Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89383.t1 | KEH17746.1 | 92.3 | 196 | 15 | 0 | 34 | 229 | 203 | 398 | 2.30E-105 | 391.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89383.t1 | A0A072TKK1 | 92.3 | 196 | 15 | 0 | 34 | 229 | 203 | 398 | 1.7e-105 | 391.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene89383 | 0.801313 | 9.55E-49 | -1.69E-46 |
| MS.gene051181 | MS.gene89383 | 0.813239 | 2.83E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene89383 | 0.816565 | 5.18E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene89383 | 0.801224 | 9.96E-49 | -1.69E-46 |
| MS.gene054236 | MS.gene89383 | 0.800896 | 1.16E-48 | -1.69E-46 |
| MS.gene054651 | MS.gene89383 | 0.802802 | 4.72E-49 | -1.69E-46 |
| MS.gene054775 | MS.gene89383 | 0.802896 | 4.51E-49 | -1.69E-46 |
| MS.gene056050 | MS.gene89383 | 0.803762 | 2.99E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene89383 | 0.821459 | 3.99E-53 | -1.69E-46 |
| MS.gene056366 | MS.gene89383 | 0.802428 | 5.64E-49 | -1.69E-46 |
| MS.gene058294 | MS.gene89383 | 0.800662 | 1.30E-48 | -1.69E-46 |
| MS.gene059272 | MS.gene89383 | 0.800733 | 1.25E-48 | -1.69E-46 |
| MS.gene059584 | MS.gene89383 | 0.818766 | 1.65E-52 | -1.69E-46 |
| MS.gene059625 | MS.gene89383 | 0.800608 | 1.33E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89383.t1 | MTR_5g077900 | 92.347 | 196 | 15 | 0 | 34 | 229 | 29 | 224 | 3.03e-136 | 382 |
| MS.gene89383.t1 | MTR_0002s1270 | 92.347 | 196 | 15 | 0 | 34 | 229 | 203 | 398 | 6.00e-136 | 387 |
| MS.gene89383.t1 | MTR_7g046380 | 91.979 | 187 | 15 | 0 | 34 | 220 | 211 | 397 | 4.03e-129 | 370 |
| MS.gene89383.t1 | MTR_2g092960 | 37.688 | 199 | 119 | 2 | 34 | 231 | 1025 | 1219 | 3.74e-45 | 161 |
| MS.gene89383.t1 | MTR_0462s0020 | 37.500 | 184 | 109 | 2 | 46 | 227 | 112 | 291 | 1.09e-40 | 141 |
| MS.gene89383.t1 | MTR_8g017000 | 38.806 | 201 | 116 | 3 | 34 | 231 | 493 | 689 | 1.62e-38 | 141 |
| MS.gene89383.t1 | MTR_2g037270 | 38.308 | 201 | 117 | 3 | 34 | 231 | 493 | 689 | 6.96e-38 | 139 |
| MS.gene89383.t1 | MTR_0057s0200 | 94.915 | 59 | 3 | 0 | 173 | 231 | 1 | 59 | 5.11e-36 | 122 |
| MS.gene89383.t1 | MTR_3g011560 | 35.176 | 199 | 113 | 3 | 34 | 231 | 493 | 676 | 1.01e-33 | 128 |
| MS.gene89383.t1 | MTR_4g066320 | 85.484 | 62 | 8 | 1 | 170 | 230 | 59 | 120 | 1.26e-33 | 117 |
| MS.gene89383.t1 | MTR_8g051620 | 61.538 | 78 | 30 | 0 | 34 | 111 | 29 | 106 | 2.39e-30 | 108 |
| MS.gene89383.t1 | MTR_8g051620 | 60.000 | 80 | 32 | 0 | 34 | 113 | 29 | 108 | 3.15e-30 | 108 |
| MS.gene89383.t1 | MTR_3g028430 | 74.074 | 54 | 5 | 1 | 178 | 231 | 15 | 59 | 1.08e-19 | 79.7 |
| MS.gene89383.t1 | MTR_4g066300 | 88.235 | 34 | 4 | 0 | 169 | 202 | 5 | 38 | 1.07e-14 | 67.0 |
| MS.gene89383.t1 | MTR_2g086200 | 60.000 | 50 | 20 | 0 | 182 | 231 | 185 | 234 | 2.79e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 42 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGAAAGTGTTTGGGATTT+TGG | 0.107550 | 3.3:+33222799 | MS.gene89383:CDS |
| TTGCCATTAGGTTGCTTTCT+TGG | 0.248489 | 3.3:-33224079 | None:intergenic |
| GCAATAGAAAGAAGGTTAAA+TGG | 0.271188 | 3.3:+33223249 | MS.gene89383:CDS |
| GGATTAAAATCCAAGCATAC+TGG | 0.319311 | 3.3:-33222824 | None:intergenic |
| ACAAATAGATCGAAAGTGTT+TGG | 0.322044 | 3.3:+33222791 | MS.gene89383:CDS |
| GTTAACATATAGAGCTTTAG+AGG | 0.328169 | 3.3:+33223208 | MS.gene89383:intron |
| TCATTGCTTCATTAAGATCT+TGG | 0.330442 | 3.3:-33223087 | None:intergenic |
| TATAAGTCATCATCAGTTAA+TGG | 0.351177 | 3.3:-33224293 | None:intergenic |
| TCTTGACTTGTATAAGGCTT+AGG | 0.381448 | 3.3:+33224346 | MS.gene89383:CDS |
| TAATACTAAAACTAAAGTTC+AGG | 0.382008 | 3.3:+33222856 | MS.gene89383:CDS |
| CAAATAGATCGAAAGTGTTT+GGG | 0.382377 | 3.3:+33222792 | MS.gene89383:CDS |
| AGAGGTTCATCAACTTGCTC+AGG | 0.406730 | 3.3:+33223226 | MS.gene89383:CDS |
| GACAACTAAACTATTGTCCT+TGG | 0.409668 | 3.3:-33223050 | None:intergenic |
| TATCCACAATCATTGCCATT+AGG | 0.411955 | 3.3:-33224091 | None:intergenic |
| TATACTTACTTATATAGATA+TGG | 0.415179 | 3.3:-33222929 | None:intergenic |
| TCTCACTTCACCATGTATGT+TGG | 0.471244 | 3.3:+33221949 | None:intergenic |
| CTGCTAATATTACTAAGTCT+TGG | 0.472781 | 3.3:+33224146 | MS.gene89383:CDS |
| ATATGATTTGCGAAACCAAT+GGG | 0.486055 | 3.3:+33224313 | MS.gene89383:CDS |
| TAGCCAAGAAAGCAACCTAA+TGG | 0.495668 | 3.3:+33224076 | MS.gene89383:intron |
| CAACCTAATGGCAATGATTG+TGG | 0.497368 | 3.3:+33224088 | MS.gene89383:CDS |
| TCATCATCAGTTAATGGCGT+TGG | 0.497730 | 3.3:-33224287 | None:intergenic |
| CAAGAAAACAAGTTGCCCAT+TGG | 0.504204 | 3.3:-33224328 | None:intergenic |
| GTTAATAATTATTTGTCCCA+AGG | 0.509187 | 3.3:+33223033 | MS.gene89383:CDS |
| CGTATTAGACAGTTGTTGGT+GGG | 0.518435 | 3.3:+33222611 | MS.gene89383:CDS |
| AATACTAAAACTAAAGTTCA+GGG | 0.519185 | 3.3:+33222857 | MS.gene89383:CDS |
| ACAACTAAACTATTGTCCTT+GGG | 0.519949 | 3.3:-33223049 | None:intergenic |
| GGAGCAGTCACCCATGTTCA+AGG | 0.520167 | 3.3:+33221970 | MS.gene89383:CDS |
| TCGTATTAGACAGTTGTTGG+TGG | 0.523813 | 3.3:+33222610 | MS.gene89383:CDS |
| TGCTCAGGGCAATAGAAAGA+AGG | 0.550095 | 3.3:+33223241 | MS.gene89383:CDS |
| AGTTGTTGGTGGGTAATGCT+TGG | 0.552427 | 3.3:+33222621 | MS.gene89383:CDS |
| GAGGTTCATCAACTTGCTCA+GGG | 0.558482 | 3.3:+33223227 | MS.gene89383:CDS |
| GATTAAAATCCAAGCATACT+GGG | 0.559851 | 3.3:-33222823 | None:intergenic |
| TAGTCGATTTCCTTGAACAT+GGG | 0.575201 | 3.3:-33221980 | None:intergenic |
| TATATGATTTGCGAAACCAA+TGG | 0.577102 | 3.3:+33224312 | MS.gene89383:CDS |
| TAATATTACTAAGTCTTGGA+TGG | 0.604101 | 3.3:+33224150 | MS.gene89383:CDS |
| GATCTTGGTGCATTGAACAA+AGG | 0.604500 | 3.3:-33223072 | None:intergenic |
| TTCAGGGACACATACAAACT+AGG | 0.610492 | 3.3:+33222873 | MS.gene89383:CDS |
| GGTGACTGCTCCAACATACA+TGG | 0.615414 | 3.3:-33221959 | None:intergenic |
| TCTACGTGTGCAGAAGACAC+TGG | 0.621651 | 3.3:+33223008 | MS.gene89383:intron |
| GTAGTCGATTTCCTTGAACA+TGG | 0.631797 | 3.3:-33221981 | None:intergenic |
| TATTACTAAGTCTTGGATGG+AGG | 0.643493 | 3.3:+33224153 | MS.gene89383:CDS |
| AGCAATACTTGAAACACACA+AGG | 0.689942 | 3.3:-33222003 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACTCAAATTATTTAGAAA+GGG | + | chr3.3:33223752-33223771 | MS.gene89383:intron | 15.0% |
| !! | AACTAATCACTTTATAAAAA+TGG | + | chr3.3:33224042-33224061 | MS.gene89383:intron | 15.0% |
| !! | GTATTATACAAAAGAATTAT+TGG | - | chr3.3:33223950-33223969 | None:intergenic | 15.0% |
| !! | TAAACTCAAATTATTTAGAA+AGG | + | chr3.3:33223751-33223770 | MS.gene89383:intron | 15.0% |
| !! | TATACTTACTTATATAGATA+TGG | - | chr3.3:33222932-33222951 | None:intergenic | 15.0% |
| !!! | AAATTTGTTTCTTTACTTAT+TGG | + | chr3.3:33222469-33222488 | MS.gene89383:intron | 15.0% |
| !!! | AGAAGATTGTAAATTTTTTA+TGG | - | chr3.3:33223525-33223544 | None:intergenic | 15.0% |
| !!! | CTTTGATGATTTTTTTAATT+TGG | + | chr3.3:33223186-33223205 | MS.gene89383:intron | 15.0% |
| !!! | CTTTTATACTATTATCAATA+TGG | + | chr3.3:33222689-33222708 | MS.gene89383:intron | 15.0% |
| !!! | GAAAGAGAATTTTTTTTTAT+TGG | + | chr3.3:33222376-33222395 | MS.gene89383:intron | 15.0% |
| !!! | TGTTAATTTTAAATTTGTCT+AGG | + | chr3.3:33222744-33222763 | MS.gene89383:intron | 15.0% |
| !! | AACACTTAAATATTGAATTG+TGG | - | chr3.3:33222728-33222747 | None:intergenic | 20.0% |
| !! | AAGATGTATCAATTTAGATT+AGG | + | chr3.3:33222430-33222449 | MS.gene89383:intron | 20.0% |
| !! | AATACTAAAACTAAAGTTCA+GGG | + | chr3.3:33222857-33222876 | MS.gene89383:CDS | 20.0% |
| !! | AATTGAAAACATATAGGTTT+AGG | + | chr3.3:33223584-33223603 | MS.gene89383:intron | 20.0% |
| !! | ATTGAAAACATATAGGTTTA+GGG | + | chr3.3:33223585-33223604 | MS.gene89383:intron | 20.0% |
| !! | TAAAGTAAAAAAATTCACTG+AGG | + | chr3.3:33223783-33223802 | MS.gene89383:intron | 20.0% |
| !! | TAATACAAGAAACAATCATA+CGG | - | chr3.3:33223332-33223351 | None:intergenic | 20.0% |
| !! | TAATACTAAAACTAAAGTTC+AGG | + | chr3.3:33222856-33222875 | MS.gene89383:CDS | 20.0% |
| !!! | AGATTGTAAATTTTTTATGG+AGG | - | chr3.3:33223522-33223541 | None:intergenic | 20.0% |
| !!! | ATTGTTTCTTGTATTAAAAG+TGG | + | chr3.3:33223336-33223355 | MS.gene89383:intron | 20.0% |
| !!! | GTTTTAGTATTATGATCTTT+TGG | - | chr3.3:33222848-33222867 | None:intergenic | 20.0% |
| !!! | TAAACCTATATGTTTTCAAT+TGG | - | chr3.3:33223585-33223604 | None:intergenic | 20.0% |
| !!! | TATTTTGCATATTTTCAGTT+TGG | + | chr3.3:33222298-33222317 | MS.gene89383:intron | 20.0% |
| ! | AAATATACAGGGAACAATTA+AGG | - | chr3.3:33223308-33223327 | None:intergenic | 25.0% |
| ! | AATCATACGGAAAATATACA+GGG | - | chr3.3:33223319-33223338 | None:intergenic | 25.0% |
| ! | ACAATCAAAAACAAAGAGTA+AGG | - | chr3.3:33222511-33222530 | None:intergenic | 25.0% |
| ! | ACGTAGAAGAACAATTATTA+AGG | - | chr3.3:33222995-33223014 | None:intergenic | 25.0% |
| ! | ATAAACAATATCAGCAATCA+AGG | - | chr3.3:33222556-33222575 | None:intergenic | 25.0% |
| ! | ATGCAAAATAAACTTTGACA+TGG | - | chr3.3:33222288-33222307 | None:intergenic | 25.0% |
| ! | GTTAATAATTATTTGTCCCA+AGG | + | chr3.3:33223033-33223052 | MS.gene89383:CDS | 25.0% |
| ! | TAAAAAAATTCACTGAGGTA+CGG | + | chr3.3:33223788-33223807 | MS.gene89383:intron | 25.0% |
| ! | TAATATTACTAAGTCTTGGA+TGG | + | chr3.3:33224150-33224169 | MS.gene89383:CDS | 25.0% |
| ! | TATAAGTCATCATCAGTTAA+TGG | - | chr3.3:33224296-33224315 | None:intergenic | 25.0% |
| ! | TATATTAACCTACACATTGT+AGG | + | chr3.3:33224253-33224272 | MS.gene89383:intron | 25.0% |
| ! | TTGGTTAAGTAGTGTAAAAA+AGG | - | chr3.3:33223931-33223950 | None:intergenic | 25.0% |
| !! | ACTTTTCTATTCTACAACTT+TGG | + | chr3.3:33222648-33222667 | MS.gene89383:CDS | 25.0% |
| !! | TAGCTTAATTGATTTAGTAG+TGG | - | chr3.3:33223657-33223676 | None:intergenic | 25.0% |
| !!! | GTTATACATTTTAGTGTTGT+AGG | - | chr3.3:33223167-33223186 | None:intergenic | 25.0% |
| !!! | TTGTTTTCTTGACTTGTATA+AGG | + | chr3.3:33224340-33224359 | MS.gene89383:CDS | 25.0% |
| AACAAGAACCATACTTACTT+TGG | - | chr3.3:33223282-33223301 | None:intergenic | 30.0% | |
| ACAACAGTATCTATTCATGA+AGG | - | chr3.3:33223972-33223991 | None:intergenic | 30.0% | |
| ACAACTAAACTATTGTCCTT+GGG | - | chr3.3:33223052-33223071 | None:intergenic | 30.0% | |
| ACAAGAACCATACTTACTTT+GGG | - | chr3.3:33223281-33223300 | None:intergenic | 30.0% | |
| ATAACTGTTATGTGCTTTCA+CGG | + | chr3.3:33222163-33222182 | MS.gene89383:intron | 30.0% | |
| ATTATTTAGAAAGGGTAGTC+TGG | + | chr3.3:33223760-33223779 | MS.gene89383:intron | 30.0% | |
| CAATCATACGGAAAATATAC+AGG | - | chr3.3:33223320-33223339 | None:intergenic | 30.0% | |
| CTGCTAATATTACTAAGTCT+TGG | + | chr3.3:33224146-33224165 | MS.gene89383:CDS | 30.0% | |
| GAAACAAATTTCTACCACAA+TGG | - | chr3.3:33222460-33222479 | None:intergenic | 30.0% | |
| GATTAAAATCCAAGCATACT+GGG | - | chr3.3:33222826-33222845 | None:intergenic | 30.0% | |
| GCAATAGAAAGAAGGTTAAA+TGG | + | chr3.3:33223249-33223268 | MS.gene89383:CDS | 30.0% | |
| GCAGTGAAACAATATAATCT+TGG | + | chr3.3:33223438-33223457 | MS.gene89383:intron | 30.0% | |
| GGAGGATAAACAAGAATAAA+AGG | - | chr3.3:33223504-33223523 | None:intergenic | 30.0% | |
| GTAGCCAATTGAAAACATAT+AGG | + | chr3.3:33223578-33223597 | MS.gene89383:intron | 30.0% | |
| TCATTGCTTCATTAAGATCT+TGG | - | chr3.3:33223090-33223109 | None:intergenic | 30.0% | |
| ! | ATATGATTTGCGAAACCAAT+GGG | + | chr3.3:33224313-33224332 | MS.gene89383:CDS | 30.0% |
| ! | GTTAACATATAGAGCTTTAG+AGG | + | chr3.3:33223208-33223227 | MS.gene89383:intron | 30.0% |
| ! | TAGACTTAGCTTGATTACAT+TGG | + | chr3.3:33223815-33223834 | MS.gene89383:intron | 30.0% |
| ! | TATATGATTTGCGAAACCAA+TGG | + | chr3.3:33224312-33224331 | MS.gene89383:CDS | 30.0% |
| ! | TTTTCGTATTAGACAGTTGT+TGG | + | chr3.3:33222607-33222626 | MS.gene89383:CDS | 30.0% |
| !! | ACAAATAGATCGAAAGTGTT+TGG | + | chr3.3:33222791-33222810 | MS.gene89383:CDS | 30.0% |
| !! | CAAATAGATCGAAAGTGTTT+GGG | + | chr3.3:33222792-33222811 | MS.gene89383:CDS | 30.0% |
| AAAGCAAATTGTTGTCACCA+AGG | + | chr3.3:33223609-33223628 | MS.gene89383:intron | 35.0% | |
| AAGCAAATTGTTGTCACCAA+GGG | + | chr3.3:33223610-33223629 | MS.gene89383:intron | 35.0% | |
| ACACTTTGTAAGCACAACAA+TGG | - | chr3.3:33222107-33222126 | None:intergenic | 35.0% | |
| AGATCTAACTCTGTTCTGTA+TGG | - | chr3.3:33223851-33223870 | None:intergenic | 35.0% | |
| AGCAATACTTGAAACACACA+AGG | - | chr3.3:33222006-33222025 | None:intergenic | 35.0% | |
| ATTGAAGACCTACAATGTGT+AGG | - | chr3.3:33224264-33224283 | None:intergenic | 35.0% | |
| CCATGTGAATGTACAGTAAA+AGG | - | chr3.3:33223419-33223438 | None:intergenic | 35.0% | |
| CTTTCTTGGCTACAAATGAA+TGG | - | chr3.3:33224068-33224087 | None:intergenic | 35.0% | |
| GACAACTAAACTATTGTCCT+TGG | - | chr3.3:33223053-33223072 | None:intergenic | 35.0% | |
| GATCTAACTCTGTTCTGTAT+GGG | - | chr3.3:33223850-33223869 | None:intergenic | 35.0% | |
| GATTGTCACATTGTGAATCT+CGG | + | chr3.3:33222525-33222544 | MS.gene89383:intron | 35.0% | |
| GGATTAAAATCCAAGCATAC+TGG | - | chr3.3:33222827-33222846 | None:intergenic | 35.0% | |
| TAACTGTTATGTGCTTTCAC+GGG | + | chr3.3:33222164-33222183 | MS.gene89383:intron | 35.0% | |
| TACAGAACAGAGTTAGATCT+AGG | + | chr3.3:33223851-33223870 | MS.gene89383:intron | 35.0% | |
| TATCCACAATCATTGCCATT+AGG | - | chr3.3:33224094-33224113 | None:intergenic | 35.0% | |
| TATTACTAAGTCTTGGATGG+AGG | + | chr3.3:33224153-33224172 | MS.gene89383:CDS | 35.0% | |
| TGCTTCTGCTTATAAAAAGC+TGG | + | chr3.3:33223895-33223914 | MS.gene89383:intron | 35.0% | |
| TTTGTAAGCACAACAATGGT+GGG | - | chr3.3:33222103-33222122 | None:intergenic | 35.0% | |
| ! | AGATCTAGGATTCCATTACA+TGG | + | chr3.3:33223865-33223884 | MS.gene89383:intron | 35.0% |
| ! | CCTTTTACTGTACATTCACA+TGG | + | chr3.3:33223416-33223435 | MS.gene89383:intron | 35.0% |
| ! | TAGTCGATTTCCTTGAACAT+GGG | - | chr3.3:33221983-33222002 | None:intergenic | 35.0% |
| !! | TGCTTGCTGTGTTAAAATGT+GGG | + | chr3.3:33222225-33222244 | MS.gene89383:intron | 35.0% |
| !!! | ATCGAAAGTGTTTGGGATTT+TGG | + | chr3.3:33222799-33222818 | MS.gene89383:CDS | 35.0% |
| AAGCATGTGAGTCCATGTAA+TGG | - | chr3.3:33223880-33223899 | None:intergenic | 40.0% | |
| ACGAAAAGAGAGAATTGAGC+TGG | - | chr3.3:33222594-33222613 | None:intergenic | 40.0% | |
| CAACCTAATGGCAATGATTG+TGG | + | chr3.3:33224088-33224107 | MS.gene89383:CDS | 40.0% | |
| CAAGAAAACAAGTTGCCCAT+TGG | - | chr3.3:33224331-33224350 | None:intergenic | 40.0% | |
| CGTATTAGACAGTTGTTGGT+GGG | + | chr3.3:33222611-33222630 | MS.gene89383:CDS | 40.0% | |
| CTTTGTAAGCACAACAATGG+TGG | - | chr3.3:33222104-33222123 | None:intergenic | 40.0% | |
| GTTTCGTCCCAAAGTAAGTA+TGG | + | chr3.3:33223271-33223290 | MS.gene89383:intron | 40.0% | |
| TAGCCAAGAAAGCAACCTAA+TGG | + | chr3.3:33224076-33224095 | MS.gene89383:intron | 40.0% | |
| TCATCATCAGTTAATGGCGT+TGG | - | chr3.3:33224290-33224309 | None:intergenic | 40.0% | |
| TCGTATTAGACAGTTGTTGG+TGG | + | chr3.3:33222610-33222629 | MS.gene89383:CDS | 40.0% | |
| TTAGATTAGGAGCTCCATTG+TGG | + | chr3.3:33222443-33222462 | MS.gene89383:intron | 40.0% | |
| TTCAGGGACACATACAAACT+AGG | + | chr3.3:33222873-33222892 | MS.gene89383:CDS | 40.0% | |
| ! | AATGGTGGGACTCAAAGAAA+TGG | - | chr3.3:33222089-33222108 | None:intergenic | 40.0% |
| ! | GATCTTGGTGCATTGAACAA+AGG | - | chr3.3:33223075-33223094 | None:intergenic | 40.0% |
| ! | GTAGTCGATTTCCTTGAACA+TGG | - | chr3.3:33221984-33222003 | None:intergenic | 40.0% |
| ! | TTGCCATTAGGTTGCTTTCT+TGG | - | chr3.3:33224082-33224101 | None:intergenic | 40.0% |
| !! | GTGCTTGCTGTGTTAAAATG+TGG | + | chr3.3:33222224-33222243 | MS.gene89383:intron | 40.0% |
| AGATACGTATCCACCAGTCA+AGG | + | chr3.3:33222339-33222358 | MS.gene89383:intron | 45.0% | |
| CTAAGAAACGAACACACCCT+TGG | - | chr3.3:33223629-33223648 | None:intergenic | 45.0% | |
| TGCTCAGGGCAATAGAAAGA+AGG | + | chr3.3:33223241-33223260 | MS.gene89383:CDS | 45.0% | |
| ! | AGAGGTTCATCAACTTGCTC+AGG | + | chr3.3:33223226-33223245 | MS.gene89383:CDS | 45.0% |
| ! | AGTTGTTGGTGGGTAATGCT+TGG | + | chr3.3:33222621-33222640 | MS.gene89383:CDS | 45.0% |
| ! | GAGGTTCATCAACTTGCTCA+GGG | + | chr3.3:33223227-33223246 | MS.gene89383:CDS | 45.0% |
| ! | GATTTTGGACCCAGTATGCT+TGG | + | chr3.3:33222814-33222833 | MS.gene89383:CDS | 45.0% |
| !! | ATAAGTAATTAATATTAATA+AGG | - | chr3.3:33224236-33224255 | None:intergenic | 5.0% |
| AAGTCGTGAACCTTGACTGG+TGG | - | chr3.3:33222352-33222371 | None:intergenic | 50.0% | |
| TCGAAGTCGTGAACCTTGAC+TGG | - | chr3.3:33222355-33222374 | None:intergenic | 50.0% | |
| TCTACGTGTGCAGAAGACAC+TGG | + | chr3.3:33223008-33223027 | MS.gene89383:intron | 50.0% | |
| GGAGCAGTCACCCATGTTCA+AGG | + | chr3.3:33221970-33221989 | MS.gene89383:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 33221961 | 33224367 | 33221961 | ID=MS.gene89383 |
| chr3.3 | mRNA | 33221961 | 33224367 | 33221961 | ID=MS.gene89383.t1;Parent=MS.gene89383 |
| chr3.3 | exon | 33221961 | 33222040 | 33221961 | ID=MS.gene89383.t1.exon1;Parent=MS.gene89383.t1 |
| chr3.3 | CDS | 33221961 | 33222040 | 33221961 | ID=cds.MS.gene89383.t1;Parent=MS.gene89383.t1 |
| chr3.3 | exon | 33222595 | 33222675 | 33222595 | ID=MS.gene89383.t1.exon2;Parent=MS.gene89383.t1 |
| chr3.3 | CDS | 33222595 | 33222675 | 33222595 | ID=cds.MS.gene89383.t1;Parent=MS.gene89383.t1 |
| chr3.3 | exon | 33222766 | 33222942 | 33222766 | ID=MS.gene89383.t1.exon3;Parent=MS.gene89383.t1 |
| chr3.3 | CDS | 33222766 | 33222942 | 33222766 | ID=cds.MS.gene89383.t1;Parent=MS.gene89383.t1 |
| chr3.3 | exon | 33223021 | 33223125 | 33223021 | ID=MS.gene89383.t1.exon4;Parent=MS.gene89383.t1 |
| chr3.3 | CDS | 33223021 | 33223125 | 33223021 | ID=cds.MS.gene89383.t1;Parent=MS.gene89383.t1 |
| chr3.3 | exon | 33223220 | 33223283 | 33223220 | ID=MS.gene89383.t1.exon5;Parent=MS.gene89383.t1 |
| chr3.3 | CDS | 33223220 | 33223283 | 33223220 | ID=cds.MS.gene89383.t1;Parent=MS.gene89383.t1 |
| chr3.3 | exon | 33224079 | 33224174 | 33224079 | ID=MS.gene89383.t1.exon6;Parent=MS.gene89383.t1 |
| chr3.3 | CDS | 33224079 | 33224174 | 33224079 | ID=cds.MS.gene89383.t1;Parent=MS.gene89383.t1 |
| chr3.3 | exon | 33224275 | 33224367 | 33224275 | ID=MS.gene89383.t1.exon7;Parent=MS.gene89383.t1 |
| chr3.3 | CDS | 33224275 | 33224367 | 33224275 | ID=cds.MS.gene89383.t1;Parent=MS.gene89383.t1 |
| Gene Sequence |
| Protein sequence |
