AlfalfaGEDB | MS.gene049385

M. sativa cultivar XinJiangDaYe / MS.gene049385

KEGG: K04564
GO: GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0006801 GO:0008150 GO:0008152 GO:0009987 GO:0016209 GO:0016491 GO:0016721 GO:0043167 GO:0043169 GO:0044237 GO:0046872 GO:0055114 GO:0072593
PFAM: PF00081.25 PF02777.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049385.t1	XP_013461533.1	98.3	233	4	0	1	233	1	233	3.00E-129	471.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049385.t1	P27084	87.9	239	18	3	1	235	1	232	2.5e-116	419.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049385.t1	I3T560	98.3	233	4	0	1	233	1	233	2.2e-129	471.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049385	MS.gene053272	0.818891	1.55E-52	-1.69E-46
MS.gene049385	MS.gene059338	0.959877	6.28E-118	-1.69E-46
MS.gene049385	MS.gene06551	0.834327	3.20E-56	-1.69E-46
MS.gene049385	MS.gene072153	-0.810156	1.33E-50	-1.69E-46
MS.gene049385	MS.gene36022	0.811075	8.39E-51	-1.69E-46
MS.gene049385	MS.gene36571	-0.804498	2.10E-49	-1.69E-46
MS.gene049385	MS.gene39376	0.811258	7.66E-51	-1.69E-46
MS.gene049385	MS.gene52592	0.811537	6.66E-51	-1.69E-46
MS.gene049385	MS.gene68543	-0.804369	2.23E-49	-1.69E-46
MS.gene049385	MS.gene69206	0.83787	4.03E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049385.t1	MTR_3g094250	98.283	233	4	0	1	233	1	233	2.66e-171	471
MS.gene049385.t1	MTR_3g078860	32.328	232	140	8	7	229	20	243	2.81e-29	110
MS.gene049385.t1	MTR_1g048990	32.189	233	129	9	24	232	42	269	4.83e-24	97.8
MS.gene049385.t1	MTR_1g048990	30.500	200	111	8	24	200	42	236	1.53e-14	70.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049385.t1	AT3G10920	74.569	232	54	1	1	232	1	227	1.09e-129	365
MS.gene049385.t1	AT3G10920	74.138	232	54	2	1	232	1	226	2.90e-127	359
MS.gene049385.t1	AT3G56350	72.864	199	54	0	37	235	37	235	9.87e-110	315
MS.gene049385.t1	AT5G23310	35.417	192	111	7	43	227	57	242	4.89e-31	115
MS.gene049385.t1	AT5G51100	35.124	242	123	11	17	233	33	265	2.89e-27	106
MS.gene049385.t1	AT5G51100	35.922	206	99	10	52	233	1	197	3.95e-24	96.7
MS.gene049385.t1	AT5G51100	35.922	206	99	10	52	233	1	197	3.95e-24	96.7
MS.gene049385.t1	AT4G25100	34.634	205	120	7	34	233	11	206	1.56e-23	94.4
MS.gene049385.t1	AT4G25100	34.634	205	120	7	34	233	11	206	1.56e-23	94.4
MS.gene049385.t1	AT4G25100	34.634	205	120	7	34	233	11	206	1.56e-23	94.4

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Find 63 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTTAATGCAGAAGGTG+CGG	0.640178	3.1:-75376690	MS.gene049385:CDS
AAGTCTGATGATGTTTCTGA+TGG	0.672245	3.1:+75377930	None:intergenic
AATGCTATCAAGTTCAACGG+TGG	0.689102	3.1:-75377824	MS.gene049385:CDS
ACAAGTTTGGTTCCATTGCT+CGG	0.516866	3.1:-75375171	MS.gene049385:CDS
ACATTTGGAAAGTTATTAAC+TGG	0.319701	3.1:-75373508	MS.gene049385:CDS
ACCAAAGGAAGCCCTGGGAT+GGG	0.518424	3.1:-75376753	MS.gene049385:CDS
AGAACCAAAATTTGTGTCAA+TGG	0.417539	3.1:+75376730	None:intergenic
AGGAGGTGGTGAACCACCAA+AGG	0.612681	3.1:-75376768	MS.gene049385:CDS
ATACAAAAGGTTAATGCAGA+AGG	0.549829	3.1:-75376695	MS.gene049385:CDS
ATGATTTCGCCGCTGATGAC+AGG	0.463952	3.1:+75377962	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATAAGCCAATCCAAAC+GGG	+	chr3.1:75374128-75374147	None:intergenic	30.0%
AAAAGTTCAACGTAAAAAGG+AGG	+	chr3.1:75375731-75375750	None:intergenic	30.0%
AAACCTAAACAATAACGATG+GGG	-	chr3.1:75377343-75377362	MS.gene049385:intron	30.0%
AAGAACCATTGAATACAGAA+TGG	+	chr3.1:75374764-75374783	None:intergenic	30.0%
AATCCATATTGCTTGTAAAC+TGG	-	chr3.1:75374536-75374555	MS.gene049385:intron	30.0%
ACAATGTCTGGTCATATATT+AGG	-	chr3.1:75377777-75377796	MS.gene049385:intron	30.0%
ACCCATTTAGTGATATTGTT+GGG	-	chr3.1:75376142-75376161	MS.gene049385:intron	30.0%
AGAACCAAAATTTGTGTCAA+TGG	+	chr3.1:75374854-75374873	None:intergenic	30.0%
AGTTTACAAGCAATATGGAT+TGG	+	chr3.1:75374537-75374556	None:intergenic	30.0%
ATACAAAAGGTTAATGCAGA+AGG	-	chr3.1:75374886-75374905	MS.gene049385:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	75373472	75378131	75373472	ID=MS.gene049385
chr3.1	mRNA	75373472	75378131	75373472	ID=MS.gene049385.t1;Parent=MS.gene049385
chr3.1	exon	75377822	75378131	75377822	ID=MS.gene049385.t1.exon1;Parent=MS.gene049385.t1
chr3.1	CDS	75377822	75378131	75377822	ID=cds.MS.gene049385.t1;Parent=MS.gene049385.t1
chr3.1	exon	75376876	75376922	75376876	ID=MS.gene049385.t1.exon2;Parent=MS.gene049385.t1
chr3.1	CDS	75376876	75376922	75376876	ID=cds.MS.gene049385.t1;Parent=MS.gene049385.t1
chr3.1	exon	75376667	75376792	75376667	ID=MS.gene049385.t1.exon3;Parent=MS.gene049385.t1
chr3.1	CDS	75376667	75376792	75376667	ID=cds.MS.gene049385.t1;Parent=MS.gene049385.t1
chr3.1	exon	75376490	75376546	75376490	ID=MS.gene049385.t1.exon4;Parent=MS.gene049385.t1
chr3.1	CDS	75376490	75376546	75376490	ID=cds.MS.gene049385.t1;Parent=MS.gene049385.t1
chr3.1	exon	75375137	75375214	75375137	ID=MS.gene049385.t1.exon5;Parent=MS.gene049385.t1
chr3.1	CDS	75375137	75375214	75375137	ID=cds.MS.gene049385.t1;Parent=MS.gene049385.t1
chr3.1	exon	75373472	75373561	75373472	ID=MS.gene049385.t1.exon6;Parent=MS.gene049385.t1
chr3.1	CDS	75373472	75373561	75373472	ID=cds.MS.gene049385.t1;Parent=MS.gene049385.t1

Gene Sequence

>MS.gene049385

ATGGCCGTTCGAACCCTACTGAGCAAAAAAACTCTAACCACCGTCCTCCGCAGTGATCCAAAACCAATCGGAGCAGCCATAGCTCAATCCCGTGGCTTACATGTCTTCACACTCCCCGATCTCGCTTACGACTATGGCGCTTTGGAGCCTGTCATCAGCGGCGAAATCATGCAGATTCACCATCAGAAACATCATCAGACTTACATTACCAACTATAACAAAGCGCTTGAACAGCTTCACGATTCTGTTGCCAAAGCTGATTCCTCAACCACCGTTAAGCTTCAAAATGCTATCAAGTTCAACGGTGGAGGTTAGTTCCGTCATTTCTCTCTTTTTTTTTAATTTTTTATTTTTATTTTTTATTATCCGGTTAATTAAACGAAAAATTACGGCGAAATCGTCATTTGTTATTGGTTATCGTAGCTTAATTTTTAGGTTATTGTGAATGATAAGTTAGTTCACCTTATGGCATAAGATATTTCTAGAAGAAATGATAAAATTAATAAAATTGTTTTTATGTATAAGCTATAAGCTGTTTTGTTAAGCTATCCTGGAGAGTTTATGGAAATAAGCTGAAAACAGCTTATAGATGTCATTAACGGTATATATAAGCTCTTTCTCAAGCAGTCTCACAAATATTTATGCCACTAGGGCCCGTTTGGATTGGCTTATTTTTTAGCTTATGCAAATAAATAAGCTTTTATGTGTTATTCATAAGCTTGTCAAGGTAGTTTATGAAAAAAAACAGCTTATGAAGATACAATTTTCGTGATTGAGAACTTATGAATTAACTTAAAAGCTTATTTATTTGAATAAGCTATTTTTCATTAGCTCGTAAATAAGTCAATACAAACGGGCCCTAGATGAAAGACCTGTTTGGATTGACTTATTCTAGCTTAAATACTGGCATAAGCACTAGTGAGGTTGTTTAATTGAAGTTATGAAAACAACTTATAACTTATATGAAAATGATTTAACTTTCTTTTATTTTTTGTTATAGAAATAGCTTACCATAAGCTGCAAATTAAGCTGTTTATCCAAACAGGGACAAATTCAAATAAGCCAATCCATATTGCTTGTAAACTGGTCGGGGTTTCACATTTACCTTTTGAGAGAAACTATGATAGGTTTTGAAATGAACTAAACAAAATTTTCAAAAGAGTAGCATGCAAAGGTTTTCCATATATGATTAATTGTCATTTATTGCAGGTCATATCAACCATTCTATTTTCTGGAAAAATCTGGCTCCTGTTCGTGTAAGTTTTTGCCTTGATTCCGTTACATGGAAACCATTCTGTATTCAATGGTTCTTTTACCTGATACTTTACACCTTGTGCAGGAAGGAGGTGGTGAACCACCAAAGGAAGCCCTGGGATGGGCCATTGACACAAATTTTGGTTCTTTAGAAGCGTTGATACAAAAGGTTAATGCAGAAGGTGCGGCTCTTCAAGGGTCTGGATGGGTGGTAAGTTTTGTGGATTCTGAAATTTCCAGCATGTATTCTATGTAAATCATTAGAGCTCGATCATTGTTTTTATTTGAAGTGCCCTTGTTTTGTCTTAATCAATTTGTACTGCATTGCCAGTGGCTTGCTCTTGACAAAGAATTGAAGAGGCTTGTGGTTGAAACCACTGCAAATCAGGTAAACTTCCTCTCTTCCCCTTCCACCTCCAACAAACTTCGTCCCTTTTCCGAGATGCTAAGAGGCAAAGAAAACTGATAGCAAGTTAAATTTGTTTCTCTTTTTTTGTTTGATTACAAATTCTGGTTTTTTTTAGCTAAATTTGTATTTCTGTTATATCTCATTTCACACCATTCTAGATCTTTACACCTTACATCGCTATTACCAATAGTTAATATTAGTTACATTAAATGAATGAGATCAAATTATTGCTATTGTATCTTCTGATTTTTCAAAACAATGGGACAAGCTCTAAATAATGCTCCATTATTATAATATGGGTTTGATTTTGAGACTTTGATCTTATCTATAGTGATAAATTCATAATTATACATTCAAACTCTGTAGTTTTGCTATTTGTATTGATTTTCCCATTTCTATACTTTTCTTGTCTGTGGGTCACGACATACATTTCAAAAAATGTACAGTGAAGTCCCTAGCCTACCACCATAAATTCTTCTATATCCATCTAAAGAATGTCCTTCCCAGTGGAGAAGATGCATGTTATGAATACCAAACAATTCGTAGCTGTATACACCAATAAAATTTACGTATCTTGCCACAATTTATTTTGGCCTCCTTTTTACGTTGAACTTTTTTTAGTTTCATCCGAGTCAGAGCACCTCTTTGTATGAACTCTTGGTTCTGTGTCTTTTTCATTTCTTTTTATGATCGAACTCTTTAATTGCTGCACTTTTTTTTTCTACACCCAACCCCCGATTAATCAACAGGCCTCAAGTGACTATGTTCTCTTTAACTCTATTTAACCACTATATCTCTGACTCCATTGCTGATTTATAGTGCAATGATGCTGAAGCTATCTGGCATTTTTCTTTTTTTTTTTTTTTGCATATGACAAAAGTATTCTTAGTCGTATAAGTTCAATTTTGATGATGCTATAATGTTTATTGATTTCAGGGACTTGATTGCATTTTTTCTCTTAAAATGCCAGGATTGAATTCCAATTTCTAGAGAAAAATGGTGCAATGACCCATTTAGTGATATTGTTGGGACTTGGGATTAAATATATAACTAAACATTTTCTATATGCAATTTTCTTCGTATATGGACTCTGCATGTTGATGGGATTTATGATATTTAAAAATGGGTACTTGTTAACAGTTTTCCCCTTCCGTCATGCTCATTATTTTTAACTTTTGTAAATAATGTTTTCTATGCATACGTCATTTCTGGTTTGTTTAATTTCTGATGTAAATTTGAACATTTTATTTGCAGGACCCATTGGTTACTAAAGGAACAAGTTTGGTTCCATTGCTCGGTATAGATGTTTGGGAACATGCCTACTACTTACAGGTAAAATTTTGGACTTGGGTTCCCCCCCTTTCTCCAATTCCTCTCTCGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCATACACCTGTAGCTAAACATTTCAATTAGCCCACTCTTCTTTAGTTCAGCCTTTTCATTCCCTGGCATTAACATGTATTATGGGTCTATTGAAAACCTGAACTAACATAAACTCACATGACCTGATGACATACAAACACGACGTCTCAAGCGAACAAACTGAGGACAAGGAACTAATCCTAGCTTTTCACAGGGGTTTCTATGGAACGGATACTATCTGGAGAGATAGTAAGATCAAGACCTCATGAATTCCGATTGTTAAGACCCATGCCCGCAGTGTGGAAATTTATTAGAGAAAAAATAAGAGGGATGAAAGAGAATGCTGATGTGGTAGGGGGTGAGGAAAGAGTGTTACCCAACTTATGGGAGTCAGTTATATAGGGATTGAGGAGAGAAAGAATGGGTATCTTATGAAAATTATTCTTGTGTTAGTTATGGGCAGAGAACATTGTTCTCTGTAGGAGCTTGGCTCTGTGGGCATTAGGATATTCGTTATTGTGCAGTTATCTTTTTATTATTCAAGCAGTCTCATATTTTCAGTGACTTCCTCATTTTTATGCTATTTACTCTTTATATGATTTATGGTTCCTATCAAATTCTTACAAAATCATTAAAGGGGTAGAGTATCTTTTTCTTCAATGTAGAAGTGACTATTCATCATGAAACTTGTCCTTCACATATTTTTCCACTGCATTGTAGAATTTATTTGCATCTTGATATTCCTGACCAGTTGTACTGCATCAAAATGTGATTGTGAAAATATCTTGCTTTATGAACTCAGTGTAAACCTAAACAATAACGATGGGGCAAAAAGATGCCATAACGTCCTCTGCAGTTTCAGAGCTTCATAACTAAATTAAATTAATTTTGAATAATGGAAGTAGAAAATAATTGCTAAATTGTATCATATTTTACTTGTAGTGATTACATTTCTTTGCCAGCTTAATTGATACAAGAATAAATAAATCAACAGTTTACTTAAGCTTCAGGTCAATGATTTGTTAAAACTACCTTATAATATTTATTTTTCTCCTCTTATGGTTGTTAGAAGTTAGATTTTTAAAACTCACTCACTTCCTTTTCCTCCCCGTGTATTTACCCCACTATCTCTGTGTGAAATCATAGATTCAGTTGTGCTTTACCTCCCCTTTAGAGTACAATAATCAAGTCTTTCCTCACTAGGCAAAGTTGGTTATATGAATTAATTGATGAAATGAAACAATGTCTGGTCATATATTAGGTTCAAAATATATTTTTTACCTCCTCGCAGCAAAGAAATGTATTCAGCACACTTCAGTTCCTTAAGTGCAAATTTTTTGAAAATATATTTATCTCATTTTGCGTTGCTTATCAATGTAGAAGCTCATATCGTGCTGTTTGACAATCATTAAGAAAGAAATCAAAACATACAGTGTTCTGAGATTCCTAGTGGCACATTAGTTTTCTAAGGATTTTCTTATTTATGTTTGTTTTGTTATTGCAGTACAAGAACGTCAGACCAGACTATTTGAAGAACATTTGGAAAGTTATTAACTGGAAATATGCCAGTGAAGTGTATGAGAGCAATTCCTAA

Protein sequence

>MS.gene049385.t1

MAVRTLLSKKTLTTVLRSDPKPIGAAIAQSRGLHVFTLPDLAYDYGALEPVISGEIMQIHHQKHHQTYITNYNKALEQLHDSVAKADSSTTVKLQNAIKFNGGGHINHSIFWKNLAPVREGGGEPPKEALGWAIDTNFGSLEALIQKVNAEGAALQGSGWVWLALDKELKRLVVETTANQDPLVTKGTSLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYASEVYESNS