AlfalfaGEDB | MS.gene83052

M. sativa cultivar XinJiangDaYe / MS.gene83052

KEGG: -
GO: GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0007165 GO:0008150 GO:0009987 GO:0035556 GO:0050789 GO:0050794 GO:0065007 GO:0097159 GO:0140110 GO:1901363
PFAM: PF00072.27 PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83052.t1	XP_013466594.1	85.9	633	74	2	1	625	1	626	4.10E-282	980.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83052.t1	A2XE31	52.9	403	173	8	17	406	11	409	1.1e-97	359.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83052.t1	A0A072VGA4	85.9	633	74	2	1	625	1	626	3.0e-282	980.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene83052.t1	TF	GARP-ARR-B

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene83052	0.815227	1.03E-51	-1.69E-46
MS.gene049153	MS.gene83052	0.806535	7.85E-50	-1.69E-46
MS.gene049297	MS.gene83052	0.805455	1.32E-49	-1.69E-46
MS.gene050168	MS.gene83052	0.805306	1.42E-49	-1.69E-46
MS.gene050330	MS.gene83052	-0.825371	4.86E-54	-1.69E-46
MS.gene050558	MS.gene83052	0.826817	2.20E-54	-1.69E-46
MS.gene050642	MS.gene83052	0.814327	1.63E-51	-1.69E-46
MS.gene050820	MS.gene83052	0.810062	1.39E-50	-1.69E-46
MS.gene051860	MS.gene83052	0.816009	6.90E-52	-1.69E-46
MS.gene053836	MS.gene83052	0.817725	2.84E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83052.t1	MTR_1g032570	93.049	633	29	2	1	625	1	626	0.0	1123
MS.gene83052.t1	MTR_1g032570	93.716	557	27	1	77	625	1	557	0.0	988
MS.gene83052.t1	MTR_4g121020	56.798	331	133	5	8	334	21	345	7.60e-116	361
MS.gene83052.t1	MTR_4g121020	56.798	331	133	5	8	334	21	345	7.72e-116	361
MS.gene83052.t1	MTR_2g034960	58.438	320	119	4	8	320	14	326	2.67e-113	352
MS.gene83052.t1	MTR_8g079940	57.778	270	107	3	18	286	25	288	3.49e-97	308
MS.gene83052.t1	MTR_3g086100	57.353	272	109	2	17	286	12	278	1.14e-96	307
MS.gene83052.t1	MTR_3g106220	54.082	294	113	4	18	304	8	286	2.24e-93	301
MS.gene83052.t1	MTR_1g013170	53.462	260	116	2	17	275	4	259	2.44e-84	273
MS.gene83052.t1	MTR_4g131600	51.186	295	129	7	18	311	20	300	6.53e-83	272

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83052.t1	AT3G16857	54.037	322	130	3	18	321	33	354	1.08e-106	337
MS.gene83052.t1	AT2G01760	57.962	314	107	6	17	323	6	301	2.14e-106	327
MS.gene83052.t1	AT3G16857	54.037	322	130	3	18	321	33	354	2.60e-106	336
MS.gene83052.t1	AT2G01760	53.216	342	107	7	17	323	6	329	2.16e-100	312
MS.gene83052.t1	AT3G16857	53.169	284	115	3	56	321	1	284	4.42e-89	289
MS.gene83052.t1	AT2G25180	56.274	263	106	3	17	278	12	266	3.92e-87	283
MS.gene83052.t1	AT1G67710	59.216	255	94	5	15	265	4	252	5.50e-87	281
MS.gene83052.t1	AT4G31920	52.344	256	103	2	17	272	12	248	1.49e-79	262
MS.gene83052.t1	AT2G01760	55.512	254	88	6	77	323	1	236	1.14e-74	242
MS.gene83052.t1	AT5G58080	45.928	307	148	5	17	316	13	308	9.93e-71	241

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Find 139 sgRNAs with CRISPR-Local

Find 423 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATGAAGATGTTGAGT+TGG	0.460862	1.4:-17108668	MS.gene83052:CDS
AAAATTCTGCGAGAAAGGAA+AGG	0.584113	1.4:-17109156	MS.gene83052:CDS
AAAGTATTCATGGCTAGCAA+TGG	0.600983	1.4:-17106139	MS.gene83052:CDS
AAATGTTGCAAGTCATTTGC+AGG	0.369685	1.4:-17108353	MS.gene83052:intron
AAATTATTGACGATGTCGAA+AGG	0.566946	1.4:+17106823	None:intergenic
AACACTATTTACTGCCTGGA+AGG	0.557646	1.4:+17106552	None:intergenic
AACACTTGCAGCTCTTCAGG+CGG	0.620247	1.4:-17106959	MS.gene83052:CDS
AACTAACATAATGCCTACAG+TGG	0.706212	1.4:-17106917	MS.gene83052:CDS
AACTCCGGTGAGTTTCCGGC+TGG	0.403113	1.4:-17112070	MS.gene83052:CDS
AAGAGCTGCAAGTGTTTCAG+GGG	0.639399	1.4:+17106966	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGATGAAGATGTTGAGT+TGG	-	chr1.4:17109465-17109484	MS.gene83052:intron	30.0%
AAAGCAAATGGCATTTGAAT+TGG	+	chr1.4:17107268-17107287	None:intergenic	30.0%
AAATATCAAGTTTGCAATGG+AGG	-	chr1.4:17108512-17108531	MS.gene83052:intron	30.0%
AAATTATTGACGATGTCGAA+AGG	+	chr1.4:17111313-17111332	None:intergenic	30.0%
AAATTTCTGCCAATTCACAA+TGG	+	chr1.4:17111008-17111027	None:intergenic	30.0%
AAGCAAATGGCATTTGAATT+GGG	+	chr1.4:17107267-17107286	None:intergenic	30.0%
AAGTTAACCATACTTGACTT+AGG	-	chr1.4:17107732-17107751	MS.gene83052:intron	30.0%
AATAATGAAGATGGTTCTCA+AGG	+	chr1.4:17109843-17109862	None:intergenic	30.0%
AATCACATCAATCTGTTGTT+AGG	-	chr1.4:17110112-17110131	MS.gene83052:intron	30.0%
AATTATTGACGATGTCGAAA+GGG	+	chr1.4:17111312-17111331	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	17106024	17112131	17106024	ID=MS.gene83052
chr1.4	mRNA	17106024	17112131	17106024	ID=MS.gene83052.t1;Parent=MS.gene83052
chr1.4	exon	17111990	17112131	17111990	ID=MS.gene83052.t1.exon1;Parent=MS.gene83052.t1
chr1.4	CDS	17111990	17112131	17111990	ID=cds.MS.gene83052.t1;Parent=MS.gene83052.t1
chr1.4	exon	17109058	17109210	17109058	ID=MS.gene83052.t1.exon2;Parent=MS.gene83052.t1
chr1.4	CDS	17109058	17109210	17109058	ID=cds.MS.gene83052.t1;Parent=MS.gene83052.t1
chr1.4	exon	17108569	17108964	17108569	ID=MS.gene83052.t1.exon3;Parent=MS.gene83052.t1
chr1.4	CDS	17108569	17108964	17108569	ID=cds.MS.gene83052.t1;Parent=MS.gene83052.t1
chr1.4	exon	17108354	17108430	17108354	ID=MS.gene83052.t1.exon4;Parent=MS.gene83052.t1
chr1.4	CDS	17108354	17108430	17108354	ID=cds.MS.gene83052.t1;Parent=MS.gene83052.t1
chr1.4	exon	17106024	17107133	17106024	ID=MS.gene83052.t1.exon5;Parent=MS.gene83052.t1
chr1.4	CDS	17106024	17107133	17106024	ID=cds.MS.gene83052.t1;Parent=MS.gene83052.t1

Gene Sequence

>MS.gene83052

ATGCCTGCGTCGTTGCAGAGAACGGCGCACTCGAGCACCAACTCCGGTGAGTTTCCGGCTGGGTTAAGGGTTCTTGTTGTTGATGATGACATCACTACGTTGAAGATAATTGAACAAATGTCTCTTCGCTGTCATTATCAAGGTTCGTTTTTTCATTTCTCCAAAGAATTTCGTAAAGTTAGTATTGTTAAGTCAAATTCACATTTTTGAAATGTTTGAAATTGAAAATTTTATGTTAATTGATGTCCTGTTCATTGAAAGTCGATTTTTATTTTCCATGGACTCTTACAATCTGCGAGTGGAGTCTACGAACCCTACACGACTCTGTGTAGACTTGCGAGTTTGACAACCTTATTTATGGCGATGAAGACTAGACAGTGGATTAAATTAGCTTATAAGGTGAAAGTTTATTAATGAAGTTGAAACGTTAGATTAATAAAAGGAAACATCGGCATTAGTGCTAATAGGAAAGAAGGAAAAGCTATATATCAACATGAGTACATATAAAGAAACAAACGAGGTTTTAAATGAAGCTGCTGAGGACGAATGTGAATGTGTCAACGAAAGTGTTGATTCGCTTAGTGTAAAAGGCTATGTTGAGGTCGAAGCTCACTTTTGGATTGATGTCTTGGGAATTTTTTAGTTACTATAGTTGTTGACATGCACGTTGAAGGCAAGGACAACTGCCATATATGCGACATGATGACAGATAGGTAGTAACAATGTAGCAGCATCTATAAATAAGAGTTTTTATGATGGAGAACAAGTTGATAACTTGAAATCTGAACTCCAACTCCTAAACTGGAAATGGATTAATGCTCTTAGAGATCAAGTACACCATCATTTGTCGACTTCCTGTAATTTTGCTTTAAATCAAGTTAAATATTCAAAGTCCTGTAATCATCTTTATTTGTTCTGATTGTTTTATGCTATTGCCTTTACTGCTGCTTTCCATTGCCACTTTCTCATTTGCATCATTCAATTTTTTCTTTCAAATTATTACTAAAACTTACTTGGCGCAACGGTAAAGTGGTTATCATGTGACTGAAATGTCATGGGTTCAAGTCCTAGAAACAACCTCTTGTGTAAAAACAGGGTAAGGCTGCGTATAATACACCAAATGGTGGGACCCCTTCCCGGACCCTGCGTATGCGGGAGCTTTGTGCACATGGCTGCCCTTTTTTATTACTAAACCTTACTTCAAACGTGCATTCTTAAATATATTTACTTACTCAACCATCCCAATTCAAATGCCATTTGCTTTTATGTCTTTAGTTTCCTTGCAATTATCTTCTTTTCCATTTACATTTTCATTCAACTTATCTTTCTGCAATTTAAAATCTTTCCTTTACTCTTAGTGTCATTTAACAGTTTTCACTGTAATTTGTAGTCATTTAAAGTCTTTTCTTTTGTTTGTATGAATTTTCCTTCATTCTTTTGTTCTATGTTCTGTGCATGTTTACACATTGGTCTTTACTCTTAACGCCTGTTTGCGTTTTTTCAATTCGATGTTTAATATCTATGTCCTCAACATAATATCAATCAAGAATGGTGTTCAAATTGTTTTTTAAAACCATCATTTATGAATTAGATTACCTTATAACTTGTTAGACTTCACCATTTACTGATTAAATAATTATTTGTTGTTGGATTTGGTATGTGTCTCATTAAACCGAAATCACGGTACACAACTCAATGCTTGTTTTTGAAGTTAACCATACTTGACTTAGGAGGAGGGTTAAAAGGAGGGTTTTTATTTCAAGTAATAATAGCTAGTTTTTATTTCACCATTTAATGTTTATTCATTTATTTATTTGAAGGGTTAAATATTTTTTTCTTTGCCTTTATACATTTTGGTAAATTTCTATTTTGGTTCCTATTAAAATTTAGGCTTCCTTAGGTGGACACGATATGACATCGATAAATCGAATAAGAGAGTTGAATAACAGGAGGATCAAATATGAACACAATATATGTAATGTGCACAACACAATCCACCAAATAGTATATGTTACCCTATCTTATGTTAGAGGCAGATTAGATAATGACATGATGTAAATTATAATTATACAATAAAATCACCCTTATGTTAAGTATTGGTAGAGCGTGATCAGTTGTGGAGGTTTTAGATTTTTGAGAAATGATATCTGTACAACCAATTTGTGACAACTTTTGTGACAACTTTCTCTGTCATACTCACATTATGTTTTTACTTTCTCTCTCTCTATTGCTTTGGTTTTTGTGCTAATATCTACTTTTCTTTGTAAATCTATGGTTGTCCCATAAGTTGTCAAGCAAATGGCTGTTCAAATAACACACCTCTAGATTTCTATATTTAGCCCAGCTCATCTTTACAAAACCGGCTTGTAAGGTGAAGGATGCCCCTCTAAATTATTTCAGTCATTATCTCTATTCTATGCGAGACTTGAGCTTTTCCAATAGGTGTTGACAGCTACAAACTGTGTGGGGTGGTAGAAGTAATGTTTGGAAATATCAAGTTTGCAATGGAGGTTGATTTTGAATATCTGTGGTGGTGGAGGGTCCTAAGTGGCAATTAAAATGGTGGAGGGTGCAGAGCAGCAGTTGCAAATGATGCTAGGTGGTGATGACAATTATAGAGGGTATTGAGCAATGATAGTGGAAGGTGTCAGGCGGAGGTGATCTGAGAGGGTGATAGGTGGCATATGTCGTCGTGGGGGAGGGAGGGTAAAGGAAGAAAGCGTGGGTCATTGGTAAGGGTGAAAAAGGGAAAAACTCTACACTATTATGTTTATTTCTAATTTAATTTAATGGCATTAAATTTGCAATTGACTAACATAGATATGGTAGACCTAGTTCGTGTGTGGATGGGTTACTGTAAATTCGAATAATATATTTTCTTCTTAATCTGTAATATATTTTTATTTTTATTTATCCTGCAGTCACTACATGCTCTGAGGCTACTGTTGCTTTGAAAATTCTGCGAGAAAGGAAAGGCTGTTTTGATGTTGTGCTGAGTGATGTTCATATGCCAGACATGGATGGCTATAAACTCCTTGAACATGTTGGGTTGGAAATGGACCTTCCTGTTATTAGTAAGAACTGGTCTCCTGTTCTTGTTCGTTGAATTAATTTAGTGTACTTGTAATGCTTAATACTGAAAACTGGTTATGTTCTGCACGGTGCAGTGATGTCTGTTGATGATAGGACAAGTACTGTCATGAAGGGAATTAGACACGGGGCTTGTGATTATTTTATTAAGCCTGTACGGATGGAAGAACTAAGGAATATATGGCAGCATGTTGCTAGGAAAATTTTGAATGAAAATAAGGAACATGATAATTCTGGCAGCATAGAAGATAATGATCGCAATCCACGGGGGAATGATGATAATGACAACACTTCTTCTGTTGCTGGTGCAACAAAAGGAATAGTAAAAGAACAAAAAAAGAGGAGCAATTTAAAAGATGAAGATGTTGAGTTGGAGAATGACGATCCATCTACATCTAAGAAGCCTCGTGTAGTGTGGTCAGTAGAACTGCATCAACAATTTGTCAGTGCTGTAAATCAACTAGGACTTGACAGTAAGAATTTCCAACTTTTTTTTTCTTTCTATTTCTTTTGCTTTTGCATTCAATGACGGAGACTTCTTTGGATTTAATAAGCATAAAGCGTTTTAAGAATTTATTGCTTATCATTTATTTGTTATTCTTGTATTTCAGAGGCCGTGCCAAAGAGAATACTTGAAATGATGAATGTCCCTGGTCTAACAAGAGAAAATGTTGCAAGTCATTTGCAGGTATTAGTCCAATTTGTGAAGTCATTGCTTACAATCTTCCTTGAGAACCATCTTCATTATTTGATGTACAATAGTTGAACTTGTAACTGACCTTTAGTCTTTTTCTTCTTCTTCAATTTTCATATCTTATTATGTGCTATTTTTCATATTTGGCCTTCAGGTTACCTTTCTTTTATTAAATGCTAGATATACGGTTTTCTACTACCTTGATGGGAATTTCATACGTTGTCTTGACCTTTTTGTTCCAATTGTTGAATGTTCTGGGTATAAATGAACACTGCGTAGACTTGGGCCTGATTTGACTGGTAAAAATCACATCAATCTGTTGTTAGGCTAGTTTTTGTATCTGTTTATATCCTATCATCCATGCTACCACCTTAGTAACTCTTGTAAAGAGCCTGTGTCAAAACTATCAGTGCAACATGGAGTTGCTGTGTTTTGTCACTCCTTGATAGGATATTCACCAAAAAGAATCTATTTTCATGATTAGTTGTTCGTAATATTGATGTGTCAACAAGAGTAGATGTATCTATGAATGTTTTGTATGTCACAGAGAGGGTCTACAAGTTCAAAGTTGTTATGAAATAAAAGGCAATGAGCATTGATGAAAATGAAGAAGTTTAATTGTATCTTTTTATTATTCCCATTTTGGAGGGGGGGGTTAAAACTAAAGCTGTTGGGGTTTCATGGTGGTGTTATTTTGGGTTTTAAATATTAGGAAGAAATAATATGTTGAAAATTGATTCCAGTTTAGATGAGAATCTCTATTGGGTCATGCGGAAGGACAGCCTGAAAAATCATTACAGAAAGTTAATACCGTTATTGATTTGATTCAAGTTGTCCTATACTAATTTAAATACTGTTATAAATATACGACATTGGTAAAGGGAGTATCCTGGAATGAGACTAGTGATGTATGAGAAAGGTTAGGTTGATCAAGAATAATGACATGAACCAAGTGATAGAAAGAACTTGTCACTTTCTTATTAAAAATAATTAGATGTTAAGATTAAAAGGACAAAGATATGTGGTAATGAATATAGTCTGTTATTTAGTGATATATGTCGTTATATATGTATGTTTTCGAACGGGTGAGAAATATTATCTGCTCATATTCAAGTTTTTGATATTTTTGCAAACTGAGTCACTAGATTGTAGATAAATGAAATTGTGTTTTGTAGTGCTTTACTGTGGTTAACATTACCATTGTGAATTGGCAGAAATTTAGACTTTATTTGAAGAGGTTAAGTGTGGTGGCGCATCAACAGAATGGGATGTTAAACACAGTTCATGGGACTATAGAATCCAAGCTGGCTGCTACTGGAAGATATGACATACAGGCTTTGGCTGGTTCTGGCCACGTTTCCCCTGAAACACTTGCAGCTCTTCAGGCGGAGCTCTTAGGTCACCCGGCAACTAACATAATGCCTACAGTGGACCGGACTGCACTAATGCATGCATCTGTACAGGGGACAAAACATTCTCGTGCTGATGATCATGCCTACAGCCCTTTCGACATCGTCAATAATTTCCCTCAGTCCATCTTAAAAGTAGATGAGTCATCATCAGTATATGGAGCATGGCCGCCGTCTAGTACACTCGGGTCAATCTCAAGTGGAAGGTTAGGCGTGCAGAATAGTAACACACTGGTTGATATATTGCAGCACCAACAACGGCACCAGCATCAGCAAAAACAACAGCAGTCTCAGATGCATGATCAAAATCGATCAATCAATGTTCAACCATCTTGCTTGGTGGTTCCTGCTCAATCTTCTAATACCTTCCAGGCAGTAAATAGTGTTGCTTCTGTCAACAAGGATAGCAGTTTTGGCAGAAATGCCATTATTGATTATAGTCAATCATCACAAAAATCAAATACTTCATCGAGTTCATCTCAATATCCTGGCGGAGACACAAGAGCTACCTCCATTTCTCCTCAAATATCCTCTTTTTCAGTAGGATCCATAAATAACAATATTCAGCAGATTCAAAACTCAACTTTAACATTTGGTGCTGCTAGACCATTGCCTAGCCTTCTCCCCTTGACACTTAGACAAGTTCCATATGATATTAAATCCAGCGATTCACTTGATGAAGTATGTCTTAGAAATCTTGGATTTGTTGGAAAAGGTAACTGCATACCAAGTTTTGAAAATAAAATCCAATCATCTGCAAATGATTTTAGTCAAATGAAAGTATTCATGGCTAGCAATGGTAACACAGTGAAGGAGGAACCAAAGGAGGAACCGAGTCATATCAGATATCCAAATGCGAGCCACCCAGTTCTACAGAATTATCCATCTCATGATCATTCAAGTGCATTCACTTAA

Protein sequence

>MS.gene83052.t1

MPASLQRTAHSSTNSGEFPAGLRVLVVDDDITTLKIIEQMSLRCHYQVTTCSEATVALKILRERKGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSVDDRTSTVMKGIRHGACDYFIKPVRMEELRNIWQHVARKILNENKEHDNSGSIEDNDRNPRGNDDNDNTSSVAGATKGIVKEQKKRSNLKDEDVELENDDPSTSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILEMMNVPGLTRENVASHLQKFRLYLKRLSVVAHQQNGMLNTVHGTIESKLAATGRYDIQALAGSGHVSPETLAALQAELLGHPATNIMPTVDRTALMHASVQGTKHSRADDHAYSPFDIVNNFPQSILKVDESSSVYGAWPPSSTLGSISSGRLGVQNSNTLVDILQHQQRHQHQQKQQQSQMHDQNRSINVQPSCLVVPAQSSNTFQAVNSVASVNKDSSFGRNAIIDYSQSSQKSNTSSSSSQYPGGDTRATSISPQISSFSVGSINNNIQQIQNSTLTFGAARPLPSLLPLTLRQVPYDIKSSDSLDEVCLRNLGFVGKGNCIPSFENKIQSSANDFSQMKVFMASNGNTVKEEPKEEPSHIRYPNASHPVLQNYPSHDHSSAFT