AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene83618

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83618.t1 AT5G12010 59.535 430 148 4 1 417 86 502 0.0 532
MS.gene83618.t1 AT4G29780 59.620 421 164 4 1 417 122 540 1.73e-176 504
MS.gene83618.t1 AT3G55350 30.061 326 189 9 76 374 53 366 5.20e-43 155
MS.gene83618.t1 AT3G63270 29.618 314 188 10 76 363 43 349 1.18e-38 144
MS.gene83618.t1 AT3G19120 27.362 307 191 9 88 376 114 406 7.78e-25 106
MS.gene83618.t1 AT1G72275 26.797 306 162 14 88 374 92 354 5.23e-19 89.0
MS.gene83618.t1 AT1G72275 26.797 306 162 14 88 374 92 354 5.90e-19 88.6

Find 101 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTTCAAATTTCCTAATT+TGG 0.108987 2.1:-48820410 None:intergenic
TAGGAAATTTGAAGAATATT+TGG 0.147062 2.1:+48820416 MS.gene83618:CDS
CAAGATTTGCCTGTTGTTCT+TGG 0.174992 2.1:+48820625 MS.gene83618:CDS
AAATTCAGGTTATTCACTTA+TGG 0.234627 2.1:+48820447 MS.gene83618:CDS
ATTAGTGAAATTGAGAAAAT+TGG 0.245237 2.1:+48820535 MS.gene83618:CDS
ATTTGGATAGTTGGAAATTC+AGG 0.257969 2.1:+48820433 MS.gene83618:CDS
AATGCAAGATAATGCAGTTT+TGG 0.265766 2.1:+48820363 MS.gene83618:CDS
GTCAGATTCTTATGCTTATA+TGG 0.273058 2.1:-48820484 None:intergenic
TCCTTCATTGTTTCTTCATC+TGG 0.276668 2.1:-48820121 None:intergenic
TTGAAGAATATTTGGATAGT+TGG 0.287680 2.1:+48820424 MS.gene83618:CDS
TCAGCTATTGTATCTGGTTC+TGG 0.289548 2.1:+48819686 MS.gene83618:CDS
TTCTTCCATGTAATGATTCA+TGG 0.295521 2.1:-48819582 None:intergenic
GCTGCTTCAGCTATTGTATC+TGG 0.300058 2.1:+48819680 MS.gene83618:CDS
TGAAGATGGTGGTTGTTCTT+TGG 0.311168 2.1:+48820741 MS.gene83618:CDS
TTATATGAGAGGGCCAAATT+AGG 0.319401 2.1:+48820397 MS.gene83618:CDS
TTTACCTTAGGTGCAATTAT+AGG 0.323232 2.1:-48820214 None:intergenic
CAACAAGCACCAAGAACAAC+AGG 0.334974 2.1:-48820634 None:intergenic
AGGCTGGTTTCGAAGAAATT+CGG 0.335907 2.1:+48820013 MS.gene83618:CDS
ACCGCCACACGCTGGCGAAC+CGG 0.336332 2.1:-48819956 None:intergenic
TTGTTCTTTGGATTCTTTGA+AGG 0.339140 2.1:+48820753 MS.gene83618:CDS
GGCTGGTTTCGAAGAAATTC+GGG 0.358679 2.1:+48820014 MS.gene83618:CDS
TACATTACACCACCAACATT+TGG 0.366525 2.1:-48820178 None:intergenic
AAAATTGGTAAAGATGCTTT+TGG 0.369188 2.1:+48820550 MS.gene83618:CDS
AGGTTATTCACTTATGGATT+GGG 0.375307 2.1:+48820453 MS.gene83618:CDS
CAGGTTATTCACTTATGGAT+TGG 0.377146 2.1:+48820452 MS.gene83618:CDS
CATCATGGTCGGGCTGGTAC+TGG 0.387672 2.1:+48820805 MS.gene83618:CDS
GACGCTGCGTGACGCTATTC+CGG 0.388589 2.1:+48819937 MS.gene83618:CDS
GAAGAGTTTGAGGGTAGTTT+CGG 0.392799 2.1:+48820151 MS.gene83618:CDS
TCGCCACTGGCGAACCGCTT+AGG 0.411688 2.1:+48819993 MS.gene83618:CDS
TTGCAACCGTGAAGATTTCC+CGG 0.413793 2.1:+48819823 MS.gene83618:CDS
CAACTCTCCCACCAGTCTTT+AGG 0.414933 2.1:-48819803 None:intergenic
TGGTAGGTTGAAAGGTAGGT+GGG 0.415263 2.1:+48820570 MS.gene83618:CDS
TGAGATTATGAATGAAGAAA+TGG 0.419917 2.1:+48820675 MS.gene83618:CDS
ACCCACAGCCTACGTTGAAT+AGG 0.424840 2.1:-48819770 None:intergenic
AGCTATTCAGTAACTGTTCA+AGG 0.427841 2.1:+48820286 MS.gene83618:CDS
ATTTCCCGGATGATGAATTC+CGG 0.433406 2.1:+48819837 MS.gene83618:CDS
CACTGGCGAACCGCTTAGGC+TGG 0.434157 2.1:+48819997 MS.gene83618:CDS
TGGTCCAGACCAACGTGGTC+TGG 0.437477 2.1:+48819706 MS.gene83618:CDS
GCTCATTATTTGTTACATCA+TGG 0.448680 2.1:+48820790 MS.gene83618:CDS
GTTTCGAAGAAATTCGGGTT+AGG 0.455239 2.1:+48820019 MS.gene83618:CDS
TGGTCCAGACCACGTTGGTC+TGG 0.459547 2.1:-48819710 None:intergenic
TTGGTAGGTTGAAAGGTAGG+TGG 0.468359 2.1:+48820569 MS.gene83618:CDS
AGCCTATTCAACGTAGGCTG+TGG 0.468864 2.1:+48819768 MS.gene83618:CDS
ATTATTTGTTACATCATGGT+CGG 0.471012 2.1:+48820794 MS.gene83618:CDS
TTATTTGTTACATCATGGTC+GGG 0.477675 2.1:+48820795 MS.gene83618:CDS
CATCGCCGGAATTCATCATC+CGG 0.483016 2.1:-48819842 None:intergenic
GGAAACGAAAGAAGAGTTTG+AGG 0.485316 2.1:+48820141 MS.gene83618:CDS
TTCGGTATTCCAAATGTTGG+TGG 0.485519 2.1:+48820169 MS.gene83618:CDS
AATATCTTTCGAATCTGTAC+CGG 0.495460 2.1:-48819735 None:intergenic
TTACTGATGTGTGTATTGGT+TGG 0.498611 2.1:+48820332 MS.gene83618:CDS
TACAAACCAACATTTACCTT+AGG 0.499068 2.1:-48820226 None:intergenic
GATGTGTGTATTGGTTGGCC+TGG 0.500931 2.1:+48820337 MS.gene83618:CDS
CATCATCCGGGAAATCTTCA+CGG 0.507925 2.1:-48819829 None:intergenic
CAAGGTGTGGTAAATAGTAA+AGG 0.508102 2.1:+48820304 MS.gene83618:CDS
TGAAAGACCGGCCTAAAGAC+TGG 0.509719 2.1:+48819792 MS.gene83618:CDS
GGTAGGTTGAAAGGTAGGTG+GGG 0.512384 2.1:+48820571 MS.gene83618:CDS
GTAGGTTGAAAGGTAGGTGG+GGG 0.513890 2.1:+48820572 MS.gene83618:CDS
CTGCAACGAGCTGGATTCAT+CGG 0.515965 2.1:+48819898 MS.gene83618:CDS
GTAGGCTGTGGGTGAAAGAC+CGG 0.517962 2.1:+48819780 MS.gene83618:CDS
ATGAAGAAATGGATGATGAA+TGG 0.517962 2.1:+48820686 MS.gene83618:CDS
GAAACGAAAGAAGAGTTTGA+GGG 0.519667 2.1:+48820142 MS.gene83618:CDS
TGTTCCTATAATTGCACCTA+AGG 0.522840 2.1:+48820210 MS.gene83618:CDS
ATTGCACCTAAGGTAAATGT+TGG 0.524057 2.1:+48820220 MS.gene83618:CDS
TGTATATACCGCCTCGCCAC+TGG 0.524677 2.1:+48819980 MS.gene83618:CDS
CAACATGATCTGCAACGAGC+TGG 0.528812 2.1:+48819889 MS.gene83618:CDS
AGTTTCGGTATTCCAAATGT+TGG 0.530144 2.1:+48820166 MS.gene83618:CDS
TCGTTGTTGTTTGATGATGT+TGG 0.531698 2.1:-48819631 None:intergenic
TCCGGTTCGCCAGCGTGTGG+CGG 0.537854 2.1:+48819955 MS.gene83618:CDS
TAATGCAGAAGTTTCTTCGT+TGG 0.539378 2.1:+48820098 MS.gene83618:CDS
TTGTTACATCATGGTCGGGC+TGG 0.539867 2.1:+48820799 MS.gene83618:CDS
GGATGATGAATGGAAGTTTG+AGG 0.540969 2.1:+48820696 MS.gene83618:CDS
GCCTATTCAACGTAGGCTGT+GGG 0.545772 2.1:+48819769 MS.gene83618:CDS
ATATCTTTCGAATCTGTACC+GGG 0.545779 2.1:-48819734 None:intergenic
GCCTACGTTGAATAGGCTGC+TGG 0.548098 2.1:-48819763 None:intergenic
CTTTCGAATCTGTACCGGGC+TGG 0.548784 2.1:-48819730 None:intergenic
TAAGCGGTTCGCCAGTGGCG+AGG 0.549583 2.1:-48819991 None:intergenic
GCCAGATGAAGAAACAATGA+AGG 0.551617 2.1:+48820120 MS.gene83618:CDS
AATCTGACGTGGACACAACA+TGG 0.554899 2.1:+48820499 MS.gene83618:CDS
GCATTATCTTGCATTGAACC+AGG 0.558688 2.1:-48820355 None:intergenic
ATCGCCGGAATTCATCATCC+GGG 0.580423 2.1:-48819841 None:intergenic
CAGCCTAAGCGGTTCGCCAG+TGG 0.580669 2.1:-48819996 None:intergenic
TACTCATCCGAAAACATCGC+CGG 0.582531 2.1:-48819856 None:intergenic
TTCTTCGAAACCAGCCTAAG+CGG 0.591810 2.1:-48820007 None:intergenic
TTCAGTAACTGTTCAAGGTG+TGG 0.599865 2.1:+48820291 MS.gene83618:CDS
GATGAAATGATTGTTGAAGA+TGG 0.603950 2.1:+48820727 MS.gene83618:CDS
ACAAACCATGAATCATTACA+TGG 0.604340 2.1:+48819577 None:intergenic
GCGGTTCGCCAGTGGCGAGG+CGG 0.606304 2.1:-48819988 None:intergenic
CAACGTGGTCTGGACCAGCC+CGG 0.612903 2.1:+48819716 MS.gene83618:CDS
AGACCGGCCTAAAGACTGGT+GGG 0.625890 2.1:+48819796 MS.gene83618:CDS
TCTCCCACCAGTCTTTAGGC+CGG 0.626133 2.1:-48819799 None:intergenic
GTTGGTCTAACTGAGAGTAA+TGG 0.636217 2.1:-48819613 None:intergenic
TATTCCGGTTCGCCAGCGTG+TGG 0.639543 2.1:+48819952 MS.gene83618:CDS
ATCTGACGTGGACACAACAT+GGG 0.652309 2.1:+48820500 MS.gene83618:CDS
AAGACCGGCCTAAAGACTGG+TGG 0.667437 2.1:+48819795 MS.gene83618:CDS
TAACACAAGCTTATGACACG+TGG 0.669447 2.1:-48820047 None:intergenic
GAAATGATTGTTGAAGATGG+TGG 0.682776 2.1:+48820730 MS.gene83618:CDS
GGTTCTGGTCCAGACCAACG+TGG 0.734063 2.1:+48819701 MS.gene83618:CDS
CGGGCTGGTCCAGACCACGT+TGG 0.734063 2.1:-48819715 None:intergenic
ACCAGCAGCCTATTCAACGT+AGG 0.741133 2.1:+48819762 MS.gene83618:CDS
ATATACATACCGCCACACGC+TGG 0.742881 2.1:-48819964 None:intergenic
ATAAGCATAAGAATCTGACG+TGG 0.747957 2.1:+48820488 MS.gene83618:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAGTGAAATTGAGAAAAT+TGG + chr2.1:48820535-48820554 MS.gene83618:CDS 20.0%
!! ATTCTTCAAATTTCCTAATT+TGG - chr2.1:48820413-48820432 None:intergenic 20.0%
!! TAGGAAATTTGAAGAATATT+TGG + chr2.1:48820416-48820435 MS.gene83618:CDS 20.0%
! TGAGATTATGAATGAAGAAA+TGG + chr2.1:48820675-48820694 MS.gene83618:CDS 25.0%
! TTGAAGAATATTTGGATAGT+TGG + chr2.1:48820424-48820443 MS.gene83618:CDS 25.0%
!! AAAATTGGTAAAGATGCTTT+TGG + chr2.1:48820550-48820569 MS.gene83618:CDS 25.0%
!! AAATTCAGGTTATTCACTTA+TGG + chr2.1:48820447-48820466 MS.gene83618:CDS 25.0%
!! ATTATTTGTTACATCATGGT+CGG + chr2.1:48820794-48820813 MS.gene83618:CDS 25.0%
!!! AAAAAAGTGCTTTATATGAG+AGG + chr2.1:48820386-48820405 MS.gene83618:CDS 25.0%
!!! AAAAAGTGCTTTATATGAGA+GGG + chr2.1:48820387-48820406 MS.gene83618:CDS 25.0%
!!! TTACTGAATAGCTAGTTTTT+TGG - chr2.1:48820279-48820298 None:intergenic 25.0%
AATATCTTTCGAATCTGTAC+CGG - chr2.1:48819738-48819757 None:intergenic 30.0%
AGGTTATTCACTTATGGATT+GGG + chr2.1:48820453-48820472 MS.gene83618:CDS 30.0%
ATGAAGAAATGGATGATGAA+TGG + chr2.1:48820686-48820705 MS.gene83618:CDS 30.0%
ATTTGGATAGTTGGAAATTC+AGG + chr2.1:48820433-48820452 MS.gene83618:CDS 30.0%
GATGAAATGATTGTTGAAGA+TGG + chr2.1:48820727-48820746 MS.gene83618:CDS 30.0%
GTCAGATTCTTATGCTTATA+TGG - chr2.1:48820487-48820506 None:intergenic 30.0%
TACAAACCAACATTTACCTT+AGG - chr2.1:48820229-48820248 None:intergenic 30.0%
TTAACAAAAAACTCACTGAG+AGG + chr2.1:48820251-48820270 MS.gene83618:CDS 30.0%
TTGTTCTTTGGATTCTTTGA+AGG + chr2.1:48820753-48820772 MS.gene83618:CDS 30.0%
TTTACCTTAGGTGCAATTAT+AGG - chr2.1:48820217-48820236 None:intergenic 30.0%
! AATGCAAGATAATGCAGTTT+TGG + chr2.1:48820363-48820382 MS.gene83618:CDS 30.0%
! GCTCATTATTTGTTACATCA+TGG + chr2.1:48820790-48820809 MS.gene83618:CDS 30.0%
! GTTTTTACTGATGTGTGTAT+TGG + chr2.1:48820328-48820347 MS.gene83618:CDS 30.0%
! TTATTTGTTACATCATGGTC+GGG + chr2.1:48820795-48820814 MS.gene83618:CDS 30.0%
AGCTATTCAGTAACTGTTCA+AGG + chr2.1:48820286-48820305 MS.gene83618:CDS 35.0%
AGTTTCGGTATTCCAAATGT+TGG + chr2.1:48820166-48820185 MS.gene83618:CDS 35.0%
ATAAGCATAAGAATCTGACG+TGG + chr2.1:48820488-48820507 MS.gene83618:CDS 35.0%
ATATCTTTCGAATCTGTACC+GGG - chr2.1:48819737-48819756 None:intergenic 35.0%
ATTGCACCTAAGGTAAATGT+TGG + chr2.1:48820220-48820239 MS.gene83618:CDS 35.0%
CAAGGTGTGGTAAATAGTAA+AGG + chr2.1:48820304-48820323 MS.gene83618:CDS 35.0%
CAGGTTATTCACTTATGGAT+TGG + chr2.1:48820452-48820471 MS.gene83618:CDS 35.0%
GAAACGAAAGAAGAGTTTGA+GGG + chr2.1:48820142-48820161 MS.gene83618:CDS 35.0%
GAAATGATTGTTGAAGATGG+TGG + chr2.1:48820730-48820749 MS.gene83618:CDS 35.0%
TAATGCAGAAGTTTCTTCGT+TGG + chr2.1:48820098-48820117 MS.gene83618:CDS 35.0%
TACATTACACCACCAACATT+TGG - chr2.1:48820181-48820200 None:intergenic 35.0%
TGTTCCTATAATTGCACCTA+AGG + chr2.1:48820210-48820229 MS.gene83618:CDS 35.0%
TTATATGAGAGGGCCAAATT+AGG + chr2.1:48820397-48820416 MS.gene83618:CDS 35.0%
! TCCTTCATTGTTTCTTCATC+TGG - chr2.1:48820124-48820143 None:intergenic 35.0%
! TTACTGATGTGTGTATTGGT+TGG + chr2.1:48820332-48820351 MS.gene83618:CDS 35.0%
! TTGGTAAAGATGCTTTTGGT+AGG + chr2.1:48820554-48820573 MS.gene83618:CDS 35.0%
!! TCGTTGTTGTTTGATGATGT+TGG - chr2.1:48819634-48819653 None:intergenic 35.0%
ATTTCCCGGATGATGAATTC+CGG + chr2.1:48819837-48819856 MS.gene83618:CDS 40.0%
CAAGATTTGCCTGTTGTTCT+TGG + chr2.1:48820625-48820644 MS.gene83618:CDS 40.0%
GAAGAGTTTGAGGGTAGTTT+CGG + chr2.1:48820151-48820170 MS.gene83618:CDS 40.0%
GCATTATCTTGCATTGAACC+AGG - chr2.1:48820358-48820377 None:intergenic 40.0%
GCCAGATGAAGAAACAATGA+AGG + chr2.1:48820120-48820139 MS.gene83618:CDS 40.0%
GGAAACGAAAGAAGAGTTTG+AGG + chr2.1:48820141-48820160 MS.gene83618:CDS 40.0%
GGATGATGAATGGAAGTTTG+AGG + chr2.1:48820696-48820715 MS.gene83618:CDS 40.0%
TAACACAAGCTTATGACACG+TGG - chr2.1:48820050-48820069 None:intergenic 40.0%
TTCAGTAACTGTTCAAGGTG+TGG + chr2.1:48820291-48820310 MS.gene83618:CDS 40.0%
TTCGGTATTCCAAATGTTGG+TGG + chr2.1:48820169-48820188 MS.gene83618:CDS 40.0%
! ATGAATTCCGGCGATGTTTT+CGG + chr2.1:48819849-48819868 MS.gene83618:CDS 40.0%
! GTTGGTCTAACTGAGAGTAA+TGG - chr2.1:48819616-48819635 None:intergenic 40.0%
! GTTTCGAAGAAATTCGGGTT+AGG + chr2.1:48820019-48820038 MS.gene83618:CDS 40.0%
! TCAGCTATTGTATCTGGTTC+TGG + chr2.1:48819686-48819705 MS.gene83618:CDS 40.0%
! TGAAGATGGTGGTTGTTCTT+TGG + chr2.1:48820741-48820760 MS.gene83618:CDS 40.0%
!! AGGCTGGTTTCGAAGAAATT+CGG + chr2.1:48820013-48820032 MS.gene83618:CDS 40.0%
!! CTTTTGGTAGGTTGAAAGGT+AGG + chr2.1:48820566-48820585 MS.gene83618:CDS 40.0%
!! GATGCTTTTGGTAGGTTGAA+AGG + chr2.1:48820562-48820581 MS.gene83618:CDS 40.0%
AATCTGACGTGGACACAACA+TGG + chr2.1:48820499-48820518 MS.gene83618:CDS 45.0%
ATCTGACGTGGACACAACAT+GGG + chr2.1:48820500-48820519 MS.gene83618:CDS 45.0%
CAACAAGCACCAAGAACAAC+AGG - chr2.1:48820637-48820656 None:intergenic 45.0%
CATCATCCGGGAAATCTTCA+CGG - chr2.1:48819832-48819851 None:intergenic 45.0%
GCTGCTTCAGCTATTGTATC+TGG + chr2.1:48819680-48819699 MS.gene83618:CDS 45.0%
TACTCATCCGAAAACATCGC+CGG - chr2.1:48819859-48819878 None:intergenic 45.0%
TTCTTCGAAACCAGCCTAAG+CGG - chr2.1:48820010-48820029 None:intergenic 45.0%
TTGCAACCGTGAAGATTTCC+CGG + chr2.1:48819823-48819842 MS.gene83618:CDS 45.0%
! TGGTAGGTTGAAAGGTAGGT+GGG + chr2.1:48820570-48820589 MS.gene83618:CDS 45.0%
! TTGGTAGGTTGAAAGGTAGG+TGG + chr2.1:48820569-48820588 MS.gene83618:CDS 45.0%
!! GGCTGGTTTCGAAGAAATTC+GGG + chr2.1:48820014-48820033 MS.gene83618:CDS 45.0%
ACCAGCAGCCTATTCAACGT+AGG + chr2.1:48819762-48819781 MS.gene83618:CDS 50.0%
ACCCACAGCCTACGTTGAAT+AGG - chr2.1:48819773-48819792 None:intergenic 50.0%
AGCCTATTCAACGTAGGCTG+TGG + chr2.1:48819768-48819787 MS.gene83618:CDS 50.0%
ATATACATACCGCCACACGC+TGG - chr2.1:48819967-48819986 None:intergenic 50.0%
ATCGCCGGAATTCATCATCC+GGG - chr2.1:48819844-48819863 None:intergenic 50.0%
CAACATGATCTGCAACGAGC+TGG + chr2.1:48819889-48819908 MS.gene83618:CDS 50.0%
CAACTCTCCCACCAGTCTTT+AGG - chr2.1:48819806-48819825 None:intergenic 50.0%
CATCGCCGGAATTCATCATC+CGG - chr2.1:48819845-48819864 None:intergenic 50.0%
CTGCAACGAGCTGGATTCAT+CGG + chr2.1:48819898-48819917 MS.gene83618:CDS 50.0%
GCCTATTCAACGTAGGCTGT+GGG + chr2.1:48819769-48819788 MS.gene83618:CDS 50.0%
TGAAAGACCGGCCTAAAGAC+TGG + chr2.1:48819792-48819811 MS.gene83618:CDS 50.0%
TTGTTACATCATGGTCGGGC+TGG + chr2.1:48820799-48820818 MS.gene83618:CDS 50.0%
! GGTAGGTTGAAAGGTAGGTG+GGG + chr2.1:48820571-48820590 MS.gene83618:CDS 50.0%
! GTAGGTTGAAAGGTAGGTGG+GGG + chr2.1:48820572-48820591 MS.gene83618:CDS 50.0%
!! GATGTGTGTATTGGTTGGCC+TGG + chr2.1:48820337-48820356 MS.gene83618:CDS 50.0%
!! GGTGGGGGTGTTTGAAGAAA+AGG + chr2.1:48820587-48820606 MS.gene83618:CDS 50.0%
AAGACCGGCCTAAAGACTGG+TGG + chr2.1:48819795-48819814 MS.gene83618:CDS 55.0%
AGACCGGCCTAAAGACTGGT+GGG + chr2.1:48819796-48819815 MS.gene83618:CDS 55.0%
CTTTCGAATCTGTACCGGGC+TGG - chr2.1:48819733-48819752 None:intergenic 55.0%
GCCTACGTTGAATAGGCTGC+TGG - chr2.1:48819766-48819785 None:intergenic 55.0%
GTAGGCTGTGGGTGAAAGAC+CGG + chr2.1:48819780-48819799 MS.gene83618:CDS 55.0%
TCTCCCACCAGTCTTTAGGC+CGG - chr2.1:48819802-48819821 None:intergenic 55.0%
TGTATATACCGCCTCGCCAC+TGG + chr2.1:48819980-48819999 MS.gene83618:CDS 55.0%
GACGCTGCGTGACGCTATTC+CGG + chr2.1:48819937-48819956 MS.gene83618:CDS 60.0%
TGGTCCAGACCAACGTGGTC+TGG + chr2.1:48819706-48819725 MS.gene83618:CDS 60.0%
TGGTCCAGACCACGTTGGTC+TGG - chr2.1:48819713-48819732 None:intergenic 60.0%
! GGTTCTGGTCCAGACCAACG+TGG + chr2.1:48819701-48819720 MS.gene83618:CDS 60.0%
! TATTCCGGTTCGCCAGCGTG+TGG + chr2.1:48819952-48819971 MS.gene83618:CDS 60.0%
!! CATCATGGTCGGGCTGGTAC+TGG + chr2.1:48820805-48820824 MS.gene83618:CDS 60.0%
CAACGTGGTCTGGACCAGCC+CGG + chr2.1:48819716-48819735 MS.gene83618:CDS 65.0%
CACTGGCGAACCGCTTAGGC+TGG + chr2.1:48819997-48820016 MS.gene83618:CDS 65.0%
CAGCCTAAGCGGTTCGCCAG+TGG - chr2.1:48819999-48820018 None:intergenic 65.0%
TAAGCGGTTCGCCAGTGGCG+AGG - chr2.1:48819994-48820013 None:intergenic 65.0%
TCGCCACTGGCGAACCGCTT+AGG + chr2.1:48819993-48820012 MS.gene83618:CDS 65.0%
ACCGCCACACGCTGGCGAAC+CGG - chr2.1:48819959-48819978 None:intergenic 70.0%
! TCCGGTTCGCCAGCGTGTGG+CGG + chr2.1:48819955-48819974 MS.gene83618:CDS 70.0%
!! CGGGCTGGTCCAGACCACGT+TGG - chr2.1:48819718-48819737 None:intergenic 70.0%
GCGGTTCGCCAGTGGCGAGG+CGG - chr2.1:48819991-48820010 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 48819584 48820837 48819584 ID=MS.gene83618
chr2.1 mRNA 48819584 48820837 48819584 ID=MS.gene83618.t1;Parent=MS.gene83618
chr2.1 exon 48819584 48820837 48819584 ID=MS.gene83618.t1.exon1;Parent=MS.gene83618.t1
chr2.1 CDS 48819584 48820837 48819584 ID=cds.MS.gene83618.t1;Parent=MS.gene83618.t1
Gene Sequence

>MS.gene83618

ATGAATCATTACATGGAAGAACTTCAAAACCATTACTCTCAGTTAGACCAACATCATCAAACAACAACGAAAAAAGCTCGTATGTCTGCTATTACAGCTGCTTCAGCTATTGTATCTGGTTCTGGTCCAGACCAACGTGGTCTGGACCAGCCCGGTACAGATTCGAAAGATATTATCAACCAGCAGCCTATTCAACGTAGGCTGTGGGTGAAAGACCGGCCTAAAGACTGGTGGGAGAGTTGCAACCGTGAAGATTTCCCGGATGATGAATTCCGGCGATGTTTTCGGATGAGTAAAAAAACATTCAACATGATCTGCAACGAGCTGGATTCATCGGTGACGAAGAAAAACACGACGCTGCGTGACGCTATTCCGGTTCGCCAGCGTGTGGCGGTATGTATATACCGCCTCGCCACTGGCGAACCGCTTAGGCTGGTTTCGAAGAAATTCGGGTTAGGAATATCCACGTGTCATAAGCTTGTGTTAGAAGTTTGTGCAGCTATTAAAACAGTTTTAATGCAGAAGTTTCTTCGTTGGCCAGATGAAGAAACAATGAAGGAAACGAAAGAAGAGTTTGAGGGTAGTTTCGGTATTCCAAATGTTGGTGGTGTAATGTATACTACTCATGTTCCTATAATTGCACCTAAGGTAAATGTTGGTTTGTATTTTAACAAAAAACTCACTGAGAGGAACCAAAAAACTAGCTATTCAGTAACTGTTCAAGGTGTGGTAAATAGTAAAGGTGTTTTTACTGATGTGTGTATTGGTTGGCCTGGTTCAATGCAAGATAATGCAGTTTTGGAAAAAAGTGCTTTATATGAGAGGGCCAAATTAGGAAATTTGAAGAATATTTGGATAGTTGGAAATTCAGGTTATTCACTTATGGATTGGGTTTTAGTGCCATATAAGCATAAGAATCTGACGTGGACACAACATGGGTTTAACGAGAGAATTAGTGAAATTGAGAAAATTGGTAAAGATGCTTTTGGTAGGTTGAAAGGTAGGTGGGGGTGTTTGAAGAAAAGGACTGAAATTAAGTTGCAAGATTTGCCTGTTGTTCTTGGTGCTTGTTGTGTGCTTCATAATATTTGTGAGATTATGAATGAAGAAATGGATGATGAATGGAAGTTTGAGGTTTTTGATGATGAAATGATTGTTGAAGATGGTGGTTGTTCTTTGGATTCTTTGAAGGCTAGAGATCAAATTGCTCATTATTTGTTACATCATGGTCGGGCTGGTACTGGATTTTTGTAG
Protein sequence

>MS.gene83618.t1

MNHYMEELQNHYSQLDQHHQTTTKKARMSAITAASAIVSGSGPDQRGLDQPGTDSKDIINQQPIQRRLWVKDRPKDWWESCNREDFPDDEFRRCFRMSKKTFNMICNELDSSVTKKNTTLRDAIPVRQRVAVCIYRLATGEPLRLVSKKFGLGISTCHKLVLEVCAAIKTVLMQKFLRWPDEETMKETKEEFEGSFGIPNVGGVMYTTHVPIIAPKVNVGLYFNKKLTERNQKTSYSVTVQGVVNSKGVFTDVCIGWPGSMQDNAVLEKSALYERAKLGNLKNIWIVGNSGYSLMDWVLVPYKHKNLTWTQHGFNERISEIEKIGKDAFGRLKGRWGCLKKRTEIKLQDLPVVLGACCVLHNICEIMNEEMDDEWKFEVFDDEMIVEDGGCSLDSLKARDQIAHYLLHHGRAGTGFL