAA+AGG | 0.557152 | 6.1:-56051946 | MS.gene81199:CDS |
| CAATGGCGGAGTTGGAAACA+AGG | 0.558511 | 6.1:-56054565 | MS.gene81199:CDS |
| CAATCGAGGGCTTTATGAAG+TGG | 0.559203 | 6.1:+56053126 | None:intergenic |
| AGGAACCGAAGCTCTTCTCA+TGG | 0.574875 | 6.1:-56054522 | MS.gene81199:CDS |
| TGGTCACAAGAAGAATCGGC+AGG | 0.599189 | 6.1:-56051954 | MS.gene81199:CDS |
| AGATACTTGGGAAATCTGAC+TGG | 0.600934 | 6.1:-56053185 | MS.gene81199:CDS |
| TCTCATTAAGTGCCCAATCG+AGG | 0.607236 | 6.1:+56053112 | None:intergenic |
| GAACCGAAGCTCTTCTCATG+GGG | 0.645463 | 6.1:-56054520 | MS.gene81199:CDS |
| CAGTCAAAGAAGGTACCACA+GGG | 0.673070 | 6.1:+56053151 | None:intergenic |
| CTGGTACTACTCCAGCCCTG+TGG | 0.699262 | 6.1:-56053166 | MS.gene81199:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATTATTAAATCTTAAAAT+TGG | - | chr6.1:56052585-56052604 | MS.gene81199:intron | 10.0% |
| !! | TATAAACACATAAATTTAAT+AGG | - | chr6.1:56051937-56051956 | MS.gene81199:CDS | 10.0% |
| !! | TATTGTAATGTTTAAAAAAT+CGG | + | chr6.1:56054463-56054482 | None:intergenic | 10.0% |
| !!! | TACTATATTTTAAACTTAAT+AGG | + | chr6.1:56053359-56053378 | None:intergenic | 10.0% |
| !!! | TTATTTTGACAAAAAAAAAA+GGG | + | chr6.1:56053445-56053464 | None:intergenic | 10.0% |
| !! | GTTATTATGATATAAAATGT+AGG | - | chr6.1:56054082-56054101 | MS.gene81199:intron | 15.0% |
| !! | TAACTTAAGTATTACAAAAA+AGG | + | chr6.1:56054066-56054085 | None:intergenic | 15.0% |
| !!! | CAATAATACAATGTTTTATT+TGG | - | chr6.1:56054252-56054271 | MS.gene81199:intron | 15.0% |
| !!! | GTTATTTTGACAAAAAAAAA+AGG | + | chr6.1:56053446-56053465 | None:intergenic | 15.0% |
| !!! | TATTTGTTTTCATTGAAAAA+TGG | - | chr6.1:56052013-56052032 | MS.gene81199:intron | 15.0% |
| !! | AAATGTACTAAATAGACAAT+AGG | - | chr6.1:56053852-56053871 | MS.gene81199:intron | 20.0% |
| !! | ACATAACGTATCATATATTT+AGG | - | chr6.1:56053394-56053413 | MS.gene81199:intron | 20.0% |
| !! | AGTAGCTTATTATATAACTT+CGG | - | chr6.1:56052085-56052104 | MS.gene81199:intron | 20.0% |
| !! | ATTTAATAGGTATAAGCATT+TGG | - | chr6.1:56051950-56051969 | MS.gene81199:CDS | 20.0% |
| !! | TAATTAAAACATGAACACAA+TGG | + | chr6.1:56053146-56053165 | None:intergenic | 20.0% |
| !! | TGCATTATTTATTTATGATC+TGG | + | chr6.1:56054303-56054322 | None:intergenic | 20.0% |
| !! | TTAGAGAATAATTGAACAAT+AGG | + | chr6.1:56054008-56054027 | None:intergenic | 20.0% |
| !! | TTTAATAGGTATAAGCATTT+GGG | - | chr6.1:56051951-56051970 | MS.gene81199:CDS | 20.0% |
| !!! | AATGTTTTATTTGGTTTCAT+TGG | - | chr6.1:56054261-56054280 | MS.gene81199:intron | 20.0% |
| !!! | AGTAATGATGTTTAAAATCA+TGG | - | chr6.1:56053286-56053305 | MS.gene81199:intron | 20.0% |
| !!! | CAAAGCACTAAAATATATTT+TGG | + | chr6.1:56052328-56052347 | None:intergenic | 20.0% |
| ! | AAAAAAAAGGGACAACAATT+TGG | + | chr6.1:56053433-56053452 | None:intergenic | 25.0% |
| ! | AAACTTAAGTATCCTAAAGT+AGG | - | chr6.1:56051557-56051576 | MS.gene81199:CDS | 25.0% |
| ! | AACAAACATTAGAGATACTT+GGG | - | chr6.1:56052902-56052921 | MS.gene81199:intron | 25.0% |
| ! | AATGGCACAAAATTTGAAAA+TGG | + | chr6.1:56053128-56053147 | None:intergenic | 25.0% |
| ! | ACCTCAATGACTATAAAATA+TGG | - | chr6.1:56054505-56054524 | MS.gene81199:intron | 25.0% |
| ! | AGAATCAAATATTCAAACCT+GGG | + | chr6.1:56052698-56052717 | None:intergenic | 25.0% |
| ! | AGGTTTGAATATTTGATTCT+AGG | - | chr6.1:56052698-56052717 | MS.gene81199:intron | 25.0% |
| ! | ATAACTTCGGAATAGATTAT+GGG | - | chr6.1:56052098-56052117 | MS.gene81199:intron | 25.0% |
| ! | ATATGGTTTATGTTTCTTGT+AGG | - | chr6.1:56054522-56054541 | MS.gene81199:CDS | 25.0% |
| ! | ATCAAAATAACACAACCAAA+AGG | + | chr6.1:56052246-56052265 | None:intergenic | 25.0% |
| ! | ATGATATAAAATGTAGGTGA+AGG | - | chr6.1:56054088-56054107 | MS.gene81199:intron | 25.0% |
| ! | ATTATAATAGATAGTGAGCT+AGG | - | chr6.1:56052668-56052687 | MS.gene81199:intron | 25.0% |
| ! | TAAGCTACTCAAATAACTAA+TGG | + | chr6.1:56052074-56052093 | None:intergenic | 25.0% |
| ! | TAGAATCAAATATTCAAACC+TGG | + | chr6.1:56052699-56052718 | None:intergenic | 25.0% |
| ! | TATAACTTCGGAATAGATTA+TGG | - | chr6.1:56052097-56052116 | MS.gene81199:intron | 25.0% |
| ! | TGATATAAAATGTAGGTGAA+GGG | - | chr6.1:56054089-56054108 | MS.gene81199:intron | 25.0% |
| ! | TTAAACCATTATGCAATAAG+TGG | - | chr6.1:56051885-56051904 | MS.gene81199:intron | 25.0% |
| !! | AAAGTTTAAAGTACTAAAGC+TGG | + | chr6.1:56053682-56053701 | None:intergenic | 25.0% |
| !! | ACCATATTTTATAGTCATTG+AGG | + | chr6.1:56054509-56054528 | None:intergenic | 25.0% |
| !! | TGTGTAAAGAGATTTTATAC+TGG | - | chr6.1:56051843-56051862 | MS.gene81199:intron | 25.0% |
| !!! | CATCAAACATGATTTTTTTC+AGG | + | chr6.1:56053266-56053285 | None:intergenic | 25.0% |
| !!! | GGCATGATTTTAAAAAACTT+TGG | + | chr6.1:56052746-56052765 | None:intergenic | 25.0% |
| AATCTTTCTACATCCATTCT+TGG | + | chr6.1:56052367-56052386 | None:intergenic | 30.0% | |
| AATGAATCTAGCAGATCAAT+TGG | + | chr6.1:56053085-56053104 | None:intergenic | 30.0% | |
| AATTTGGTCACAAGAAGAAT+CGG | - | chr6.1:56054141-56054160 | MS.gene81199:intron | 30.0% | |
| ATGAATCTAGCAGATCAATT+GGG | + | chr6.1:56053084-56053103 | None:intergenic | 30.0% | |
| CCAAATAAATGGAAGAATCT+TGG | + | chr6.1:56052767-56052786 | None:intergenic | 30.0% | |
| CCAAGATTCTTCCATTTATT+TGG | - | chr6.1:56052764-56052783 | MS.gene81199:intron | 30.0% | |
| CTCATTTACTTCTTGGAATT+TGG | - | chr6.1:56054125-56054144 | MS.gene81199:intron | 30.0% | |
| CTTATAATAAATGATGCCAG+TGG | + | chr6.1:56052278-56052297 | None:intergenic | 30.0% | |
| GAACAAACATTAGAGATACT+TGG | - | chr6.1:56052901-56052920 | MS.gene81199:intron | 30.0% | |
| GACAAATTTCAACAACAGTT+TGG | - | chr6.1:56053187-56053206 | MS.gene81199:CDS | 30.0% | |
| GATAACCACTTATTGCATAA+TGG | + | chr6.1:56051893-56051912 | None:intergenic | 30.0% | |
| GATACGTTATGTTAAGTAGA+TGG | + | chr6.1:56053386-56053405 | None:intergenic | 30.0% | |
| GATATAAAATGTAGGTGAAG+GGG | - | chr6.1:56054090-56054109 | MS.gene81199:intron | 30.0% | |
| GATTCTTCCATTTATTTGGA+AGG | - | chr6.1:56052768-56052787 | MS.gene81199:intron | 30.0% | |
| GCAAAATTCTTAAGAGCTAA+TGG | - | chr6.1:56052856-56052875 | MS.gene81199:intron | 30.0% | |
| TATAAGCATTTGGGTACATA+TGG | - | chr6.1:56051960-56051979 | MS.gene81199:CDS | 30.0% | |
| TCATTGGAAATGTATATCTC+AGG | - | chr6.1:56053787-56053806 | MS.gene81199:intron | 30.0% | |
| TGTACTAAATAGACAATAGG+AGG | - | chr6.1:56053855-56053874 | MS.gene81199:intron | 30.0% | |
| TGTGTTCAATGGATAACTAA+TGG | - | chr6.1:56053314-56053333 | MS.gene81199:intron | 30.0% | |
| TTATAAGTTCGTTTCGAATC+CGG | - | chr6.1:56052291-56052310 | MS.gene81199:intron | 30.0% | |
| TTCCATTTATTTGGAAGGAA+GGG | - | chr6.1:56052773-56052792 | MS.gene81199:intron | 30.0% | |
| TTGAAAAATGGAACTTGAGA+TGG | - | chr6.1:56052025-56052044 | MS.gene81199:intron | 30.0% | |
| TTGTATGTAAGAACCAAGAA+TGG | - | chr6.1:56052351-56052370 | MS.gene81199:intron | 30.0% | |
| TTGTTCAAGTATGACATGAT+TGG | + | chr6.1:56051804-56051823 | None:intergenic | 30.0% | |
| TTTGTTCATTCCTTCCATAT+GGG | - | chr6.1:56052488-56052507 | MS.gene81199:intron | 30.0% | |
| ! | AAAGAGATTTTATACTGGCA+GGG | - | chr6.1:56051848-56051867 | MS.gene81199:intron | 30.0% |
| ! | CAAAACCAATGTGATTTTGA+GGG | + | chr6.1:56053965-56053984 | None:intergenic | 30.0% |
| ! | CAGTTTCTAGAAAAAATCAC+AGG | + | chr6.1:56052393-56052412 | None:intergenic | 30.0% |
| ! | GTCTCTAAGAAATGAGTTAT+GGG | - | chr6.1:56052638-56052657 | MS.gene81199:intron | 30.0% |
| ! | GTTCATTTGCTCTGAATTAT+TGG | - | chr6.1:56052454-56052473 | MS.gene81199:intron | 30.0% |
| ! | TAAAGAGATTTTATACTGGC+AGG | - | chr6.1:56051847-56051866 | MS.gene81199:intron | 30.0% |
| ! | TAATCTACTGGCTACTTTAA+AGG | - | chr6.1:56053477-56053496 | MS.gene81199:intron | 30.0% |
| ! | TGTCTCTAAGAAATGAGTTA+TGG | - | chr6.1:56052637-56052656 | MS.gene81199:intron | 30.0% |
| ! | TTTTGTTCATTCCTTCCATA+TGG | - | chr6.1:56052487-56052506 | MS.gene81199:intron | 30.0% |
| !! | AGTTTTGACAAAACTGTATC+TGG | - | chr6.1:56052525-56052544 | MS.gene81199:intron | 30.0% |
| !! | GTTTTGACAAAACTGTATCT+GGG | - | chr6.1:56052526-56052545 | MS.gene81199:intron | 30.0% |
| !! | TAATTTTTGCTGTCCTTTTC+AGG | - | chr6.1:56052820-56052839 | MS.gene81199:intron | 30.0% |
| AACGTGACTCATTTACTTCT+TGG | - | chr6.1:56054118-56054137 | MS.gene81199:intron | 35.0% | |
| AAGTCAGGTATGGATGATTT+CGG | - | chr6.1:56053015-56053034 | MS.gene81199:intron | 35.0% | |
| ACTCAAGTAGACTATCAACA+TGG | + | chr6.1:56053715-56053734 | None:intergenic | 35.0% | |
| AGCTTTACTTGTTCCTGAAA+AGG | + | chr6.1:56052836-56052855 | None:intergenic | 35.0% | |
| ATTGCCAAGTAAATCCTGTA+GGG | + | chr6.1:56052425-56052444 | None:intergenic | 35.0% | |
| CACAACGCTAATTAATCTAC+TGG | - | chr6.1:56053465-56053484 | MS.gene81199:intron | 35.0% | |
| CAGGATTTACTTGGCAATAT+TGG | - | chr6.1:56052427-56052446 | MS.gene81199:intron | 35.0% | |
| CTCAATAAGGACTGAAAATC+AGG | - | chr6.1:56053630-56053649 | MS.gene81199:intron | 35.0% | |
| CTTAATGAGACATCAAAGTC+AGG | - | chr6.1:56053000-56053019 | MS.gene81199:intron | 35.0% | |
| CTTCCATTTATTTGGAAGGA+AGG | - | chr6.1:56052772-56052791 | MS.gene81199:intron | 35.0% | |
| GATAACCGGAATCAAACTAA+CGG | - | chr6.1:56054390-56054409 | MS.gene81199:intron | 35.0% | |
| GTCAAAACTCAAGAATGTCT+TGG | + | chr6.1:56052514-56052533 | None:intergenic | 35.0% | |
| TAATAAATGATGCCAGTGGA+TGG | + | chr6.1:56052274-56052293 | None:intergenic | 35.0% | |
| TAGATTCATTGTTCTGTTGG+TGG | - | chr6.1:56053095-56053114 | MS.gene81199:intron | 35.0% | |
| TATTGCCAAGTAAATCCTGT+AGG | + | chr6.1:56052426-56052445 | None:intergenic | 35.0% | |
| TCATGGTTAAGTGTGTTCAA+TGG | - | chr6.1:56053303-56053322 | MS.gene81199:intron | 35.0% | |
| TGCTAGATTCATTGTTCTGT+TGG | - | chr6.1:56053092-56053111 | MS.gene81199:intron | 35.0% | |
| TGTATATCTCAGGAGATAGT+AGG | - | chr6.1:56053797-56053816 | MS.gene81199:intron | 35.0% | |
| TGTGTGTGTGTATGTTTCAT+TGG | - | chr6.1:56053771-56053790 | MS.gene81199:intron | 35.0% | |
| TTAAAATTGGATGCGTAGAC+CGG | - | chr6.1:56052598-56052617 | MS.gene81199:intron | 35.0% | |
| TTATGTTTCTTGTAGGCTAG+TGG | - | chr6.1:56054529-56054548 | MS.gene81199:CDS | 35.0% | |
| TTCCCTTCCTTCCAAATAAA+TGG | + | chr6.1:56052778-56052797 | None:intergenic | 35.0% | |
| ! | AAATGCGATTAAGCACCTTT+TGG | - | chr6.1:56052228-56052247 | MS.gene81199:intron | 35.0% |
| ! | AACTTTTCCAAGATAGTGCT+TGG | - | chr6.1:56051718-56051737 | MS.gene81199:intron | 35.0% |
| ! | AAGGTGCTTAATCGCATTTA+GGG | + | chr6.1:56052227-56052246 | None:intergenic | 35.0% |
| ! | AATGCATTTCTCTTTTCGCA+TGG | - | chr6.1:56051675-56051694 | MS.gene81199:intron | 35.0% |
| ! | CAAGCATTTTCTAACAGATC+AGG | + | chr6.1:56053562-56053581 | None:intergenic | 35.0% |
| ! | CATTTGCTCTGAATTATTGG+TGG | - | chr6.1:56052457-56052476 | MS.gene81199:intron | 35.0% |
| ! | CCAAAACCAATGTGATTTTG+AGG | + | chr6.1:56053966-56053985 | None:intergenic | 35.0% |
| !! | AAAGGTGCTTAATCGCATTT+AGG | + | chr6.1:56052228-56052247 | None:intergenic | 35.0% |
| !! | TGCTGTTTCAGCAATTTCTT+TGG | + | chr6.1:56054212-56054231 | None:intergenic | 35.0% |
| !!! | CCTCAAAATCACATTGGTTT+TGG | - | chr6.1:56053963-56053982 | MS.gene81199:intron | 35.0% |
| !!! | CTCATGGGGATTTTAATTGA+AGG | - | chr6.1:56051593-56051612 | MS.gene81199:intron | 35.0% |
| AACAACAGTTTGGATGATGC+AGG | - | chr6.1:56053197-56053216 | MS.gene81199:CDS | 40.0% | |
| ACTTCATAAAGCCCTCGATT+GGG | - | chr6.1:56052975-56052994 | MS.gene81199:intron | 40.0% | |
| AGATACTTGGGAAATCTGAC+TGG | - | chr6.1:56052914-56052933 | MS.gene81199:intron | 40.0% | |
| AGATCAATTGGGAAAATGCC+AGG | + | chr6.1:56053073-56053092 | None:intergenic | 40.0% | |
| AGGCTAGTGGTGATATTGAT+TGG | - | chr6.1:56054542-56054561 | MS.gene81199:CDS | 40.0% | |
| AGGTGCTTAATCGCATTTAG+GGG | + | chr6.1:56052226-56052245 | None:intergenic | 40.0% | |
| ATTCCGGTTATCATGAAGTC+CGG | + | chr6.1:56054382-56054401 | None:intergenic | 40.0% | |
| CTAGTGAGCTAGTTGAATGT+GGG | - | chr6.1:56053892-56053911 | MS.gene81199:intron | 40.0% | |
| TATCAGAGTTCGCAAGTTCA+AGG | - | chr6.1:56053505-56053524 | MS.gene81199:intron | 40.0% | |
| TCATGAAGTCCGGTTGAATT+TGG | + | chr6.1:56054372-56054391 | None:intergenic | 40.0% | |
| TCTAGTGAGCTAGTTGAATG+TGG | - | chr6.1:56053891-56053910 | MS.gene81199:intron | 40.0% | |
| TGAAGTGGTTCAGTCAAAGA+AGG | + | chr6.1:56052961-56052980 | None:intergenic | 40.0% | |
| TGAGACATCAAAGTCAGGTA+TGG | - | chr6.1:56053005-56053024 | MS.gene81199:intron | 40.0% | |
| TTCCTCCCTCAAAATCACAT+TGG | - | chr6.1:56053957-56053976 | MS.gene81199:intron | 40.0% | |
| TTGCCAAGTAAATCCTGTAG+GGG | + | chr6.1:56052424-56052443 | None:intergenic | 40.0% | |
| TTTCCCCTACAGGATTTACT+TGG | - | chr6.1:56052418-56052437 | MS.gene81199:intron | 40.0% | |
| ! | AACTGTTTAGTTTCCCCTAC+AGG | - | chr6.1:56052408-56052427 | MS.gene81199:intron | 40.0% |
| ! | ACTAATGGCTTGCGAAACTT+TGG | - | chr6.1:56053329-56053348 | MS.gene81199:intron | 40.0% |
| ! | ATAGTCATTGAGGTGTCAGT+CGG | + | chr6.1:56054499-56054518 | None:intergenic | 40.0% |
| ! | TTTTGATATGCACCATCCAC+TGG | - | chr6.1:56052259-56052278 | MS.gene81199:intron | 40.0% |
| ! | TTTTTCCCTGCTGCTCAATA+AGG | - | chr6.1:56053617-56053636 | MS.gene81199:intron | 40.0% |
| !! | AACCAATGTGATTTTGAGGG+AGG | + | chr6.1:56053962-56053981 | None:intergenic | 40.0% |
| !! | CAAAAGCGCTCGTGTAATAT+TGG | + | chr6.1:56052161-56052180 | None:intergenic | 40.0% |
| !! | TCATTGTTCTGTTGGTGGTA+GGG | - | chr6.1:56053100-56053119 | MS.gene81199:CDS | 40.0% |
| !! | TTCATTGTTCTGTTGGTGGT+AGG | - | chr6.1:56053099-56053118 | MS.gene81199:intron | 40.0% |
| !!! | TATTTTGGCTTGCATACGTC+CGG | + | chr6.1:56052313-56052332 | None:intergenic | 40.0% |
| AATCCCCATGAGAAGAGCTT+CGG | + | chr6.1:56051585-56051604 | None:intergenic | 45.0% | |
| AATGTCTTGGCCCATATGGA+AGG | + | chr6.1:56052501-56052520 | None:intergenic | 45.0% | |
| AGAGCTTCGGTTCCTACTTT+AGG | + | chr6.1:56051572-56051591 | None:intergenic | 45.0% | |
| ATTTGGGTACATATGGCACG+TGG | - | chr6.1:56051967-56051986 | MS.gene81199:CDS | 45.0% | |
| CAACCGGACTTCATGATAAC+CGG | - | chr6.1:56054376-56054395 | MS.gene81199:intron | 45.0% | |
| CAAGAATGTCTTGGCCCATA+TGG | + | chr6.1:56052505-56052524 | None:intergenic | 45.0% | |
| CACAGACAGTAGACAAACTG+AGG | + | chr6.1:56053749-56053768 | None:intergenic | 45.0% | |
| CACTTCATAAAGCCCTCGAT+TGG | - | chr6.1:56052974-56052993 | MS.gene81199:intron | 45.0% | |
| CAGGACACTCAAGATCACAT+TGG | - | chr6.1:56053922-56053941 | MS.gene81199:intron | 45.0% | |
| CGGTTCAAGCCAAATTCAAC+CGG | - | chr6.1:56054360-56054379 | MS.gene81199:intron | 45.0% | |
| CTAGTTCAACCGATAGAACC+GGG | + | chr6.1:56054430-56054449 | None:intergenic | 45.0% | |
| CTCATTAAGTGCCCAATCGA+GGG | + | chr6.1:56052989-56053008 | None:intergenic | 45.0% | |
| GAAAATGTTCGAACCTACCG+TGG | - | chr6.1:56054329-56054348 | MS.gene81199:intron | 45.0% | |
| GCTAGTTCAACCGATAGAAC+CGG | + | chr6.1:56054431-56054450 | None:intergenic | 45.0% | |
| GGTGCTTAATCGCATTTAGG+GGG | + | chr6.1:56052225-56052244 | None:intergenic | 45.0% | |
| GTTGAATGTGGGAGACTTTC+AGG | - | chr6.1:56053903-56053922 | MS.gene81199:intron | 45.0% | |
| TCAATTGGGAAAATGCCAGG+AGG | + | chr6.1:56053070-56053089 | None:intergenic | 45.0% | |
| TCAGTCCTTATTGAGCAGCA+GGG | + | chr6.1:56053625-56053644 | None:intergenic | 45.0% | |
| TCTCATTAAGTGCCCAATCG+AGG | + | chr6.1:56052990-56053009 | None:intergenic | 45.0% | |
| TCTTGAGCCAAGCACTATCT+TGG | + | chr6.1:56051728-56051747 | None:intergenic | 45.0% | |
| TGTATTGAGAAGTAGCCTCC+TGG | - | chr6.1:56053052-56053071 | MS.gene81199:intron | 45.0% | |
| TGTCCTATTCCCGGTTCTAT+CGG | - | chr6.1:56054418-56054437 | MS.gene81199:intron | 45.0% | |
| TTCAGTCCTTATTGAGCAGC+AGG | + | chr6.1:56053626-56053645 | None:intergenic | 45.0% | |
| ! | AATCGCATTTAGGGGGCATA+TGG | + | chr6.1:56052218-56052237 | None:intergenic | 45.0% |
| ! | CAATCGAGGGCTTTATGAAG+TGG | + | chr6.1:56052976-56052995 | None:intergenic | 45.0% |
| ! | CGAAAGGTCTTGTCTGCTTT+AGG | - | chr6.1:56054169-56054188 | MS.gene81199:intron | 45.0% |
| ! | GTTCGCCGTTAGTTTGATTC+CGG | + | chr6.1:56054398-56054417 | None:intergenic | 45.0% |
| ! | GTTCTATCGGTTGAACTAGC+TGG | - | chr6.1:56054431-56054450 | MS.gene81199:intron | 45.0% |
| !! | ACAGCAGTGTTGACACTTTC+CGG | + | chr6.1:56052620-56052639 | None:intergenic | 45.0% |
| !! | CAGTCAAAGAAGGTACCACA+GGG | + | chr6.1:56052951-56052970 | None:intergenic | 45.0% |
| !! | CGGTTGAATTTGGCTTGAAC+CGG | + | chr6.1:56054362-56054381 | None:intergenic | 45.0% |
| !! | TCAGTCAAAGAAGGTACCAC+AGG | + | chr6.1:56052952-56052971 | None:intergenic | 45.0% |
| AACCTACCGTGGTTCAACTC+CGG | - | chr6.1:56054340-56054359 | MS.gene81199:intron | 50.0% | |
| AGAAGAATCGGCAGGTCGAA+AGG | - | chr6.1:56054153-56054172 | MS.gene81199:intron | 50.0% | |
| AGGAACCGAAGCTCTTCTCA+TGG | - | chr6.1:56051577-56051596 | MS.gene81199:intron | 50.0% | |
| CAACCGATAGAACCGGGAAT+AGG | + | chr6.1:56054424-56054443 | None:intergenic | 50.0% | |
| CTTGAACCGGAGTTGAACCA+CGG | + | chr6.1:56054349-56054368 | None:intergenic | 50.0% | |
| GAACCGAAGCTCTTCTCATG+GGG | - | chr6.1:56051579-56051598 | MS.gene81199:intron | 50.0% | |
| GGAACCGAAGCTCTTCTCAT+GGG | - | chr6.1:56051578-56051597 | MS.gene81199:intron | 50.0% | |
| TGGTCACAAGAAGAATCGGC+AGG | - | chr6.1:56054145-56054164 | MS.gene81199:intron | 50.0% | |
| AACCGGAGTTGAACCACGGT+AGG | + | chr6.1:56054345-56054364 | None:intergenic | 55.0% | |
| ACGGCGAACTGTCCTATTCC+CGG | - | chr6.1:56054409-56054428 | MS.gene81199:intron | 55.0% | |
| ATAGTGAGCTAGGCATGCCC+AGG | - | chr6.1:56052678-56052697 | MS.gene81199:intron | 55.0% | |
| !! | CAAAGAAGGTACCACAGGGC+TGG | + | chr6.1:56052947-56052966 | None:intergenic | 55.0% |
| CTGGTACTACTCCAGCCCTG+TGG | - | chr6.1:56052933-56052952 | MS.gene81199:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 56051536 | 56054585 | 56051536 | ID=MS.gene81199 |
| chr6.1 | mRNA | 56051536 | 56054585 | 56051536 | ID=MS.gene81199.t1;Parent=MS.gene81199 |
| chr6.1 | exon | 56054507 | 56054585 | 56054507 | ID=MS.gene81199.t1.exon1;Parent=MS.gene81199.t1 |
| chr6.1 | CDS | 56054507 | 56054585 | 56054507 | ID=cds.MS.gene81199.t1;Parent=MS.gene81199.t1 |
| chr6.1 | exon | 56053100 | 56053279 | 56053100 | ID=MS.gene81199.t1.exon2;Parent=MS.gene81199.t1 |
| chr6.1 | CDS | 56053100 | 56053279 | 56053100 | ID=cds.MS.gene81199.t1;Parent=MS.gene81199.t1 |
| chr6.1 | exon | 56051890 | 56052017 | 56051890 | ID=MS.gene81199.t1.exon3;Parent=MS.gene81199.t1 |
| chr6.1 | CDS | 56051890 | 56052017 | 56051890 | ID=cds.MS.gene81199.t1;Parent=MS.gene81199.t1 |
| chr6.1 | exon | 56051536 | 56051577 | 56051536 | ID=MS.gene81199.t1.exon4;Parent=MS.gene81199.t1 |
| chr6.1 | CDS | 56051536 | 56051577 | 56051536 | ID=cds.MS.gene81199.t1;Parent=MS.gene81199.t1 |
| Gene Sequence |
| Protein sequence |
