AlfalfaGEDB | MS.gene88951

M. sativa cultivar XinJiangDaYe / MS.gene88951

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0016787 GO:0016788
PFAM: PF01535.23 PF03161.16 PF13041.9 PF17177.7

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88951.t1	XP_013466196.1	95.4	608	28	0	1	608	181	788	0.00E+00	1185.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88951.t1	Q9XIL5	58.8	609	246	4	2	607	230	836	1.4e-214	747.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88951.t1	A0A072VEK1	95.4	608	28	0	1	608	181	788	0.0e+00	1185.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050464	MS.gene88951	0.807441	5.05E-50	-1.69E-46
MS.gene050642	MS.gene88951	0.819661	1.03E-52	-1.69E-46
MS.gene051983	MS.gene88951	0.826609	2.47E-54	-1.69E-46
MS.gene052077	MS.gene88951	0.800294	1.54E-48	-1.69E-46
MS.gene053836	MS.gene88951	0.831631	1.50E-55	-1.69E-46
MS.gene053971	MS.gene88951	0.805395	1.36E-49	-1.69E-46
MS.gene054719	MS.gene88951	0.842366	2.70E-58	-1.69E-46
MS.gene05553	MS.gene88951	0.826538	2.57E-54	-1.69E-46
MS.gene056979	MS.gene88951	0.8156	8.51E-52	-1.69E-46
MS.gene057121	MS.gene88951	0.800221	1.60E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88951.t1	MTR_1g026035	95.395	608	28	0	1	608	181	788	0.0	1210
MS.gene88951.t1	MTR_0381s0010	90.132	608	25	1	1	608	2	574	0.0	1126
MS.gene88951.t1	MTR_1g112240	25.000	364	255	8	3	363	130	478	1.11e-20	96.3
MS.gene88951.t1	MTR_1g112240	23.101	316	231	5	65	378	118	423	1.12e-14	77.4
MS.gene88951.t1	MTR_3g105900	22.923	349	253	6	20	366	280	614	5.53e-17	85.5
MS.gene88951.t1	MTR_3g105900	23.864	352	254	6	1	351	331	669	5.18e-13	72.8
MS.gene88951.t1	MTR_3g114700	22.043	372	273	8	16	386	149	504	2.48e-15	79.3
MS.gene88951.t1	MTR_6g077540	23.103	290	210	6	64	351	240	518	6.84e-15	78.2
MS.gene88951.t1	MTR_6g077540	21.379	290	215	5	39	327	113	390	6.23e-12	68.9
MS.gene88951.t1	MTR_4g075270	22.449	343	248	7	32	371	310	637	7.93e-15	78.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88951.t1	AT2G15820	58.785	609	246	4	2	607	230	836	0.0	736
MS.gene88951.t1	AT5G61990	23.262	374	265	9	14	378	596	956	2.46e-15	80.5
MS.gene88951.t1	AT2G35130	21.330	361	271	6	1	360	146	494	7.43e-15	78.2
MS.gene88951.t1	AT1G63400	21.892	370	264	10	1	365	181	530	7.60e-15	78.2
MS.gene88951.t1	AT5G64320	21.884	329	238	8	25	351	302	613	1.51e-14	77.4
MS.gene88951.t1	AT1G09680	24.088	274	196	4	1	274	301	562	1.76e-14	77.0
MS.gene88951.t1	AT1G09680	21.131	336	246	7	22	356	252	569	2.28e-12	70.5
MS.gene88951.t1	AT5G04810	21.448	359	263	8	7	363	309	650	5.90e-14	75.9
MS.gene88951.t1	AT5G04810	21.448	359	263	8	7	363	309	650	7.03e-14	75.5
MS.gene88951.t1	AT1G63130	22.714	339	237	10	32	365	208	526	1.04e-13	74.7

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Find 138 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTCTTATAAGCGAACC+AGG	0.587841	1.3:-250055	MS.gene88951:CDS
AAATATCTTTATGCACATCA+AGG	0.541678	1.3:+249969	None:intergenic
AACAGAGAGAAATACTGATT+GGG	0.489307	1.3:-249130	MS.gene88951:CDS
AACCACCTATGAACAAGTTT+TGG	0.306684	1.3:+248852	None:intergenic
AACCTTGAACAGAAGAACTA+AGG	0.520036	1.3:+250164	None:intergenic
AAGAAAGAATAGAAGCATTG+AGG	0.611980	1.3:-249901	MS.gene88951:CDS
AAGATTAAGGGAAGTCGTGA+GGG	0.613821	1.3:-248759	MS.gene88951:CDS
AAGCTCTTATAAGCGAACCA+GGG	0.725063	1.3:-250054	MS.gene88951:CDS
AAGGGAAAGGTATTCTGGAT+TGG	0.541846	1.3:-248678	MS.gene88951:CDS
AATAAACATATGATGGTGTA+AGG	0.401918	1.3:+249534	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATGTAAGAGATTTCACTA+AGG	-	chr1.3:250254-250273	MS.gene88951:CDS	30.0%
ATATTTATGGTGGCCTAATT+TGG	-	chr1.3:248900-248919	MS.gene88951:CDS	30.0%
ATCACATGATAAATTGGAAG+AGG	-	chr1.3:249366-249385	MS.gene88951:CDS	30.0%
CATTTCTCTAAATATCTCCA+AGG	+	chr1.3:249173-249192	None:intergenic	30.0%
GTAAGATGATGTTACATGAT+CGG	+	chr1.3:249537-249556	None:intergenic	30.0%
GTGCATAAAGATATTTATGG+TGG	-	chr1.3:248890-248909	MS.gene88951:CDS	30.0%
TAAGATGATGTTACATGATC+GGG	+	chr1.3:249536-249555	None:intergenic	30.0%
TATCATCGTTTGGTTACAAA+TGG	-	chr1.3:248860-248879	MS.gene88951:CDS	30.0%
TCATGTAACATCATCTTACA+TGG	-	chr1.3:249538-249557	MS.gene88951:CDS	30.0%
TTACATGGATACCTATATTC+AGG	-	chr1.3:249553-249572	MS.gene88951:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	248524	250350	248524	ID=MS.gene88951
chr1.3	mRNA	248524	250350	248524	ID=MS.gene88951.t1;Parent=MS.gene88951
chr1.3	exon	248524	250350	248524	ID=MS.gene88951.t1.exon1;Parent=MS.gene88951.t1
chr1.3	CDS	248524	250350	248524	ID=cds.MS.gene88951.t1;Parent=MS.gene88951.t1

Gene Sequence

>MS.gene88951

ATGCAACGCAGTTGGTATCGGTTTGATTTTGCTCTTTCTACTAGGCTAGCAGATTACATGGGTAAAGAGCGCAAGTTTACAAAGTGCCGTGAGGTATTTGATGATATTATCAATCAAGGCCGTGTTCCCAGCGAGTCCACGTTCCATATATTGATTGTGGCTTACCTTAGTTCTTCTGTTCAAGGTTGTTTGGATGATGCATTTGACATATTCCACCGAATGATTCAATTGGGTGGATACCAGCCGCGTCTTAGCTTGCATAATTCCCTCTTCAAAGCTCTTATAAGCGAACCAGGGAACTTTTCAAAGCAGTACCTTAAGCAAGCTGAGTTTATATATCATCGTTTGGTTACAAATGGCCTTGATGTGCATAAAGATATTTATGGTGGCCTAATTTGGCTGCATAGCTATCAGGATTCCATAGACAAAGAAAGAATAGAAGCATTGAGGCAAGAGATGCTACGCGCTGGTATTGATGAAAATCAAGAGGTGCTAGTATCGATCTTGAGGGCCTGCGCAAGGGAGGGGGAGGTGGAGGAAGCAGAGAAAACTTGGTCCAAACTTTTGCAGTTTGAAAGCAACCCCCCATCACAGGCTTTTGTGTACAAAATGGAAGTCCACTCTAAGGTTGGTATGCCTATGAAGTCCTTGGAGATATTTAGAGAAATGAAGTTGAAATTAGGTAAGACAAGTGTTGCAGCATATAATAAAATAATTGAGATTCTATGCAAAGCACAAGAATCCGAATTTGCAGAATCAATCATGACAGATTTTGTCAAGAGTGGTCTGAAGCCCCTTACACCATCATATGTTTATTTACTAAACATGTACTTCAATATGGAATCACATGATAAATTGGAAGAGGCGTTCTCTCAATGCCTCGAGAAATGCCATCCTAATAGTGTTATATATAGTATATATTTAGATTCTTTGGTGAAAGTTGGTAAAATTGACAAGGCTGGAGATATCTTTAGCCAAATGTTTCGTGATGCAAGTATTGGTGTTAATGCCCGATCATGTAACATCATCTTACATGGATACCTATATTCAGGAAATCACTTAAAGGCAGAGAAGATCTATGACTTAATGTGCCAAAATAAGTATGAAATTGATGCCCCATTAATGGAAAAACTTGAATACATCCTGAGTTTGAGAAGGAAAATTATTAAAAAGCCAATGAGCCTGAAGTTAAATAAAGAACAGAGAGAAATACTGATTGGGATGCTTCTAGGTGGTTTGCAAATTGATTCTGATGACAAAAATAAGAACTATATTATCCATTTCAATTTTGATGGAAATTCTGTGAGTCATTACGTCTTGAAGAGTCATATACATCGCCAGTTTTATGAGTGGCTACATCCTACTTCTAAGCCAAGTGGTGACAGTAAGAACATACCAGATAAGTTTTGCACCATTGCAAGCTCTCATTTTGGCTTTTATGCCGATCAGTTTTGGCCAAATGGTCAACCTACAATTCCAAAACTTGTTCATAGGTGGTTGTCACCTTGTGTTCTTGCATACTGGTACATGTATGGAGGGCATCGAAATTCATCGGGGGATGTTTTGCTGAAGATTAAGGGAAGTCGTGAGGGTGTGGAGAACATTGTCAAAAAGTTCAAAGCCATGTCCATTGATTGTAAAGTCAAGGGAAAGGGAAAGGTATTCTGGATTGGTATTCTGGGAAGCAATACAACTTGGTTCTGGAAATTGGTTGAGCCATATATTCTTGAAGATGTAAGAGATTTCACTAAGGCAGGTGTGAATATAATGAGACAGGATTTAACAGAAACTCAAGATATTAACTTCTGTAGTGAATCAGACGAATGA

Protein sequence

>MS.gene88951.t1

MQRSWYRFDFALSTRLADYMGKERKFTKCREVFDDIINQGRVPSESTFHILIVAYLSSSVQGCLDDAFDIFHRMIQLGGYQPRLSLHNSLFKALISEPGNFSKQYLKQAEFIYHRLVTNGLDVHKDIYGGLIWLHSYQDSIDKERIEALRQEMLRAGIDENQEVLVSILRACAREGEVEEAEKTWSKLLQFESNPPSQAFVYKMEVHSKVGMPMKSLEIFREMKLKLGKTSVAAYNKIIEILCKAQESEFAESIMTDFVKSGLKPLTPSYVYLLNMYFNMESHDKLEEAFSQCLEKCHPNSVIYSIYLDSLVKVGKIDKAGDIFSQMFRDASIGVNARSCNIILHGYLYSGNHLKAEKIYDLMCQNKYEIDAPLMEKLEYILSLRRKIIKKPMSLKLNKEQREILIGMLLGGLQIDSDDKNKNYIIHFNFDGNSVSHYVLKSHIHRQFYEWLHPTSKPSGDSKNIPDKFCTIASSHFGFYADQFWPNGQPTIPKLVHRWLSPCVLAYWYMYGGHRNSSGDVLLKIKGSREGVENIVKKFKAMSIDCKVKGKGKVFWIGILGSNTTWFWKLVEPYILEDVRDFTKAGVNIMRQDLTETQDINFCSESDE