Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86711.t1 | RHN74686.1 | 89.9 | 505 | 51 | 0 | 1 | 505 | 1 | 505 | 1.60E-263 | 918.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86711.t1 | Q9SAG4 | 24.5 | 461 | 282 | 14 | 12 | 456 | 44 | 454 | 2.0e-17 | 92.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86711.t1 | A0A396J8U4 | 89.9 | 505 | 51 | 0 | 1 | 505 | 1 | 505 | 1.1e-263 | 918.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene86711 | MS.gene072003 | PPI |
| MS.gene86711 | MS.gene045772 | PPI |
| MS.gene86711 | MS.gene065373 | PPI |
| MS.gene86711 | MS.gene51795 | PPI |
| MS.gene047137 | MS.gene86711 | PPI |
| MS.gene86711 | MS.gene002112 | PPI |
| MS.gene86711 | MS.gene047136 | PPI |
| MS.gene86711 | MS.gene072000 | PPI |
| MS.gene86711 | MS.gene033695 | PPI |
| MS.gene86711 | MS.gene54959 | PPI |
| MS.gene86711 | MS.gene071257 | PPI |
| MS.gene86711 | MS.gene78164 | PPI |
| MS.gene86711 | MS.gene024262 | PPI |
| MS.gene86711 | MS.gene51793 | PPI |
| MS.gene86711 | MS.gene033694 | PPI |
| MS.gene86711 | MS.gene01653 | PPI |
| MS.gene86711 | MS.gene54960 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86711.t1 | MTR_2g071700 | 89.941 | 338 | 34 | 0 | 1 | 338 | 1 | 338 | 0.0 | 593 |
| MS.gene86711.t1 | MTR_6g034190 | 56.046 | 521 | 201 | 6 | 1 | 506 | 1 | 508 | 0.0 | 563 |
| MS.gene86711.t1 | MTR_2g070780 | 70.710 | 338 | 95 | 2 | 1 | 338 | 1 | 334 | 6.60e-164 | 468 |
| MS.gene86711.t1 | MTR_2g072240 | 48.889 | 495 | 196 | 5 | 14 | 506 | 6 | 445 | 4.62e-158 | 457 |
| MS.gene86711.t1 | MTR_2g071720 | 81.921 | 177 | 16 | 1 | 345 | 505 | 1 | 177 | 4.10e-101 | 301 |
| MS.gene86711.t1 | MTR_2g070660 | 70.558 | 197 | 28 | 1 | 1 | 197 | 1 | 167 | 5.74e-91 | 275 |
| MS.gene86711.t1 | MTR_2g070820 | 74.775 | 111 | 28 | 0 | 279 | 389 | 1 | 111 | 1.38e-51 | 171 |
| MS.gene86711.t1 | MTR_3g448340 | 24.319 | 477 | 273 | 16 | 15 | 456 | 3 | 426 | 1.85e-15 | 79.0 |
| MS.gene86711.t1 | MTR_2g047858 | 22.907 | 454 | 277 | 15 | 14 | 456 | 111 | 502 | 7.77e-14 | 74.3 |
| MS.gene86711.t1 | MTR_1g014450 | 21.663 | 457 | 272 | 16 | 16 | 456 | 14 | 400 | 1.58e-13 | 72.8 |
| MS.gene86711.t1 | MTR_2g047872 | 21.806 | 454 | 288 | 16 | 10 | 456 | 14 | 407 | 5.62e-13 | 71.2 |
| MS.gene86711.t1 | MTR_1g016310 | 23.973 | 292 | 174 | 9 | 1 | 286 | 3 | 252 | 5.39e-11 | 65.1 |
| MS.gene86711.t1 | MTR_1g016310 | 22.945 | 292 | 177 | 6 | 1 | 286 | 3 | 252 | 9.34e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86711.t1 | AT1G80960 | 24.411 | 467 | 273 | 14 | 13 | 456 | 6 | 415 | 3.04e-18 | 87.8 |
| MS.gene86711.t1 | AT1G80960 | 24.359 | 468 | 274 | 14 | 12 | 456 | 44 | 454 | 3.74e-18 | 87.4 |
| MS.gene86711.t1 | AT1G80960 | 24.359 | 468 | 274 | 14 | 12 | 456 | 44 | 454 | 3.74e-18 | 87.4 |
| MS.gene86711.t1 | AT1G80960 | 24.359 | 468 | 274 | 14 | 12 | 456 | 44 | 454 | 3.74e-18 | 87.4 |
| MS.gene86711.t1 | AT1G80960 | 27.215 | 316 | 172 | 9 | 12 | 314 | 44 | 314 | 1.01e-17 | 85.5 |
| MS.gene86711.t1 | AT1G80960 | 27.215 | 316 | 172 | 9 | 12 | 314 | 44 | 314 | 1.19e-17 | 85.9 |
| MS.gene86711.t1 | AT1G67390 | 27.431 | 288 | 169 | 8 | 18 | 301 | 41 | 292 | 9.43e-16 | 80.1 |
| MS.gene86711.t1 | AT3G60790 | 25.312 | 320 | 187 | 12 | 2 | 314 | 38 | 312 | 3.96e-12 | 68.9 |
| MS.gene86711.t1 | AT2G42730 | 27.668 | 253 | 139 | 8 | 18 | 264 | 5 | 219 | 9.65e-12 | 67.4 |
| MS.gene86711.t1 | AT5G62970 | 23.744 | 438 | 268 | 18 | 18 | 434 | 2 | 394 | 5.62e-11 | 65.1 |
Find 89 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGAATGTGCTCAGGATTT+TGG | 0.185156 | 2.3:-24797878 | MS.gene86711:CDS |
| CTTACCCTGGTGGTTTGTTT+TGG | 0.236904 | 2.3:-24796617 | MS.gene86711:CDS |
| GTTAAGTACTTAATATTAAA+TGG | 0.248591 | 2.3:-24796504 | MS.gene86711:CDS |
| TTCAAATCAATTGACAATTT+AGG | 0.254356 | 2.3:+24796384 | None:intergenic |
| CAACTCAAGAACCTTAAAAT+TGG | 0.260477 | 2.3:+24798113 | None:intergenic |
| CCAAGCGATGGGAGTCATTA+TGG | 0.279125 | 2.3:-24798783 | MS.gene86711:CDS |
| CTAAAGTCTGTTTGTATAAA+GGG | 0.291958 | 2.3:-24796558 | MS.gene86711:CDS |
| GCACGAAGAACTTGAAGTTT+TGG | 0.293746 | 2.3:+24797781 | None:intergenic |
| CGGATATTGTGGGGTGGTTA+AGG | 0.294599 | 2.3:-24798266 | MS.gene86711:CDS |
| AAGACTTCAACATTTGTCTT+TGG | 0.296399 | 2.3:+24798734 | None:intergenic |
| TTTAAAGTCTGCTGGGAATC+AGG | 0.299645 | 2.3:+24798060 | None:intergenic |
| CCTAAAGTCTGTTTGTATAA+AGG | 0.317402 | 2.3:-24796559 | MS.gene86711:CDS |
| ATCTTCATGACTACAAATAA+TGG | 0.327696 | 2.3:+24797819 | None:intergenic |
| CCTTTATACAAACAGACTTT+AGG | 0.331850 | 2.3:+24796559 | None:intergenic |
| TTAAGGAAAATACTGGAAAA+AGG | 0.338514 | 2.3:-24798249 | MS.gene86711:CDS |
| TCAAAATACTCCTCATTTGT+AGG | 0.358011 | 2.3:+24798393 | None:intergenic |
| TCTTAGGGTCATCGAGGTTC+AGG | 0.358731 | 2.3:-24797064 | MS.gene86711:intron |
| GACAATTTAGGAGAGAGTTT+TGG | 0.359150 | 2.3:+24796396 | None:intergenic |
| TATTTGTAGTCATGAAGATT+TGG | 0.359911 | 2.3:-24797815 | MS.gene86711:CDS |
| TTTGTCTTTGGTCAAAACTA+AGG | 0.395796 | 2.3:+24798746 | None:intergenic |
| CATTTATTTACTTCCATACA+TGG | 0.408214 | 2.3:-24798830 | MS.gene86711:CDS |
| TCATGAAGATTTGGTCTTTG+AGG | 0.413287 | 2.3:-24797806 | MS.gene86711:CDS |
| TCAAATATTGACAATCATAT+TGG | 0.420752 | 2.3:-24798339 | MS.gene86711:CDS |
| ACCGAGTCTATACAGAAGTA+TGG | 0.427830 | 2.3:-24796354 | MS.gene86711:CDS |
| TTATGAATAATATTACCATT+TGG | 0.432439 | 2.3:-24796476 | MS.gene86711:CDS |
| GTTCTCACAACTTCCATGTA+TGG | 0.439142 | 2.3:+24798817 | None:intergenic |
| TCGGATGGTACAACTCTTCA+AGG | 0.444461 | 2.3:+24798314 | None:intergenic |
| GTTTGTATAAAGGGATATAA+AGG | 0.451854 | 2.3:-24796549 | MS.gene86711:CDS |
| TCTTAAACTCTAGGTCAAGT+TGG | 0.476404 | 2.3:-24796673 | MS.gene86711:intron |
| TTGTCAATTGATTTGAAACA+TGG | 0.480319 | 2.3:-24796378 | MS.gene86711:CDS |
| TTTGAAGATTCATTAGTTGT+GGG | 0.487958 | 2.3:+24796942 | None:intergenic |
| TCCGCACTTGCACAACTCTC+AGG | 0.492078 | 2.3:+24798285 | None:intergenic |
| GATAGAACCTAAAAGTTCAT+CGG | 0.492455 | 2.3:+24798852 | None:intergenic |
| ATAGAACCTAAAAGTTCATC+GGG | 0.493156 | 2.3:+24798853 | None:intergenic |
| ATTTGAAGATTCATTAGTTG+TGG | 0.494505 | 2.3:+24796941 | None:intergenic |
| CAAAACAAACCACCAGGGTA+AGG | 0.497256 | 2.3:+24796618 | None:intergenic |
| CTTTGGTCAAAACTAAGGTC+AGG | 0.499026 | 2.3:+24798751 | None:intergenic |
| TTTGTAATATGAATGTGCTC+AGG | 0.508079 | 2.3:-24797885 | MS.gene86711:CDS |
| TTAAAGTCTGCTGGGAATCA+GGG | 0.509876 | 2.3:+24798061 | None:intergenic |
| TTGTGCAAGTGCGGATATTG+TGG | 0.521452 | 2.3:-24798277 | MS.gene86711:CDS |
| AATCACAATTCTCGACGGTA+AGG | 0.523805 | 2.3:+24797959 | None:intergenic |
| TGTGCAAGTGCGGATATTGT+GGG | 0.527611 | 2.3:-24798276 | MS.gene86711:CDS |
| CAAGTGTGCTTTCCAAGCGA+TGG | 0.528071 | 2.3:-24798795 | MS.gene86711:CDS |
| AACCTCAAAAGGTAAATCAA+TGG | 0.528655 | 2.3:+24798140 | None:intergenic |
| CCATAATGACTCCCATCGCT+TGG | 0.530097 | 2.3:+24798783 | None:intergenic |
| TGGTGGCAGCTTTGATGAAT+GGG | 0.531188 | 2.3:-24796334 | MS.gene86711:intron |
| AAATTGGAGAAAACCTCAAA+AGG | 0.535849 | 2.3:+24798129 | None:intergenic |
| ATGGTGGCAGCTTTGATGAA+TGG | 0.540826 | 2.3:-24796335 | MS.gene86711:CDS |
| GGCTCAAAAGGGACCCCTGT+AGG | 0.543884 | 2.3:-24796596 | MS.gene86711:CDS |
| GCTACGGCTAACACACCTAC+AGG | 0.546526 | 2.3:+24796581 | None:intergenic |
| TACAAACAGACTTTAGGCTA+CGG | 0.550195 | 2.3:+24796565 | None:intergenic |
| GATAGTCTTCCTTACCCTGG+TGG | 0.551228 | 2.3:-24796627 | MS.gene86711:CDS |
| TGTCAATTGATTTGAAACAT+GGG | 0.552653 | 2.3:-24796377 | MS.gene86711:CDS |
| GGTCATCGAGGTTCAGGCAT+GGG | 0.558503 | 2.3:-24797058 | MS.gene86711:CDS |
| CACAACTCTCAGGCAAGTGT+CGG | 0.563469 | 2.3:+24798295 | None:intergenic |
| GGGGTGGTTAAGGAAAATAC+TGG | 0.572493 | 2.3:-24798256 | MS.gene86711:CDS |
| TACTGTTCAATTCAAAGTTG+AGG | 0.576864 | 2.3:+24797005 | None:intergenic |
| AAGTGTGCTTTCCAAGCGAT+GGG | 0.578750 | 2.3:-24798794 | MS.gene86711:CDS |
| TAACGAAGGAATATTAGACT+TGG | 0.583947 | 2.3:-24798184 | MS.gene86711:CDS |
| TTGAGCCAAAACAAACCACC+AGG | 0.586250 | 2.3:+24796612 | None:intergenic |
| GAGTGCAAAAGAAAGAGCTA+TGG | 0.595456 | 2.3:+24796973 | None:intergenic |
| AGTCTGCTGGGAATCAGGGG+AGG | 0.596089 | 2.3:+24798065 | None:intergenic |
| TGTATAAAGGGATATAAAGG+TGG | 0.601016 | 2.3:-24796546 | MS.gene86711:CDS |
| TCTTGTGATTATCTTAACGA+AGG | 0.601820 | 2.3:-24798198 | MS.gene86711:CDS |
| GAATCTTCAAATAAATAACC+AGG | 0.602091 | 2.3:-24796930 | MS.gene86711:intron |
| GTCTGCTGGGAATCAGGGGA+GGG | 0.602271 | 2.3:+24798066 | None:intergenic |
| TAAAGTCTGCTGGGAATCAG+GGG | 0.602508 | 2.3:+24798062 | None:intergenic |
| AATATTTGATGTAATCATCA+TGG | 0.606995 | 2.3:+24798353 | None:intergenic |
| ATTGTAAGACGGTCATCAAG+TGG | 0.611036 | 2.3:+24798685 | None:intergenic |
| ACAGGTAGCTCCTACAAATG+AGG | 0.611347 | 2.3:-24798403 | MS.gene86711:intron |
| TACAATGGCTATGCAACGCA+AGG | 0.612851 | 2.3:-24798668 | MS.gene86711:intron |
| ACCATACTTCTGTATAGACT+CGG | 0.615500 | 2.3:+24796353 | None:intergenic |
| CTACGGCTAACACACCTACA+GGG | 0.616738 | 2.3:+24796582 | None:intergenic |
| GGGTCATCGAGGTTCAGGCA+TGG | 0.625995 | 2.3:-24797059 | MS.gene86711:CDS |
| GTTGCATAGCCATTGTAAGA+CGG | 0.627198 | 2.3:+24798674 | None:intergenic |
| TAACACGAAGGAATGAGTGA+AGG | 0.630821 | 2.3:-24798934 | None:intergenic |
| CGGATGGTACAACTCTTCAA+GGG | 0.643395 | 2.3:+24798315 | None:intergenic |
| GCCTGAGAGTTGTGCAAGTG+CGG | 0.646523 | 2.3:-24798286 | MS.gene86711:CDS |
| ACTTGATGACCGTCTTACAA+TGG | 0.648825 | 2.3:-24798683 | MS.gene86711:CDS |
| ACTCTCAGGCAAGTGTCGGA+TGG | 0.653394 | 2.3:+24798299 | None:intergenic |
| TAAGAAATCACAATTCTCGA+CGG | 0.656792 | 2.3:+24797954 | None:intergenic |
| AATGATAGTCTTCCTTACCC+TGG | 0.661903 | 2.3:-24796630 | MS.gene86711:CDS |
| AAGTACTTAATATTAAATGG+CGG | 0.681402 | 2.3:-24796501 | MS.gene86711:CDS |
| TGATTGTCTTAGGGTCATCG+AGG | 0.687412 | 2.3:-24797070 | MS.gene86711:intron |
| GAGTCTATACAGAAGTATGG+TGG | 0.708284 | 2.3:-24796351 | MS.gene86711:CDS |
| GTGCAAGTGCGGATATTGTG+GGG | 0.710817 | 2.3:-24798275 | MS.gene86711:CDS |
| TACGGCTAACACACCTACAG+GGG | 0.715804 | 2.3:+24796583 | None:intergenic |
| CAAGTGCGGATATTGTGGGG+TGG | 0.717451 | 2.3:-24798272 | MS.gene86711:CDS |
| TGAGCCAAAACAAACCACCA+GGG | 0.739963 | 2.3:+24796613 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATAATTAGATTATTCAAA+TGG | - | chr2.3:24796244-24796263 | MS.gene86711:intron | 15.0% |
| !! | GTTAAGTACTTAATATTAAA+TGG | - | chr2.3:24798309-24798328 | MS.gene86711:CDS | 15.0% |
| !! | TCATATTGTAGTATATATAA+AGG | - | chr2.3:24798765-24798784 | MS.gene86711:CDS | 15.0% |
| !! | TTATGAATAATATTACCATT+TGG | - | chr2.3:24798337-24798356 | MS.gene86711:CDS | 15.0% |
| !!! | AGAGATATTATAGAAATTTT+CGG | - | chr2.3:24797119-24797138 | MS.gene86711:intron | 15.0% |
| !!! | ATTTTAATATATTTCAGACT+TGG | + | chr2.3:24796909-24796928 | None:intergenic | 15.0% |
| !!! | CAATTATTCAAGTTTTAAAA+TGG | - | chr2.3:24797966-24797985 | MS.gene86711:CDS | 15.0% |
| !! | AAGTACTTAATATTAAATGG+CGG | - | chr2.3:24798312-24798331 | MS.gene86711:CDS | 20.0% |
| !! | AATATTTGATGTAATCATCA+TGG | + | chr2.3:24796463-24796482 | None:intergenic | 20.0% |
| !! | ATATCATAGCTTATTATATG+TGG | - | chr2.3:24797459-24797478 | MS.gene86711:intron | 20.0% |
| !! | CATTCATTTCATTTAGAAAA+TGG | + | chr2.3:24796334-24796353 | None:intergenic | 20.0% |
| !! | TATATGTACAACTTAACATA+TGG | - | chr2.3:24797281-24797300 | MS.gene86711:intron | 20.0% |
| !! | TCAAATATTGACAATCATAT+TGG | - | chr2.3:24796474-24796493 | MS.gene86711:CDS | 20.0% |
| !! | TGAGATATGATATATATTGA+CGG | - | chr2.3:24796375-24796394 | MS.gene86711:CDS | 20.0% |
| !! | TTCAAATCAATTGACAATTT+AGG | + | chr2.3:24798432-24798451 | None:intergenic | 20.0% |
| !!! | ATAAGCTATGATATTTTTCT+AGG | + | chr2.3:24797453-24797472 | None:intergenic | 20.0% |
| !!! | CAAAAATTTAGAACATTAGA+TGG | + | chr2.3:24797246-24797265 | None:intergenic | 20.0% |
| !!! | GGAGAAATTTTATTTATTGA+TGG | - | chr2.3:24797077-24797096 | MS.gene86711:intron | 20.0% |
| !!! | TAATATTACCATTTGGTTTT+TGG | - | chr2.3:24798344-24798363 | MS.gene86711:CDS | 20.0% |
| !!! | TACAATGATTTTCAAATTCT+TGG | - | chr2.3:24797056-24797075 | MS.gene86711:CDS | 20.0% |
| !!! | TTTTAGATGACATTTTTCTA+AGG | + | chr2.3:24797612-24797631 | None:intergenic | 20.0% |
| ! | AAGTCTAATAACAATTTGAG+AGG | + | chr2.3:24798569-24798588 | None:intergenic | 25.0% |
| ! | AATAAATAACCAGGTATGTT+TGG | - | chr2.3:24797892-24797911 | MS.gene86711:CDS | 25.0% |
| ! | AGAAAGATAGTTACAAAACA+AGG | + | chr2.3:24797723-24797742 | None:intergenic | 25.0% |
| ! | ATAAATAACCAGGTATGTTT+GGG | - | chr2.3:24797893-24797912 | MS.gene86711:CDS | 25.0% |
| ! | ATCTTCATGACTACAAATAA+TGG | + | chr2.3:24796997-24797016 | None:intergenic | 25.0% |
| ! | ATTTGAAGATTCATTAGTTG+TGG | + | chr2.3:24797875-24797894 | None:intergenic | 25.0% |
| ! | CATTTATTTACTTCCATACA+TGG | - | chr2.3:24795983-24796002 | MS.gene86711:intron | 25.0% |
| ! | CATTTCATTTAGAAAATGGA+AGG | + | chr2.3:24796330-24796349 | None:intergenic | 25.0% |
| ! | CTAAAGTCTGTTTGTATAAA+GGG | - | chr2.3:24798255-24798274 | MS.gene86711:CDS | 25.0% |
| ! | GAAAGATAGTTACAAAACAA+GGG | + | chr2.3:24797722-24797741 | None:intergenic | 25.0% |
| ! | GAATCTTCAAATAAATAACC+AGG | - | chr2.3:24797883-24797902 | MS.gene86711:CDS | 25.0% |
| ! | GTTTGTATAAAGGGATATAA+AGG | - | chr2.3:24798264-24798283 | MS.gene86711:CDS | 25.0% |
| ! | TAAAGATAGTTGCAAACATA+TGG | + | chr2.3:24797929-24797948 | None:intergenic | 25.0% |
| ! | TAAGGAAAATACTGGAAAAA+GGG | - | chr2.3:24796565-24796584 | MS.gene86711:CDS | 25.0% |
| ! | TATCTTTCTTGATTGTCTTA+GGG | - | chr2.3:24797734-24797753 | MS.gene86711:CDS | 25.0% |
| ! | TATTTGTAGTCATGAAGATT+TGG | - | chr2.3:24796998-24797017 | MS.gene86711:CDS | 25.0% |
| ! | TTAAGGAAAATACTGGAAAA+AGG | - | chr2.3:24796564-24796583 | MS.gene86711:CDS | 25.0% |
| ! | TTTGAAGATTCATTAGTTGT+GGG | + | chr2.3:24797874-24797893 | None:intergenic | 25.0% |
| !! | ATTGATTTATCGTTACATCA+TGG | + | chr2.3:24798074-24798093 | None:intergenic | 25.0% |
| !! | CATCTGATAATTTTCTATCT+AGG | - | chr2.3:24798630-24798649 | MS.gene86711:intron | 25.0% |
| !! | GATATTATAGAAATTTTCGG+TGG | - | chr2.3:24797122-24797141 | MS.gene86711:intron | 25.0% |
| !! | TTAAGTTGTACATATATCCA+AGG | + | chr2.3:24797277-24797296 | None:intergenic | 25.0% |
| !!! | ATGCTGAAAATTGTTGTTTA+TGG | - | chr2.3:24797505-24797524 | MS.gene86711:intron | 25.0% |
| !!! | CATTTGATAGTTTTGTATCT+TGG | - | chr2.3:24798658-24798677 | MS.gene86711:intron | 25.0% |
| !!! | GAAGTGTTTTTGTTAATCTT+GGG | - | chr2.3:24798537-24798556 | MS.gene86711:intron | 25.0% |
| !!! | TCATCAACCACTTTATTTTA+GGG | + | chr2.3:24798511-24798530 | None:intergenic | 25.0% |
| !!! | TGAAGTGTTTTTGTTAATCT+TGG | - | chr2.3:24798536-24798555 | MS.gene86711:intron | 25.0% |
| !!! | TGTCAATTGATTTGAAACAT+GGG | - | chr2.3:24798436-24798455 | MS.gene86711:intron | 25.0% |
| !!! | TGTGTGTGTTTTGTTTTTAA+CGG | + | chr2.3:24798852-24798871 | None:intergenic | 25.0% |
| !!! | TTCATCAACCACTTTATTTT+AGG | + | chr2.3:24798512-24798531 | None:intergenic | 25.0% |
| !!! | TTGTCAATTGATTTGAAACA+TGG | - | chr2.3:24798435-24798454 | MS.gene86711:intron | 25.0% |
| AAATTAATCCCAAACATACC+TGG | + | chr2.3:24797904-24797923 | None:intergenic | 30.0% | |
| AAATTGGAGAAAACCTCAAA+AGG | + | chr2.3:24796687-24796706 | None:intergenic | 30.0% | |
| AACCTCAAAAGGTAAATCAA+TGG | + | chr2.3:24796676-24796695 | None:intergenic | 30.0% | |
| AAGACTTCAACATTTGTCTT+TGG | + | chr2.3:24796082-24796101 | None:intergenic | 30.0% | |
| AAGGAAAATACTGGAAAAAG+GGG | - | chr2.3:24796566-24796585 | MS.gene86711:CDS | 30.0% | |
| AAGGAATCATACTTGCATTA+AGG | + | chr2.3:24797389-24797408 | None:intergenic | 30.0% | |
| ACATTCATCCAAAAACCAAA+TGG | + | chr2.3:24798355-24798374 | None:intergenic | 30.0% | |
| AGAACAGAAAAAAGTGAAAG+TGG | - | chr2.3:24795902-24795921 | MS.gene86711:intron | 30.0% | |
| AGGAATCATACTTGCATTAA+GGG | + | chr2.3:24797388-24797407 | None:intergenic | 30.0% | |
| ATAGAACCTAAAAGTTCATC+GGG | + | chr2.3:24795963-24795982 | None:intergenic | 30.0% | |
| ATATTTGTAGTAGGCATACT+TGG | + | chr2.3:24797555-24797574 | None:intergenic | 30.0% | |
| CAACTCAAGAACCTTAAAAT+TGG | + | chr2.3:24796703-24796722 | None:intergenic | 30.0% | |
| CACAAAAAATCACGCTTATT+GGG | - | chr2.3:24797419-24797438 | MS.gene86711:intron | 30.0% | |
| CCTAAAGTCTGTTTGTATAA+AGG | - | chr2.3:24798254-24798273 | MS.gene86711:CDS | 30.0% | |
| CCTTTATACAAACAGACTTT+AGG | + | chr2.3:24798257-24798276 | None:intergenic | 30.0% | |
| CTATCTTTCTTGATTGTCTT+AGG | - | chr2.3:24797733-24797752 | MS.gene86711:CDS | 30.0% | |
| CTCTAAGCAATATTTGTAGT+AGG | + | chr2.3:24797564-24797583 | None:intergenic | 30.0% | |
| GATAGAACCTAAAAGTTCAT+CGG | + | chr2.3:24795964-24795983 | None:intergenic | 30.0% | |
| TAACGAAGGAATATTAGACT+TGG | - | chr2.3:24796629-24796648 | MS.gene86711:CDS | 30.0% | |
| TAAGAAATCACAATTCTCGA+CGG | + | chr2.3:24796862-24796881 | None:intergenic | 30.0% | |
| TACTGTTCAATTCAAAGTTG+AGG | + | chr2.3:24797811-24797830 | None:intergenic | 30.0% | |
| TCAAAATACTCCTCATTTGT+AGG | + | chr2.3:24796423-24796442 | None:intergenic | 30.0% | |
| TCACAAAAAATCACGCTTAT+TGG | - | chr2.3:24797418-24797437 | MS.gene86711:intron | 30.0% | |
| TCTAAGGAGCAAAATCAAAT+TGG | + | chr2.3:24797596-24797615 | None:intergenic | 30.0% | |
| TCTTGTGATTATCTTAACGA+AGG | - | chr2.3:24796615-24796634 | MS.gene86711:CDS | 30.0% | |
| TGTATAAAGGGATATAAAGG+TGG | - | chr2.3:24798267-24798286 | MS.gene86711:CDS | 30.0% | |
| TTTCTTAACATGTGTCATGA+AGG | - | chr2.3:24797681-24797700 | MS.gene86711:intron | 30.0% | |
| TTTGTAATATGAATGTGCTC+AGG | - | chr2.3:24796928-24796947 | MS.gene86711:intron | 30.0% | |
| TTTGTCTTTGGTCAAAACTA+AGG | + | chr2.3:24796070-24796089 | None:intergenic | 30.0% | |
| ! | AAATTTTTGTTGCATCTCCT+TGG | - | chr2.3:24797257-24797276 | MS.gene86711:intron | 30.0% |
| ! | CATTTTTCCTCTTAAACTCT+AGG | - | chr2.3:24798131-24798150 | MS.gene86711:CDS | 30.0% |
| ! | TATTTGATCGATTTCGATCT+TGG | - | chr2.3:24798602-24798621 | MS.gene86711:intron | 30.0% |
| ! | TGAGGTTTTCTCCAATTTTA+AGG | - | chr2.3:24796689-24796708 | MS.gene86711:intron | 30.0% |
| !! | GTTTTTGGATGAATGTTCAT+GGG | - | chr2.3:24798359-24798378 | MS.gene86711:CDS | 30.0% |
| !!! | AAGTGTTTTTAAAGTCTGCT+GGG | + | chr2.3:24796763-24796782 | None:intergenic | 30.0% |
| !!! | ATAAGCGTGATTTTTTGTGA+TGG | + | chr2.3:24797418-24797437 | None:intergenic | 30.0% |
| !!! | GTTTTAAAATGGCGTGTAAT+AGG | - | chr2.3:24797977-24797996 | MS.gene86711:CDS | 30.0% |
| !!! | TAAGTGTTTTTAAAGTCTGC+TGG | + | chr2.3:24796764-24796783 | None:intergenic | 30.0% |
| !!! | TTTTTTGTGATGGCTCAAAA+AGG | + | chr2.3:24797408-24797427 | None:intergenic | 30.0% |
| AACTAAGGAAAAAAGACGCA+TGG | + | chr2.3:24798918-24798937 | None:intergenic | 35.0% | |
| AACTTGACCTAGAGTTTAAG+AGG | + | chr2.3:24798141-24798160 | None:intergenic | 35.0% | |
| ACCATACTTCTGTATAGACT+CGG | + | chr2.3:24798463-24798482 | None:intergenic | 35.0% | |
| ACGCATGGATTTATTGTGTA+TGG | + | chr2.3:24798903-24798922 | None:intergenic | 35.0% | |
| AGATGCAAAAAAGTGAGTCA+AGG | - | chr2.3:24797341-24797360 | MS.gene86711:intron | 35.0% | |
| GAAAAAAGTGAAAGTGGTAC+AGG | - | chr2.3:24795908-24795927 | MS.gene86711:intron | 35.0% | |
| GTGAGAACCCTAAAATAAAG+TGG | - | chr2.3:24798501-24798520 | MS.gene86711:intron | 35.0% | |
| TACAAACAGACTTTAGGCTA+CGG | + | chr2.3:24798251-24798270 | None:intergenic | 35.0% | |
| TACTTGGTTACTGTTCAGTA+AGG | + | chr2.3:24797539-24797558 | None:intergenic | 35.0% | |
| TCTTAAACTCTAGGTCAAGT+TGG | - | chr2.3:24798140-24798159 | MS.gene86711:CDS | 35.0% | |
| ! | ACGAAGAACTTGAAGTTTTG+GGG | + | chr2.3:24797033-24797052 | None:intergenic | 35.0% |
| ! | AGAAATTTTCGGTGGTATTC+TGG | - | chr2.3:24797130-24797149 | MS.gene86711:intron | 35.0% |
| ! | AGTTTTCCCGATGAACTTTT+AGG | - | chr2.3:24795954-24795973 | MS.gene86711:intron | 35.0% |
| ! | ATTTTCATGAAGAGTCAACC+AGG | - | chr2.3:24796272-24796291 | MS.gene86711:intron | 35.0% |
| ! | CACGAAGAACTTGAAGTTTT+GGG | + | chr2.3:24797034-24797053 | None:intergenic | 35.0% |
| ! | GACAATTTAGGAGAGAGTTT+TGG | + | chr2.3:24798420-24798439 | None:intergenic | 35.0% |
| ! | TATGAATGTGCTCAGGATTT+TGG | - | chr2.3:24796935-24796954 | MS.gene86711:CDS | 35.0% |
| ! | TCATGAAGATTTGGTCTTTG+AGG | - | chr2.3:24797007-24797026 | MS.gene86711:CDS | 35.0% |
| !! | GGTTTTTGGATGAATGTTCA+TGG | - | chr2.3:24798358-24798377 | MS.gene86711:CDS | 35.0% |
| !!! | GACCATTGATTTACCTTTTG+AGG | - | chr2.3:24796671-24796690 | MS.gene86711:intron | 35.0% |
| !!! | TGGTTTGTTTTGGCTCAAAA+GGG | - | chr2.3:24798206-24798225 | MS.gene86711:CDS | 35.0% |
| AATCACAATTCTCGACGGTA+AGG | + | chr2.3:24796857-24796876 | None:intergenic | 40.0% | |
| AATGATAGTCTTCCTTACCC+TGG | - | chr2.3:24798183-24798202 | MS.gene86711:CDS | 40.0% | |
| ACCGAGTCTATACAGAAGTA+TGG | - | chr2.3:24798459-24798478 | MS.gene86711:intron | 40.0% | |
| ACTGGAAAAAGGGGTGATTA+AGG | - | chr2.3:24796575-24796594 | MS.gene86711:CDS | 40.0% | |
| AGATTCTTTACAACCCTTCC+TGG | + | chr2.3:24796293-24796312 | None:intergenic | 40.0% | |
| AGCATCGCATCACAATTACT+CGG | + | chr2.3:24797490-24797509 | None:intergenic | 40.0% | |
| ATGGCGTGTAATAGGAATTG+TGG | - | chr2.3:24797985-24798004 | MS.gene86711:CDS | 40.0% | |
| ATTGTAAGACGGTCATCAAG+TGG | + | chr2.3:24796131-24796150 | None:intergenic | 40.0% | |
| CTTTGGTCAAAACTAAGGTC+AGG | + | chr2.3:24796065-24796084 | None:intergenic | 40.0% | |
| GAGTGCAAAAGAAAGAGCTA+TGG | + | chr2.3:24797843-24797862 | None:intergenic | 40.0% | |
| GTTCTCACAACTTCCATGTA+TGG | + | chr2.3:24795999-24796018 | None:intergenic | 40.0% | |
| GTTGCATAGCCATTGTAAGA+CGG | + | chr2.3:24796142-24796161 | None:intergenic | 40.0% | |
| TTAAAGTCTGCTGGGAATCA+GGG | + | chr2.3:24796755-24796774 | None:intergenic | 40.0% | |
| TTGGTTACTGTTCAGTAAGG+TGG | + | chr2.3:24797536-24797555 | None:intergenic | 40.0% | |
| ! | ACTTGATGACCGTCTTACAA+TGG | - | chr2.3:24796130-24796149 | MS.gene86711:intron | 40.0% |
| ! | GAGTCTATACAGAAGTATGG+TGG | - | chr2.3:24798462-24798481 | MS.gene86711:intron | 40.0% |
| ! | GCACGAAGAACTTGAAGTTT+TGG | + | chr2.3:24797035-24797054 | None:intergenic | 40.0% |
| ! | TTTAAAGTCTGCTGGGAATC+AGG | + | chr2.3:24796756-24796775 | None:intergenic | 40.0% |
| !!! | GTGGTTTGTTTTGGCTCAAA+AGG | - | chr2.3:24798205-24798224 | MS.gene86711:CDS | 40.0% |
| AAGTGTGCTTTCCAAGCGAT+GGG | - | chr2.3:24796019-24796038 | MS.gene86711:intron | 45.0% | |
| ACAGGTAGCTCCTACAAATG+AGG | - | chr2.3:24796410-24796429 | MS.gene86711:CDS | 45.0% | |
| CAAAACAAACCACCAGGGTA+AGG | + | chr2.3:24798198-24798217 | None:intergenic | 45.0% | |
| CATGAAGAGTCAACCAGGAA+GGG | - | chr2.3:24796277-24796296 | MS.gene86711:intron | 45.0% | |
| CGGATGGTACAACTCTTCAA+GGG | + | chr2.3:24796501-24796520 | None:intergenic | 45.0% | |
| GGGGTGGTTAAGGAAAATAC+TGG | - | chr2.3:24796557-24796576 | MS.gene86711:CDS | 45.0% | |
| TAAAGTCTGCTGGGAATCAG+GGG | + | chr2.3:24796754-24796773 | None:intergenic | 45.0% | |
| TACAATGGCTATGCAACGCA+AGG | - | chr2.3:24796145-24796164 | MS.gene86711:intron | 45.0% | |
| TCATGAAGAGTCAACCAGGA+AGG | - | chr2.3:24796276-24796295 | MS.gene86711:intron | 45.0% | |
| TCGGATGGTACAACTCTTCA+AGG | + | chr2.3:24796502-24796521 | None:intergenic | 45.0% | |
| TGACGGAATTCATGCATGAC+AGG | - | chr2.3:24796392-24796411 | MS.gene86711:CDS | 45.0% | |
| TGAGCCAAAACAAACCACCA+GGG | + | chr2.3:24798203-24798222 | None:intergenic | 45.0% | |
| TGATTGTCTTAGGGTCATCG+AGG | - | chr2.3:24797743-24797762 | MS.gene86711:CDS | 45.0% | |
| TGTGCAAGTGCGGATATTGT+GGG | - | chr2.3:24796537-24796556 | MS.gene86711:CDS | 45.0% | |
| TTGAGCCAAAACAAACCACC+AGG | + | chr2.3:24798204-24798223 | None:intergenic | 45.0% | |
| TTGTGCAAGTGCGGATATTG+TGG | - | chr2.3:24796536-24796555 | MS.gene86711:CDS | 45.0% | |
| ! | ATGGTGGCAGCTTTGATGAA+TGG | - | chr2.3:24798478-24798497 | MS.gene86711:intron | 45.0% |
| ! | TGGTGGCAGCTTTGATGAAT+GGG | - | chr2.3:24798479-24798498 | MS.gene86711:intron | 45.0% |
| !!! | CTTACCCTGGTGGTTTGTTT+TGG | - | chr2.3:24798196-24798215 | MS.gene86711:CDS | 45.0% |
| CAAGTGTGCTTTCCAAGCGA+TGG | - | chr2.3:24796018-24796037 | MS.gene86711:intron | 50.0% | |
| CACAACTCTCAGGCAAGTGT+CGG | + | chr2.3:24796521-24796540 | None:intergenic | 50.0% | |
| CCAAGCGATGGGAGTCATTA+TGG | - | chr2.3:24796030-24796049 | MS.gene86711:intron | 50.0% | |
| CCATAATGACTCCCATCGCT+TGG | + | chr2.3:24796033-24796052 | None:intergenic | 50.0% | |
| CGGATATTGTGGGGTGGTTA+AGG | - | chr2.3:24796547-24796566 | MS.gene86711:CDS | 50.0% | |
| CTACGGCTAACACACCTACA+GGG | + | chr2.3:24798234-24798253 | None:intergenic | 50.0% | |
| GATAGTCTTCCTTACCCTGG+TGG | - | chr2.3:24798186-24798205 | MS.gene86711:CDS | 50.0% | |
| GTGCAAGTGCGGATATTGTG+GGG | - | chr2.3:24796538-24796557 | MS.gene86711:CDS | 50.0% | |
| TACGGCTAACACACCTACAG+GGG | + | chr2.3:24798233-24798252 | None:intergenic | 50.0% | |
| TCTTAGGGTCATCGAGGTTC+AGG | - | chr2.3:24797749-24797768 | MS.gene86711:CDS | 50.0% | |
| CAAGTGCGGATATTGTGGGG+TGG | - | chr2.3:24796541-24796560 | MS.gene86711:CDS | 55.0% | |
| GCCTGAGAGTTGTGCAAGTG+CGG | - | chr2.3:24796527-24796546 | MS.gene86711:CDS | 55.0% | |
| GCTACGGCTAACACACCTAC+AGG | + | chr2.3:24798235-24798254 | None:intergenic | 55.0% | |
| GGTCATCGAGGTTCAGGCAT+GGG | - | chr2.3:24797755-24797774 | MS.gene86711:CDS | 55.0% | |
| TCCGCACTTGCACAACTCTC+AGG | + | chr2.3:24796531-24796550 | None:intergenic | 55.0% | |
| !! | ACTCTCAGGCAAGTGTCGGA+TGG | + | chr2.3:24796517-24796536 | None:intergenic | 55.0% |
| AGTCTGCTGGGAATCAGGGG+AGG | + | chr2.3:24796751-24796770 | None:intergenic | 60.0% | |
| GGCTCAAAAGGGACCCCTGT+AGG | - | chr2.3:24798217-24798236 | MS.gene86711:CDS | 60.0% | |
| GGGTCATCGAGGTTCAGGCA+TGG | - | chr2.3:24797754-24797773 | MS.gene86711:CDS | 60.0% | |
| GTCTGCTGGGAATCAGGGGA+GGG | + | chr2.3:24796750-24796769 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 24795891 | 24798944 | 24795891 | ID=MS.gene86711 |
| chr2.3 | mRNA | 24795891 | 24798944 | 24795891 | ID=MS.gene86711.t1;Parent=MS.gene86711 |
| chr2.3 | exon | 24798669 | 24798944 | 24798669 | ID=MS.gene86711.t1.exon1;Parent=MS.gene86711.t1 |
| chr2.3 | CDS | 24798669 | 24798944 | 24798669 | ID=cds.MS.gene86711.t1;Parent=MS.gene86711.t1 |
| chr2.3 | exon | 24797684 | 24798421 | 24797684 | ID=MS.gene86711.t1.exon2;Parent=MS.gene86711.t1 |
| chr2.3 | CDS | 24797684 | 24798421 | 24797684 | ID=cds.MS.gene86711.t1;Parent=MS.gene86711.t1 |
| chr2.3 | exon | 24796931 | 24797080 | 24796931 | ID=MS.gene86711.t1.exon3;Parent=MS.gene86711.t1 |
| chr2.3 | CDS | 24796931 | 24797080 | 24796931 | ID=cds.MS.gene86711.t1;Parent=MS.gene86711.t1 |
| chr2.3 | exon | 24796335 | 24796682 | 24796335 | ID=MS.gene86711.t1.exon4;Parent=MS.gene86711.t1 |
| chr2.3 | CDS | 24796335 | 24796682 | 24796335 | ID=cds.MS.gene86711.t1;Parent=MS.gene86711.t1 |
| chr2.3 | exon | 24795891 | 24795899 | 24795891 | ID=MS.gene86711.t1.exon5;Parent=MS.gene86711.t1 |
| chr2.3 | CDS | 24795891 | 24795899 | 24795891 | ID=cds.MS.gene86711.t1;Parent=MS.gene86711.t1 |
| Gene Sequence |
| Protein sequence |
