AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene83159


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83159.t1 MTR_8g043450 92.195 205 14 1 1 203 1 205 1.33e-136 380
MS.gene83159.t1 MTR_8g043430 42.775 173 92 4 1 170 1 169 8.48e-37 126
MS.gene83159.t1 MTR_1g035200 52.273 132 60 2 1 132 91 219 4.76e-35 124
MS.gene83159.t1 MTR_8g043410 42.748 131 74 1 1 130 1 131 2.33e-31 111
MS.gene83159.t1 MTR_5g006380 48.148 81 41 1 17 96 18 98 1.50e-18 78.2
MS.gene83159.t1 MTR_7g086210 34.579 107 67 2 12 116 252 357 4.74e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83159.t1 AT5G27990 39.791 191 93 6 15 204 15 184 6.56e-28 104
MS.gene83159.t1 AT5G27990 39.791 191 93 6 15 204 15 184 6.56e-28 104
MS.gene83159.t1 AT3G22510 39.806 103 57 3 10 108 23 124 1.37e-16 73.2

Find 53 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAGTTAGATTCGGATTT+TGG 0.118567 8.2:-57996092 None:intergenic
CCCATTAACTGCCTTGTTCA+TGG 0.257049 8.2:-57996117 None:intergenic
GGTGGTCCTTGTAGCTTGTT+AGG 0.297509 8.2:-57992834 None:intergenic
CGTAATCCAGCTGCTTATTC+TGG 0.316707 8.2:+57994308 MS.gene83159:CDS
TCCATGAACAAGGCAGTTAA+TGG 0.322486 8.2:+57996116 MS.gene83159:CDS
CAAGCATTCACCGAAGGAAT+TGG 0.332888 8.2:+57992861 MS.gene83159:CDS
ATGTACGGAGAATGTTTAGA+AGG 0.404882 8.2:+57994248 MS.gene83159:CDS
CGGCGAGTTGGTGAGCTTTG+AGG 0.405818 8.2:-57992953 None:intergenic
CATGGAATTCAAGTTAGATT+CGG 0.413868 8.2:-57996099 None:intergenic
ATTCTCCGTACATAATCATT+AGG 0.419425 8.2:-57994238 None:intergenic
TGAAGATGGTAGCGATGAAC+AGG 0.428791 8.2:+57993185 MS.gene83159:CDS
TGCTTATTCTGGTGTGCAAA+AGG 0.442639 8.2:+57994319 MS.gene83159:CDS
TTCCTTCGGTGAATGCTTGA+AGG 0.447098 8.2:-57992857 None:intergenic
ATTCACCGAAGGAATTGGTT+TGG 0.452171 8.2:+57992866 MS.gene83159:CDS
TCGCCGCTGATGTCCTTGCT+TGG 0.458421 8.2:+57992970 MS.gene83159:CDS
AATCCAGGTGAAGGAGATGA+TGG 0.464837 8.2:+57996167 MS.gene83159:CDS
CCATGAACAAGGCAGTTAAT+GGG 0.478078 8.2:+57996117 MS.gene83159:CDS
CTTGAAAACTTACTCTATCA+AGG 0.485832 8.2:+57993138 MS.gene83159:CDS
CAAAACCAAACCAATTCCTT+CGG 0.487339 8.2:-57992871 None:intergenic
GGGTCTCAGCCGGAAAATCC+AGG 0.517000 8.2:+57996137 MS.gene83159:CDS
ATGCTGTGCTAGATTGTGAA+TGG 0.520448 8.2:+57995996 MS.gene83159:intron
TGCACACCAGAATAAGCAGC+TGG 0.521274 8.2:-57994314 None:intergenic
TCACCTGGATTATCCTCACC+TGG 0.521450 8.2:-57996155 None:intergenic
CATCCATCATCTCCTTCACC+TGG 0.522549 8.2:-57996170 None:intergenic
TCCTTCGGTGAATGCTTGAA+GGG 0.524962 8.2:-57992856 None:intergenic
GCCGTTGAAAATGAGTGGGC+TGG 0.531900 8.2:+57992918 MS.gene83159:CDS
GGCAGTTAATGGGTCTCAGC+CGG 0.532626 8.2:+57996127 MS.gene83159:CDS
CAAGGACATCAGCGGCGAGT+TGG 0.532997 8.2:-57992965 None:intergenic
CGGTTCGGAGCGCCGACCAA+CGG 0.534881 8.2:-57992896 None:intergenic
GTCAATATAGTGATTGAAGA+TGG 0.545813 8.2:+57993171 MS.gene83159:CDS
TGGATTGAGTGAACCAAGCA+AGG 0.551697 8.2:-57992983 None:intergenic
TGCTAGATTGTGAATGGCAA+TGG 0.553024 8.2:+57996002 MS.gene83159:intron
AATCCAGGTGAGGATAATCC+AGG 0.559977 8.2:+57996152 MS.gene83159:CDS
GGACGATAATTCAGCAAACA+TGG 0.569749 8.2:+57996058 MS.gene83159:CDS
GAAGACCTAATGATTATGTA+CGG 0.576974 8.2:+57994233 MS.gene83159:CDS
TCGGTGAATGCTTGAAGGGG+TGG 0.580683 8.2:-57992852 None:intergenic
TAATTCAGCAAACATGGATG+TGG 0.582482 8.2:+57996064 MS.gene83159:CDS
AAAACTTACTCTATCAAGGA+GGG 0.590140 8.2:+57993142 MS.gene83159:CDS
GCTTGGTTCACTCAATCCAA+AGG 0.593121 8.2:+57992987 MS.gene83159:CDS
ATGGATGGTCTGTTGTCTCA+AGG 0.606611 8.2:+57996186 MS.gene83159:CDS
GAACCGCCGTTGAAAATGAG+TGG 0.611433 8.2:+57992913 MS.gene83159:CDS
GGTGAGGATAATCCAGGTGA+AGG 0.612481 8.2:+57996158 MS.gene83159:CDS
AACCGCCGTTGAAAATGAGT+GGG 0.615075 8.2:+57992914 MS.gene83159:CDS
CAGGTGAAGGAGATGATGGA+TGG 0.615703 8.2:+57996171 MS.gene83159:CDS
ACGAATCCTAACAAGCTACA+AGG 0.631057 8.2:+57992828 MS.gene83159:CDS
CCTTCGGTGAATGCTTGAAG+GGG 0.635643 8.2:-57992855 None:intergenic
TAACTTGAATTCCATGAACA+AGG 0.636334 8.2:+57996106 MS.gene83159:CDS
CCCCTTCAAGCATTCACCGA+AGG 0.638533 8.2:+57992855 MS.gene83159:CDS
GAAAACTTACTCTATCAAGG+AGG 0.642840 8.2:+57993141 MS.gene83159:CDS
GAACCAAGCAAGGACATCAG+CGG 0.665981 8.2:-57992973 None:intergenic
TCAGCCGGAAAATCCAGGTG+AGG 0.693925 8.2:+57996142 MS.gene83159:CDS
GATGGTCTGTTGTCTCAAGG+AGG 0.721375 8.2:+57996189 MS.gene83159:CDS
TGATTCTGATGATAACACTG+AGG 0.835231 8.2:+57996037 MS.gene83159:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAAACTATTAGAATTT+GGG + chr8.2:57993441-57993460 MS.gene83159:intron 10.0%
!!! TATGATATTATTATTTTGTT+TGG + chr8.2:57995380-57995399 MS.gene83159:intron 10.0%
!!! TTAAATTATGTATTTGTTTT+TGG + chr8.2:57993228-57993247 MS.gene83159:intron 10.0%
!! GATATAAAACTATTAGAATT+TGG + chr8.2:57993440-57993459 MS.gene83159:intron 15.0%
!!! ATATGTTAATTTAGCATTTT+TGG + chr8.2:57995892-57995911 MS.gene83159:intron 15.0%
!! AAAAAGAAATGATCAACTTT+AGG + chr8.2:57995300-57995319 MS.gene83159:intron 20.0%
!! AAAAGAAATGATCAACTTTA+GGG + chr8.2:57995301-57995320 MS.gene83159:intron 20.0%
!! AATTTGGAAATTAGTCAAAT+GGG + chr8.2:57993782-57993801 MS.gene83159:intron 20.0%
!! ATTTGCAATATCAAATTTGT+AGG + chr8.2:57994393-57994412 MS.gene83159:intron 20.0%
!! CAATTACACAATGTTATATT+AGG - chr8.2:57995743-57995762 None:intergenic 20.0%
!! CAGGAATTAAAAAGAAATAA+TGG - chr8.2:57995643-57995662 None:intergenic 20.0%
!! GATTTAAACTGTGAATAATT+TGG + chr8.2:57993292-57993311 MS.gene83159:intron 20.0%
!! GCTTAAACAATTAAAAAAAC+AGG - chr8.2:57993035-57993054 None:intergenic 20.0%
!! TTTGCAATATCAAATTTGTA+GGG + chr8.2:57994394-57994413 MS.gene83159:intron 20.0%
!!! AATTTAGCATTTTTGGTTTA+TGG + chr8.2:57995899-57995918 MS.gene83159:intron 20.0%
!!! CATTATTTCTTTTTAATTCC+TGG + chr8.2:57995641-57995660 MS.gene83159:intron 20.0%
!!! CTCTTTTGTTAGTAATTTTA+GGG + chr8.2:57993890-57993909 MS.gene83159:intron 20.0%
!!! GTTTAAAATTATGTTGACAA+AGG - chr8.2:57994947-57994966 None:intergenic 20.0%
!!! TATTATTTTGTTTGGCTTTT+TGG + chr8.2:57995388-57995407 MS.gene83159:intron 20.0%
!!! TCTTTTGTTAGTAATTTTAG+GGG + chr8.2:57993891-57993910 MS.gene83159:intron 20.0%
!!! TTGATCATTTCTTTTTAACA+CGG - chr8.2:57995296-57995315 None:intergenic 20.0%
!!! TTGCAATTTTAACATGTTTA+GGG - chr8.2:57993855-57993874 None:intergenic 20.0%
!!! TTTGCAATTTTAACATGTTT+AGG - chr8.2:57993856-57993875 None:intergenic 20.0%
!!! TTTTTGGAATATTACTTTAC+TGG + chr8.2:57993244-57993263 MS.gene83159:intron 20.0%
! AAAACTATTAGAATTTGGGT+TGG + chr8.2:57993445-57993464 MS.gene83159:intron 25.0%
! AAACAATTTCTCATCATTAG+AGG - chr8.2:57994891-57994910 None:intergenic 25.0%
! AAATAATGGCTTAAAAACTG+GGG - chr8.2:57995629-57995648 None:intergenic 25.0%
! ACATCAAACCATTAATTAGA+TGG + chr8.2:57995699-57995718 MS.gene83159:intron 25.0%
! AGAAATAATGGCTTAAAAAC+TGG - chr8.2:57995631-57995650 None:intergenic 25.0%
! ATTTCTCTGCATTAGAAATT+AGG + chr8.2:57994761-57994780 MS.gene83159:intron 25.0%
! CAATTTGGAAATTAGTCAAA+TGG + chr8.2:57993781-57993800 MS.gene83159:intron 25.0%
! CCTAAAATTACTAACAAAAG+AGG - chr8.2:57993892-57993911 None:intergenic 25.0%
! CTAATTCAACCTTATAAAAC+CGG + chr8.2:57993470-57993489 MS.gene83159:intron 25.0%
! GAAATAATGGCTTAAAAACT+GGG - chr8.2:57995630-57995649 None:intergenic 25.0%
! GAACATTTCCATCTAATTAA+TGG - chr8.2:57995710-57995729 None:intergenic 25.0%
! GTGATTAATTACAATACCTT+TGG - chr8.2:57993006-57993025 None:intergenic 25.0%
! TCTAATGATGAGAAATTGTT+TGG + chr8.2:57994890-57994909 MS.gene83159:intron 25.0%
! TTGTGTAATTGTAACTTTGA+TGG + chr8.2:57995752-57995771 MS.gene83159:intron 25.0%
!! AAACTATTAGAATTTGGGTT+GGG + chr8.2:57993446-57993465 MS.gene83159:intron 25.0%
!! ATTTTATAAGAGCAACACTT+TGG - chr8.2:57993349-57993368 None:intergenic 25.0%
!! CCAAATTGTTATTAGAAGAA+GGG - chr8.2:57993769-57993788 None:intergenic 25.0%
!! CCTCTTTTGTTAGTAATTTT+AGG + chr8.2:57993889-57993908 MS.gene83159:intron 25.0%
!! GGATATTTAGGTTTATATAG+AGG + chr8.2:57995409-57995428 MS.gene83159:intron 25.0%
!! GTGTTGCTCTTATAAAATTA+CGG + chr8.2:57993351-57993370 MS.gene83159:intron 25.0%
!! TATGATACCATATAGCATTT+TGG + chr8.2:57993669-57993688 MS.gene83159:intron 25.0%
!! TCCAAATTGTTATTAGAAGA+AGG - chr8.2:57993770-57993789 None:intergenic 25.0%
!!! AGGATATTTCAGGTTTTATT+AGG + chr8.2:57995510-57995529 MS.gene83159:intron 25.0%
!!! TAAACAAAAGCATTGATGTT+TGG + chr8.2:57993724-57993743 MS.gene83159:intron 25.0%
AAAACTTACTCTATCAAGGA+GGG + chr8.2:57993142-57993161 MS.gene83159:CDS 30.0%
AAATTAAGGCACAATGCATT+TGG + chr8.2:57994343-57994362 MS.gene83159:intron 30.0%
AACACATTCAAGGACTAAAT+TGG + chr8.2:57993933-57993952 MS.gene83159:intron 30.0%
ACACACACACACAAATTTAT+TGG + chr8.2:57994698-57994717 MS.gene83159:intron 30.0%
ATTAATGGTTTGATGTAAGC+TGG - chr8.2:57995695-57995714 None:intergenic 30.0%
ATTCTCCGTACATAATCATT+AGG - chr8.2:57994241-57994260 None:intergenic 30.0%
CACAAATTCTATTTGACCAA+GGG - chr8.2:57994099-57994118 None:intergenic 30.0%
CCACTTATAAACAATTGTTC+AGG + chr8.2:57993524-57993543 MS.gene83159:intron 30.0%
CCCTTCTTCTAATAACAATT+TGG + chr8.2:57993766-57993785 MS.gene83159:intron 30.0%
CCTGAACAATTGTTTATAAG+TGG - chr8.2:57993527-57993546 None:intergenic 30.0%
CTGAAATATCCTTTAAGCAA+GGG - chr8.2:57995502-57995521 None:intergenic 30.0%
CTTGAAAACTTACTCTATCA+AGG + chr8.2:57993138-57993157 MS.gene83159:CDS 30.0%
GAAGACCTAATGATTATGTA+CGG + chr8.2:57994233-57994252 MS.gene83159:CDS 30.0%
GGATTTCAATTTCTACATGA+TGG + chr8.2:57994436-57994455 MS.gene83159:intron 30.0%
GTACATGTTTGTGATAATAC+AGG + chr8.2:57994205-57994224 MS.gene83159:intron 30.0%
GTCAATATAGTGATTGAAGA+TGG + chr8.2:57993171-57993190 MS.gene83159:CDS 30.0%
TAACTTGAATTCCATGAACA+AGG + chr8.2:57996106-57996125 MS.gene83159:CDS 30.0%
TATCACTATAACTGCAATTG+AGG - chr8.2:57993424-57993443 None:intergenic 30.0%
TCTTGACAGCAAAAATTTAG+AGG + chr8.2:57995432-57995451 MS.gene83159:intron 30.0%
! AGTATTTGAGTTTGAGTTTC+CGG + chr8.2:57995472-57995491 MS.gene83159:intron 30.0%
! CAAGTATTTTCCTACAAGTT+GGG - chr8.2:57995792-57995811 None:intergenic 30.0%
! CATGGAATTCAAGTTAGATT+CGG - chr8.2:57996102-57996121 None:intergenic 30.0%
! CTTGATAGAGTAAGTTTTCA+AGG - chr8.2:57993140-57993159 None:intergenic 30.0%
! GGTATGTGTTTGATTGATTT+AGG + chr8.2:57994415-57994434 MS.gene83159:intron 30.0%
! TCTACATGATGGCATATTTT+AGG + chr8.2:57994447-57994466 MS.gene83159:intron 30.0%
!! ATACCATATAGCATTTTGGT+TGG + chr8.2:57993673-57993692 MS.gene83159:intron 30.0%
!! CGGTTTTATAAGGTTGAATT+AGG - chr8.2:57993472-57993491 None:intergenic 30.0%
!! TTCAAGTTAGATTCGGATTT+TGG - chr8.2:57996095-57996114 None:intergenic 30.0%
!!! GTTTGGCTTTTTGGATATTT+AGG + chr8.2:57995397-57995416 MS.gene83159:intron 30.0%
!!! TACCATATAGCATTTTGGTT+GGG + chr8.2:57993674-57993693 MS.gene83159:intron 30.0%
!!! TATTTCAGGTTTTATTAGGC+CGG + chr8.2:57995514-57995533 MS.gene83159:intron 30.0%
ACTCATGACATGTGTAATCA+AGG - chr8.2:57995937-57995956 None:intergenic 35.0%
AGGGTCAATGATCTCAATTT+AGG - chr8.2:57993750-57993769 None:intergenic 35.0%
ATGTACGGAGAATGTTTAGA+AGG + chr8.2:57994248-57994267 MS.gene83159:CDS 35.0%
CAAAACCAAACCAATTCCTT+CGG - chr8.2:57992874-57992893 None:intergenic 35.0%
CAACAGCTAATGGAGATATT+TGG - chr8.2:57995152-57995171 None:intergenic 35.0%
CCAACTTGTAGGAAAATACT+TGG + chr8.2:57995790-57995809 MS.gene83159:intron 35.0%
CCTGAAATATCCTTTAAGCA+AGG - chr8.2:57995503-57995522 None:intergenic 35.0%
CCTTATAAAACCGGAATGTA+AGG + chr8.2:57993479-57993498 MS.gene83159:intron 35.0%
CCTTGCTTAAAGGATATTTC+AGG + chr8.2:57995500-57995519 MS.gene83159:intron 35.0%
GAAAACTTACTCTATCAAGG+AGG + chr8.2:57993141-57993160 MS.gene83159:CDS 35.0%
GACAGCAAGTTACACTTATA+GGG + chr8.2:57994056-57994075 MS.gene83159:intron 35.0%
GCACAAATTCTATTTGACCA+AGG - chr8.2:57994100-57994119 None:intergenic 35.0%
GCATAAACTCACAAAAAGCA+CGG - chr8.2:57994796-57994815 None:intergenic 35.0%
GCTAATGTATCAACAGCTAA+TGG - chr8.2:57995162-57995181 None:intergenic 35.0%
GGTGTGCAAAAGGTAAATTA+AGG + chr8.2:57994329-57994348 MS.gene83159:intron 35.0%
GTCAGGAAATCAACTACAAT+AGG - chr8.2:57995837-57995856 None:intergenic 35.0%
GTCTCAAGGAGGAAAAATAA+GGG + chr8.2:57996200-57996219 MS.gene83159:CDS 35.0%
GTTGATACATTAGCTGTTGA+CGG + chr8.2:57995168-57995187 MS.gene83159:intron 35.0%
GTTTAGGGACTATATTGACA+GGG - chr8.2:57993840-57993859 None:intergenic 35.0%
TAATTCAGCAAACATGGATG+TGG + chr8.2:57996064-57996083 MS.gene83159:CDS 35.0%
TGACAGCAAGTTACACTTAT+AGG + chr8.2:57994055-57994074 MS.gene83159:intron 35.0%
TGATTCTGATGATAACACTG+AGG + chr8.2:57996037-57996056 MS.gene83159:CDS 35.0%
TGCAATTGAGGAAACATTTG+TGG - chr8.2:57993412-57993431 None:intergenic 35.0%
TGTCTCAAGGAGGAAAAATA+AGG + chr8.2:57996199-57996218 MS.gene83159:CDS 35.0%
TGTTTAGGGACTATATTGAC+AGG - chr8.2:57993841-57993860 None:intergenic 35.0%
TGTTTATGAGTCCCTTTGTA+AGG - chr8.2:57993710-57993729 None:intergenic 35.0%
TTAAAAACTGGGGAGAATGT+AGG - chr8.2:57995619-57995638 None:intergenic 35.0%
TTCTGAGTACTTCTCTTGAA+AGG - chr8.2:57995553-57995572 None:intergenic 35.0%
! ATGTAAGCTGGTTTATTGAG+GGG - chr8.2:57995683-57995702 None:intergenic 35.0%
! CCAAGTATTTTCCTACAAGT+TGG - chr8.2:57995793-57995812 None:intergenic 35.0%
! GATGTAAGCTGGTTTATTGA+GGG - chr8.2:57995684-57995703 None:intergenic 35.0%
! TATAAAGCGTTTCTGTGAAG+AGG - chr8.2:57993110-57993129 None:intergenic 35.0%
! TATTTGGAGCATGATCTGAA+TGG + chr8.2:57993610-57993629 MS.gene83159:intron 35.0%
! TCCTTGAATGTGTTTTTCCT+CGG - chr8.2:57993927-57993946 None:intergenic 35.0%
! TGACAGTGGTATTGAAGAAT+CGG + chr8.2:57995212-57995231 MS.gene83159:intron 35.0%
! TGATGTAAGCTGGTTTATTG+AGG - chr8.2:57995685-57995704 None:intergenic 35.0%
! TTTGCCATTTCGATTCATTC+AGG + chr8.2:57994025-57994044 MS.gene83159:intron 35.0%
!! ACATGATGGCATATTTTAGG+AGG + chr8.2:57994450-57994469 MS.gene83159:intron 35.0%
!! AGTGTAACTTGCTGTCATAT+TGG - chr8.2:57994052-57994071 None:intergenic 35.0%
!! CACTTCTAGGACTAGATATT+TGG + chr8.2:57993594-57993613 MS.gene83159:intron 35.0%
!! CCTTACATTCCGGTTTTATA+AGG - chr8.2:57993482-57993501 None:intergenic 35.0%
!! GACACAAACTCTAGTCTTAT+TGG + chr8.2:57994577-57994596 MS.gene83159:intron 35.0%
!! TACTAACAAAAGAGGCACTA+GGG - chr8.2:57993884-57993903 None:intergenic 35.0%
!! TGTTTTTGTCAGTGAAAGCA+AGG - chr8.2:57994821-57994840 None:intergenic 35.0%
!! TTACTAACAAAAGAGGCACT+AGG - chr8.2:57993885-57993904 None:intergenic 35.0%
!!! ATTTCAGGTTTTATTAGGCC+GGG + chr8.2:57995515-57995534 MS.gene83159:intron 35.0%
AAGGCACAATGCATTTGGAA+TGG + chr8.2:57994348-57994367 MS.gene83159:intron 40.0%
ACCGAGGAAAAACACATTCA+AGG + chr8.2:57993923-57993942 MS.gene83159:intron 40.0%
ACGAATCCTAACAAGCTACA+AGG + chr8.2:57992828-57992847 MS.gene83159:CDS 40.0%
AGGTGTGAAGGAATATCAGA+GGG - chr8.2:57995004-57995023 None:intergenic 40.0%
ATAGCCTATTCAAGATCCGT+TGG - chr8.2:57993652-57993671 None:intergenic 40.0%
ATGCTGTGCTAGATTGTGAA+TGG + chr8.2:57995996-57996015 MS.gene83159:intron 40.0%
ATTCACCGAAGGAATTGGTT+TGG + chr8.2:57992866-57992885 MS.gene83159:CDS 40.0%
ATTGTTTATAAGTGGCCGAG+TGG - chr8.2:57993519-57993538 None:intergenic 40.0%
CCATGAACAAGGCAGTTAAT+GGG + chr8.2:57996117-57996136 MS.gene83159:CDS 40.0%
GCCTAACTCATCCTTACAAA+GGG + chr8.2:57993696-57993715 MS.gene83159:intron 40.0%
GGACGATAATTCAGCAAACA+TGG + chr8.2:57996058-57996077 MS.gene83159:CDS 40.0%
TAAAACCGGAATGTAAGGTG+AGG + chr8.2:57993484-57993503 MS.gene83159:intron 40.0%
TAAGAGTCCCACATTTGAAG+TGG - chr8.2:57993555-57993574 None:intergenic 40.0%
TAATCAACAGCGTTCAATCC+CGG - chr8.2:57995338-57995357 None:intergenic 40.0%
TAGCCTATTCAAGATCCGTT+GGG - chr8.2:57993651-57993670 None:intergenic 40.0%
TATCTAGCGTACTCCAACAA+AGG - chr8.2:57994606-57994625 None:intergenic 40.0%
TCCATGAACAAGGCAGTTAA+TGG + chr8.2:57996116-57996135 MS.gene83159:CDS 40.0%
TCCCTTTGTAAGGATGAGTT+AGG - chr8.2:57993700-57993719 None:intergenic 40.0%
TGCTAGATTGTGAATGGCAA+TGG + chr8.2:57996002-57996021 MS.gene83159:intron 40.0%
TGCTTATTCTGGTGTGCAAA+AGG + chr8.2:57994319-57994338 MS.gene83159:CDS 40.0%
TGGTCCTGAATGAATCGAAA+TGG - chr8.2:57994032-57994051 None:intergenic 40.0%
TTGTTTATAAGTGGCCGAGT+GGG - chr8.2:57993518-57993537 None:intergenic 40.0%
! CCAAAACAGTGATTTTCCCT+TGG + chr8.2:57994080-57994099 MS.gene83159:intron 40.0%
! CCAAGGGAAAATCACTGTTT+TGG - chr8.2:57994083-57994102 None:intergenic 40.0%
! CTGTCATTTAGTCTCATGTC+AGG - chr8.2:57995854-57995873 None:intergenic 40.0%
! GTCTTATTGGCATCCTTTGT+TGG + chr8.2:57994590-57994609 MS.gene83159:intron 40.0%
! TTATCCTCACCTGGATTTTC+CGG - chr8.2:57996149-57996168 None:intergenic 40.0%
!! TAGAGGCTTTTGATGACTCA+CGG + chr8.2:57995449-57995468 MS.gene83159:intron 40.0%
!! TATTTTCCTACAAGTTGGGC+TGG - chr8.2:57995788-57995807 None:intergenic 40.0%
!!! TTGGTTTGGTTTTGAACCGT+TGG + chr8.2:57992880-57992899 MS.gene83159:CDS 40.0%
!!! TTTGGTTTTGAACCGTTGGT+CGG + chr8.2:57992884-57992903 MS.gene83159:CDS 40.0%
AAACTGGGGAGAATGTAGGA+AGG - chr8.2:57995615-57995634 None:intergenic 45.0%
AAAGGGTGGGAGAGAAACAT+GGG - chr8.2:57995076-57995095 None:intergenic 45.0%
AACCGCCGTTGAAAATGAGT+GGG + chr8.2:57992914-57992933 MS.gene83159:CDS 45.0%
AAGCAAGGAAGCCTGAGTAT+GGG - chr8.2:57995584-57995603 None:intergenic 45.0%
AAGCTGGTAGGAAATGGTAC+AGG - chr8.2:57994980-57994999 None:intergenic 45.0%
AATCCAGGTGAAGGAGATGA+TGG + chr8.2:57996167-57996186 MS.gene83159:CDS 45.0%
AATCCAGGTGAGGATAATCC+AGG + chr8.2:57996152-57996171 MS.gene83159:CDS 45.0%
ACAGTCCTCACCTTACATTC+CGG - chr8.2:57993492-57993511 None:intergenic 45.0%
ACCACTGTCAATAACCACAG+TGG - chr8.2:57995202-57995221 None:intergenic 45.0%
ACTTTCCCAAACTCAGGCTT+AGG + chr8.2:57995126-57995145 MS.gene83159:intron 45.0%
AGCTGGTAGGAAATGGTACA+GGG - chr8.2:57994979-57994998 None:intergenic 45.0%
AGGAATATCAGAGGGAAAGC+TGG - chr8.2:57994996-57995015 None:intergenic 45.0%
AGGCCATACCACTTCAAATG+TGG + chr8.2:57993544-57993563 MS.gene83159:intron 45.0%
ATATCAGAGGGAAAGCTGGT+AGG - chr8.2:57994992-57995011 None:intergenic 45.0%
ATGGATGGTCTGTTGTCTCA+AGG + chr8.2:57996186-57996205 MS.gene83159:CDS 45.0%
ATTTGGCCTAAGCCTGAGTT+TGG - chr8.2:57995135-57995154 None:intergenic 45.0%
CAAGCATTCACCGAAGGAAT+TGG + chr8.2:57992861-57992880 MS.gene83159:CDS 45.0%
CGCAAGTCTAAGTTTCAGAG+AGG + chr8.2:57994917-57994936 MS.gene83159:intron 45.0%
CGTAATCCAGCTGCTTATTC+TGG + chr8.2:57994308-57994327 MS.gene83159:CDS 45.0%
GAAAGGATATTCTCCCAACC+CGG - chr8.2:57995536-57995555 None:intergenic 45.0%
GAGGTGTGAAGGAATATCAG+AGG - chr8.2:57995005-57995024 None:intergenic 45.0%
GCTTGGTTCACTCAATCCAA+AGG + chr8.2:57992987-57993006 MS.gene83159:CDS 45.0%
GGCCATACCACTTCAAATGT+GGG + chr8.2:57993545-57993564 MS.gene83159:intron 45.0%
GGCCCAACCAAAATGCTATA+TGG - chr8.2:57993679-57993698 None:intergenic 45.0%
GGCCTAACTCATCCTTACAA+AGG + chr8.2:57993695-57993714 MS.gene83159:intron 45.0%
GTCAGTTAGACGCATAGGAT+GGG - chr8.2:57995038-57995057 None:intergenic 45.0%
TCCACTGTGGTTATTGACAG+TGG + chr8.2:57995198-57995217 MS.gene83159:intron 45.0%
TCCTTCGGTGAATGCTTGAA+GGG - chr8.2:57992859-57992878 None:intergenic 45.0%
TGGATTGAGTGAACCAAGCA+AGG - chr8.2:57992986-57993005 None:intergenic 45.0%
TGGTTTATTGAGGGGAGGAA+GGG - chr8.2:57995675-57995694 None:intergenic 45.0%
TGTTTATAAGTGGCCGAGTG+GGG - chr8.2:57993517-57993536 None:intergenic 45.0%
TTAGGGGACTAAATTGACCG+AGG + chr8.2:57993907-57993926 MS.gene83159:intron 45.0%
TTCCTTCGGTGAATGCTTGA+AGG - chr8.2:57992860-57992879 None:intergenic 45.0%
TTGCCCAACGGATCTTGAAT+AGG + chr8.2:57993645-57993664 MS.gene83159:intron 45.0%
TTTAGGGACTGCTTGATACC+GGG + chr8.2:57995317-57995336 MS.gene83159:intron 45.0%
TTTGGCCTAAGCCTGAGTTT+GGG - chr8.2:57995134-57995153 None:intergenic 45.0%
! ACTCATTTTCAACGGCGGTT+CGG - chr8.2:57992914-57992933 None:intergenic 45.0%
! AGTCCTAGAAGTGACTTGTG+AGG - chr8.2:57993587-57993606 None:intergenic 45.0%
! CCCATTAACTGCCTTGTTCA+TGG - chr8.2:57996120-57996139 None:intergenic 45.0%
! CTTTAGGGACTGCTTGATAC+CGG + chr8.2:57995316-57995335 MS.gene83159:intron 45.0%
! GTCCCACATTTGAAGTGGTA+TGG - chr8.2:57993550-57993569 None:intergenic 45.0%
! GTCCTAGAAGTGACTTGTGA+GGG - chr8.2:57993586-57993605 None:intergenic 45.0%
! TAAGCTGGTTTATTGAGGGG+AGG - chr8.2:57995680-57995699 None:intergenic 45.0%
! TCCAGCCCACTCATTTTCAA+CGG - chr8.2:57992922-57992941 None:intergenic 45.0%
! TCCTAGAAGTGACTTGTGAG+GGG - chr8.2:57993585-57993604 None:intergenic 45.0%
! TGAAGATGGTAGCGATGAAC+AGG + chr8.2:57993185-57993204 MS.gene83159:CDS 45.0%
!! TGAGAGATGCTAGAGGTGTT+TGG - chr8.2:57995101-57995120 None:intergenic 45.0%
!!! AGGTTTTATTAGGCCGGGTT+GGG + chr8.2:57995520-57995539 MS.gene83159:intron 45.0%
AAGGGTGGGAGAGAAACATG+GGG - chr8.2:57995075-57995094 None:intergenic 50.0%
AGCACGTCAGTTAGACGCAT+AGG - chr8.2:57995043-57995062 None:intergenic 50.0%
ATGTAGCCAGCCCAACTTGT+AGG + chr8.2:57995779-57995798 MS.gene83159:intron 50.0%
CAAAGGGTGGGAGAGAAACA+TGG - chr8.2:57995077-57995096 None:intergenic 50.0%
CAAGCAAGGAAGCCTGAGTA+TGG - chr8.2:57995585-57995604 None:intergenic 50.0%
CATCCATCATCTCCTTCACC+TGG - chr8.2:57996173-57996192 None:intergenic 50.0%
CATGTTTCTCTCCCACCCTT+TGG + chr8.2:57995075-57995094 MS.gene83159:intron 50.0%
CCTTCGGTGAATGCTTGAAG+GGG - chr8.2:57992858-57992877 None:intergenic 50.0%
CGTCAGTTAGACGCATAGGA+TGG - chr8.2:57995039-57995058 None:intergenic 50.0%
CTGGTTTATTGAGGGGAGGA+AGG - chr8.2:57995676-57995695 None:intergenic 50.0%
GAACCAAGCAAGGACATCAG+CGG - chr8.2:57992976-57992995 None:intergenic 50.0%
GAACCGCCGTTGAAAATGAG+TGG + chr8.2:57992913-57992932 MS.gene83159:CDS 50.0%
GAATTCGTGCTCCCATACTC+AGG + chr8.2:57995570-57995589 MS.gene83159:intron 50.0%
GAGAGGTGATTGAGGTGTGA+AGG - chr8.2:57995016-57995035 None:intergenic 50.0%
GAGGGAAAGCTGGTAGGAAA+TGG - chr8.2:57994986-57995005 None:intergenic 50.0%
GATGGTCTGTTGTCTCAAGG+AGG + chr8.2:57996189-57996208 MS.gene83159:CDS 50.0%
GGTGAGGATAATCCAGGTGA+AGG + chr8.2:57996158-57996177 MS.gene83159:CDS 50.0%
GGTTTATTGAGGGGAGGAAG+GGG - chr8.2:57995674-57995693 None:intergenic 50.0%
GTTTATAAGTGGCCGAGTGG+GGG - chr8.2:57993516-57993535 None:intergenic 50.0%
GTTTATTGAGGGGAGGAAGG+GGG - chr8.2:57995673-57995692 None:intergenic 50.0%
TAGGATGGGAGAGGTGATTG+AGG - chr8.2:57995024-57995043 None:intergenic 50.0%
TCACCTGGATTATCCTCACC+TGG - chr8.2:57996158-57996177 None:intergenic 50.0%
TCCCCTCACAAGTCACTTCT+AGG + chr8.2:57993581-57993600 MS.gene83159:intron 50.0%
TGCACACCAGAATAAGCAGC+TGG - chr8.2:57994317-57994336 None:intergenic 50.0%
TTAGACGCATAGGATGGGAG+AGG - chr8.2:57995033-57995052 None:intergenic 50.0%
TTTATAAGTGGCCGAGTGGG+GGG - chr8.2:57993515-57993534 None:intergenic 50.0%
! AGCCCACTCATTTTCAACGG+CGG - chr8.2:57992919-57992938 None:intergenic 50.0%
! TCCTTTAAGCAAGGGTGCAC+CGG - chr8.2:57995494-57995513 None:intergenic 50.0%
! TGACGGAACTTGTTCCACTG+TGG + chr8.2:57995185-57995204 MS.gene83159:intron 50.0%
!! CAGGTGAAGGAGATGATGGA+TGG + chr8.2:57996171-57996190 MS.gene83159:CDS 50.0%
!! GCTAGAGGTGTTTGGCCAAA+GGG - chr8.2:57995093-57995112 None:intergenic 50.0%
!! GGTGGTCCTTGTAGCTTGTT+AGG - chr8.2:57992837-57992856 None:intergenic 50.0%
!! TGCTAGAGGTGTTTGGCCAA+AGG - chr8.2:57995094-57995113 None:intergenic 50.0%
!!! CAGGTTTTATTAGGCCGGGT+TGG + chr8.2:57995519-57995538 MS.gene83159:intron 50.0%
ACGCGCACTTTCCCAAACTC+AGG + chr8.2:57995120-57995139 MS.gene83159:intron 55.0%
AGGAAGGTGGCTAGCAAGCA+AGG - chr8.2:57995599-57995618 None:intergenic 55.0%
AGGGTGGGAGAGAAACATGG+GGG - chr8.2:57995074-57995093 None:intergenic 55.0%
CCCCTTCAAGCATTCACCGA+AGG + chr8.2:57992855-57992874 MS.gene83159:CDS 55.0%
CCTGACAGCAAGTTGCCCAA+CGG + chr8.2:57993633-57993652 MS.gene83159:intron 55.0%
CTGGGGAGAATGTAGGAAGG+TGG - chr8.2:57995612-57995631 None:intergenic 55.0%
GCCGTTGAAAATGAGTGGGC+TGG + chr8.2:57992918-57992937 MS.gene83159:CDS 55.0%
TCAGCCGGAAAATCCAGGTG+AGG + chr8.2:57996142-57996161 MS.gene83159:CDS 55.0%
TCCGGTGCACCCTTGCTTAA+AGG + chr8.2:57995490-57995509 MS.gene83159:intron 55.0%
TCGGTGAATGCTTGAAGGGG+TGG - chr8.2:57992855-57992874 None:intergenic 55.0%
! GAGGTGTTTGGCCAAAGGGT+GGG - chr8.2:57995089-57995108 None:intergenic 55.0%
! GGCAGTTAATGGGTCTCAGC+CGG + chr8.2:57996127-57996146 MS.gene83159:CDS 55.0%
!! AGAGGTGTTTGGCCAAAGGG+TGG - chr8.2:57995090-57995109 None:intergenic 55.0%
CAAGGACATCAGCGGCGAGT+TGG - chr8.2:57992968-57992987 None:intergenic 60.0%
GGGTCTCAGCCGGAAAATCC+AGG + chr8.2:57996137-57996156 MS.gene83159:CDS 60.0%
GGGTGGGAGAGAAACATGGG+GGG - chr8.2:57995073-57995092 None:intergenic 60.0%
GTGCGCGTGAGAGATGCTAG+AGG - chr8.2:57995108-57995127 None:intergenic 60.0%
TCGCCGCTGATGTCCTTGCT+TGG + chr8.2:57992970-57992989 MS.gene83159:CDS 60.0%
TGAGGGGAGGAAGGGGGTAA+TGG - chr8.2:57995667-57995686 None:intergenic 60.0%
!! CCGTTGGGCAACTTGCTGTC+AGG - chr8.2:57993636-57993655 None:intergenic 60.0%
!! CGGCGAGTTGGTGAGCTTTG+AGG - chr8.2:57992956-57992975 None:intergenic 60.0%
GTGAGGACTGTCCCCCCACT+CGG + chr8.2:57993501-57993520 MS.gene83159:intron 65.0%
! GGAGGAAGGGGGTAATGGCC+AGG - chr8.2:57995662-57995681 None:intergenic 65.0%
!! CGGTTCGGAGCGCCGACCAA+CGG - chr8.2:57992899-57992918 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 57992825 57996235 57992825 ID=MS.gene83159
chr8.2 mRNA 57992825 57996235 57992825 ID=MS.gene83159.t1;Parent=MS.gene83159
chr8.2 exon 57992825 57993008 57992825 ID=MS.gene83159.t1.exon1;Parent=MS.gene83159.t1
chr8.2 CDS 57992825 57993008 57992825 ID=cds.MS.gene83159.t1;Parent=MS.gene83159.t1
chr8.2 exon 57993118 57993206 57993118 ID=MS.gene83159.t1.exon2;Parent=MS.gene83159.t1
chr8.2 CDS 57993118 57993206 57993118 ID=cds.MS.gene83159.t1;Parent=MS.gene83159.t1
chr8.2 exon 57994227 57994340 57994227 ID=MS.gene83159.t1.exon3;Parent=MS.gene83159.t1
chr8.2 CDS 57994227 57994340 57994227 ID=cds.MS.gene83159.t1;Parent=MS.gene83159.t1
chr8.2 exon 57996008 57996235 57996008 ID=MS.gene83159.t1.exon4;Parent=MS.gene83159.t1
chr8.2 CDS 57996008 57996235 57996008 ID=cds.MS.gene83159.t1;Parent=MS.gene83159.t1
Gene Sequence

>MS.gene83159

ATGACGAATCCTAACAAGCTACAAGGACCACCCCTTCAAGCATTCACCGAAGGAATTGGTTTGGTTTTGAACCGTTGGTCGGCGCTCCGAACCGCCGTTGAAAATGAGTGGGCTGGACGTGACACTAACCTCAAAGCTCACCAACTCGCCGCTGATGTCCTTGCTTGGTTCACTCAATCCAAAGGTATTGTAATTAATCACTTAATTCCTGTTTTTTTAATTGTTTAAGCTTGAATTTTATGATATTCTGATTTTTCATTCATTGTTTTTTTTTTTTCTTTTCCTCTTCACAGAAACGCTTTATATTGATGACCTTGAAAACTTACTCTATCAAGGAGGGCTTTCTGTCAATATAGTGATTGAAGATGGTAGCGATGAACAGGTCTTCATTTTCATTTTTTATTTAAATTATGTATTTGTTTTTGGAATATTACTTTACTGGTTAATTGTTAACTTTGCTAATCAATGATTTAAACTGTGAATAATTTGGTATCACAATGCATTGTGATCTTGTAGAAGCTCCAAAGTGTTGCTCTTATAAAATTACGGTGACTTGTCGTGATTATGTCAAACTCACTATGAATCCACAAATGTTTCCTCAATTGCAGTTATAGTGATATAAAACTATTAGAATTTGGGTTGGGCCTAATTCAACCTTATAAAACCGGAATGTAAGGTGAGGACTGTCCCCCCACTCGGCCACTTATAAACAATTGTTCAGGCCATACCACTTCAAATGTGGGACTCTTAATATAATCCCCTCACAAGTCACTTCTAGGACTAGATATTTGGAGCATGATCTGAATGGCCTGACAGCAAGTTGCCCAACGGATCTTGAATAGGCTATGATACCATATAGCATTTTGGTTGGGCCTAACTCATCCTTACAAAGGGACTCATAAACAAAAGCATTGATGTTTGGCCTAAATTGAGATCATTGACCCTTCTTCTAATAACAATTTGGAAATTAGTCAAATGGGCAAACGACATTTTAGTCTTTGAATGTGTGAAGCCCTGTCAATATAGTCCCTAAACATGTTAAAATTGCAAACATGTCCCTAGTGCCTCTTTTGTTAGTAATTTTAGGGGACTAAATTGACCGAGGAAAAACACATTCAAGGACTAAATTGGCTACTTAAAAACAAATTTGATGATCAAAATGACTAATAAAAAAAACATGTGAAGATGTTTTTTGTTTTTTTTGCCATTTCGATTCATTCAGGACCAATATGACAGCAAGTTACACTTATAGGGACCAAAACAGTGATTTTCCCTTGGTCAAATAGAATTTGTGCTTTGCATGTTCTGCTGACTAGTTACTTGTTGAAGATACATGCATGTATGTTGTGTCTGCATTGTTTGCGTGTTCTTACTTTTTTTGTACATGTTTGTGATAATACAGGTAGCTGAAGACCTAATGATTATGTACGGAGAATGTTTAGAAGGTAATTTTAGCTCTGTTGAGCGTCTCAGAGAAGCTAGTCGTAATCCAGCTGCTTATTCTGGTGTGCAAAAGGTAAATTAAGGCACAATGCATTTGGAATGGAAATTAACTGTTTTATTATTAGATTTGCAATATCAAATTTGTAGGGTATGTGTTTGATTGATTTAGGATTTCAATTTCTACATGATGGCATATTTTAGGAGGAAAGAATATTGAATTATTACTTGATGTGTTGTGTGTTCTATACATTAGTCTCATTAGCATCTTTTAGTGCTCTAGAAATATCTCTTCTATGCTATATATAGATAGACACAAACTCTAGTCTTATTGGCATCCTTTGTTGGAGTACGCTAGATATGTTCTATACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACAAATTTATTGGAGTGCTGAAATGTATTCGTAAATAAGTTGAGAGTTATTATATTTCTCTGCATTAGAAATTAGGTTAAAGCTACCGTGCTTTTTGTGAGTTTATGCTTCCTTGCTTTCACTGACAAAAACAGTGAAGAGATGCGAACGTGTGTATTTAAGTTTGATAGTACTGTAAATCCTCTAATGATGAGAAATTGTTTGGAAGACGCAAGTCTAAGTTTCAGAGAGGCACTCCTTTGTCAACATAATTTTAAACAATTTTTTTCCCTGTACCATTTCCTACCAGCTTTCCCTCTGATATTCCTTCACACCTCAATCACCTCTCCCATCCTATGCGTCTAACTGACGTGCTTCTAAATCCCCCCATGTTTCTCTCCCACCCTTTGGCCAAACACCTCTAGCATCTCTCACGCGCACTTTCCCAAACTCAGGCTTAGGCCAAATATCTCCATTAGCTGTTGATACATTAGCTGTTGACGGAACTTGTTCCACTGTGGTTATTGACAGTGGTATTGAAGAATCGGATGAAAATTATAATCTTTTCTTCATGATATCTGTGATATGATATAAACTGCTCTTACACCGTGTTAAAAAGAAATGATCAACTTTAGGGACTGCTTGATACCGGGATTGAACGCTGTTGATTAAATTACTTATTCTGTCTACGAGTATGATATTATTATTTTGTTTGGCTTTTTGGATATTTAGGTTTATATAGAGGTCTTGACAGCAAAAATTTAGAGGCTTTTGATGACTCACGGAGTATTTGAGTTTGAGTTTCCGGTGCACCCTTGCTTAAAGGATATTTCAGGTTTTATTAGGCCGGGTTGGGAGAATATCCTTTCAAGAGAAGTACTCAGAATTCGTGCTCCCATACTCAGGCTTCCTTGCTTGCTAGCCACCTTCCTACATTCTCCCCAGTTTTTAAGCCATTATTTCTTTTTAATTCCTGGCCATTACCCCCTTCCTCCCCTCAATAAACCAGCTTACATCAAACCATTAATTAGATGGAAATGTTCTTTCTGTGAACCTAATATAACATTGTGTAATTGTAACTTTGATGGTTCTATGTAGCCAGCCCAACTTGTAGGAAAATACTTGGTTGTTGATTTTCTTGTGAACACCTATTGTAGTTGATTTCCTGACATGAGACTAAATGACAGTAATTGTAAATTTGTTATATATGTTAATTTAGCATTTTTGGTTTATGGATACACATTTTTCCTTGATTACACATGTCATGAGTGCAATTAGATACTTTCATTGAATAATTTTTGAACATTTTATGCTGTGCTAGATTGTGAATGGCAATGGAGACGAAGATGATGATTCTGATGATAACACTGAGGACGATAATTCAGCAAACATGGATGTGGACATTCCAAAATCCGAATCTAACTTGAATTCCATGAACAAGGCAGTTAATGGGTCTCAGCCGGAAAATCCAGGTGAGGATAATCCAGGTGAAGGAGATGATGGATGGTCTGTTGTCTCAAGGAGGAAAAATAAGGGCAGAAAGAATTAG

Protein sequence

>MS.gene83159.t1

MTNPNKLQGPPLQAFTEGIGLVLNRWSALRTAVENEWAGRDTNLKAHQLAADVLAWFTQSKETLYIDDLENLLYQGGLSVNIVIEDGSDEQVAEDLMIMYGECLEGNFSSVERLREASRNPAAYSGVQKIVNGNGDEDDDSDDNTEDDNSANMDVDIPKSESNLNSMNKAVNGSQPENPGEDNPGEGDDGWSVVSRRKNKGRKN