Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83159.t1 | XP_003628092.1 | 92.2 | 205 | 14 | 1 | 1 | 203 | 1 | 205 | 2.00E-81 | 312 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83159.t1 | Q06672 | 31.0 | 100 | 69 | 0 | 15 | 114 | 32 | 131 | 4.1e-06 | 53.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83159.t1 | G7LJ82 | 92.2 | 205 | 14 | 1 | 1 | 203 | 1 | 205 | 1.5e-81 | 312.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene049387 | MS.gene83159 | PPI |
MS.gene38035 | MS.gene83159 | PPI |
MS.gene059340 | MS.gene83159 | PPI |
MS.gene83159 | MS.gene020871 | PPI |
MS.gene83159 | MS.gene81244 | PPI |
MS.gene38222 | MS.gene83159 | PPI |
MS.gene013415 | MS.gene83159 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83159.t1 | MTR_8g043450 | 92.195 | 205 | 14 | 1 | 1 | 203 | 1 | 205 | 1.33e-136 | 380 |
MS.gene83159.t1 | MTR_8g043430 | 42.775 | 173 | 92 | 4 | 1 | 170 | 1 | 169 | 8.48e-37 | 126 |
MS.gene83159.t1 | MTR_1g035200 | 52.273 | 132 | 60 | 2 | 1 | 132 | 91 | 219 | 4.76e-35 | 124 |
MS.gene83159.t1 | MTR_8g043410 | 42.748 | 131 | 74 | 1 | 1 | 130 | 1 | 131 | 2.33e-31 | 111 |
MS.gene83159.t1 | MTR_5g006380 | 48.148 | 81 | 41 | 1 | 17 | 96 | 18 | 98 | 1.50e-18 | 78.2 |
MS.gene83159.t1 | MTR_7g086210 | 34.579 | 107 | 67 | 2 | 12 | 116 | 252 | 357 | 4.74e-13 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83159.t1 | AT5G27990 | 39.791 | 191 | 93 | 6 | 15 | 204 | 15 | 184 | 6.56e-28 | 104 |
MS.gene83159.t1 | AT5G27990 | 39.791 | 191 | 93 | 6 | 15 | 204 | 15 | 184 | 6.56e-28 | 104 |
MS.gene83159.t1 | AT3G22510 | 39.806 | 103 | 57 | 3 | 10 | 108 | 23 | 124 | 1.37e-16 | 73.2 |
Find 53 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCAAGTTAGATTCGGATTT+TGG | 0.118567 | 8.2:-57996092 | None:intergenic |
CCCATTAACTGCCTTGTTCA+TGG | 0.257049 | 8.2:-57996117 | None:intergenic |
GGTGGTCCTTGTAGCTTGTT+AGG | 0.297509 | 8.2:-57992834 | None:intergenic |
CGTAATCCAGCTGCTTATTC+TGG | 0.316707 | 8.2:+57994308 | MS.gene83159:CDS |
TCCATGAACAAGGCAGTTAA+TGG | 0.322486 | 8.2:+57996116 | MS.gene83159:CDS |
CAAGCATTCACCGAAGGAAT+TGG | 0.332888 | 8.2:+57992861 | MS.gene83159:CDS |
ATGTACGGAGAATGTTTAGA+AGG | 0.404882 | 8.2:+57994248 | MS.gene83159:CDS |
CGGCGAGTTGGTGAGCTTTG+AGG | 0.405818 | 8.2:-57992953 | None:intergenic |
CATGGAATTCAAGTTAGATT+CGG | 0.413868 | 8.2:-57996099 | None:intergenic |
ATTCTCCGTACATAATCATT+AGG | 0.419425 | 8.2:-57994238 | None:intergenic |
TGAAGATGGTAGCGATGAAC+AGG | 0.428791 | 8.2:+57993185 | MS.gene83159:CDS |
TGCTTATTCTGGTGTGCAAA+AGG | 0.442639 | 8.2:+57994319 | MS.gene83159:CDS |
TTCCTTCGGTGAATGCTTGA+AGG | 0.447098 | 8.2:-57992857 | None:intergenic |
ATTCACCGAAGGAATTGGTT+TGG | 0.452171 | 8.2:+57992866 | MS.gene83159:CDS |
TCGCCGCTGATGTCCTTGCT+TGG | 0.458421 | 8.2:+57992970 | MS.gene83159:CDS |
AATCCAGGTGAAGGAGATGA+TGG | 0.464837 | 8.2:+57996167 | MS.gene83159:CDS |
CCATGAACAAGGCAGTTAAT+GGG | 0.478078 | 8.2:+57996117 | MS.gene83159:CDS |
CTTGAAAACTTACTCTATCA+AGG | 0.485832 | 8.2:+57993138 | MS.gene83159:CDS |
CAAAACCAAACCAATTCCTT+CGG | 0.487339 | 8.2:-57992871 | None:intergenic |
GGGTCTCAGCCGGAAAATCC+AGG | 0.517000 | 8.2:+57996137 | MS.gene83159:CDS |
ATGCTGTGCTAGATTGTGAA+TGG | 0.520448 | 8.2:+57995996 | MS.gene83159:intron |
TGCACACCAGAATAAGCAGC+TGG | 0.521274 | 8.2:-57994314 | None:intergenic |
TCACCTGGATTATCCTCACC+TGG | 0.521450 | 8.2:-57996155 | None:intergenic |
CATCCATCATCTCCTTCACC+TGG | 0.522549 | 8.2:-57996170 | None:intergenic |
TCCTTCGGTGAATGCTTGAA+GGG | 0.524962 | 8.2:-57992856 | None:intergenic |
GCCGTTGAAAATGAGTGGGC+TGG | 0.531900 | 8.2:+57992918 | MS.gene83159:CDS |
GGCAGTTAATGGGTCTCAGC+CGG | 0.532626 | 8.2:+57996127 | MS.gene83159:CDS |
CAAGGACATCAGCGGCGAGT+TGG | 0.532997 | 8.2:-57992965 | None:intergenic |
CGGTTCGGAGCGCCGACCAA+CGG | 0.534881 | 8.2:-57992896 | None:intergenic |
GTCAATATAGTGATTGAAGA+TGG | 0.545813 | 8.2:+57993171 | MS.gene83159:CDS |
TGGATTGAGTGAACCAAGCA+AGG | 0.551697 | 8.2:-57992983 | None:intergenic |
TGCTAGATTGTGAATGGCAA+TGG | 0.553024 | 8.2:+57996002 | MS.gene83159:intron |
AATCCAGGTGAGGATAATCC+AGG | 0.559977 | 8.2:+57996152 | MS.gene83159:CDS |
GGACGATAATTCAGCAAACA+TGG | 0.569749 | 8.2:+57996058 | MS.gene83159:CDS |
GAAGACCTAATGATTATGTA+CGG | 0.576974 | 8.2:+57994233 | MS.gene83159:CDS |
TCGGTGAATGCTTGAAGGGG+TGG | 0.580683 | 8.2:-57992852 | None:intergenic |
TAATTCAGCAAACATGGATG+TGG | 0.582482 | 8.2:+57996064 | MS.gene83159:CDS |
AAAACTTACTCTATCAAGGA+GGG | 0.590140 | 8.2:+57993142 | MS.gene83159:CDS |
GCTTGGTTCACTCAATCCAA+AGG | 0.593121 | 8.2:+57992987 | MS.gene83159:CDS |
ATGGATGGTCTGTTGTCTCA+AGG | 0.606611 | 8.2:+57996186 | MS.gene83159:CDS |
GAACCGCCGTTGAAAATGAG+TGG | 0.611433 | 8.2:+57992913 | MS.gene83159:CDS |
GGTGAGGATAATCCAGGTGA+AGG | 0.612481 | 8.2:+57996158 | MS.gene83159:CDS |
AACCGCCGTTGAAAATGAGT+GGG | 0.615075 | 8.2:+57992914 | MS.gene83159:CDS |
CAGGTGAAGGAGATGATGGA+TGG | 0.615703 | 8.2:+57996171 | MS.gene83159:CDS |
ACGAATCCTAACAAGCTACA+AGG | 0.631057 | 8.2:+57992828 | MS.gene83159:CDS |
CCTTCGGTGAATGCTTGAAG+GGG | 0.635643 | 8.2:-57992855 | None:intergenic |
TAACTTGAATTCCATGAACA+AGG | 0.636334 | 8.2:+57996106 | MS.gene83159:CDS |
CCCCTTCAAGCATTCACCGA+AGG | 0.638533 | 8.2:+57992855 | MS.gene83159:CDS |
GAAAACTTACTCTATCAAGG+AGG | 0.642840 | 8.2:+57993141 | MS.gene83159:CDS |
GAACCAAGCAAGGACATCAG+CGG | 0.665981 | 8.2:-57992973 | None:intergenic |
TCAGCCGGAAAATCCAGGTG+AGG | 0.693925 | 8.2:+57996142 | MS.gene83159:CDS |
GATGGTCTGTTGTCTCAAGG+AGG | 0.721375 | 8.2:+57996189 | MS.gene83159:CDS |
TGATTCTGATGATAACACTG+AGG | 0.835231 | 8.2:+57996037 | MS.gene83159:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATAAAACTATTAGAATTT+GGG | + | chr8.2:57993441-57993460 | MS.gene83159:intron | 10.0% |
!!! | TATGATATTATTATTTTGTT+TGG | + | chr8.2:57995380-57995399 | MS.gene83159:intron | 10.0% |
!!! | TTAAATTATGTATTTGTTTT+TGG | + | chr8.2:57993228-57993247 | MS.gene83159:intron | 10.0% |
!! | GATATAAAACTATTAGAATT+TGG | + | chr8.2:57993440-57993459 | MS.gene83159:intron | 15.0% |
!!! | ATATGTTAATTTAGCATTTT+TGG | + | chr8.2:57995892-57995911 | MS.gene83159:intron | 15.0% |
!! | AAAAAGAAATGATCAACTTT+AGG | + | chr8.2:57995300-57995319 | MS.gene83159:intron | 20.0% |
!! | AAAAGAAATGATCAACTTTA+GGG | + | chr8.2:57995301-57995320 | MS.gene83159:intron | 20.0% |
!! | AATTTGGAAATTAGTCAAAT+GGG | + | chr8.2:57993782-57993801 | MS.gene83159:intron | 20.0% |
!! | ATTTGCAATATCAAATTTGT+AGG | + | chr8.2:57994393-57994412 | MS.gene83159:intron | 20.0% |
!! | CAATTACACAATGTTATATT+AGG | - | chr8.2:57995743-57995762 | None:intergenic | 20.0% |
!! | CAGGAATTAAAAAGAAATAA+TGG | - | chr8.2:57995643-57995662 | None:intergenic | 20.0% |
!! | GATTTAAACTGTGAATAATT+TGG | + | chr8.2:57993292-57993311 | MS.gene83159:intron | 20.0% |
!! | GCTTAAACAATTAAAAAAAC+AGG | - | chr8.2:57993035-57993054 | None:intergenic | 20.0% |
!! | TTTGCAATATCAAATTTGTA+GGG | + | chr8.2:57994394-57994413 | MS.gene83159:intron | 20.0% |
!!! | AATTTAGCATTTTTGGTTTA+TGG | + | chr8.2:57995899-57995918 | MS.gene83159:intron | 20.0% |
!!! | CATTATTTCTTTTTAATTCC+TGG | + | chr8.2:57995641-57995660 | MS.gene83159:intron | 20.0% |
!!! | CTCTTTTGTTAGTAATTTTA+GGG | + | chr8.2:57993890-57993909 | MS.gene83159:intron | 20.0% |
!!! | GTTTAAAATTATGTTGACAA+AGG | - | chr8.2:57994947-57994966 | None:intergenic | 20.0% |
!!! | TATTATTTTGTTTGGCTTTT+TGG | + | chr8.2:57995388-57995407 | MS.gene83159:intron | 20.0% |
!!! | TCTTTTGTTAGTAATTTTAG+GGG | + | chr8.2:57993891-57993910 | MS.gene83159:intron | 20.0% |
!!! | TTGATCATTTCTTTTTAACA+CGG | - | chr8.2:57995296-57995315 | None:intergenic | 20.0% |
!!! | TTGCAATTTTAACATGTTTA+GGG | - | chr8.2:57993855-57993874 | None:intergenic | 20.0% |
!!! | TTTGCAATTTTAACATGTTT+AGG | - | chr8.2:57993856-57993875 | None:intergenic | 20.0% |
!!! | TTTTTGGAATATTACTTTAC+TGG | + | chr8.2:57993244-57993263 | MS.gene83159:intron | 20.0% |
! | AAAACTATTAGAATTTGGGT+TGG | + | chr8.2:57993445-57993464 | MS.gene83159:intron | 25.0% |
! | AAACAATTTCTCATCATTAG+AGG | - | chr8.2:57994891-57994910 | None:intergenic | 25.0% |
! | AAATAATGGCTTAAAAACTG+GGG | - | chr8.2:57995629-57995648 | None:intergenic | 25.0% |
! | ACATCAAACCATTAATTAGA+TGG | + | chr8.2:57995699-57995718 | MS.gene83159:intron | 25.0% |
! | AGAAATAATGGCTTAAAAAC+TGG | - | chr8.2:57995631-57995650 | None:intergenic | 25.0% |
! | ATTTCTCTGCATTAGAAATT+AGG | + | chr8.2:57994761-57994780 | MS.gene83159:intron | 25.0% |
! | CAATTTGGAAATTAGTCAAA+TGG | + | chr8.2:57993781-57993800 | MS.gene83159:intron | 25.0% |
! | CCTAAAATTACTAACAAAAG+AGG | - | chr8.2:57993892-57993911 | None:intergenic | 25.0% |
! | CTAATTCAACCTTATAAAAC+CGG | + | chr8.2:57993470-57993489 | MS.gene83159:intron | 25.0% |
! | GAAATAATGGCTTAAAAACT+GGG | - | chr8.2:57995630-57995649 | None:intergenic | 25.0% |
! | GAACATTTCCATCTAATTAA+TGG | - | chr8.2:57995710-57995729 | None:intergenic | 25.0% |
! | GTGATTAATTACAATACCTT+TGG | - | chr8.2:57993006-57993025 | None:intergenic | 25.0% |
! | TCTAATGATGAGAAATTGTT+TGG | + | chr8.2:57994890-57994909 | MS.gene83159:intron | 25.0% |
! | TTGTGTAATTGTAACTTTGA+TGG | + | chr8.2:57995752-57995771 | MS.gene83159:intron | 25.0% |
!! | AAACTATTAGAATTTGGGTT+GGG | + | chr8.2:57993446-57993465 | MS.gene83159:intron | 25.0% |
!! | ATTTTATAAGAGCAACACTT+TGG | - | chr8.2:57993349-57993368 | None:intergenic | 25.0% |
!! | CCAAATTGTTATTAGAAGAA+GGG | - | chr8.2:57993769-57993788 | None:intergenic | 25.0% |
!! | CCTCTTTTGTTAGTAATTTT+AGG | + | chr8.2:57993889-57993908 | MS.gene83159:intron | 25.0% |
!! | GGATATTTAGGTTTATATAG+AGG | + | chr8.2:57995409-57995428 | MS.gene83159:intron | 25.0% |
!! | GTGTTGCTCTTATAAAATTA+CGG | + | chr8.2:57993351-57993370 | MS.gene83159:intron | 25.0% |
!! | TATGATACCATATAGCATTT+TGG | + | chr8.2:57993669-57993688 | MS.gene83159:intron | 25.0% |
!! | TCCAAATTGTTATTAGAAGA+AGG | - | chr8.2:57993770-57993789 | None:intergenic | 25.0% |
!!! | AGGATATTTCAGGTTTTATT+AGG | + | chr8.2:57995510-57995529 | MS.gene83159:intron | 25.0% |
!!! | TAAACAAAAGCATTGATGTT+TGG | + | chr8.2:57993724-57993743 | MS.gene83159:intron | 25.0% |
AAAACTTACTCTATCAAGGA+GGG | + | chr8.2:57993142-57993161 | MS.gene83159:CDS | 30.0% | |
AAATTAAGGCACAATGCATT+TGG | + | chr8.2:57994343-57994362 | MS.gene83159:intron | 30.0% | |
AACACATTCAAGGACTAAAT+TGG | + | chr8.2:57993933-57993952 | MS.gene83159:intron | 30.0% | |
ACACACACACACAAATTTAT+TGG | + | chr8.2:57994698-57994717 | MS.gene83159:intron | 30.0% | |
ATTAATGGTTTGATGTAAGC+TGG | - | chr8.2:57995695-57995714 | None:intergenic | 30.0% | |
ATTCTCCGTACATAATCATT+AGG | - | chr8.2:57994241-57994260 | None:intergenic | 30.0% | |
CACAAATTCTATTTGACCAA+GGG | - | chr8.2:57994099-57994118 | None:intergenic | 30.0% | |
CCACTTATAAACAATTGTTC+AGG | + | chr8.2:57993524-57993543 | MS.gene83159:intron | 30.0% | |
CCCTTCTTCTAATAACAATT+TGG | + | chr8.2:57993766-57993785 | MS.gene83159:intron | 30.0% | |
CCTGAACAATTGTTTATAAG+TGG | - | chr8.2:57993527-57993546 | None:intergenic | 30.0% | |
CTGAAATATCCTTTAAGCAA+GGG | - | chr8.2:57995502-57995521 | None:intergenic | 30.0% | |
CTTGAAAACTTACTCTATCA+AGG | + | chr8.2:57993138-57993157 | MS.gene83159:CDS | 30.0% | |
GAAGACCTAATGATTATGTA+CGG | + | chr8.2:57994233-57994252 | MS.gene83159:CDS | 30.0% | |
GGATTTCAATTTCTACATGA+TGG | + | chr8.2:57994436-57994455 | MS.gene83159:intron | 30.0% | |
GTACATGTTTGTGATAATAC+AGG | + | chr8.2:57994205-57994224 | MS.gene83159:intron | 30.0% | |
GTCAATATAGTGATTGAAGA+TGG | + | chr8.2:57993171-57993190 | MS.gene83159:CDS | 30.0% | |
TAACTTGAATTCCATGAACA+AGG | + | chr8.2:57996106-57996125 | MS.gene83159:CDS | 30.0% | |
TATCACTATAACTGCAATTG+AGG | - | chr8.2:57993424-57993443 | None:intergenic | 30.0% | |
TCTTGACAGCAAAAATTTAG+AGG | + | chr8.2:57995432-57995451 | MS.gene83159:intron | 30.0% | |
! | AGTATTTGAGTTTGAGTTTC+CGG | + | chr8.2:57995472-57995491 | MS.gene83159:intron | 30.0% |
! | CAAGTATTTTCCTACAAGTT+GGG | - | chr8.2:57995792-57995811 | None:intergenic | 30.0% |
! | CATGGAATTCAAGTTAGATT+CGG | - | chr8.2:57996102-57996121 | None:intergenic | 30.0% |
! | CTTGATAGAGTAAGTTTTCA+AGG | - | chr8.2:57993140-57993159 | None:intergenic | 30.0% |
! | GGTATGTGTTTGATTGATTT+AGG | + | chr8.2:57994415-57994434 | MS.gene83159:intron | 30.0% |
! | TCTACATGATGGCATATTTT+AGG | + | chr8.2:57994447-57994466 | MS.gene83159:intron | 30.0% |
!! | ATACCATATAGCATTTTGGT+TGG | + | chr8.2:57993673-57993692 | MS.gene83159:intron | 30.0% |
!! | CGGTTTTATAAGGTTGAATT+AGG | - | chr8.2:57993472-57993491 | None:intergenic | 30.0% |
!! | TTCAAGTTAGATTCGGATTT+TGG | - | chr8.2:57996095-57996114 | None:intergenic | 30.0% |
!!! | GTTTGGCTTTTTGGATATTT+AGG | + | chr8.2:57995397-57995416 | MS.gene83159:intron | 30.0% |
!!! | TACCATATAGCATTTTGGTT+GGG | + | chr8.2:57993674-57993693 | MS.gene83159:intron | 30.0% |
!!! | TATTTCAGGTTTTATTAGGC+CGG | + | chr8.2:57995514-57995533 | MS.gene83159:intron | 30.0% |
ACTCATGACATGTGTAATCA+AGG | - | chr8.2:57995937-57995956 | None:intergenic | 35.0% | |
AGGGTCAATGATCTCAATTT+AGG | - | chr8.2:57993750-57993769 | None:intergenic | 35.0% | |
ATGTACGGAGAATGTTTAGA+AGG | + | chr8.2:57994248-57994267 | MS.gene83159:CDS | 35.0% | |
CAAAACCAAACCAATTCCTT+CGG | - | chr8.2:57992874-57992893 | None:intergenic | 35.0% | |
CAACAGCTAATGGAGATATT+TGG | - | chr8.2:57995152-57995171 | None:intergenic | 35.0% | |
CCAACTTGTAGGAAAATACT+TGG | + | chr8.2:57995790-57995809 | MS.gene83159:intron | 35.0% | |
CCTGAAATATCCTTTAAGCA+AGG | - | chr8.2:57995503-57995522 | None:intergenic | 35.0% | |
CCTTATAAAACCGGAATGTA+AGG | + | chr8.2:57993479-57993498 | MS.gene83159:intron | 35.0% | |
CCTTGCTTAAAGGATATTTC+AGG | + | chr8.2:57995500-57995519 | MS.gene83159:intron | 35.0% | |
GAAAACTTACTCTATCAAGG+AGG | + | chr8.2:57993141-57993160 | MS.gene83159:CDS | 35.0% | |
GACAGCAAGTTACACTTATA+GGG | + | chr8.2:57994056-57994075 | MS.gene83159:intron | 35.0% | |
GCACAAATTCTATTTGACCA+AGG | - | chr8.2:57994100-57994119 | None:intergenic | 35.0% | |
GCATAAACTCACAAAAAGCA+CGG | - | chr8.2:57994796-57994815 | None:intergenic | 35.0% | |
GCTAATGTATCAACAGCTAA+TGG | - | chr8.2:57995162-57995181 | None:intergenic | 35.0% | |
GGTGTGCAAAAGGTAAATTA+AGG | + | chr8.2:57994329-57994348 | MS.gene83159:intron | 35.0% | |
GTCAGGAAATCAACTACAAT+AGG | - | chr8.2:57995837-57995856 | None:intergenic | 35.0% | |
GTCTCAAGGAGGAAAAATAA+GGG | + | chr8.2:57996200-57996219 | MS.gene83159:CDS | 35.0% | |
GTTGATACATTAGCTGTTGA+CGG | + | chr8.2:57995168-57995187 | MS.gene83159:intron | 35.0% | |
GTTTAGGGACTATATTGACA+GGG | - | chr8.2:57993840-57993859 | None:intergenic | 35.0% | |
TAATTCAGCAAACATGGATG+TGG | + | chr8.2:57996064-57996083 | MS.gene83159:CDS | 35.0% | |
TGACAGCAAGTTACACTTAT+AGG | + | chr8.2:57994055-57994074 | MS.gene83159:intron | 35.0% | |
TGATTCTGATGATAACACTG+AGG | + | chr8.2:57996037-57996056 | MS.gene83159:CDS | 35.0% | |
TGCAATTGAGGAAACATTTG+TGG | - | chr8.2:57993412-57993431 | None:intergenic | 35.0% | |
TGTCTCAAGGAGGAAAAATA+AGG | + | chr8.2:57996199-57996218 | MS.gene83159:CDS | 35.0% | |
TGTTTAGGGACTATATTGAC+AGG | - | chr8.2:57993841-57993860 | None:intergenic | 35.0% | |
TGTTTATGAGTCCCTTTGTA+AGG | - | chr8.2:57993710-57993729 | None:intergenic | 35.0% | |
TTAAAAACTGGGGAGAATGT+AGG | - | chr8.2:57995619-57995638 | None:intergenic | 35.0% | |
TTCTGAGTACTTCTCTTGAA+AGG | - | chr8.2:57995553-57995572 | None:intergenic | 35.0% | |
! | ATGTAAGCTGGTTTATTGAG+GGG | - | chr8.2:57995683-57995702 | None:intergenic | 35.0% |
! | CCAAGTATTTTCCTACAAGT+TGG | - | chr8.2:57995793-57995812 | None:intergenic | 35.0% |
! | GATGTAAGCTGGTTTATTGA+GGG | - | chr8.2:57995684-57995703 | None:intergenic | 35.0% |
! | TATAAAGCGTTTCTGTGAAG+AGG | - | chr8.2:57993110-57993129 | None:intergenic | 35.0% |
! | TATTTGGAGCATGATCTGAA+TGG | + | chr8.2:57993610-57993629 | MS.gene83159:intron | 35.0% |
! | TCCTTGAATGTGTTTTTCCT+CGG | - | chr8.2:57993927-57993946 | None:intergenic | 35.0% |
! | TGACAGTGGTATTGAAGAAT+CGG | + | chr8.2:57995212-57995231 | MS.gene83159:intron | 35.0% |
! | TGATGTAAGCTGGTTTATTG+AGG | - | chr8.2:57995685-57995704 | None:intergenic | 35.0% |
! | TTTGCCATTTCGATTCATTC+AGG | + | chr8.2:57994025-57994044 | MS.gene83159:intron | 35.0% |
!! | ACATGATGGCATATTTTAGG+AGG | + | chr8.2:57994450-57994469 | MS.gene83159:intron | 35.0% |
!! | AGTGTAACTTGCTGTCATAT+TGG | - | chr8.2:57994052-57994071 | None:intergenic | 35.0% |
!! | CACTTCTAGGACTAGATATT+TGG | + | chr8.2:57993594-57993613 | MS.gene83159:intron | 35.0% |
!! | CCTTACATTCCGGTTTTATA+AGG | - | chr8.2:57993482-57993501 | None:intergenic | 35.0% |
!! | GACACAAACTCTAGTCTTAT+TGG | + | chr8.2:57994577-57994596 | MS.gene83159:intron | 35.0% |
!! | TACTAACAAAAGAGGCACTA+GGG | - | chr8.2:57993884-57993903 | None:intergenic | 35.0% |
!! | TGTTTTTGTCAGTGAAAGCA+AGG | - | chr8.2:57994821-57994840 | None:intergenic | 35.0% |
!! | TTACTAACAAAAGAGGCACT+AGG | - | chr8.2:57993885-57993904 | None:intergenic | 35.0% |
!!! | ATTTCAGGTTTTATTAGGCC+GGG | + | chr8.2:57995515-57995534 | MS.gene83159:intron | 35.0% |
AAGGCACAATGCATTTGGAA+TGG | + | chr8.2:57994348-57994367 | MS.gene83159:intron | 40.0% | |
ACCGAGGAAAAACACATTCA+AGG | + | chr8.2:57993923-57993942 | MS.gene83159:intron | 40.0% | |
ACGAATCCTAACAAGCTACA+AGG | + | chr8.2:57992828-57992847 | MS.gene83159:CDS | 40.0% | |
AGGTGTGAAGGAATATCAGA+GGG | - | chr8.2:57995004-57995023 | None:intergenic | 40.0% | |
ATAGCCTATTCAAGATCCGT+TGG | - | chr8.2:57993652-57993671 | None:intergenic | 40.0% | |
ATGCTGTGCTAGATTGTGAA+TGG | + | chr8.2:57995996-57996015 | MS.gene83159:intron | 40.0% | |
ATTCACCGAAGGAATTGGTT+TGG | + | chr8.2:57992866-57992885 | MS.gene83159:CDS | 40.0% | |
ATTGTTTATAAGTGGCCGAG+TGG | - | chr8.2:57993519-57993538 | None:intergenic | 40.0% | |
CCATGAACAAGGCAGTTAAT+GGG | + | chr8.2:57996117-57996136 | MS.gene83159:CDS | 40.0% | |
GCCTAACTCATCCTTACAAA+GGG | + | chr8.2:57993696-57993715 | MS.gene83159:intron | 40.0% | |
GGACGATAATTCAGCAAACA+TGG | + | chr8.2:57996058-57996077 | MS.gene83159:CDS | 40.0% | |
TAAAACCGGAATGTAAGGTG+AGG | + | chr8.2:57993484-57993503 | MS.gene83159:intron | 40.0% | |
TAAGAGTCCCACATTTGAAG+TGG | - | chr8.2:57993555-57993574 | None:intergenic | 40.0% | |
TAATCAACAGCGTTCAATCC+CGG | - | chr8.2:57995338-57995357 | None:intergenic | 40.0% | |
TAGCCTATTCAAGATCCGTT+GGG | - | chr8.2:57993651-57993670 | None:intergenic | 40.0% | |
TATCTAGCGTACTCCAACAA+AGG | - | chr8.2:57994606-57994625 | None:intergenic | 40.0% | |
TCCATGAACAAGGCAGTTAA+TGG | + | chr8.2:57996116-57996135 | MS.gene83159:CDS | 40.0% | |
TCCCTTTGTAAGGATGAGTT+AGG | - | chr8.2:57993700-57993719 | None:intergenic | 40.0% | |
TGCTAGATTGTGAATGGCAA+TGG | + | chr8.2:57996002-57996021 | MS.gene83159:intron | 40.0% | |
TGCTTATTCTGGTGTGCAAA+AGG | + | chr8.2:57994319-57994338 | MS.gene83159:CDS | 40.0% | |
TGGTCCTGAATGAATCGAAA+TGG | - | chr8.2:57994032-57994051 | None:intergenic | 40.0% | |
TTGTTTATAAGTGGCCGAGT+GGG | - | chr8.2:57993518-57993537 | None:intergenic | 40.0% | |
! | CCAAAACAGTGATTTTCCCT+TGG | + | chr8.2:57994080-57994099 | MS.gene83159:intron | 40.0% |
! | CCAAGGGAAAATCACTGTTT+TGG | - | chr8.2:57994083-57994102 | None:intergenic | 40.0% |
! | CTGTCATTTAGTCTCATGTC+AGG | - | chr8.2:57995854-57995873 | None:intergenic | 40.0% |
! | GTCTTATTGGCATCCTTTGT+TGG | + | chr8.2:57994590-57994609 | MS.gene83159:intron | 40.0% |
! | TTATCCTCACCTGGATTTTC+CGG | - | chr8.2:57996149-57996168 | None:intergenic | 40.0% |
!! | TAGAGGCTTTTGATGACTCA+CGG | + | chr8.2:57995449-57995468 | MS.gene83159:intron | 40.0% |
!! | TATTTTCCTACAAGTTGGGC+TGG | - | chr8.2:57995788-57995807 | None:intergenic | 40.0% |
!!! | TTGGTTTGGTTTTGAACCGT+TGG | + | chr8.2:57992880-57992899 | MS.gene83159:CDS | 40.0% |
!!! | TTTGGTTTTGAACCGTTGGT+CGG | + | chr8.2:57992884-57992903 | MS.gene83159:CDS | 40.0% |
AAACTGGGGAGAATGTAGGA+AGG | - | chr8.2:57995615-57995634 | None:intergenic | 45.0% | |
AAAGGGTGGGAGAGAAACAT+GGG | - | chr8.2:57995076-57995095 | None:intergenic | 45.0% | |
AACCGCCGTTGAAAATGAGT+GGG | + | chr8.2:57992914-57992933 | MS.gene83159:CDS | 45.0% | |
AAGCAAGGAAGCCTGAGTAT+GGG | - | chr8.2:57995584-57995603 | None:intergenic | 45.0% | |
AAGCTGGTAGGAAATGGTAC+AGG | - | chr8.2:57994980-57994999 | None:intergenic | 45.0% | |
AATCCAGGTGAAGGAGATGA+TGG | + | chr8.2:57996167-57996186 | MS.gene83159:CDS | 45.0% | |
AATCCAGGTGAGGATAATCC+AGG | + | chr8.2:57996152-57996171 | MS.gene83159:CDS | 45.0% | |
ACAGTCCTCACCTTACATTC+CGG | - | chr8.2:57993492-57993511 | None:intergenic | 45.0% | |
ACCACTGTCAATAACCACAG+TGG | - | chr8.2:57995202-57995221 | None:intergenic | 45.0% | |
ACTTTCCCAAACTCAGGCTT+AGG | + | chr8.2:57995126-57995145 | MS.gene83159:intron | 45.0% | |
AGCTGGTAGGAAATGGTACA+GGG | - | chr8.2:57994979-57994998 | None:intergenic | 45.0% | |
AGGAATATCAGAGGGAAAGC+TGG | - | chr8.2:57994996-57995015 | None:intergenic | 45.0% | |
AGGCCATACCACTTCAAATG+TGG | + | chr8.2:57993544-57993563 | MS.gene83159:intron | 45.0% | |
ATATCAGAGGGAAAGCTGGT+AGG | - | chr8.2:57994992-57995011 | None:intergenic | 45.0% | |
ATGGATGGTCTGTTGTCTCA+AGG | + | chr8.2:57996186-57996205 | MS.gene83159:CDS | 45.0% | |
ATTTGGCCTAAGCCTGAGTT+TGG | - | chr8.2:57995135-57995154 | None:intergenic | 45.0% | |
CAAGCATTCACCGAAGGAAT+TGG | + | chr8.2:57992861-57992880 | MS.gene83159:CDS | 45.0% | |
CGCAAGTCTAAGTTTCAGAG+AGG | + | chr8.2:57994917-57994936 | MS.gene83159:intron | 45.0% | |
CGTAATCCAGCTGCTTATTC+TGG | + | chr8.2:57994308-57994327 | MS.gene83159:CDS | 45.0% | |
GAAAGGATATTCTCCCAACC+CGG | - | chr8.2:57995536-57995555 | None:intergenic | 45.0% | |
GAGGTGTGAAGGAATATCAG+AGG | - | chr8.2:57995005-57995024 | None:intergenic | 45.0% | |
GCTTGGTTCACTCAATCCAA+AGG | + | chr8.2:57992987-57993006 | MS.gene83159:CDS | 45.0% | |
GGCCATACCACTTCAAATGT+GGG | + | chr8.2:57993545-57993564 | MS.gene83159:intron | 45.0% | |
GGCCCAACCAAAATGCTATA+TGG | - | chr8.2:57993679-57993698 | None:intergenic | 45.0% | |
GGCCTAACTCATCCTTACAA+AGG | + | chr8.2:57993695-57993714 | MS.gene83159:intron | 45.0% | |
GTCAGTTAGACGCATAGGAT+GGG | - | chr8.2:57995038-57995057 | None:intergenic | 45.0% | |
TCCACTGTGGTTATTGACAG+TGG | + | chr8.2:57995198-57995217 | MS.gene83159:intron | 45.0% | |
TCCTTCGGTGAATGCTTGAA+GGG | - | chr8.2:57992859-57992878 | None:intergenic | 45.0% | |
TGGATTGAGTGAACCAAGCA+AGG | - | chr8.2:57992986-57993005 | None:intergenic | 45.0% | |
TGGTTTATTGAGGGGAGGAA+GGG | - | chr8.2:57995675-57995694 | None:intergenic | 45.0% | |
TGTTTATAAGTGGCCGAGTG+GGG | - | chr8.2:57993517-57993536 | None:intergenic | 45.0% | |
TTAGGGGACTAAATTGACCG+AGG | + | chr8.2:57993907-57993926 | MS.gene83159:intron | 45.0% | |
TTCCTTCGGTGAATGCTTGA+AGG | - | chr8.2:57992860-57992879 | None:intergenic | 45.0% | |
TTGCCCAACGGATCTTGAAT+AGG | + | chr8.2:57993645-57993664 | MS.gene83159:intron | 45.0% | |
TTTAGGGACTGCTTGATACC+GGG | + | chr8.2:57995317-57995336 | MS.gene83159:intron | 45.0% | |
TTTGGCCTAAGCCTGAGTTT+GGG | - | chr8.2:57995134-57995153 | None:intergenic | 45.0% | |
! | ACTCATTTTCAACGGCGGTT+CGG | - | chr8.2:57992914-57992933 | None:intergenic | 45.0% |
! | AGTCCTAGAAGTGACTTGTG+AGG | - | chr8.2:57993587-57993606 | None:intergenic | 45.0% |
! | CCCATTAACTGCCTTGTTCA+TGG | - | chr8.2:57996120-57996139 | None:intergenic | 45.0% |
! | CTTTAGGGACTGCTTGATAC+CGG | + | chr8.2:57995316-57995335 | MS.gene83159:intron | 45.0% |
! | GTCCCACATTTGAAGTGGTA+TGG | - | chr8.2:57993550-57993569 | None:intergenic | 45.0% |
! | GTCCTAGAAGTGACTTGTGA+GGG | - | chr8.2:57993586-57993605 | None:intergenic | 45.0% |
! | TAAGCTGGTTTATTGAGGGG+AGG | - | chr8.2:57995680-57995699 | None:intergenic | 45.0% |
! | TCCAGCCCACTCATTTTCAA+CGG | - | chr8.2:57992922-57992941 | None:intergenic | 45.0% |
! | TCCTAGAAGTGACTTGTGAG+GGG | - | chr8.2:57993585-57993604 | None:intergenic | 45.0% |
! | TGAAGATGGTAGCGATGAAC+AGG | + | chr8.2:57993185-57993204 | MS.gene83159:CDS | 45.0% |
!! | TGAGAGATGCTAGAGGTGTT+TGG | - | chr8.2:57995101-57995120 | None:intergenic | 45.0% |
!!! | AGGTTTTATTAGGCCGGGTT+GGG | + | chr8.2:57995520-57995539 | MS.gene83159:intron | 45.0% |
AAGGGTGGGAGAGAAACATG+GGG | - | chr8.2:57995075-57995094 | None:intergenic | 50.0% | |
AGCACGTCAGTTAGACGCAT+AGG | - | chr8.2:57995043-57995062 | None:intergenic | 50.0% | |
ATGTAGCCAGCCCAACTTGT+AGG | + | chr8.2:57995779-57995798 | MS.gene83159:intron | 50.0% | |
CAAAGGGTGGGAGAGAAACA+TGG | - | chr8.2:57995077-57995096 | None:intergenic | 50.0% | |
CAAGCAAGGAAGCCTGAGTA+TGG | - | chr8.2:57995585-57995604 | None:intergenic | 50.0% | |
CATCCATCATCTCCTTCACC+TGG | - | chr8.2:57996173-57996192 | None:intergenic | 50.0% | |
CATGTTTCTCTCCCACCCTT+TGG | + | chr8.2:57995075-57995094 | MS.gene83159:intron | 50.0% | |
CCTTCGGTGAATGCTTGAAG+GGG | - | chr8.2:57992858-57992877 | None:intergenic | 50.0% | |
CGTCAGTTAGACGCATAGGA+TGG | - | chr8.2:57995039-57995058 | None:intergenic | 50.0% | |
CTGGTTTATTGAGGGGAGGA+AGG | - | chr8.2:57995676-57995695 | None:intergenic | 50.0% | |
GAACCAAGCAAGGACATCAG+CGG | - | chr8.2:57992976-57992995 | None:intergenic | 50.0% | |
GAACCGCCGTTGAAAATGAG+TGG | + | chr8.2:57992913-57992932 | MS.gene83159:CDS | 50.0% | |
GAATTCGTGCTCCCATACTC+AGG | + | chr8.2:57995570-57995589 | MS.gene83159:intron | 50.0% | |
GAGAGGTGATTGAGGTGTGA+AGG | - | chr8.2:57995016-57995035 | None:intergenic | 50.0% | |
GAGGGAAAGCTGGTAGGAAA+TGG | - | chr8.2:57994986-57995005 | None:intergenic | 50.0% | |
GATGGTCTGTTGTCTCAAGG+AGG | + | chr8.2:57996189-57996208 | MS.gene83159:CDS | 50.0% | |
GGTGAGGATAATCCAGGTGA+AGG | + | chr8.2:57996158-57996177 | MS.gene83159:CDS | 50.0% | |
GGTTTATTGAGGGGAGGAAG+GGG | - | chr8.2:57995674-57995693 | None:intergenic | 50.0% | |
GTTTATAAGTGGCCGAGTGG+GGG | - | chr8.2:57993516-57993535 | None:intergenic | 50.0% | |
GTTTATTGAGGGGAGGAAGG+GGG | - | chr8.2:57995673-57995692 | None:intergenic | 50.0% | |
TAGGATGGGAGAGGTGATTG+AGG | - | chr8.2:57995024-57995043 | None:intergenic | 50.0% | |
TCACCTGGATTATCCTCACC+TGG | - | chr8.2:57996158-57996177 | None:intergenic | 50.0% | |
TCCCCTCACAAGTCACTTCT+AGG | + | chr8.2:57993581-57993600 | MS.gene83159:intron | 50.0% | |
TGCACACCAGAATAAGCAGC+TGG | - | chr8.2:57994317-57994336 | None:intergenic | 50.0% | |
TTAGACGCATAGGATGGGAG+AGG | - | chr8.2:57995033-57995052 | None:intergenic | 50.0% | |
TTTATAAGTGGCCGAGTGGG+GGG | - | chr8.2:57993515-57993534 | None:intergenic | 50.0% | |
! | AGCCCACTCATTTTCAACGG+CGG | - | chr8.2:57992919-57992938 | None:intergenic | 50.0% |
! | TCCTTTAAGCAAGGGTGCAC+CGG | - | chr8.2:57995494-57995513 | None:intergenic | 50.0% |
! | TGACGGAACTTGTTCCACTG+TGG | + | chr8.2:57995185-57995204 | MS.gene83159:intron | 50.0% |
!! | CAGGTGAAGGAGATGATGGA+TGG | + | chr8.2:57996171-57996190 | MS.gene83159:CDS | 50.0% |
!! | GCTAGAGGTGTTTGGCCAAA+GGG | - | chr8.2:57995093-57995112 | None:intergenic | 50.0% |
!! | GGTGGTCCTTGTAGCTTGTT+AGG | - | chr8.2:57992837-57992856 | None:intergenic | 50.0% |
!! | TGCTAGAGGTGTTTGGCCAA+AGG | - | chr8.2:57995094-57995113 | None:intergenic | 50.0% |
!!! | CAGGTTTTATTAGGCCGGGT+TGG | + | chr8.2:57995519-57995538 | MS.gene83159:intron | 50.0% |
ACGCGCACTTTCCCAAACTC+AGG | + | chr8.2:57995120-57995139 | MS.gene83159:intron | 55.0% | |
AGGAAGGTGGCTAGCAAGCA+AGG | - | chr8.2:57995599-57995618 | None:intergenic | 55.0% | |
AGGGTGGGAGAGAAACATGG+GGG | - | chr8.2:57995074-57995093 | None:intergenic | 55.0% | |
CCCCTTCAAGCATTCACCGA+AGG | + | chr8.2:57992855-57992874 | MS.gene83159:CDS | 55.0% | |
CCTGACAGCAAGTTGCCCAA+CGG | + | chr8.2:57993633-57993652 | MS.gene83159:intron | 55.0% | |
CTGGGGAGAATGTAGGAAGG+TGG | - | chr8.2:57995612-57995631 | None:intergenic | 55.0% | |
GCCGTTGAAAATGAGTGGGC+TGG | + | chr8.2:57992918-57992937 | MS.gene83159:CDS | 55.0% | |
TCAGCCGGAAAATCCAGGTG+AGG | + | chr8.2:57996142-57996161 | MS.gene83159:CDS | 55.0% | |
TCCGGTGCACCCTTGCTTAA+AGG | + | chr8.2:57995490-57995509 | MS.gene83159:intron | 55.0% | |
TCGGTGAATGCTTGAAGGGG+TGG | - | chr8.2:57992855-57992874 | None:intergenic | 55.0% | |
! | GAGGTGTTTGGCCAAAGGGT+GGG | - | chr8.2:57995089-57995108 | None:intergenic | 55.0% |
! | GGCAGTTAATGGGTCTCAGC+CGG | + | chr8.2:57996127-57996146 | MS.gene83159:CDS | 55.0% |
!! | AGAGGTGTTTGGCCAAAGGG+TGG | - | chr8.2:57995090-57995109 | None:intergenic | 55.0% |
CAAGGACATCAGCGGCGAGT+TGG | - | chr8.2:57992968-57992987 | None:intergenic | 60.0% | |
GGGTCTCAGCCGGAAAATCC+AGG | + | chr8.2:57996137-57996156 | MS.gene83159:CDS | 60.0% | |
GGGTGGGAGAGAAACATGGG+GGG | - | chr8.2:57995073-57995092 | None:intergenic | 60.0% | |
GTGCGCGTGAGAGATGCTAG+AGG | - | chr8.2:57995108-57995127 | None:intergenic | 60.0% | |
TCGCCGCTGATGTCCTTGCT+TGG | + | chr8.2:57992970-57992989 | MS.gene83159:CDS | 60.0% | |
TGAGGGGAGGAAGGGGGTAA+TGG | - | chr8.2:57995667-57995686 | None:intergenic | 60.0% | |
!! | CCGTTGGGCAACTTGCTGTC+AGG | - | chr8.2:57993636-57993655 | None:intergenic | 60.0% |
!! | CGGCGAGTTGGTGAGCTTTG+AGG | - | chr8.2:57992956-57992975 | None:intergenic | 60.0% |
GTGAGGACTGTCCCCCCACT+CGG | + | chr8.2:57993501-57993520 | MS.gene83159:intron | 65.0% | |
! | GGAGGAAGGGGGTAATGGCC+AGG | - | chr8.2:57995662-57995681 | None:intergenic | 65.0% |
!! | CGGTTCGGAGCGCCGACCAA+CGG | - | chr8.2:57992899-57992918 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 57992825 | 57996235 | 57992825 | ID=MS.gene83159 |
chr8.2 | mRNA | 57992825 | 57996235 | 57992825 | ID=MS.gene83159.t1;Parent=MS.gene83159 |
chr8.2 | exon | 57992825 | 57993008 | 57992825 | ID=MS.gene83159.t1.exon1;Parent=MS.gene83159.t1 |
chr8.2 | CDS | 57992825 | 57993008 | 57992825 | ID=cds.MS.gene83159.t1;Parent=MS.gene83159.t1 |
chr8.2 | exon | 57993118 | 57993206 | 57993118 | ID=MS.gene83159.t1.exon2;Parent=MS.gene83159.t1 |
chr8.2 | CDS | 57993118 | 57993206 | 57993118 | ID=cds.MS.gene83159.t1;Parent=MS.gene83159.t1 |
chr8.2 | exon | 57994227 | 57994340 | 57994227 | ID=MS.gene83159.t1.exon3;Parent=MS.gene83159.t1 |
chr8.2 | CDS | 57994227 | 57994340 | 57994227 | ID=cds.MS.gene83159.t1;Parent=MS.gene83159.t1 |
chr8.2 | exon | 57996008 | 57996235 | 57996008 | ID=MS.gene83159.t1.exon4;Parent=MS.gene83159.t1 |
chr8.2 | CDS | 57996008 | 57996235 | 57996008 | ID=cds.MS.gene83159.t1;Parent=MS.gene83159.t1 |
Gene Sequence |
Protein sequence |