Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82742.t1 | XP_013459798.1 | 97.9 | 188 | 4 | 0 | 1 | 188 | 1 | 188 | 3.00E-95 | 357.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82742.t1 | Q94JQ4 | 67.7 | 189 | 55 | 4 | 3 | 188 | 2 | 187 | 1.6e-60 | 233.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82742.t1 | I3SK73 | 97.9 | 188 | 4 | 0 | 1 | 188 | 1 | 188 | 2.2e-95 | 357.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene82742 | -0.806852 | 6.73E-50 | -1.69E-46 |
| MS.gene049283 | MS.gene82742 | -0.817128 | 3.87E-52 | -1.69E-46 |
| MS.gene049385 | MS.gene82742 | 0.803613 | 3.21E-49 | -1.69E-46 |
| MS.gene049419 | MS.gene82742 | 0.812537 | 4.03E-51 | -1.69E-46 |
| MS.gene049499 | MS.gene82742 | -0.821116 | 4.79E-53 | -1.69E-46 |
| MS.gene049983 | MS.gene82742 | -0.811644 | 6.32E-51 | -1.69E-46 |
| MS.gene050945 | MS.gene82742 | -0.829228 | 5.79E-55 | -1.69E-46 |
| MS.gene051699 | MS.gene82742 | -0.800531 | 1.38E-48 | -1.69E-46 |
| MS.gene052533 | MS.gene82742 | -0.81206 | 5.13E-51 | -1.69E-46 |
| MS.gene052534 | MS.gene82742 | -0.808708 | 2.71E-50 | -1.69E-46 |
| MS.gene056776 | MS.gene82742 | -0.818761 | 1.66E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene82742 | -0.805377 | 1.37E-49 | -1.69E-46 |
| MS.gene056973 | MS.gene82742 | -0.806269 | 8.93E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene82742 | -0.827978 | 1.16E-54 | -1.69E-46 |
| MS.gene057919 | MS.gene82742 | -0.800356 | 1.50E-48 | -1.69E-46 |
| MS.gene058159 | MS.gene82742 | -0.818197 | 2.22E-52 | -1.69E-46 |
| MS.gene05985 | MS.gene82742 | 0.850764 | 1.37E-60 | -1.69E-46 |
| MS.gene060933 | MS.gene82742 | -0.832053 | 1.18E-55 | -1.69E-46 |
| MS.gene060935 | MS.gene82742 | -0.80103 | 1.09E-48 | -1.69E-46 |
| MS.gene060937 | MS.gene82742 | -0.81554 | 8.77E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82742.t1 | MTR_3g051740 | 97.872 | 188 | 4 | 0 | 1 | 188 | 1 | 188 | 1.31e-136 | 379 |
| MS.gene82742.t1 | MTR_5g092740 | 73.298 | 191 | 48 | 3 | 1 | 188 | 1 | 191 | 1.33e-95 | 276 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82742.t1 | AT3G20390 | 66.138 | 189 | 58 | 4 | 3 | 188 | 2 | 187 | 2.19e-81 | 239 |
| MS.gene82742.t1 | AT3G20390 | 66.138 | 189 | 58 | 4 | 3 | 188 | 70 | 255 | 2.93e-80 | 239 |
Find 53 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCCACCGGCGCGCTTCA+TGG | 0.245173 | 3.1:-38669680 | MS.gene82742:CDS |
| GCTTCATGGGCCGCCGGAAT+CGG | 0.288598 | 3.1:-38669666 | MS.gene82742:CDS |
| CTATTTGTCTCAGGTGTCCT+TGG | 0.335818 | 3.1:-38668277 | MS.gene82742:CDS |
| TTCCAGGTTGGCTGACTTGA+AGG | 0.345750 | 3.1:-38667523 | MS.gene82742:intron |
| AGAAAAGGCCCCAGCGGCAT+TGG | 0.366238 | 3.1:-38668335 | MS.gene82742:CDS |
| AACGGAGACTCCGCCGATTC+CGG | 0.378739 | 3.1:+38669653 | None:intergenic |
| GCTTTGATTGCTTGAGAATA+CGG | 0.405845 | 3.1:+38668310 | None:intergenic |
| TGGAGAACGGCGGTGTTGAT+TGG | 0.414869 | 3.1:+38669696 | None:intergenic |
| GAAAAGGCCCCAGCGGCATT+GGG | 0.423615 | 3.1:-38668334 | MS.gene82742:CDS |
| TCTCCACCGGCGCGCTTCAT+GGG | 0.434032 | 3.1:-38669679 | MS.gene82742:CDS |
| ATCGGCGGAGTCTCCGTTGC+CGG | 0.444540 | 3.1:-38669648 | MS.gene82742:CDS |
| TGAGACAAATAGAAGGTTGT+TGG | 0.447747 | 3.1:+38668288 | None:intergenic |
| AACAACCTTCTATTTGTCTC+AGG | 0.469075 | 3.1:-38668286 | MS.gene82742:CDS |
| ACTTGATACGTCGCACGAGC+TGG | 0.469228 | 3.1:+38666864 | None:intergenic |
| GCACGAGCTGGGGCAGGTGA+AGG | 0.482738 | 3.1:+38666876 | None:intergenic |
| CTTGATACGTCGCACGAGCT+GGG | 0.495903 | 3.1:+38666865 | None:intergenic |
| TGAGCGCAACATCGCAGTGC+CGG | 0.496910 | 3.1:+38669629 | None:intergenic |
| CGGCCCATGAAGCGCGCCGG+TGG | 0.502790 | 3.1:+38669676 | None:intergenic |
| GAATACGGTCCCAATGCCGC+TGG | 0.504483 | 3.1:+38668325 | None:intergenic |
| TCAACACCGCCGTTCTCCAC+CGG | 0.522058 | 3.1:-38669692 | MS.gene82742:CDS |
| CGGCGCGCTTCATGGGCCGC+CGG | 0.523403 | 3.1:-38669672 | MS.gene82742:CDS |
| TACGTCGCACGAGCTGGGGC+AGG | 0.534632 | 3.1:+38666870 | None:intergenic |
| CAACATCGCAGTGCCGGCAA+CGG | 0.534933 | 3.1:+38669635 | None:intergenic |
| TGTTGAAGATCAGACTGAGC+AGG | 0.545352 | 3.1:-38668104 | MS.gene82742:intron |
| AATACGGTCCCAATGCCGCT+GGG | 0.545961 | 3.1:+38668326 | None:intergenic |
| CGGCGGCCCATGAAGCGCGC+CGG | 0.548624 | 3.1:+38669673 | None:intergenic |
| GGACACCTGAGACAAATAGA+AGG | 0.553587 | 3.1:+38668281 | None:intergenic |
| TCATGGGCCGCCGGAATCGG+CGG | 0.556526 | 3.1:-38669663 | MS.gene82742:CDS |
| TCAAGTAGCTGCCTTGCCGT+TGG | 0.560196 | 3.1:-38666847 | MS.gene82742:CDS |
| GGAAGCTGTTCAGACAGAAA+AGG | 0.561997 | 3.1:-38668350 | MS.gene82742:CDS |
| TGAAGCGCGCCGGTGGAGAA+CGG | 0.562145 | 3.1:+38669683 | None:intergenic |
| AGAACGGCGGTGTTGATTGG+TGG | 0.567681 | 3.1:+38669699 | None:intergenic |
| CGGTGTTGATTGGTGGAATG+TGG | 0.579994 | 3.1:+38669706 | None:intergenic |
| GGAAAGGCTTAAGCAAAGGA+AGG | 0.586489 | 3.1:+38669584 | None:intergenic |
| GGAGACTCCGCCGATTCCGG+CGG | 0.590150 | 3.1:+38669656 | None:intergenic |
| CAGTGGAAAGGCTTAAGCAA+AGG | 0.596253 | 3.1:+38669580 | None:intergenic |
| TGGCGTCATGGTGTGCAGCA+AGG | 0.608058 | 3.1:-38669734 | MS.gene82742:CDS |
| ATTTCAATCTTAGCATCCAA+CGG | 0.611570 | 3.1:+38666831 | None:intergenic |
| TGTCCTTGGTCTTGTTCCCG+AGG | 0.614992 | 3.1:-38668263 | MS.gene82742:intron |
| GTGAGAAAGAAATGGCGTCA+TGG | 0.617536 | 3.1:-38669746 | None:intergenic |
| GCAGACAGGGAAGTTTGTCT+CGG | 0.622133 | 3.1:-38668131 | MS.gene82742:intron |
| AATCTTAGCATCCAACGGCA+AGG | 0.624757 | 3.1:+38666836 | None:intergenic |
| TGGGAACTTACGGGTATCAG+TGG | 0.629631 | 3.1:+38669563 | None:intergenic |
| TTGATACGTCGCACGAGCTG+GGG | 0.630943 | 3.1:+38666866 | None:intergenic |
| GAAAGGCTTAAGCAAAGGAA+GGG | 0.642611 | 3.1:+38669585 | None:intergenic |
| GTTGATTGGTGGAATGTGGA+AGG | 0.643074 | 3.1:+38669710 | None:intergenic |
| ACTTACGGGTATCAGTGGAA+AGG | 0.665039 | 3.1:+38669568 | None:intergenic |
| ATACGGTCCCAATGCCGCTG+GGG | 0.665669 | 3.1:+38668327 | None:intergenic |
| GGGGAGATCCTGAAATCTGG+GGG | 0.679110 | 3.1:-38667662 | MS.gene82742:CDS |
| AGCGCGCCGGTGGAGAACGG+CGG | 0.686629 | 3.1:+38669686 | None:intergenic |
| AAACCTCGGGAACAAGACCA+AGG | 0.710925 | 3.1:+38668260 | None:intergenic |
| TAAAAGTGAAGCTCACAGTG+CGG | 0.713988 | 3.1:+38666797 | None:intergenic |
| TCAGACAGAAAAGGCCCCAG+CGG | 0.726683 | 3.1:-38668341 | MS.gene82742:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAAATAAATAACAATAA+AGG | + | chr3.1:38669201-38669220 | None:intergenic | 10.0% |
| !! | TTGAAATAAATAACAATAAA+GGG | + | chr3.1:38669200-38669219 | None:intergenic | 10.0% |
| !! | TTTATTTCAATCAAAATAAT+TGG | - | chr3.1:38669210-38669229 | MS.gene82742:intron | 10.0% |
| !!! | ATTTTTATATGAATTAGATT+TGG | - | chr3.1:38667448-38667467 | MS.gene82742:intron | 10.0% |
| !!! | TTATACTTTATTTATGTAAA+AGG | - | chr3.1:38669476-38669495 | MS.gene82742:intron | 10.0% |
| !! | ATACTTAAACAAAAAATTTG+GGG | - | chr3.1:38667530-38667549 | MS.gene82742:intron | 15.0% |
| !! | CATACTTAAACAAAAAATTT+GGG | - | chr3.1:38667529-38667548 | MS.gene82742:intron | 15.0% |
| !! | TAACTATATAAGAAATTCAT+TGG | + | chr3.1:38669300-38669319 | None:intergenic | 15.0% |
| !! | TCATACTTAAACAAAAAATT+TGG | - | chr3.1:38667528-38667547 | MS.gene82742:intron | 15.0% |
| !!! | AAAGTTGATATGATTTATAA+TGG | - | chr3.1:38668695-38668714 | MS.gene82742:intron | 15.0% |
| !!! | TAATCAATACTTTTTCAAAT+TGG | - | chr3.1:38668041-38668060 | MS.gene82742:intron | 15.0% |
| !! | AAAATGTTGCTAATGTATAA+TGG | - | chr3.1:38667735-38667754 | MS.gene82742:intron | 20.0% |
| !! | AAAGAATGTAAACAATTTCA+AGG | + | chr3.1:38669110-38669129 | None:intergenic | 20.0% |
| !! | AAGTTTATATTTGTATGAAG+TGG | - | chr3.1:38667696-38667715 | MS.gene82742:intron | 20.0% |
| !! | ATTTACTAATCATTTACTTG+TGG | - | chr3.1:38669625-38669644 | MS.gene82742:CDS | 20.0% |
| !! | CCAGTAATAATTTGAAAAAA+TGG | + | chr3.1:38667929-38667948 | None:intergenic | 20.0% |
| !! | TAACAATCATTCAAAGATTT+AGG | + | chr3.1:38668620-38668639 | None:intergenic | 20.0% |
| !! | TTTAAACAATTACATATTGC+AGG | - | chr3.1:38668845-38668864 | MS.gene82742:intron | 20.0% |
| !!! | CCATTTTTTCAAATTATTAC+TGG | - | chr3.1:38667926-38667945 | MS.gene82742:intron | 20.0% |
| !!! | TATTTGTTCTTTCCTTATTT+TGG | - | chr3.1:38668949-38668968 | MS.gene82742:intron | 20.0% |
| !!! | TCATATTCTGTAATTTTACA+AGG | + | chr3.1:38669240-38669259 | None:intergenic | 20.0% |
| !!! | TTGTTTTGTCAATTTAGTAT+AGG | - | chr3.1:38667784-38667803 | MS.gene82742:intron | 20.0% |
| ! | AAAACAAATCACAATTGTGA+AGG | + | chr3.1:38667771-38667790 | None:intergenic | 25.0% |
| ! | AACATGTCAAAACAATTCAA+CGG | + | chr3.1:38667176-38667195 | None:intergenic | 25.0% |
| ! | AATAAAACCCACATAAATAG+AGG | + | chr3.1:38669608-38669627 | None:intergenic | 25.0% |
| ! | AGAATCCTTCAAACAAAAAA+AGG | + | chr3.1:38667638-38667657 | None:intergenic | 25.0% |
| ! | ATATAAAGATGCTGATAGAT+TGG | + | chr3.1:38668324-38668343 | None:intergenic | 25.0% |
| ! | CTAATGTATAATGGTTATTG+TGG | - | chr3.1:38667744-38667763 | MS.gene82742:intron | 25.0% |
| ! | CTTTGATTGTCCAAAATTAT+GGG | - | chr3.1:38668562-38668581 | MS.gene82742:intron | 25.0% |
| ! | GATAAAAAAATGCTTGTAAG+TGG | + | chr3.1:38667384-38667403 | None:intergenic | 25.0% |
| ! | GTAAAAGATTTCCAATCTAA+AGG | + | chr3.1:38669410-38669429 | None:intergenic | 25.0% |
| ! | TCAAATACAAAGCCAAAATA+AGG | + | chr3.1:38668964-38668983 | None:intergenic | 25.0% |
| ! | TTGTTTAAGTATGAACTTGT+TGG | + | chr3.1:38667522-38667541 | None:intergenic | 25.0% |
| !! | AAGATTTTCCTCTATTTATG+TGG | - | chr3.1:38669597-38669616 | MS.gene82742:CDS | 25.0% |
| !! | AGATTTTCCTCTATTTATGT+GGG | - | chr3.1:38669598-38669617 | MS.gene82742:CDS | 25.0% |
| !! | ATTCTGTAATTTTACAAGGA+TGG | + | chr3.1:38669236-38669255 | None:intergenic | 25.0% |
| !! | TATGCTAAATGTAAGTTTTG+TGG | - | chr3.1:38669067-38669086 | MS.gene82742:intron | 25.0% |
| !!! | ACAAGCAACATTTTTTGTAA+TGG | - | chr3.1:38667568-38667587 | MS.gene82742:intron | 25.0% |
| !!! | AGATTTGGAAGTTTTTAACT+AGG | - | chr3.1:38667463-38667482 | MS.gene82742:intron | 25.0% |
| !!! | ATCACTTTCTGATTGATTTT+AGG | - | chr3.1:38668162-38668181 | MS.gene82742:intron | 25.0% |
| !!! | TCACTTTCTGATTGATTTTA+GGG | - | chr3.1:38668163-38668182 | MS.gene82742:intron | 25.0% |
| AAAGTGAAGTGATTTATGTC+TGG | + | chr3.1:38667331-38667350 | None:intergenic | 30.0% | |
| AAATTGGTATAGAGCTACAA+AGG | - | chr3.1:38668057-38668076 | MS.gene82742:intron | 30.0% | |
| AACACACTCAAACAATCTAT+TGG | + | chr3.1:38669143-38669162 | None:intergenic | 30.0% | |
| AACACTGAATTATCAAACCT+CGG | + | chr3.1:38668301-38668320 | None:intergenic | 30.0% | |
| AATCATTAAGTGCACCATTA+TGG | + | chr3.1:38668812-38668831 | None:intergenic | 30.0% | |
| AGAGAAGAAAGTGAAATGAT+GGG | + | chr3.1:38667003-38667022 | None:intergenic | 30.0% | |
| ATCACTGTGTTTAAATTGAC+TGG | - | chr3.1:38667401-38667420 | MS.gene82742:intron | 30.0% | |
| ATCTAATCTTAGTGCATGTT+TGG | - | chr3.1:38667121-38667140 | MS.gene82742:intron | 30.0% | |
| ATTTCAATCTTAGCATCCAA+CGG | + | chr3.1:38669716-38669735 | None:intergenic | 30.0% | |
| CCAAATGGTATATTAATCAG+TGG | + | chr3.1:38667077-38667096 | None:intergenic | 30.0% | |
| GATTGAAGATTAATCTTCGA+AGG | - | chr3.1:38669440-38669459 | MS.gene82742:intron | 30.0% | |
| GCTTTGATTGTCCAAAATTA+TGG | - | chr3.1:38668561-38668580 | MS.gene82742:intron | 30.0% | |
| TACCTTGTCATATTTCACTT+TGG | - | chr3.1:38668524-38668543 | MS.gene82742:intron | 30.0% | |
| TATATGCCTACAAATTTAGC+CGG | + | chr3.1:38669353-38669372 | None:intergenic | 30.0% | |
| TCATTTACTTGTGGTTTGAA+TGG | - | chr3.1:38669634-38669653 | MS.gene82742:CDS | 30.0% | |
| TTTGACATGTTCAATTGCTT+CGG | - | chr3.1:38667185-38667204 | MS.gene82742:intron | 30.0% | |
| ! | AACATTTTCACTGCAGTTAA+AGG | + | chr3.1:38667723-38667742 | None:intergenic | 30.0% |
| ! | AGAACAAAACACTGATTACT+AGG | + | chr3.1:38668388-38668407 | None:intergenic | 30.0% |
| ! | AGTTTTGCACTAGGAAATTT+TGG | - | chr3.1:38667670-38667689 | MS.gene82742:CDS | 30.0% |
| ! | CAATTCAACGGAATCAATTT+TGG | + | chr3.1:38667164-38667183 | None:intergenic | 30.0% |
| ! | CCACTGATTAATATACCATT+TGG | - | chr3.1:38667074-38667093 | MS.gene82742:intron | 30.0% |
| ! | TAACATTTTCACAGACCAAA+TGG | + | chr3.1:38667092-38667111 | None:intergenic | 30.0% |
| ! | TACATGAAATTCTGAGAAAG+TGG | + | chr3.1:38667028-38667047 | None:intergenic | 30.0% |
| !! | ATTGATTTTAGGGATCAACA+AGG | - | chr3.1:38668173-38668192 | MS.gene82742:intron | 30.0% |
| !! | TGCATGTTTGGTTTCAATTT+TGG | - | chr3.1:38667133-38667152 | MS.gene82742:intron | 30.0% |
| !! | TTGGTGTTGTATTTCCATAA+TGG | - | chr3.1:38668795-38668814 | MS.gene82742:intron | 30.0% |
| !! | TTTCAACCTAAAGTGTTGAT+CGG | + | chr3.1:38667848-38667867 | None:intergenic | 30.0% |
| !!! | ATGGACCTTTTTTTGTTTGA+AGG | - | chr3.1:38667630-38667649 | MS.gene82742:CDS | 30.0% |
| !!! | ATTTTGGCTTTGTATTTGAG+TGG | - | chr3.1:38668965-38668984 | MS.gene82742:intron | 30.0% |
| AAAACTCTCAATAGAATGCC+TGG | - | chr3.1:38668764-38668783 | MS.gene82742:intron | 35.0% | |
| AACAACCTTCTATTTGTCTC+AGG | - | chr3.1:38668258-38668277 | MS.gene82742:intron | 35.0% | |
| ACACTGAATTATCAAACCTC+GGG | + | chr3.1:38668300-38668319 | None:intergenic | 35.0% | |
| AGCCAAAGTGAAATATGACA+AGG | + | chr3.1:38668529-38668548 | None:intergenic | 35.0% | |
| ATAGCCTTTCATGTTGTATG+TGG | - | chr3.1:38668483-38668502 | MS.gene82742:intron | 35.0% | |
| ATGGAAATACAACACCAAGA+CGG | + | chr3.1:38668793-38668812 | None:intergenic | 35.0% | |
| ATTCCCACATACAACATGAA+AGG | + | chr3.1:38668490-38668509 | None:intergenic | 35.0% | |
| ATTGCAGGTTCTCAAAAACA+TGG | - | chr3.1:38668860-38668879 | MS.gene82742:intron | 35.0% | |
| GAGAGAAGAAAGTGAAATGA+TGG | + | chr3.1:38667004-38667023 | None:intergenic | 35.0% | |
| GCTTTGATTGCTTGAGAATA+CGG | + | chr3.1:38668237-38668256 | None:intergenic | 35.0% | |
| GTTAATCCGGCTAAATTTGT+AGG | - | chr3.1:38669344-38669363 | MS.gene82742:intron | 35.0% | |
| TAACATCGTTCATTTCTTCC+AGG | - | chr3.1:38669005-38669024 | MS.gene82742:intron | 35.0% | |
| TAGCCTTTCATGTTGTATGT+GGG | - | chr3.1:38668484-38668503 | MS.gene82742:intron | 35.0% | |
| TCTCATTGATGTACAATGCA+GGG | - | chr3.1:38667603-38667622 | MS.gene82742:intron | 35.0% | |
| TGAGACAAATAGAAGGTTGT+TGG | + | chr3.1:38668259-38668278 | None:intergenic | 35.0% | |
| TTCCTAGTGCAAAACTAGAT+AGG | + | chr3.1:38667666-38667685 | None:intergenic | 35.0% | |
| TTCTCATTGATGTACAATGC+AGG | - | chr3.1:38667602-38667621 | MS.gene82742:intron | 35.0% | |
| TTGCAGGTTCTCAAAAACAT+GGG | - | chr3.1:38668861-38668880 | MS.gene82742:intron | 35.0% | |
| TTGCGCTGTAAAAGTTAATC+CGG | - | chr3.1:38669331-38669350 | MS.gene82742:intron | 35.0% | |
| TTTGTTCTCTAATGCAGACA+GGG | - | chr3.1:38668400-38668419 | MS.gene82742:intron | 35.0% | |
| ! | AGTGAAATGATGGGAACTTA+CGG | + | chr3.1:38666994-38667013 | None:intergenic | 35.0% |
| ! | ATGTACAATGCAGGGTTTTA+TGG | - | chr3.1:38667611-38667630 | MS.gene82742:intron | 35.0% |
| ! | GTATCTCAAGCCCATAATTT+TGG | + | chr3.1:38668575-38668594 | None:intergenic | 35.0% |
| ! | TTTTGTTCTCTAATGCAGAC+AGG | - | chr3.1:38668399-38668418 | MS.gene82742:intron | 35.0% |
| !!! | TTCCTATCTAGTTTTGCACT+AGG | - | chr3.1:38667661-38667680 | MS.gene82742:CDS | 35.0% |
| ACGTATCATTGTCGTGTCTT+TGG | - | chr3.1:38667954-38667973 | MS.gene82742:intron | 40.0% | |
| ACTAAGCACATTCAGAAAGC+TGG | + | chr3.1:38669568-38669587 | None:intergenic | 40.0% | |
| ATCGTTCATTTCTTCCAGGT+TGG | - | chr3.1:38669009-38669028 | MS.gene82742:intron | 40.0% | |
| CTACAAAGGAAGAGAGACAT+TGG | - | chr3.1:38668071-38668090 | MS.gene82742:intron | 40.0% | |
| GAAAGGCTTAAGCAAAGGAA+GGG | + | chr3.1:38666962-38666981 | None:intergenic | 40.0% | |
| GGCTTGAGATACTGTTTCAT+TGG | - | chr3.1:38668583-38668602 | MS.gene82742:intron | 40.0% | |
| GTGCAATTGTGCATTTATGC+TGG | - | chr3.1:38668348-38668367 | MS.gene82742:CDS | 40.0% | |
| TGCAGGTTCTCAAAAACATG+GGG | - | chr3.1:38668862-38668881 | MS.gene82742:intron | 40.0% | |
| ! | GTGAAATGATGGGAACTTAC+GGG | + | chr3.1:38666993-38667012 | None:intergenic | 40.0% |
| !! | CTTTAGGTTGAAAGCATGTC+TGG | - | chr3.1:38667855-38667874 | MS.gene82742:intron | 40.0% |
| !! | TAGCTGACTAGCCTTTAGAT+TGG | - | chr3.1:38669396-38669415 | MS.gene82742:intron | 40.0% |
| AATCTTAGCATCCAACGGCA+AGG | + | chr3.1:38669711-38669730 | None:intergenic | 45.0% | |
| ACTTACGGGTATCAGTGGAA+AGG | + | chr3.1:38666979-38666998 | None:intergenic | 45.0% | |
| CAGTGGAAAGGCTTAAGCAA+AGG | + | chr3.1:38666967-38666986 | None:intergenic | 45.0% | |
| CTATTTGTCTCAGGTGTCCT+TGG | - | chr3.1:38668267-38668286 | MS.gene82742:CDS | 45.0% | |
| GCAGGTTCTCAAAAACATGG+GGG | - | chr3.1:38668863-38668882 | MS.gene82742:intron | 45.0% | |
| GGAAAGGCTTAAGCAAAGGA+AGG | + | chr3.1:38666963-38666982 | None:intergenic | 45.0% | |
| GGAAGCTGTTCAGACAGAAA+AGG | - | chr3.1:38668194-38668213 | MS.gene82742:intron | 45.0% | |
| GGACACCTGAGACAAATAGA+AGG | + | chr3.1:38668266-38668285 | None:intergenic | 45.0% | |
| GTTGATTGGTGGAATGTGGA+AGG | + | chr3.1:38666837-38666856 | None:intergenic | 45.0% | |
| TGCACATGAACACCTGCAAA+AGG | + | chr3.1:38668005-38668024 | None:intergenic | 45.0% | |
| TGGCTATGTCAATGCTCCAT+AGG | - | chr3.1:38667974-38667993 | MS.gene82742:intron | 45.0% | |
| TGTTGAAGATCAGACTGAGC+AGG | - | chr3.1:38668440-38668459 | MS.gene82742:intron | 45.0% | |
| ! | GTGTTGATCGGTGCAACATA+GGG | + | chr3.1:38667836-38667855 | None:intergenic | 45.0% |
| ! | GTTGCACCGATCAACACTTT+AGG | - | chr3.1:38667839-38667858 | MS.gene82742:intron | 45.0% |
| !! | AGTGTTGATCGGTGCAACAT+AGG | + | chr3.1:38667837-38667856 | None:intergenic | 45.0% |
| AAACCTCGGGAACAAGACCA+AGG | + | chr3.1:38668287-38668306 | None:intergenic | 50.0% | |
| ACAACACCAAGACGGTTACC+AGG | + | chr3.1:38668785-38668804 | None:intergenic | 50.0% | |
| AGAATGCCTGGTAACCGTCT+TGG | - | chr3.1:38668776-38668795 | MS.gene82742:intron | 50.0% | |
| ATGGGGGAGATCCTGAAATC+TGG | - | chr3.1:38668879-38668898 | MS.gene82742:intron | 50.0% | |
| CCTGCAAAAGGTGAGTCCTA+TGG | + | chr3.1:38667993-38668012 | None:intergenic | 50.0% | |
| GCAGACAGGGAAGTTTGTCT+CGG | - | chr3.1:38668413-38668432 | MS.gene82742:intron | 50.0% | |
| TGATATGACGCTGACACACG+TGG | - | chr3.1:38667888-38667907 | MS.gene82742:intron | 50.0% | |
| TGGGAACTTACGGGTATCAG+TGG | + | chr3.1:38666984-38667003 | None:intergenic | 50.0% | |
| TGGGGGAGATCCTGAAATCT+GGG | - | chr3.1:38668880-38668899 | MS.gene82742:intron | 50.0% | |
| ! | CCATAGGACTCACCTTTTGC+AGG | - | chr3.1:38667990-38668009 | MS.gene82742:intron | 50.0% |
| !! | CGGTGTTGATTGGTGGAATG+TGG | + | chr3.1:38666841-38666860 | None:intergenic | 50.0% |
| !! | TTCCAGGTTGGCTGACTTGA+AGG | - | chr3.1:38669021-38669040 | MS.gene82742:intron | 50.0% |
| AATACGGTCCCAATGCCGCT+GGG | + | chr3.1:38668221-38668240 | None:intergenic | 55.0% | |
| ACTTGATACGTCGCACGAGC+TGG | + | chr3.1:38669683-38669702 | None:intergenic | 55.0% | |
| CTTGATACGTCGCACGAGCT+GGG | + | chr3.1:38669682-38669701 | None:intergenic | 55.0% | |
| GGGGAGATCCTGAAATCTGG+GGG | - | chr3.1:38668882-38668901 | MS.gene82742:intron | 55.0% | |
| GGGGGAGATCCTGAAATCTG+GGG | - | chr3.1:38668881-38668900 | MS.gene82742:intron | 55.0% | |
| GTCCTTCAAGTCAGCCAACC+TGG | + | chr3.1:38669026-38669045 | None:intergenic | 55.0% | |
| TCAAGTAGCTGCCTTGCCGT+TGG | - | chr3.1:38669697-38669716 | MS.gene82742:CDS | 55.0% | |
| TCAGACAGAAAAGGCCCCAG+CGG | - | chr3.1:38668203-38668222 | MS.gene82742:intron | 55.0% | |
| TTGATACGTCGCACGAGCTG+GGG | + | chr3.1:38669681-38669700 | None:intergenic | 55.0% | |
| !! | AGAACGGCGGTGTTGATTGG+TGG | + | chr3.1:38666848-38666867 | None:intergenic | 55.0% |
| !! | TGGAGAACGGCGGTGTTGAT+TGG | + | chr3.1:38666851-38666870 | None:intergenic | 55.0% |
| !! | TGTCCTTGGTCTTGTTCCCG+AGG | - | chr3.1:38668281-38668300 | MS.gene82742:CDS | 55.0% |
| AGAAAAGGCCCCAGCGGCAT+TGG | - | chr3.1:38668209-38668228 | MS.gene82742:intron | 60.0% | |
| AGCTCGCACCCCCAGATTTC+AGG | + | chr3.1:38668893-38668912 | None:intergenic | 60.0% | |
| ATACGGTCCCAATGCCGCTG+GGG | + | chr3.1:38668220-38668239 | None:intergenic | 60.0% | |
| GAAAAGGCCCCAGCGGCATT+GGG | - | chr3.1:38668210-38668229 | MS.gene82742:intron | 60.0% | |
| GAATACGGTCCCAATGCCGC+TGG | + | chr3.1:38668222-38668241 | None:intergenic | 60.0% | |
| TCAACACCGCCGTTCTCCAC+CGG | - | chr3.1:38666852-38666871 | MS.gene82742:CDS | 60.0% | |
| TGAGCGCAACATCGCAGTGC+CGG | + | chr3.1:38666918-38666937 | None:intergenic | 60.0% | |
| TGGCGTCATGGTGTGCAGCA+AGG | - | chr3.1:38666810-38666829 | MS.gene82742:CDS | 60.0% | |
| !! | AACGGAGACTCCGCCGATTC+CGG | + | chr3.1:38666894-38666913 | None:intergenic | 60.0% |
| !! | CAACATCGCAGTGCCGGCAA+CGG | + | chr3.1:38666912-38666931 | None:intergenic | 60.0% |
| ATCGGCGGAGTCTCCGTTGC+CGG | - | chr3.1:38666896-38666915 | MS.gene82742:intron | 65.0% | |
| GCTTCATGGGCCGCCGGAAT+CGG | - | chr3.1:38666878-38666897 | MS.gene82742:CDS | 65.0% | |
| TCTCCACCGGCGCGCTTCAT+GGG | - | chr3.1:38666865-38666884 | MS.gene82742:CDS | 65.0% | |
| TTCTCCACCGGCGCGCTTCA+TGG | - | chr3.1:38666864-38666883 | MS.gene82742:CDS | 65.0% | |
| ! | TGAAGCGCGCCGGTGGAGAA+CGG | + | chr3.1:38666864-38666883 | None:intergenic | 65.0% |
| GCACGAGCTGGGGCAGGTGA+AGG | + | chr3.1:38669671-38669690 | None:intergenic | 70.0% | |
| TACGTCGCACGAGCTGGGGC+AGG | + | chr3.1:38669677-38669696 | None:intergenic | 70.0% | |
| TCATGGGCCGCCGGAATCGG+CGG | - | chr3.1:38666881-38666900 | MS.gene82742:CDS | 70.0% | |
| !! | GGAGACTCCGCCGATTCCGG+CGG | + | chr3.1:38666891-38666910 | None:intergenic | 70.0% |
| ! | AGCGCGCCGGTGGAGAACGG+CGG | + | chr3.1:38666861-38666880 | None:intergenic | 75.0% |
| ! | CGGCCCATGAAGCGCGCCGG+TGG | + | chr3.1:38666871-38666890 | None:intergenic | 80.0% |
| ! | CGGCGCGCTTCATGGGCCGC+CGG | - | chr3.1:38666872-38666891 | MS.gene82742:CDS | 80.0% |
| ! | CGGCGGCCCATGAAGCGCGC+CGG | + | chr3.1:38666874-38666893 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 38666809 | 38669757 | 38666809 | ID=MS.gene82742 |
| chr3.1 | mRNA | 38666809 | 38669757 | 38666809 | ID=MS.gene82742.t1;Parent=MS.gene82742 |
| chr3.1 | exon | 38669574 | 38669757 | 38669574 | ID=MS.gene82742.t1.exon1;Parent=MS.gene82742.t1 |
| chr3.1 | CDS | 38669574 | 38669757 | 38669574 | ID=cds.MS.gene82742.t1;Parent=MS.gene82742.t1 |
| chr3.1 | exon | 38668264 | 38668382 | 38668264 | ID=MS.gene82742.t1.exon2;Parent=MS.gene82742.t1 |
| chr3.1 | CDS | 38668264 | 38668382 | 38668264 | ID=cds.MS.gene82742.t1;Parent=MS.gene82742.t1 |
| chr3.1 | exon | 38668105 | 38668149 | 38668105 | ID=MS.gene82742.t1.exon3;Parent=MS.gene82742.t1 |
| chr3.1 | CDS | 38668105 | 38668149 | 38668105 | ID=cds.MS.gene82742.t1;Parent=MS.gene82742.t1 |
| chr3.1 | exon | 38667626 | 38667699 | 38667626 | ID=MS.gene82742.t1.exon4;Parent=MS.gene82742.t1 |
| chr3.1 | CDS | 38667626 | 38667699 | 38667626 | ID=cds.MS.gene82742.t1;Parent=MS.gene82742.t1 |
| chr3.1 | exon | 38667490 | 38667539 | 38667490 | ID=MS.gene82742.t1.exon5;Parent=MS.gene82742.t1 |
| chr3.1 | CDS | 38667490 | 38667539 | 38667490 | ID=cds.MS.gene82742.t1;Parent=MS.gene82742.t1 |
| chr3.1 | exon | 38666809 | 38666903 | 38666809 | ID=MS.gene82742.t1.exon6;Parent=MS.gene82742.t1 |
| chr3.1 | CDS | 38666809 | 38666903 | 38666809 | ID=cds.MS.gene82742.t1;Parent=MS.gene82742.t1 |
| Gene Sequence |
| Protein sequence |
