Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88345.t1 | KEH27638.1 | 93.7 | 319 | 17 | 2 | 1 | 316 | 1 | 319 | 3.40E-160 | 574.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88345.t1 | F4HWB6 | 47.1 | 312 | 135 | 2 | 1 | 312 | 89 | 370 | 2.3e-80 | 300.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88345.t1 | A0A072UEV5 | 93.7 | 319 | 17 | 2 | 1 | 316 | 1 | 319 | 2.5e-160 | 574.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene88345 | 0.851312 | 9.63E-61 | -1.69E-46 |
| MS.gene049669 | MS.gene88345 | 0.812985 | 3.22E-51 | -1.69E-46 |
| MS.gene050168 | MS.gene88345 | 0.809377 | 1.95E-50 | -1.69E-46 |
| MS.gene051983 | MS.gene88345 | 0.802751 | 4.83E-49 | -1.69E-46 |
| MS.gene052333 | MS.gene88345 | 0.802318 | 5.94E-49 | -1.69E-46 |
| MS.gene052389 | MS.gene88345 | 0.813586 | 2.37E-51 | -1.69E-46 |
| MS.gene054183 | MS.gene88345 | 0.852994 | 3.20E-61 | -1.69E-46 |
| MS.gene054468 | MS.gene88345 | 0.825734 | 3.99E-54 | -1.69E-46 |
| MS.gene054826 | MS.gene88345 | 0.81516 | 1.07E-51 | -1.69E-46 |
| MS.gene054918 | MS.gene88345 | 0.811369 | 7.25E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene88345 | 0.800539 | 1.37E-48 | -1.69E-46 |
| MS.gene055701 | MS.gene88345 | 0.855283 | 7.00E-62 | -1.69E-46 |
| MS.gene056480 | MS.gene88345 | 0.805027 | 1.63E-49 | -1.69E-46 |
| MS.gene056723 | MS.gene88345 | 0.810827 | 9.50E-51 | -1.69E-46 |
| MS.gene057156 | MS.gene88345 | -0.836337 | 9.93E-57 | -1.69E-46 |
| MS.gene058435 | MS.gene88345 | 0.833963 | 3.94E-56 | -1.69E-46 |
| MS.gene05872 | MS.gene88345 | 0.819288 | 1.26E-52 | -1.69E-46 |
| MS.gene059876 | MS.gene88345 | 0.82102 | 5.04E-53 | -1.69E-46 |
| MS.gene061114 | MS.gene88345 | -0.807982 | 3.87E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88345.t1 | MTR_5g024970 | 93.730 | 319 | 17 | 2 | 1 | 316 | 1 | 319 | 0.0 | 592 |
| MS.gene88345.t1 | MTR_5g024970 | 94.286 | 315 | 15 | 2 | 1 | 312 | 1 | 315 | 0.0 | 590 |
| MS.gene88345.t1 | MTR_5g024970 | 94.286 | 315 | 15 | 2 | 1 | 312 | 1 | 315 | 0.0 | 588 |
| MS.gene88345.t1 | MTR_5g024970 | 86.842 | 342 | 15 | 3 | 1 | 312 | 1 | 342 | 0.0 | 575 |
| MS.gene88345.t1 | MTR_5g024970 | 94.276 | 297 | 14 | 2 | 1 | 294 | 1 | 297 | 0.0 | 556 |
| MS.gene88345.t1 | MTR_5g024970 | 93.182 | 264 | 15 | 2 | 1 | 261 | 1 | 264 | 5.43e-177 | 490 |
| MS.gene88345.t1 | MTR_5g024970 | 93.182 | 264 | 15 | 2 | 1 | 261 | 1 | 264 | 1.85e-176 | 489 |
| MS.gene88345.t1 | MTR_5g024970 | 92.213 | 244 | 16 | 2 | 72 | 312 | 8 | 251 | 1.19e-160 | 452 |
| MS.gene88345.t1 | MTR_8g072560 | 60.897 | 312 | 111 | 1 | 1 | 312 | 1 | 301 | 1.55e-137 | 395 |
| MS.gene88345.t1 | MTR_8g006780 | 46.984 | 315 | 157 | 3 | 1 | 312 | 1 | 308 | 2.01e-103 | 309 |
| MS.gene88345.t1 | MTR_8g006775 | 41.433 | 321 | 172 | 6 | 1 | 312 | 1 | 314 | 8.36e-87 | 266 |
| MS.gene88345.t1 | MTR_5g024660 | 40.000 | 325 | 175 | 7 | 1 | 312 | 1 | 318 | 3.82e-81 | 252 |
| MS.gene88345.t1 | MTR_5g024640 | 39.938 | 323 | 178 | 6 | 1 | 312 | 1 | 318 | 1.99e-80 | 249 |
| MS.gene88345.t1 | MTR_5g024640 | 39.938 | 323 | 178 | 6 | 1 | 312 | 1 | 318 | 5.64e-80 | 249 |
| MS.gene88345.t1 | MTR_8g073160 | 39.744 | 312 | 172 | 5 | 1 | 308 | 1 | 300 | 1.04e-74 | 234 |
| MS.gene88345.t1 | MTR_5g024640 | 39.344 | 305 | 169 | 6 | 1 | 294 | 1 | 300 | 1.55e-74 | 231 |
| MS.gene88345.t1 | MTR_8g006780 | 55.128 | 156 | 69 | 1 | 1 | 155 | 1 | 156 | 7.57e-61 | 197 |
| MS.gene88345.t1 | MTR_8g006780 | 41.176 | 102 | 60 | 0 | 211 | 312 | 137 | 238 | 6.86e-19 | 86.3 |
| MS.gene88345.t1 | MTR_5g024520 | 34.713 | 314 | 141 | 8 | 1 | 312 | 1 | 252 | 2.04e-54 | 181 |
| MS.gene88345.t1 | MTR_5g024580 | 46.988 | 166 | 87 | 1 | 1 | 165 | 1 | 166 | 5.23e-52 | 169 |
| MS.gene88345.t1 | MTR_5g054950 | 28.571 | 336 | 210 | 6 | 8 | 315 | 18 | 351 | 2.50e-43 | 154 |
| MS.gene88345.t1 | MTR_7g074190 | 30.032 | 313 | 190 | 5 | 9 | 312 | 28 | 320 | 4.91e-42 | 150 |
| MS.gene88345.t1 | MTR_1g108390 | 26.471 | 340 | 207 | 7 | 13 | 315 | 25 | 358 | 6.03e-36 | 135 |
| MS.gene88345.t1 | MTR_5g024560 | 29.878 | 164 | 108 | 4 | 155 | 312 | 35 | 197 | 3.94e-17 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88345.t1 | AT1G76520 | 45.687 | 313 | 139 | 3 | 3 | 312 | 4 | 288 | 3.41e-102 | 305 |
| MS.gene88345.t1 | AT1G76520 | 45.687 | 313 | 139 | 3 | 3 | 312 | 4 | 288 | 3.41e-102 | 305 |
| MS.gene88345.t1 | AT1G20925 | 47.604 | 313 | 132 | 3 | 1 | 312 | 89 | 370 | 5.91e-102 | 307 |
| MS.gene88345.t1 | AT5G65980 | 43.574 | 319 | 147 | 4 | 1 | 312 | 1 | 293 | 4.74e-88 | 268 |
| MS.gene88345.t1 | AT5G65980 | 43.574 | 319 | 147 | 4 | 1 | 312 | 1 | 293 | 5.49e-88 | 269 |
| MS.gene88345.t1 | AT2G17500 | 41.956 | 317 | 156 | 4 | 1 | 312 | 1 | 294 | 5.94e-86 | 264 |
| MS.gene88345.t1 | AT2G17500 | 41.956 | 317 | 156 | 4 | 1 | 312 | 1 | 294 | 5.94e-86 | 264 |
| MS.gene88345.t1 | AT2G17500 | 41.956 | 317 | 156 | 4 | 1 | 312 | 1 | 294 | 5.94e-86 | 264 |
| MS.gene88345.t1 | AT2G17500 | 41.956 | 317 | 156 | 4 | 1 | 312 | 1 | 294 | 5.94e-86 | 264 |
| MS.gene88345.t1 | AT1G76530 | 43.711 | 318 | 163 | 4 | 1 | 312 | 1 | 308 | 3.22e-77 | 242 |
| MS.gene88345.t1 | AT1G76530 | 43.711 | 318 | 163 | 4 | 1 | 312 | 1 | 308 | 3.22e-77 | 242 |
| MS.gene88345.t1 | AT1G76530 | 41.367 | 278 | 144 | 5 | 1 | 272 | 1 | 265 | 3.46e-66 | 211 |
| MS.gene88345.t1 | AT5G01990 | 29.412 | 306 | 210 | 2 | 8 | 312 | 29 | 329 | 7.82e-46 | 160 |
| MS.gene88345.t1 | AT1G71090 | 26.807 | 332 | 210 | 6 | 13 | 315 | 22 | 349 | 8.89e-39 | 142 |
Find 65 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAATATGCCTCTGAAATT+TGG | 0.158249 | 5.3:-14613915 | None:intergenic |
| GAAGGTTGGCACCCATTATA+AGG | 0.252589 | 5.3:-14614292 | None:intergenic |
| GGCTTATGCTTCACTTTCTA+TGG | 0.255328 | 5.3:+14613210 | MS.gene88345:CDS |
| CCTGATGTCTGCTATCAATA+TGG | 0.257377 | 5.3:+14613184 | MS.gene88345:CDS |
| TCCAACAATAACCCTTATAA+TGG | 0.265344 | 5.3:+14614280 | MS.gene88345:CDS |
| GAAGACTCTGCTTCCATGTT+AGG | 0.267831 | 5.3:+14614168 | MS.gene88345:CDS |
| ATGGGTGCCAACCTTCTTAA+AGG | 0.277420 | 5.3:+14614299 | MS.gene88345:CDS |
| TGGTCTGATTGGTGGTAATT+TGG | 0.295476 | 5.3:+14612598 | MS.gene88345:CDS |
| TCCATTACCTTGGAGGCTTC+AGG | 0.317819 | 5.3:+14613607 | MS.gene88345:CDS |
| AAAGACAAAGGTAGTCCTTT+TGG | 0.344296 | 5.3:+14613157 | MS.gene88345:CDS |
| GATGTATGAACAGGAAATTT+AGG | 0.346379 | 5.3:+14613100 | MS.gene88345:intron |
| AAAATATGCCTCTGAAATTT+GGG | 0.358669 | 5.3:-14613914 | None:intergenic |
| ATAGCTGGAATAATGATTAT+AGG | 0.364811 | 5.3:-14613130 | None:intergenic |
| AATTTATGAACTTACATGAT+TGG | 0.376286 | 5.3:-14612482 | None:intergenic |
| CTTGATAACATTAATTTGTT+GGG | 0.381662 | 5.3:+14612439 | MS.gene88345:CDS |
| CAGATTGTTGGATTTATTGT+TGG | 0.384088 | 5.3:+14614087 | MS.gene88345:intron |
| GTATTACTAGTCACTGGAAT+TGG | 0.385060 | 5.3:+14612403 | MS.gene88345:CDS |
| CCTTTGTCTTTGCATATAGC+TGG | 0.404968 | 5.3:-14613145 | None:intergenic |
| TGAGTCTCAGCAGAAAATTC+AGG | 0.405411 | 5.3:+14613726 | MS.gene88345:CDS |
| ACTTGATAACATTAATTTGT+TGG | 0.419935 | 5.3:+14612438 | MS.gene88345:CDS |
| TCAAGAAATGTTCACAAAGA+AGG | 0.421658 | 5.3:+14613568 | MS.gene88345:CDS |
| TTATTGTTGGTGTAGTTCCT+TGG | 0.428012 | 5.3:+14614100 | MS.gene88345:CDS |
| GTGTTCAATCCTGGTCTGAT+TGG | 0.430345 | 5.3:+14612587 | MS.gene88345:CDS |
| CCCATTATAAGGGTTATTGT+TGG | 0.430983 | 5.3:-14614281 | None:intergenic |
| GTTCATGCCAGTGAACATAT+TGG | 0.431360 | 5.3:+14612757 | MS.gene88345:CDS |
| GTACATTATGTGTTCAATCC+TGG | 0.435461 | 5.3:+14612578 | MS.gene88345:CDS |
| TCCTGAAGCCTCCAAGGTAA+TGG | 0.442213 | 5.3:-14613608 | None:intergenic |
| ATAGTAGGTGTCTGTTCTGC+AGG | 0.446697 | 5.3:+14612857 | MS.gene88345:CDS |
| AAGACTCTGCTTCCATGTTA+GGG | 0.449266 | 5.3:+14614169 | MS.gene88345:CDS |
| CCAACAATAACCCTTATAAT+GGG | 0.459789 | 5.3:+14614281 | MS.gene88345:CDS |
| TGGTTACGTAGGTTAATGAT+TGG | 0.470577 | 5.3:+14614120 | MS.gene88345:CDS |
| TGTTAGGCTCAGCCTTAGGA+TGG | 0.473160 | 5.3:+14612789 | MS.gene88345:CDS |
| CATACCGCCCCAAGAGTTGC+TGG | 0.478756 | 5.3:-14613939 | None:intergenic |
| AAGGTTGGCACCCATTATAA+GGG | 0.487760 | 5.3:-14614291 | None:intergenic |
| CCATATTGATAGCAGACATC+AGG | 0.488390 | 5.3:-14613184 | None:intergenic |
| AATGTAACCAATATGTTCAC+TGG | 0.491378 | 5.3:-14612764 | None:intergenic |
| CACATAGAAGGTCTCATAGT+AGG | 0.498129 | 5.3:+14612842 | MS.gene88345:CDS |
| ATCAAAGTATTACTAGTCAC+TGG | 0.505619 | 5.3:+14612397 | MS.gene88345:CDS |
| GAAAATATAAGTCCAACAAA+AGG | 0.509369 | 5.3:+14613664 | MS.gene88345:CDS |
| TAGTGACTCCATTACCTTGG+AGG | 0.515228 | 5.3:+14613600 | MS.gene88345:CDS |
| CTGATGTCTGCTATCAATAT+GGG | 0.519197 | 5.3:+14613185 | MS.gene88345:CDS |
| TTCAATCCTGGTCTGATTGG+TGG | 0.521156 | 5.3:+14612590 | MS.gene88345:CDS |
| ACTAGTAATACTTTGATCAC+AGG | 0.528906 | 5.3:-14612391 | None:intergenic |
| TTTGATAATGATCCATCCTA+AGG | 0.531283 | 5.3:-14612801 | None:intergenic |
| GAGTCTTCAATCACATGAAG+AGG | 0.534955 | 5.3:-14614153 | None:intergenic |
| AAGCCTCCTAGACACATAGA+AGG | 0.535027 | 5.3:+14612830 | MS.gene88345:CDS |
| ATGAGACCTTCTATGTGTCT+AGG | 0.549972 | 5.3:-14612836 | None:intergenic |
| GATAAAATTAAGCATAAATG+TGG | 0.550997 | 5.3:+14613876 | MS.gene88345:CDS |
| ATTTGTTGGGAAAAGATGCA+AGG | 0.562343 | 5.3:+14612452 | MS.gene88345:CDS |
| CAGACATCAGGATCTCCAAA+AGG | 0.564669 | 5.3:-14613172 | None:intergenic |
| TACATCTCCTGAAGCCTCCA+AGG | 0.567379 | 5.3:-14613614 | None:intergenic |
| TTAGGCAACCCAAATTTCAG+AGG | 0.599786 | 5.3:+14613906 | MS.gene88345:CDS |
| TGTATCAGAATCACTCATAG+AGG | 0.602773 | 5.3:+14613633 | MS.gene88345:CDS |
| GTGTAGTTCCTTGGTTACGT+AGG | 0.608969 | 5.3:+14614109 | MS.gene88345:CDS |
| CTAGTAATACTTTGATCACA+GGG | 0.614093 | 5.3:-14612390 | None:intergenic |
| AAGTAGTGACTCCATTACCT+TGG | 0.615088 | 5.3:+14613597 | MS.gene88345:CDS |
| TTCACCAGCAACTCTTGGGG+CGG | 0.616074 | 5.3:+14613935 | MS.gene88345:CDS |
| TTGAGATGCATACCCTAACA+TGG | 0.620373 | 5.3:-14614181 | None:intergenic |
| AGACCTTCTATGTGTCTAGG+AGG | 0.621742 | 5.3:-14612833 | None:intergenic |
| ATCATTAACCTACGTAACCA+AGG | 0.630812 | 5.3:-14614117 | None:intergenic |
| CTTATGTGTACAACATAATG+CGG | 0.631816 | 5.3:+14613539 | MS.gene88345:CDS |
| AAGTCCAACAAAAGGCAATG+TGG | 0.646470 | 5.3:+14613672 | MS.gene88345:CDS |
| CCAGCTATATGCAAAGACAA+AGG | 0.657060 | 5.3:+14613145 | MS.gene88345:CDS |
| AAATTACCACCAATCAGACC+AGG | 0.672473 | 5.3:-14612596 | None:intergenic |
| TGTCTGCTATCAATATGGGA+TGG | 0.678270 | 5.3:+14613189 | MS.gene88345:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCCTCAAAATAAAAATT+AGG | - | chr5.3:14612688-14612707 | None:intergenic | 15.0% |
| !! | ATTAAGTCTAATATTATGAA+AGG | - | chr5.3:14613766-14613785 | None:intergenic | 15.0% |
| !! | TTAAGTCTAATATTATGAAA+GGG | - | chr5.3:14613765-14613784 | None:intergenic | 15.0% |
| !!! | ACTTTTTGATTTTCATAATT+AGG | + | chr5.3:14612732-14612751 | MS.gene88345:intron | 15.0% |
| !!! | TTAATTCTTAAATCACATTT+TGG | + | chr5.3:14613263-14613282 | MS.gene88345:intron | 15.0% |
| !! | AAGATGCATTAAACAATAAA+CGG | - | chr5.3:14613055-14613074 | None:intergenic | 20.0% |
| !! | AATTTATGAACTTACATGAT+TGG | - | chr5.3:14612485-14612504 | None:intergenic | 20.0% |
| !! | GATAAAATTAAGCATAAATG+TGG | + | chr5.3:14613876-14613895 | MS.gene88345:CDS | 20.0% |
| !! | GATTTAAGAATTAATGAGAA+AGG | - | chr5.3:14613257-14613276 | None:intergenic | 20.0% |
| !! | TTATATCACTATATTTGCAT+TGG | - | chr5.3:14614009-14614028 | None:intergenic | 20.0% |
| !!! | ACTTGATAACATTAATTTGT+TGG | + | chr5.3:14612438-14612457 | MS.gene88345:CDS | 20.0% |
| !!! | ATATTGGTTACATTTTTGTT+AGG | + | chr5.3:14612773-14612792 | MS.gene88345:CDS | 20.0% |
| !!! | ATCAATCATCTTTATGATTT+TGG | + | chr5.3:14614204-14614223 | MS.gene88345:intron | 20.0% |
| !!! | ATTTTTTACTATGTGAATCA+TGG | + | chr5.3:14613334-14613353 | MS.gene88345:intron | 20.0% |
| !!! | CTTGATAACATTAATTTGTT+GGG | + | chr5.3:14612439-14612458 | MS.gene88345:CDS | 20.0% |
| !!! | TATGATTTTGGAATTACATA+AGG | + | chr5.3:14614216-14614235 | MS.gene88345:intron | 20.0% |
| !!! | TTTTGATTTTCATAATTAGG+TGG | + | chr5.3:14612735-14612754 | MS.gene88345:intron | 20.0% |
| !!! | TTTTTTACTATGTGAATCAT+GGG | + | chr5.3:14613335-14613354 | MS.gene88345:intron | 20.0% |
| ! | AAATATTGATCCTTTCTTGT+TGG | - | chr5.3:14613829-14613848 | None:intergenic | 25.0% |
| ! | AAGAAAAAAACCAACAAGAA+AGG | + | chr5.3:14613816-14613835 | MS.gene88345:intron | 25.0% |
| ! | AATATGTTACTCATGAAGAA+AGG | + | chr5.3:14614036-14614055 | MS.gene88345:intron | 25.0% |
| ! | ATAGCTGGAATAATGATTAT+AGG | - | chr5.3:14613133-14613152 | None:intergenic | 25.0% |
| ! | GAAAATATAAGTCCAACAAA+AGG | + | chr5.3:14613664-14613683 | MS.gene88345:CDS | 25.0% |
| ! | TAGTTATGACTAAAGTCAAA+CGG | - | chr5.3:14613381-14613400 | None:intergenic | 25.0% |
| ! | TTTATGATTGATGTATGAAC+AGG | + | chr5.3:14613091-14613110 | MS.gene88345:intron | 25.0% |
| !! | CATAAATGTGGAATGATTTT+AGG | + | chr5.3:14613888-14613907 | MS.gene88345:CDS | 25.0% |
| !!! | AAAATATGCCTCTGAAATTT+GGG | - | chr5.3:14613917-14613936 | None:intergenic | 25.0% |
| !!! | TATCTGTTTTACCTTTAAGA+AGG | - | chr5.3:14614313-14614332 | None:intergenic | 25.0% |
| !!! | TGCTCCTAATTTTTATTTTG+AGG | + | chr5.3:14612681-14612700 | MS.gene88345:intron | 25.0% |
| AATGTAACCAATATGTTCAC+TGG | - | chr5.3:14612767-14612786 | None:intergenic | 30.0% | |
| ACTAGTAATACTTTGATCAC+AGG | - | chr5.3:14612394-14612413 | None:intergenic | 30.0% | |
| ATAAAAACAGCTCCAATCTA+TGG | - | chr5.3:14613514-14613533 | None:intergenic | 30.0% | |
| CAGATTGTTGGATTTATTGT+TGG | + | chr5.3:14614087-14614106 | MS.gene88345:intron | 30.0% | |
| CCAACAATAACCCTTATAAT+GGG | + | chr5.3:14614281-14614300 | MS.gene88345:CDS | 30.0% | |
| CTAGTAATACTTTGATCACA+GGG | - | chr5.3:14612393-14612412 | None:intergenic | 30.0% | |
| CTGAACTTGTACTTATTCTT+TGG | + | chr5.3:14613483-14613502 | MS.gene88345:intron | 30.0% | |
| CTTATGTGTACAACATAATG+CGG | + | chr5.3:14613539-14613558 | MS.gene88345:CDS | 30.0% | |
| GAATAAAATAACCACTCACA+AGG | - | chr5.3:14612654-14612673 | None:intergenic | 30.0% | |
| GATGTATGAACAGGAAATTT+AGG | + | chr5.3:14613100-14613119 | MS.gene88345:intron | 30.0% | |
| TAAATCCAACAATCTGCATA+AGG | - | chr5.3:14614083-14614102 | None:intergenic | 30.0% | |
| TCAAGAAATGTTCACAAAGA+AGG | + | chr5.3:14613568-14613587 | MS.gene88345:CDS | 30.0% | |
| TCCAACAATAACCCTTATAA+TGG | + | chr5.3:14614280-14614299 | MS.gene88345:CDS | 30.0% | |
| TCTAATCTTCTTATGTTTGC+AGG | + | chr5.3:14613848-14613867 | MS.gene88345:intron | 30.0% | |
| ! | ATCAAAGTATTACTAGTCAC+TGG | + | chr5.3:14612397-14612416 | MS.gene88345:CDS | 30.0% |
| ! | ATTTTCCTTATGCAGATTGT+TGG | + | chr5.3:14614075-14614094 | MS.gene88345:intron | 30.0% |
| !! | GAAAATATGCCTCTGAAATT+TGG | - | chr5.3:14613918-14613937 | None:intergenic | 30.0% |
| !! | TGTTTTACCTTTAAGAAGGT+TGG | - | chr5.3:14614309-14614328 | None:intergenic | 30.0% |
| !! | TTTGATAATGATCCATCCTA+AGG | - | chr5.3:14612804-14612823 | None:intergenic | 30.0% |
| !!! | AGATTGGAGCTGTTTTTATA+TGG | + | chr5.3:14613515-14613534 | MS.gene88345:intron | 30.0% |
| ATCATTAACCTACGTAACCA+AGG | - | chr5.3:14614120-14614139 | None:intergenic | 35.0% | |
| CCCATTATAAGGGTTATTGT+TGG | - | chr5.3:14614284-14614303 | None:intergenic | 35.0% | |
| CTGATGTCTGCTATCAATAT+GGG | + | chr5.3:14613185-14613204 | MS.gene88345:CDS | 35.0% | |
| GTACATTATGTGTTCAATCC+TGG | + | chr5.3:14612578-14612597 | MS.gene88345:CDS | 35.0% | |
| GTATTACTAGTCACTGGAAT+TGG | + | chr5.3:14612403-14612422 | MS.gene88345:CDS | 35.0% | |
| TAATGTTGTATCCTTGTGAG+TGG | + | chr5.3:14612640-14612659 | MS.gene88345:intron | 35.0% | |
| TGGTTACGTAGGTTAATGAT+TGG | + | chr5.3:14614120-14614139 | MS.gene88345:CDS | 35.0% | |
| TGTATCAGAATCACTCATAG+AGG | + | chr5.3:14613633-14613652 | MS.gene88345:CDS | 35.0% | |
| TTATTGTTGGTGTAGTTCCT+TGG | + | chr5.3:14614100-14614119 | MS.gene88345:CDS | 35.0% | |
| ! | AAAGACAAAGGTAGTCCTTT+TGG | + | chr5.3:14613157-14613176 | MS.gene88345:CDS | 35.0% |
| ! | ACTATGTGAATCATGGGTTA+TGG | + | chr5.3:14613341-14613360 | MS.gene88345:intron | 35.0% |
| ! | ATATTTTCACCAGCAACTCT+TGG | + | chr5.3:14613930-14613949 | MS.gene88345:CDS | 35.0% |
| ! | ATTTGTTGGGAAAAGATGCA+AGG | + | chr5.3:14612452-14612471 | MS.gene88345:CDS | 35.0% |
| ! | TATTTTCACCAGCAACTCTT+GGG | + | chr5.3:14613931-14613950 | MS.gene88345:CDS | 35.0% |
| ! | TCTTTGGAGAAACCATAGAT+TGG | + | chr5.3:14613499-14613518 | MS.gene88345:intron | 35.0% |
| AAATTACCACCAATCAGACC+AGG | - | chr5.3:14612599-14612618 | None:intergenic | 40.0% | |
| AAGACTCTGCTTCCATGTTA+GGG | + | chr5.3:14614169-14614188 | MS.gene88345:CDS | 40.0% | |
| AAGGTTGGCACCCATTATAA+GGG | - | chr5.3:14614294-14614313 | None:intergenic | 40.0% | |
| AAGTAGTGACTCCATTACCT+TGG | + | chr5.3:14613597-14613616 | MS.gene88345:CDS | 40.0% | |
| AAGTCCAACAAAAGGCAATG+TGG | + | chr5.3:14613672-14613691 | MS.gene88345:CDS | 40.0% | |
| ATATCGAACCTGAGACTTTG+AGG | - | chr5.3:14612952-14612971 | None:intergenic | 40.0% | |
| ATGAGACCTTCTATGTGTCT+AGG | - | chr5.3:14612839-14612858 | None:intergenic | 40.0% | |
| CACATAGAAGGTCTCATAGT+AGG | + | chr5.3:14612842-14612861 | MS.gene88345:CDS | 40.0% | |
| CCAGCTATATGCAAAGACAA+AGG | + | chr5.3:14613145-14613164 | MS.gene88345:CDS | 40.0% | |
| CCTGATGTCTGCTATCAATA+TGG | + | chr5.3:14613184-14613203 | MS.gene88345:CDS | 40.0% | |
| CCTTTGTCTTTGCATATAGC+TGG | - | chr5.3:14613148-14613167 | None:intergenic | 40.0% | |
| GAGTCTTCAATCACATGAAG+AGG | - | chr5.3:14614156-14614175 | None:intergenic | 40.0% | |
| GGCTTATGCTTCACTTTCTA+TGG | + | chr5.3:14613210-14613229 | MS.gene88345:CDS | 40.0% | |
| GTTCATGCCAGTGAACATAT+TGG | + | chr5.3:14612757-14612776 | MS.gene88345:CDS | 40.0% | |
| TGAGTCTCAGCAGAAAATTC+AGG | + | chr5.3:14613726-14613745 | MS.gene88345:CDS | 40.0% | |
| TGTCTGCTATCAATATGGGA+TGG | + | chr5.3:14613189-14613208 | MS.gene88345:CDS | 40.0% | |
| TTAGGCAACCCAAATTTCAG+AGG | + | chr5.3:14613906-14613925 | MS.gene88345:CDS | 40.0% | |
| TTGAGATGCATACCCTAACA+TGG | - | chr5.3:14614184-14614203 | None:intergenic | 40.0% | |
| ! | ATTTTCACCAGCAACTCTTG+GGG | + | chr5.3:14613932-14613951 | MS.gene88345:CDS | 40.0% |
| ! | CCATATTGATAGCAGACATC+AGG | - | chr5.3:14613187-14613206 | None:intergenic | 40.0% |
| ! | TCATCCACATTGCCTTTTGT+TGG | - | chr5.3:14613679-14613698 | None:intergenic | 40.0% |
| ! | TGGTCTGATTGGTGGTAATT+TGG | + | chr5.3:14612598-14612617 | MS.gene88345:CDS | 40.0% |
| ! | TTTTTGTTAGGCTCAGCCTT+AGG | + | chr5.3:14612785-14612804 | MS.gene88345:CDS | 40.0% |
| AAGCCTCCTAGACACATAGA+AGG | + | chr5.3:14612830-14612849 | MS.gene88345:CDS | 45.0% | |
| AGACCTTCTATGTGTCTAGG+AGG | - | chr5.3:14612836-14612855 | None:intergenic | 45.0% | |
| ATAGTAGGTGTCTGTTCTGC+AGG | + | chr5.3:14612857-14612876 | MS.gene88345:CDS | 45.0% | |
| ATGGGTGCCAACCTTCTTAA+AGG | + | chr5.3:14614299-14614318 | MS.gene88345:CDS | 45.0% | |
| CAGACATCAGGATCTCCAAA+AGG | - | chr5.3:14613175-14613194 | None:intergenic | 45.0% | |
| GAAGACTCTGCTTCCATGTT+AGG | + | chr5.3:14614168-14614187 | MS.gene88345:CDS | 45.0% | |
| GAAGGTTGGCACCCATTATA+AGG | - | chr5.3:14614295-14614314 | None:intergenic | 45.0% | |
| GAATATCGAACCTGAGACCT+GGG | + | chr5.3:14612915-14612934 | MS.gene88345:intron | 45.0% | |
| GTGTAGTTCCTTGGTTACGT+AGG | + | chr5.3:14614109-14614128 | MS.gene88345:CDS | 45.0% | |
| GTGTTCAATCCTGGTCTGAT+TGG | + | chr5.3:14612587-14612606 | MS.gene88345:CDS | 45.0% | |
| TAGTGACTCCATTACCTTGG+AGG | + | chr5.3:14613600-14613619 | MS.gene88345:CDS | 45.0% | |
| TGAATATCGAACCTGAGACC+TGG | + | chr5.3:14612914-14612933 | MS.gene88345:intron | 45.0% | |
| TTCAATCCTGGTCTGATTGG+TGG | + | chr5.3:14612590-14612609 | MS.gene88345:CDS | 45.0% | |
| ATGCTCCTCCTCAAAGTCTC+AGG | + | chr5.3:14612941-14612960 | MS.gene88345:intron | 50.0% | |
| TACATCTCCTGAAGCCTCCA+AGG | - | chr5.3:14613617-14613636 | None:intergenic | 50.0% | |
| TCCATTACCTTGGAGGCTTC+AGG | + | chr5.3:14613607-14613626 | MS.gene88345:CDS | 50.0% | |
| TCCTGAAGCCTCCAAGGTAA+TGG | - | chr5.3:14613611-14613630 | None:intergenic | 50.0% | |
| TGTTAGGCTCAGCCTTAGGA+TGG | + | chr5.3:14612789-14612808 | MS.gene88345:CDS | 50.0% | |
| ! | TCGAACCTGAGACTTTGAGG+AGG | - | chr5.3:14612949-14612968 | None:intergenic | 50.0% |
| TTCACCAGCAACTCTTGGGG+CGG | + | chr5.3:14613935-14613954 | MS.gene88345:CDS | 55.0% | |
| ! | TTGAGGAGGAGCATACTCCC+AGG | - | chr5.3:14612935-14612954 | None:intergenic | 55.0% |
| CATACCGCCCCAAGAGTTGC+TGG | - | chr5.3:14613942-14613961 | None:intergenic | 60.0% | |
| GGAGCATACTCCCAGGTCTC+AGG | - | chr5.3:14612928-14612947 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 14612355 | 14614337 | 14612355 | ID=MS.gene88345 |
| chr5.3 | mRNA | 14612355 | 14614337 | 14612355 | ID=MS.gene88345.t1;Parent=MS.gene88345 |
| chr5.3 | exon | 14612355 | 14612489 | 14612355 | ID=MS.gene88345.t1.exon1;Parent=MS.gene88345.t1 |
| chr5.3 | CDS | 14612355 | 14612489 | 14612355 | ID=cds.MS.gene88345.t1;Parent=MS.gene88345.t1 |
| chr5.3 | exon | 14612575 | 14612654 | 14612575 | ID=MS.gene88345.t1.exon2;Parent=MS.gene88345.t1 |
| chr5.3 | CDS | 14612575 | 14612654 | 14612575 | ID=cds.MS.gene88345.t1;Parent=MS.gene88345.t1 |
| chr5.3 | exon | 14612754 | 14612878 | 14612754 | ID=MS.gene88345.t1.exon3;Parent=MS.gene88345.t1 |
| chr5.3 | CDS | 14612754 | 14612878 | 14612754 | ID=cds.MS.gene88345.t1;Parent=MS.gene88345.t1 |
| chr5.3 | exon | 14613113 | 14613234 | 14613113 | ID=MS.gene88345.t1.exon4;Parent=MS.gene88345.t1 |
| chr5.3 | CDS | 14613113 | 14613234 | 14613113 | ID=cds.MS.gene88345.t1;Parent=MS.gene88345.t1 |
| chr5.3 | exon | 14613517 | 14613747 | 14613517 | ID=MS.gene88345.t1.exon5;Parent=MS.gene88345.t1 |
| chr5.3 | CDS | 14613517 | 14613747 | 14613517 | ID=cds.MS.gene88345.t1;Parent=MS.gene88345.t1 |
| chr5.3 | exon | 14613870 | 14613956 | 14613870 | ID=MS.gene88345.t1.exon6;Parent=MS.gene88345.t1 |
| chr5.3 | CDS | 14613870 | 14613956 | 14613870 | ID=cds.MS.gene88345.t1;Parent=MS.gene88345.t1 |
| chr5.3 | exon | 14614090 | 14614190 | 14614090 | ID=MS.gene88345.t1.exon7;Parent=MS.gene88345.t1 |
| chr5.3 | CDS | 14614090 | 14614190 | 14614090 | ID=cds.MS.gene88345.t1;Parent=MS.gene88345.t1 |
| chr5.3 | exon | 14614268 | 14614337 | 14614268 | ID=MS.gene88345.t1.exon8;Parent=MS.gene88345.t1 |
| chr5.3 | CDS | 14614268 | 14614337 | 14614268 | ID=cds.MS.gene88345.t1;Parent=MS.gene88345.t1 |
| Gene Sequence |
| Protein sequence |
