Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83317.t1 | XP_003619796.1 | 96 | 247 | 10 | 0 | 1 | 247 | 1 | 247 | 2.60E-139 | 504.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83317.t1 | G7KPP7 | 96.0 | 247 | 10 | 0 | 1 | 247 | 1 | 247 | 1.9e-139 | 504.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene83317 | 0.827724 | 1.34E-54 | -1.69E-46 |
| MS.gene049669 | MS.gene83317 | 0.802053 | 6.73E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene83317 | 0.817141 | 3.85E-52 | -1.69E-46 |
| MS.gene052858 | MS.gene83317 | 0.821874 | 3.20E-53 | -1.69E-46 |
| MS.gene052860 | MS.gene83317 | 0.835285 | 1.83E-56 | -1.69E-46 |
| MS.gene054479 | MS.gene83317 | 0.800161 | 1.64E-48 | -1.69E-46 |
| MS.gene056506 | MS.gene83317 | 0.818609 | 1.79E-52 | -1.69E-46 |
| MS.gene057869 | MS.gene83317 | 0.807838 | 4.16E-50 | -1.69E-46 |
| MS.gene060167 | MS.gene83317 | 0.80827 | 3.36E-50 | -1.69E-46 |
| MS.gene060683 | MS.gene83317 | 0.808142 | 3.58E-50 | -1.69E-46 |
| MS.gene060685 | MS.gene83317 | 0.806621 | 7.53E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83317.t1 | MTR_6g069050 | 95.951 | 247 | 10 | 0 | 1 | 247 | 1 | 247 | 6.79e-180 | 499 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 57 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCATTTGGTTATCATTT+AGG | 0.085330 | 6.1:+63122076 | None:intergenic |
| TTCCATTTGGTTATCATTTA+GGG | 0.185581 | 6.1:+63122077 | None:intergenic |
| TTGACTGTTAGCTGCAATTA+TGG | 0.212931 | 6.1:-63125276 | MS.gene83317:CDS |
| CAGATACTGTCTTCTGCTTT+AGG | 0.215768 | 6.1:-63125225 | MS.gene83317:CDS |
| TGTGACAGTGTTAGAGAAAA+AGG | 0.251962 | 6.1:+63125339 | None:intergenic |
| AGGCTATCGCATCCCGTCTT+TGG | 0.286432 | 6.1:-63123832 | MS.gene83317:CDS |
| CCAACGGTTGTGGGTGCATT+AGG | 0.322070 | 6.1:-63124028 | MS.gene83317:CDS |
| GAATCATTCCTTTGTTCTCT+TGG | 0.340769 | 6.1:-63124006 | MS.gene83317:CDS |
| AGATACTGTCTTCTGCTTTA+GGG | 0.352401 | 6.1:-63125224 | MS.gene83317:CDS |
| CTTGATGCATGTAAGAGAAT+TGG | 0.384957 | 6.1:-63124064 | MS.gene83317:CDS |
| GGAATGAAAAGGTTTGATCT+TGG | 0.396693 | 6.1:-63125255 | MS.gene83317:CDS |
| CTGCTTTAGGGGACACTGAT+GGG | 0.424742 | 6.1:-63125212 | MS.gene83317:CDS |
| GACAAAGAGGAGGACATAAC+AGG | 0.438405 | 6.1:-63123852 | MS.gene83317:CDS |
| TCTCCTGTATCATTTCCATT+TGG | 0.443236 | 6.1:+63122064 | None:intergenic |
| TTCCTGGGAATCATGACCTT+TGG | 0.446678 | 6.1:-63125002 | MS.gene83317:CDS |
| TCTGCTTTAGGGGACACTGA+TGG | 0.452524 | 6.1:-63125213 | MS.gene83317:CDS |
| TGATGGGTTGCGTGTGTTTG+TGG | 0.453301 | 6.1:-63125196 | MS.gene83317:CDS |
| AGAGACAAATCCAACGGTTG+TGG | 0.457003 | 6.1:-63124038 | MS.gene83317:CDS |
| GCTGCAATTATGGAATGAAA+AGG | 0.465182 | 6.1:-63125266 | MS.gene83317:CDS |
| ATCTCCATTTGAAAGTCCAT+TGG | 0.473637 | 6.1:+63122125 | None:intergenic |
| TTTGTCATCTGTGAATTATA+AGG | 0.479499 | 6.1:-63125124 | MS.gene83317:CDS |
| TAACCAAATGGAAATGATAC+AGG | 0.480184 | 6.1:-63122067 | MS.gene83317:CDS |
| CATGAAGATTGATGATTATG+AGG | 0.481207 | 6.1:+63125312 | None:intergenic |
| CCTGGGAACAAAGTGGGAAA+AGG | 0.485105 | 6.1:+63122014 | None:intergenic |
| CGTACGACAGATTAATCACC+TGG | 0.486254 | 6.1:+63121996 | None:intergenic |
| AGGACTTCCATGCATGTAGC+TGG | 0.490592 | 6.1:-63122149 | MS.gene83317:CDS |
| TCTCCATTTGAAAGTCCATT+GGG | 0.509210 | 6.1:+63122126 | None:intergenic |
| TGCCCTAAATGATAACCAAA+TGG | 0.511234 | 6.1:-63122079 | MS.gene83317:CDS |
| TGGCCCAATGGACTTTCAAA+TGG | 0.520310 | 6.1:-63122129 | MS.gene83317:CDS |
| TCGCATCCCGTCTTTGGAGA+TGG | 0.521521 | 6.1:-63123826 | MS.gene83317:intron |
| TTCACAGAGCTTTGACAAAG+AGG | 0.523921 | 6.1:-63123865 | MS.gene83317:intron |
| TGACCTTTGGTGTCGTCGCG+AGG | 0.538385 | 6.1:-63124989 | MS.gene83317:CDS |
| GATGATGTCCTTCTTGTGGC+TGG | 0.544144 | 6.1:-63125102 | MS.gene83317:CDS |
| GAGACAAATCCAACGGTTGT+GGG | 0.545127 | 6.1:-63124037 | MS.gene83317:CDS |
| CACCAAAGGTCATGATTCCC+AGG | 0.550434 | 6.1:+63125000 | None:intergenic |
| CCTAATGCACCCACAACCGT+TGG | 0.552291 | 6.1:+63124028 | None:intergenic |
| GATACTGTCTTCTGCTTTAG+GGG | 0.556395 | 6.1:-63125223 | MS.gene83317:CDS |
| GGTTAGCATTGATGGTGGTG+AGG | 0.564432 | 6.1:-63125368 | None:intergenic |
| CATGCATGTAGCTGGCCCAA+TGG | 0.582792 | 6.1:-63122141 | MS.gene83317:CDS |
| TAGTCACCATCTCCAAAGAC+GGG | 0.582917 | 6.1:+63123820 | None:intergenic |
| CATTGGGCCAGCTACATGCA+TGG | 0.584673 | 6.1:+63122142 | None:intergenic |
| TGATGAGAATTTGAAGTGGG+TGG | 0.589361 | 6.1:-63125151 | MS.gene83317:CDS |
| GACCTTTGGTGTCGTCGCGA+GGG | 0.591054 | 6.1:-63124988 | MS.gene83317:CDS |
| TTTGTTCTCTTGGTACCATG+AGG | 0.592704 | 6.1:-63123996 | MS.gene83317:intron |
| TAAGGATGATGTCCTTCTTG+TGG | 0.593180 | 6.1:-63125106 | MS.gene83317:CDS |
| CAACATCACCAGCCACAAGA+AGG | 0.597011 | 6.1:+63125094 | None:intergenic |
| TAATCACCTGGGAACAAAGT+GGG | 0.597285 | 6.1:+63122008 | None:intergenic |
| ATAGTCACCATCTCCAAAGA+CGG | 0.599612 | 6.1:+63123819 | None:intergenic |
| GTCCCTCGCGACGACACCAA+AGG | 0.601344 | 6.1:+63124986 | None:intergenic |
| ACAGAGCTTTGACAAAGAGG+AGG | 0.632307 | 6.1:-63123862 | MS.gene83317:intron |
| ATCAAAATATAAAGAGAGCG+AGG | 0.643349 | 6.1:+63122101 | None:intergenic |
| TTATGATGAGAATTTGAAGT+GGG | 0.657132 | 6.1:-63125154 | MS.gene83317:CDS |
| TGGAGTAGAGACAAATCCAA+CGG | 0.675434 | 6.1:-63124044 | MS.gene83317:CDS |
| TTAATCACCTGGGAACAAAG+TGG | 0.679999 | 6.1:+63122007 | None:intergenic |
| ATTATGATGAGAATTTGAAG+TGG | 0.681715 | 6.1:-63125155 | MS.gene83317:CDS |
| TCATGGTACCAAGAGAACAA+AGG | 0.703969 | 6.1:+63123998 | None:intergenic |
| GTACGACAGATTAATCACCT+GGG | 0.715657 | 6.1:+63121997 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAACAAATATAAGA+AGG | + | chr6.1:63125187-63125206 | None:intergenic | 10.0% |
| !!! | TATATTTGTTTTTTTTTCTT+AGG | - | chr6.1:63125190-63125209 | MS.gene83317:CDS | 10.0% |
| !! | ATGTAAAATATGAAGAAAAT+TGG | + | chr6.1:63122866-63122885 | None:intergenic | 15.0% |
| !! | TAACAAAACTGTTAATTATT+TGG | - | chr6.1:63124435-63124454 | MS.gene83317:intron | 15.0% |
| !!! | CTCAAAATAATTTTTTAAGT+GGG | - | chr6.1:63125012-63125031 | MS.gene83317:CDS | 15.0% |
| !!! | TCTCAAAATAATTTTTTAAG+TGG | - | chr6.1:63125011-63125030 | MS.gene83317:CDS | 15.0% |
| !!! | TTTAAGACAACTAAATTTAT+AGG | - | chr6.1:63124341-63124360 | MS.gene83317:intron | 15.0% |
| !! | AAATATATAGTAAAACCGAA+TGG | - | chr6.1:63123918-63123937 | MS.gene83317:intron | 20.0% |
| !! | AATGTGAATCTTAGTATTTA+TGG | - | chr6.1:63124558-63124577 | MS.gene83317:intron | 20.0% |
| !! | ACATGAGAATTATTAGAATT+TGG | + | chr6.1:63125089-63125108 | None:intergenic | 20.0% |
| !! | ATAATACCATCTTAGAATTT+GGG | + | chr6.1:63124890-63124909 | None:intergenic | 20.0% |
| !! | ATAATCAACATAATGCAATA+TGG | + | chr6.1:63122445-63122464 | None:intergenic | 20.0% |
| !! | CATGAGAATTATTAGAATTT+GGG | + | chr6.1:63125088-63125107 | None:intergenic | 20.0% |
| !! | CTTAACAAAAGATAAAACAA+AGG | - | chr6.1:63122982-63123001 | MS.gene83317:intron | 20.0% |
| !! | TACTAACTTAGAAACTTAAA+GGG | - | chr6.1:63123948-63123967 | MS.gene83317:intron | 20.0% |
| !! | TAGAACCAATACAATAATAA+GGG | - | chr6.1:63124534-63124553 | MS.gene83317:intron | 20.0% |
| !! | TATAATACCATCTTAGAATT+TGG | + | chr6.1:63124891-63124910 | None:intergenic | 20.0% |
| !! | TTTATGCTAATTTCTGTTAT+GGG | - | chr6.1:63123674-63123693 | MS.gene83317:intron | 20.0% |
| !!! | ATTTAGGATCAAAAGTTATT+CGG | - | chr6.1:63124120-63124139 | MS.gene83317:intron | 20.0% |
| !!! | CTTTGTTTTATCTTTTGTTA+AGG | + | chr6.1:63122984-63123003 | None:intergenic | 20.0% |
| !!! | CTTTTAAAGATCAATCTAAT+TGG | + | chr6.1:63124197-63124216 | None:intergenic | 20.0% |
| !!! | TAATCTAGTTCAAAGTTATT+GGG | + | chr6.1:63123988-63124007 | None:intergenic | 20.0% |
| !!! | TTTTATGTAAGTTAAGTGTT+TGG | - | chr6.1:63124374-63124393 | MS.gene83317:intron | 20.0% |
| ! | AAGATTGCAACAAAGTTTAT+GGG | + | chr6.1:63123218-63123237 | None:intergenic | 25.0% |
| ! | AATCAAAAGTGATTCTTTAG+GGG | - | chr6.1:63123454-63123473 | MS.gene83317:intron | 25.0% |
| ! | ACTAAATTTATAGGTCACAA+TGG | - | chr6.1:63124350-63124369 | MS.gene83317:intron | 25.0% |
| ! | ATAAAACTTAGAATTTGGGT+CGG | + | chr6.1:63124698-63124717 | None:intergenic | 25.0% |
| ! | ATATTCATTCTCTCAGATTT+AGG | + | chr6.1:63124308-63124327 | None:intergenic | 25.0% |
| ! | ATTATGATGAGAATTTGAAG+TGG | - | chr6.1:63122213-63122232 | MS.gene83317:intron | 25.0% |
| ! | CATTACCCTTATTATTGTAT+TGG | + | chr6.1:63124542-63124561 | None:intergenic | 25.0% |
| ! | CCCAATAAAACTTAGAATTT+GGG | + | chr6.1:63124702-63124721 | None:intergenic | 25.0% |
| ! | CTACTAACTTAGAAACTTAA+AGG | - | chr6.1:63123947-63123966 | MS.gene83317:intron | 25.0% |
| ! | CTGAAAATGAGTTTATAAGT+GGG | - | chr6.1:63124814-63124833 | MS.gene83317:intron | 25.0% |
| ! | CTTTATGCTAATTTCTGTTA+TGG | - | chr6.1:63123673-63123692 | MS.gene83317:intron | 25.0% |
| ! | GAATCAAAAGTGATTCTTTA+GGG | - | chr6.1:63123453-63123472 | MS.gene83317:intron | 25.0% |
| ! | GGAAAATAAACAAATAGCAT+AGG | + | chr6.1:63125166-63125185 | None:intergenic | 25.0% |
| ! | GTAGAACCAATACAATAATA+AGG | - | chr6.1:63124533-63124552 | MS.gene83317:intron | 25.0% |
| ! | GTATAGACTTAAAACAAGAT+TGG | + | chr6.1:63124507-63124526 | None:intergenic | 25.0% |
| ! | TATTCATTCTCTCAGATTTA+GGG | + | chr6.1:63124307-63124326 | None:intergenic | 25.0% |
| ! | TCCTAAATCGAATTCTTATA+AGG | + | chr6.1:63124108-63124127 | None:intergenic | 25.0% |
| ! | TCCTTATAAGAATTCGATTT+AGG | - | chr6.1:63124104-63124123 | MS.gene83317:intron | 25.0% |
| ! | TGAATCAAAAGTGATTCTTT+AGG | - | chr6.1:63123452-63123471 | MS.gene83317:intron | 25.0% |
| ! | TTAATTCCATGAACGTATTT+AGG | - | chr6.1:63122840-63122859 | MS.gene83317:intron | 25.0% |
| ! | TTCCATTTGGTTATCATTTA+GGG | + | chr6.1:63125294-63125313 | None:intergenic | 25.0% |
| ! | TTGAGTTATTTAAGCTTATC+CGG | + | chr6.1:63123120-63123139 | None:intergenic | 25.0% |
| ! | TTTCCATTTGGTTATCATTT+AGG | + | chr6.1:63125295-63125314 | None:intergenic | 25.0% |
| ! | TTTGTCATCTGTGAATTATA+AGG | - | chr6.1:63122244-63122263 | MS.gene83317:intron | 25.0% |
| !! | AGATTGATCTTTAAAAGTGT+CGG | - | chr6.1:63124200-63124219 | MS.gene83317:intron | 25.0% |
| !! | ATTCAAAAAACGTTGATTGA+TGG | - | chr6.1:63123594-63123613 | MS.gene83317:intron | 25.0% |
| !! | CTAATCTAGTTCAAAGTTAT+TGG | + | chr6.1:63123989-63124008 | None:intergenic | 25.0% |
| !! | TTATGATGAGAATTTGAAGT+GGG | - | chr6.1:63122214-63122233 | MS.gene83317:intron | 25.0% |
| !! | TTTCTGTTGGGTTTAATTTA+AGG | - | chr6.1:63122897-63122916 | MS.gene83317:intron | 25.0% |
| !! | TTTTGTTAACAGTTACTACT+GGG | + | chr6.1:63124423-63124442 | None:intergenic | 25.0% |
| !!! | ACCCAAATTCTAAGTTTTAT+TGG | - | chr6.1:63124698-63124717 | MS.gene83317:intron | 25.0% |
| !!! | ATCAATCAACGTTTTTTGAA+TGG | + | chr6.1:63123595-63123614 | None:intergenic | 25.0% |
| !!! | CCCAAATTCTAAGTTTTATT+GGG | - | chr6.1:63124699-63124718 | MS.gene83317:intron | 25.0% |
| !!! | TGTGTGAATTTTAACTTTCA+GGG | - | chr6.1:63123706-63123725 | MS.gene83317:intron | 25.0% |
| !!! | TGTTTTAAGTCTATACCTAT+TGG | - | chr6.1:63124511-63124530 | MS.gene83317:intron | 25.0% |
| !!! | TTTTTTTTCTTAGGCTTGTA+AGG | - | chr6.1:63125199-63125218 | MS.gene83317:CDS | 25.0% |
| AAACAAATAGCATAGGTGTT+AGG | + | chr6.1:63125159-63125178 | None:intergenic | 30.0% | |
| AATTGTCAAATACTACACTC+GGG | + | chr6.1:63122521-63122540 | None:intergenic | 30.0% | |
| AGACCATATCTCATACAATA+TGG | + | chr6.1:63124614-63124633 | None:intergenic | 30.0% | |
| AGAGAATGAATATGATGCAA+TGG | - | chr6.1:63124315-63124334 | MS.gene83317:intron | 30.0% | |
| ATCAAAATATAAAGAGAGCG+AGG | + | chr6.1:63125270-63125289 | None:intergenic | 30.0% | |
| ATTAAACCCAACAGAAAATC+AGG | + | chr6.1:63122894-63122913 | None:intergenic | 30.0% | |
| CAATTGTCAAATACTACACT+CGG | + | chr6.1:63122522-63122541 | None:intergenic | 30.0% | |
| CATATCTCATACAATATGGT+GGG | + | chr6.1:63124610-63124629 | None:intergenic | 30.0% | |
| CCTGAAAATGAGTTTATAAG+TGG | - | chr6.1:63124813-63124832 | MS.gene83317:intron | 30.0% | |
| GAAGATTGCAACAAAGTTTA+TGG | + | chr6.1:63123219-63123238 | None:intergenic | 30.0% | |
| GAGATAGGTCAAGAAATTAA+TGG | - | chr6.1:63124241-63124260 | MS.gene83317:intron | 30.0% | |
| GCCCAATAAAACTTAGAATT+TGG | + | chr6.1:63124703-63124722 | None:intergenic | 30.0% | |
| TAACCAAATGGAAATGATAC+AGG | - | chr6.1:63125301-63125320 | MS.gene83317:CDS | 30.0% | |
| TAGTATTTGACAATTGTCCA+AGG | - | chr6.1:63122526-63122545 | MS.gene83317:intron | 30.0% | |
| TCAATGGCATTACATAATAG+AGG | - | chr6.1:63123887-63123906 | MS.gene83317:intron | 30.0% | |
| TGAGTTGTTAACTTAGGTTT+AGG | + | chr6.1:63124038-63124057 | None:intergenic | 30.0% | |
| TTAAACCCAACAGAAAATCA+GGG | + | chr6.1:63122893-63122912 | None:intergenic | 30.0% | |
| TTACTGTGTGTTAACAGTAT+AGG | - | chr6.1:63123826-63123845 | MS.gene83317:intron | 30.0% | |
| TTTCAGACAGAATAACAAAC+AGG | - | chr6.1:63123850-63123869 | MS.gene83317:CDS | 30.0% | |
| ! | AAAGCTTGAGTTGTTAACTT+AGG | + | chr6.1:63124044-63124063 | None:intergenic | 30.0% |
| ! | AACATGTTTTCTATGTTCCT+GGG | - | chr6.1:63122351-63122370 | MS.gene83317:intron | 30.0% |
| ! | ATCTAATTGGCAGCATTTTA+TGG | + | chr6.1:63124184-63124203 | None:intergenic | 30.0% |
| ! | CAACAGTAAGCAACATTTTT+AGG | + | chr6.1:63123772-63123791 | None:intergenic | 30.0% |
| ! | CATGAAGATTGATGATTATG+AGG | + | chr6.1:63122059-63122078 | None:intergenic | 30.0% |
| ! | CCACTTATAAACTCATTTTC+AGG | + | chr6.1:63124816-63124835 | None:intergenic | 30.0% |
| ! | TGGGTTTAATTTAAGGTGAA+GGG | - | chr6.1:63122904-63122923 | MS.gene83317:intron | 30.0% |
| ! | TTGACACAAACATAGCTTTT+AGG | - | chr6.1:63122465-63122484 | MS.gene83317:intron | 30.0% |
| ! | TTGGGTTTAATTTAAGGTGA+AGG | - | chr6.1:63122903-63122922 | MS.gene83317:intron | 30.0% |
| !! | ATTGTATTGGTTCTACCAAT+AGG | + | chr6.1:63124529-63124548 | None:intergenic | 30.0% |
| !! | GTTTTGTTAACAGTTACTAC+TGG | + | chr6.1:63124424-63124443 | None:intergenic | 30.0% |
| !! | TAAAAGTGTCGGAAATTCTT+CGG | - | chr6.1:63124211-63124230 | MS.gene83317:intron | 30.0% |
| !!! | AAGGTTTTAAATTGCGGTAA+CGG | + | chr6.1:63122701-63122720 | None:intergenic | 30.0% |
| !!! | CGATGAAAGGTTTTAAATTG+CGG | + | chr6.1:63122707-63122726 | None:intergenic | 30.0% |
| !!! | GTGTGTGAATTTTAACTTTC+AGG | - | chr6.1:63123705-63123724 | MS.gene83317:intron | 30.0% |
| AAACACTCACAAGACTGTTT+GGG | + | chr6.1:63123091-63123110 | None:intergenic | 35.0% | |
| AAAGTCCCGTGTTTAAATTC+TGG | - | chr6.1:63122557-63122576 | MS.gene83317:intron | 35.0% | |
| AATAAGACTACTGCGATGAA+AGG | + | chr6.1:63122720-63122739 | None:intergenic | 35.0% | |
| AGACTATATCTCATCCAATG+TGG | + | chr6.1:63124994-63125013 | None:intergenic | 35.0% | |
| AGATACTGTCTTCTGCTTTA+GGG | - | chr6.1:63122144-63122163 | MS.gene83317:CDS | 35.0% | |
| AGTTAGTAGTCTAGTCCATT+CGG | + | chr6.1:63123936-63123955 | None:intergenic | 35.0% | |
| AGTTATTTAAGCTTATCCGG+TGG | + | chr6.1:63123117-63123136 | None:intergenic | 35.0% | |
| ATCTCCATTTGAAAGTCCAT+TGG | + | chr6.1:63125246-63125265 | None:intergenic | 35.0% | |
| ATGTAAGTTAAGTGTTTGGC+AGG | - | chr6.1:63124378-63124397 | MS.gene83317:intron | 35.0% | |
| CAAACTTAACCCTACAAAAC+CGG | + | chr6.1:63124673-63124692 | None:intergenic | 35.0% | |
| CATTAGTTCCTCAAAGATTG+AGG | - | chr6.1:63122745-63122764 | MS.gene83317:intron | 35.0% | |
| CCACCATATTGTATGAGATA+TGG | - | chr6.1:63124608-63124627 | MS.gene83317:intron | 35.0% | |
| CCATATCTCATACAATATGG+TGG | + | chr6.1:63124611-63124630 | None:intergenic | 35.0% | |
| CGAAGAATTGCAGTAAAATC+CGG | + | chr6.1:63122649-63122668 | None:intergenic | 35.0% | |
| CGTCATCCAGAATTTAAACA+CGG | + | chr6.1:63122566-63122585 | None:intergenic | 35.0% | |
| CTAACTCAACCATACAAAAC+CGG | + | chr6.1:63125059-63125078 | None:intergenic | 35.0% | |
| CTTGATGCATGTAAGAGAAT+TGG | - | chr6.1:63123304-63123323 | MS.gene83317:intron | 35.0% | |
| GAATCATTCCTTTGTTCTCT+TGG | - | chr6.1:63123362-63123381 | MS.gene83317:intron | 35.0% | |
| GACTATATCTCATCCAATGT+GGG | + | chr6.1:63124993-63125012 | None:intergenic | 35.0% | |
| GCAATATGGACAGAATGATA+AGG | + | chr6.1:63122431-63122450 | None:intergenic | 35.0% | |
| GCACATGGTATGAAAGATTA+AGG | + | chr6.1:63123427-63123446 | None:intergenic | 35.0% | |
| GCAGCATAAAGAGAAATTAG+CGG | + | chr6.1:63124162-63124181 | None:intergenic | 35.0% | |
| GCTGCAATTATGGAATGAAA+AGG | - | chr6.1:63122102-63122121 | MS.gene83317:CDS | 35.0% | |
| GGAATGAAAAGGTTTGATCT+TGG | - | chr6.1:63122113-63122132 | MS.gene83317:CDS | 35.0% | |
| GTCATCCAGAATTTAAACAC+GGG | + | chr6.1:63122565-63122584 | None:intergenic | 35.0% | |
| GTGACAGTGTTAGAGAAAAA+GGG | + | chr6.1:63122031-63122050 | None:intergenic | 35.0% | |
| TAAACACTCACAAGACTGTT+TGG | + | chr6.1:63123092-63123111 | None:intergenic | 35.0% | |
| TAATCTTTCATACCATGTGC+TGG | - | chr6.1:63123427-63123446 | MS.gene83317:intron | 35.0% | |
| TAGAAACTTAAAGGGCCAAA+TGG | - | chr6.1:63123956-63123975 | MS.gene83317:intron | 35.0% | |
| TAGTCTATCCAAGATCTACT+AGG | - | chr6.1:63124909-63124928 | MS.gene83317:intron | 35.0% | |
| TATGGTCTGAAGATGAGTTT+AGG | - | chr6.1:63124626-63124645 | MS.gene83317:intron | 35.0% | |
| TCTCCATTTGAAAGTCCATT+GGG | + | chr6.1:63125245-63125264 | None:intergenic | 35.0% | |
| TCTCCTGTATCATTTCCATT+TGG | + | chr6.1:63125307-63125326 | None:intergenic | 35.0% | |
| TGCCCTAAATGATAACCAAA+TGG | - | chr6.1:63125289-63125308 | MS.gene83317:CDS | 35.0% | |
| TGTGACAGTGTTAGAGAAAA+AGG | + | chr6.1:63122032-63122051 | None:intergenic | 35.0% | |
| TTCTTCGGAAAATGAGAGAT+AGG | - | chr6.1:63124226-63124245 | MS.gene83317:intron | 35.0% | |
| TTGACTGTTAGCTGCAATTA+TGG | - | chr6.1:63122092-63122111 | MS.gene83317:CDS | 35.0% | |
| ! | AATTGGCCTAAATACGTTCA+TGG | + | chr6.1:63122849-63122868 | None:intergenic | 35.0% |
| ! | ACCATCTTAGAATTTGGGTT+AGG | + | chr6.1:63124885-63124904 | None:intergenic | 35.0% |
| ! | CGGGACTTTATTTAAAACCT+TGG | + | chr6.1:63122546-63122565 | None:intergenic | 35.0% |
| ! | CTCAATCTTTGAGGAACTAA+TGG | + | chr6.1:63122747-63122766 | None:intergenic | 35.0% |
| ! | GAACATGTTTTCTATGTTCC+TGG | - | chr6.1:63122350-63122369 | MS.gene83317:intron | 35.0% |
| ! | GCTGATTTCATAAGCTATCA+TGG | - | chr6.1:63123030-63123049 | MS.gene83317:intron | 35.0% |
| !! | ACCTTATAAGTCGGTTTTGT+GGG | - | chr6.1:63124848-63124867 | MS.gene83317:intron | 35.0% |
| !! | ACTTTTCAAGAGAATCAACC+TGG | + | chr6.1:63123273-63123292 | None:intergenic | 35.0% |
| !! | TTTTGATTCAATCCAGCACA+TGG | + | chr6.1:63123442-63123461 | None:intergenic | 35.0% |
| !!! | CGTTTTTTGAATGGCTTACT+AGG | + | chr6.1:63123586-63123605 | None:intergenic | 35.0% |
| !!! | GTTTTTGCTGATTTTTCTCC+AGG | - | chr6.1:63123252-63123271 | MS.gene83317:intron | 35.0% |
| AAATCGTTCACCTTACAAGC+CGG | - | chr6.1:63125037-63125056 | MS.gene83317:CDS | 40.0% | |
| AAGAGTCCCACATTGGATTA+GGG | - | chr6.1:63124786-63124805 | MS.gene83317:intron | 40.0% | |
| AATTCTGGATGACGACATCA+AGG | - | chr6.1:63122572-63122591 | MS.gene83317:intron | 40.0% | |
| ACATCCATCACACCTAAAAC+TGG | + | chr6.1:63124763-63124782 | None:intergenic | 40.0% | |
| AGAAATTAGCGGTGTATTGC+AGG | + | chr6.1:63124151-63124170 | None:intergenic | 40.0% | |
| AGAATAACAAACAGGCAGCT+AGG | - | chr6.1:63123858-63123877 | MS.gene83317:CDS | 40.0% | |
| AGATTTAGGGAAAGAGACAC+TGG | + | chr6.1:63124294-63124313 | None:intergenic | 40.0% | |
| AGTCCTTAATCAAGCACCAT+GGG | + | chr6.1:63123640-63123659 | None:intergenic | 40.0% | |
| ATAGTCACCATCTCCAAAGA+CGG | + | chr6.1:63123552-63123571 | None:intergenic | 40.0% | |
| ATCATGCGCTTAATTTCCCA+TGG | - | chr6.1:63123621-63123640 | MS.gene83317:intron | 40.0% | |
| ATGTCTCGACAATCACAAAG+TGG | - | chr6.1:63122601-63122620 | MS.gene83317:intron | 40.0% | |
| ATGTGTTAAGAGTCCCACAT+TGG | - | chr6.1:63124779-63124798 | MS.gene83317:intron | 40.0% | |
| CAAAGACACCTCAATCTTTG+AGG | + | chr6.1:63122756-63122775 | None:intergenic | 40.0% | |
| CAAATACAGACGTGCACTAA+AGG | + | chr6.1:63123153-63123172 | None:intergenic | 40.0% | |
| CAACAAAGTTTATGGGAACG+AGG | + | chr6.1:63123211-63123230 | None:intergenic | 40.0% | |
| CAGATACTGTCTTCTGCTTT+AGG | - | chr6.1:63122143-63122162 | MS.gene83317:CDS | 40.0% | |
| CTACAGAAGTAATCACCTCA+TGG | + | chr6.1:63123390-63123409 | None:intergenic | 40.0% | |
| GAAATTAGCGGTGTATTGCA+GGG | + | chr6.1:63124150-63124169 | None:intergenic | 40.0% | |
| GAATAACAAACAGGCAGCTA+GGG | - | chr6.1:63123859-63123878 | MS.gene83317:CDS | 40.0% | |
| GATACTGTCTTCTGCTTTAG+GGG | - | chr6.1:63122145-63122164 | MS.gene83317:CDS | 40.0% | |
| GATGCTTCAATCACAAGTCA+AGG | + | chr6.1:63124080-63124099 | None:intergenic | 40.0% | |
| GCGAGGGACAAAATTATGTA+AGG | - | chr6.1:63122396-63122415 | MS.gene83317:intron | 40.0% | |
| GGTGATTACTTCTGTAGTGT+CGG | - | chr6.1:63123393-63123412 | MS.gene83317:intron | 40.0% | |
| GTGTGTTAAGAATCCCACAT+TGG | - | chr6.1:63124977-63124996 | MS.gene83317:intron | 40.0% | |
| TAAGAGTCCCACATTGGATT+AGG | - | chr6.1:63124785-63124804 | MS.gene83317:intron | 40.0% | |
| TAAGGATGATGTCCTTCTTG+TGG | - | chr6.1:63122262-63122281 | MS.gene83317:intron | 40.0% | |
| TAGTCCTTAATCAAGCACCA+TGG | + | chr6.1:63123641-63123660 | None:intergenic | 40.0% | |
| TCATGGTACCAAGAGAACAA+AGG | + | chr6.1:63123373-63123392 | None:intergenic | 40.0% | |
| TGGAGTAGAGACAAATCCAA+CGG | - | chr6.1:63123324-63123343 | MS.gene83317:intron | 40.0% | |
| TTTCCCATGGTGCTTGATTA+AGG | - | chr6.1:63123634-63123653 | MS.gene83317:intron | 40.0% | |
| TTTGTTCTCTTGGTACCATG+AGG | - | chr6.1:63123372-63123391 | MS.gene83317:intron | 40.0% | |
| ! | ATTGCACCCTGATTTTCTGT+TGG | - | chr6.1:63122884-63122903 | MS.gene83317:intron | 40.0% |
| ! | CACAAAGTGGCTTGTGATTA+AGG | - | chr6.1:63122614-63122633 | MS.gene83317:intron | 40.0% |
| ! | GCCTAACCCAAATTCTAAGA+TGG | - | chr6.1:63124881-63124900 | MS.gene83317:intron | 40.0% |
| ! | TGATGAGAATTTGAAGTGGG+TGG | - | chr6.1:63122217-63122236 | MS.gene83317:intron | 40.0% |
| ! | TTCACAGAGCTTTGACAAAG+AGG | - | chr6.1:63123503-63123522 | MS.gene83317:intron | 40.0% |
| ! | TTGCACCCTGATTTTCTGTT+GGG | - | chr6.1:63122885-63122904 | MS.gene83317:intron | 40.0% |
| !! | AAAACCGGCTTGTAAGATGA+GGG | + | chr6.1:63124658-63124677 | None:intergenic | 40.0% |
| !! | ATCTTACAAGCCGGTTTTGT+AGG | - | chr6.1:63124660-63124679 | MS.gene83317:intron | 40.0% |
| !! | CACCTTATAAGTCGGTTTTG+TGG | - | chr6.1:63124847-63124866 | MS.gene83317:intron | 40.0% |
| !! | CCTTATAAGTCGGTTTTGTG+GGG | - | chr6.1:63124849-63124868 | MS.gene83317:intron | 40.0% |
| !! | CGGTTTTGTAGGGTTAAGTT+TGG | - | chr6.1:63124671-63124690 | MS.gene83317:intron | 40.0% |
| !! | CGGTTTTGTATGGTTGAGTT+AGG | - | chr6.1:63125057-63125076 | MS.gene83317:CDS | 40.0% |
| !! | TCTTACAAGCCGGTTTTGTA+GGG | - | chr6.1:63124661-63124680 | MS.gene83317:intron | 40.0% |
| !!! | GTGTCTTTGTTTTAGTCGTC+TGG | - | chr6.1:63122767-63122786 | MS.gene83317:intron | 40.0% |
| AACGAGGAAAGCAGTAAGTC+TGG | + | chr6.1:63123195-63123214 | None:intergenic | 45.0% | |
| ACATCCCTCATCTTACAAGC+CGG | - | chr6.1:63124651-63124670 | MS.gene83317:intron | 45.0% | |
| AGAGACAAATCCAACGGTTG+TGG | - | chr6.1:63123330-63123349 | MS.gene83317:intron | 45.0% | |
| CTTAAAGGGCCAAATGGCAT+AGG | - | chr6.1:63123962-63123981 | MS.gene83317:intron | 45.0% | |
| CTTGTGAGTGTTTATGCCAC+CGG | - | chr6.1:63123098-63123117 | MS.gene83317:intron | 45.0% | |
| GAAAGTGACATGCTTTGTGC+TGG | - | chr6.1:63123795-63123814 | MS.gene83317:intron | 45.0% | |
| GACAAAGAGGAGGACATAAC+AGG | - | chr6.1:63123516-63123535 | MS.gene83317:intron | 45.0% | |
| GAGACAAATCCAACGGTTGT+GGG | - | chr6.1:63123331-63123350 | MS.gene83317:intron | 45.0% | |
| GCCTCTCTCACCTTATAAGT+CGG | - | chr6.1:63124839-63124858 | MS.gene83317:intron | 45.0% | |
| GGATGGAGTGACCTGATAAT+GGG | + | chr6.1:63124938-63124957 | None:intergenic | 45.0% | |
| GGTGAAGGGATAGATAGCTT+AGG | - | chr6.1:63122918-63122937 | MS.gene83317:intron | 45.0% | |
| GTTATTGGGCCTATGCCATT+TGG | + | chr6.1:63123974-63123993 | None:intergenic | 45.0% | |
| TACACTCGGGACTAAATCGA+GGG | + | chr6.1:63122508-63122527 | None:intergenic | 45.0% | |
| TAGTCACCATCTCCAAAGAC+GGG | + | chr6.1:63123551-63123570 | None:intergenic | 45.0% | |
| TCACACCTAAAACTGGACTC+TGG | + | chr6.1:63124756-63124775 | None:intergenic | 45.0% | |
| TGGATGGAGTGACCTGATAA+TGG | + | chr6.1:63124939-63124958 | None:intergenic | 45.0% | |
| TTCCTGGGAATCATGACCTT+TGG | - | chr6.1:63122366-63122385 | MS.gene83317:intron | 45.0% | |
| TTTATTGGGCCACCCGTTAT+CGG | - | chr6.1:63124713-63124732 | MS.gene83317:intron | 45.0% | |
| ! | ACAGAGCTTTGACAAAGAGG+AGG | - | chr6.1:63123506-63123525 | MS.gene83317:intron | 45.0% |
| ! | ACCGACTTATAAGGTGAGAG+AGG | + | chr6.1:63124843-63124862 | None:intergenic | 45.0% |
| ! | ACGTGCACTAAAGGCTTGTT+TGG | + | chr6.1:63123144-63123163 | None:intergenic | 45.0% |
| ! | CCCCACAAAACCGACTTATA+AGG | + | chr6.1:63124852-63124871 | None:intergenic | 45.0% |
| ! | TGGCCCAATGGACTTTCAAA+TGG | - | chr6.1:63125239-63125258 | MS.gene83317:CDS | 45.0% |
| !! | CAAAACCGGCTTGTAAGATG+AGG | + | chr6.1:63124659-63124678 | None:intergenic | 45.0% |
| !! | CCATACAAAACCGGCTTGTA+AGG | + | chr6.1:63125050-63125069 | None:intergenic | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+TGG | - | chr6.1:63125047-63125066 | MS.gene83317:CDS | 45.0% |
| !! | GGCAGCTAGGGTTTTATCAA+TGG | - | chr6.1:63123871-63123890 | MS.gene83317:intron | 45.0% |
| !!! | GAGTCCAGTTTTAGGTGTGA+TGG | - | chr6.1:63124756-63124775 | MS.gene83317:intron | 45.0% |
| AGGACTTCCATGCATGTAGC+TGG | - | chr6.1:63125219-63125238 | MS.gene83317:CDS | 50.0% | |
| AGGCCATCCCTAATCCAATG+TGG | + | chr6.1:63124796-63124815 | None:intergenic | 50.0% | |
| AGGTCACTCCATCCAGTCTT+GGG | - | chr6.1:63124944-63124963 | MS.gene83317:intron | 50.0% | |
| ATGGGTGGCCTAGTAGATCT+TGG | + | chr6.1:63124920-63124939 | None:intergenic | 50.0% | |
| CAACATCACCAGCCACAAGA+AGG | + | chr6.1:63122277-63122296 | None:intergenic | 50.0% | |
| CACCAAAGGTCATGATTCCC+AGG | + | chr6.1:63122371-63122390 | None:intergenic | 50.0% | |
| CCTGGGAACAAAGTGGGAAA+AGG | + | chr6.1:63125357-63125376 | None:intergenic | 50.0% | |
| CTACACTCGGGACTAAATCG+AGG | + | chr6.1:63122509-63122528 | None:intergenic | 50.0% | |
| CTACTAGGCCACCCATTATC+AGG | - | chr6.1:63124924-63124943 | MS.gene83317:intron | 50.0% | |
| GATGATGTCCTTCTTGTGGC+TGG | - | chr6.1:63122266-63122285 | MS.gene83317:intron | 50.0% | |
| GGCCATCCCTAATCCAATGT+GGG | + | chr6.1:63124795-63124814 | None:intergenic | 50.0% | |
| GTGATTAAGGCTGCATCAGC+CGG | - | chr6.1:63122627-63122646 | MS.gene83317:intron | 50.0% | |
| TGATCCGAGTGGTCCGATAA+CGG | + | chr6.1:63124729-63124748 | None:intergenic | 50.0% | |
| ! | ACGCTCCAGAGTCCAGTTTT+AGG | - | chr6.1:63124748-63124767 | MS.gene83317:intron | 50.0% |
| ! | CCTTTTCCCACTTTGTTCCC+AGG | - | chr6.1:63125354-63125373 | MS.gene83317:CDS | 50.0% |
| ! | GTCCCACATTGGATTAGGGA+TGG | - | chr6.1:63124790-63124809 | MS.gene83317:intron | 50.0% |
| ! | TGACATGCTTTGTGCTGGTC+TGG | - | chr6.1:63123800-63123819 | MS.gene83317:intron | 50.0% |
| !! | CGGTTTTGTGGGGTCAAGTA+AGG | - | chr6.1:63124859-63124878 | MS.gene83317:intron | 50.0% |
| !! | CTGCTTTAGGGGACACTGAT+GGG | - | chr6.1:63122156-63122175 | MS.gene83317:CDS | 50.0% |
| !! | TCTGCTTTAGGGGACACTGA+TGG | - | chr6.1:63122155-63122174 | MS.gene83317:CDS | 50.0% |
| !! | TGATGGGTTGCGTGTGTTTG+TGG | - | chr6.1:63122172-63122191 | MS.gene83317:intron | 50.0% |
| !! | TGGAGTGACCTGATAATGGG+TGG | + | chr6.1:63124935-63124954 | None:intergenic | 50.0% |
| ACATCCCTCACACCCAAGAC+TGG | + | chr6.1:63124959-63124978 | None:intergenic | 55.0% | |
| AGGCTATCGCATCCCGTCTT+TGG | - | chr6.1:63123536-63123555 | MS.gene83317:intron | 55.0% | |
| CAGGTCACTCCATCCAGTCT+TGG | - | chr6.1:63124943-63124962 | MS.gene83317:intron | 55.0% | |
| CATGCATGTAGCTGGCCCAA+TGG | - | chr6.1:63125227-63125246 | MS.gene83317:CDS | 55.0% | |
| CATTGGGCCAGCTACATGCA+TGG | + | chr6.1:63125229-63125248 | None:intergenic | 55.0% | |
| CCAACGGTTGTGGGTGCATT+AGG | - | chr6.1:63123340-63123359 | MS.gene83317:intron | 55.0% | |
| CCATCCAGTCTTGGGTGTGA+GGG | - | chr6.1:63124952-63124971 | MS.gene83317:intron | 55.0% | |
| CCTAATGCACCCACAACCGT+TGG | + | chr6.1:63123343-63123362 | None:intergenic | 55.0% | |
| GATCCGAGTGGTCCGATAAC+GGG | + | chr6.1:63124728-63124747 | None:intergenic | 55.0% | |
| TCCATCCAGTCTTGGGTGTG+AGG | - | chr6.1:63124951-63124970 | MS.gene83317:intron | 55.0% | |
| ! | TCGCATCCCGTCTTTGGAGA+TGG | - | chr6.1:63123542-63123561 | MS.gene83317:intron | 55.0% |
| CCACCCGTTATCGGACCACT+CGG | - | chr6.1:63124722-63124741 | MS.gene83317:intron | 60.0% | |
| CCCTCACACCCAAGACTGGA+TGG | + | chr6.1:63124955-63124974 | None:intergenic | 60.0% | |
| !! | ACTCTGGAGCGTGATCCGAG+TGG | + | chr6.1:63124740-63124759 | None:intergenic | 60.0% |
| !! | GACCTTTGGTGTCGTCGCGA+GGG | - | chr6.1:63122380-63122399 | MS.gene83317:intron | 60.0% |
| !! | TGACCTTTGGTGTCGTCGCG+AGG | - | chr6.1:63122379-63122398 | MS.gene83317:intron | 60.0% |
| GTCCCTCGCGACGACACCAA+AGG | + | chr6.1:63122385-63122404 | None:intergenic | 65.0% | |
| !! | CCGAGTGGTCCGATAACGGG+TGG | + | chr6.1:63124725-63124744 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 63122011 | 63125379 | 63122011 | ID=MS.gene83317 |
| chr6.1 | mRNA | 63122011 | 63125379 | 63122011 | ID=MS.gene83317.t1;Parent=MS.gene83317 |
| chr6.1 | exon | 63124978 | 63125379 | 63124978 | ID=MS.gene83317.t1.exon1;Parent=MS.gene83317.t1 |
| chr6.1 | CDS | 63124978 | 63125379 | 63124978 | ID=cds.MS.gene83317.t1;Parent=MS.gene83317.t1 |
| chr6.1 | exon | 63123997 | 63124116 | 63123997 | ID=MS.gene83317.t1.exon2;Parent=MS.gene83317.t1 |
| chr6.1 | CDS | 63123997 | 63124116 | 63123997 | ID=cds.MS.gene83317.t1;Parent=MS.gene83317.t1 |
| chr6.1 | exon | 63123827 | 63123880 | 63123827 | ID=MS.gene83317.t1.exon3;Parent=MS.gene83317.t1 |
| chr6.1 | CDS | 63123827 | 63123880 | 63123827 | ID=cds.MS.gene83317.t1;Parent=MS.gene83317.t1 |
| chr6.1 | exon | 63122011 | 63122178 | 63122011 | ID=MS.gene83317.t1.exon4;Parent=MS.gene83317.t1 |
| chr6.1 | CDS | 63122011 | 63122178 | 63122011 | ID=cds.MS.gene83317.t1;Parent=MS.gene83317.t1 |
| Gene Sequence |
| Protein sequence |
