AlfalfaGEDB | MS.gene89493

M. sativa cultivar XinJiangDaYe / MS.gene89493

KEGG: K09527
GO: GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009987 GO:0019725 GO:0042592 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008
PFAM: PF00085.23 PF00515.31 PF13174.9 PF13414.9 PF13432.9 PF14559.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89493.t1	XP_003615062.1	92.8	682	43	2	1	682	1	676	0.00E+00	1138.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89493.t1	Q9MAH1	41.1	474	270	5	216	681	226	698	3.0e-93	344.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89493.t1	G7KAB8	92.8	682	43	2	1	682	1	676	0.0e+00	1138.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049281	MS.gene89493	0.801832	7.48E-49	-1.69E-46
MS.gene052707	MS.gene89493	0.803757	2.99E-49	-1.69E-46
MS.gene055251	MS.gene89493	0.817062	4.01E-52	-1.69E-46
MS.gene055549	MS.gene89493	0.807337	5.31E-50	-1.69E-46
MS.gene055550	MS.gene89493	0.804437	2.16E-49	-1.69E-46
MS.gene055942	MS.gene89493	0.830781	2.42E-55	-1.69E-46
MS.gene056761	MS.gene89493	0.813769	2.16E-51	-1.69E-46
MS.gene059562	MS.gene89493	0.827245	1.74E-54	-1.69E-46
MS.gene059770	MS.gene89493	0.811825	5.77E-51	-1.69E-46
MS.gene060076	MS.gene89493	0.808337	3.26E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89493.t1	MTR_5g063200	94.868	682	29	2	1	682	1	676	0.0	1303
MS.gene89493.t1	MTR_3g074230	66.281	691	189	10	1	682	1	656	0.0	862
MS.gene89493.t1	MTR_3g074230	65.109	642	180	10	1	633	1	607	0.0	779
MS.gene89493.t1	MTR_2g078020	45.397	478	249	4	215	681	219	695	4.84e-140	426
MS.gene89493.t1	MTR_3g087480	57.423	357	151	1	215	570	220	576	1.66e-139	421
MS.gene89493.t1	MTR_2g078020	45.000	400	210	3	215	605	219	617	1.15e-114	358
MS.gene89493.t1	MTR_7g090940	26.471	374	219	10	224	545	663	1032	2.11e-16	84.3
MS.gene89493.t1	MTR_4g076240	25.000	372	221	12	224	540	533	901	2.08e-15	80.9
MS.gene89493.t1	MTR_1g030300	39.326	89	54	0	218	306	182	270	5.04e-13	72.4
MS.gene89493.t1	MTR_7g059150	35.398	113	66	1	453	558	98	210	6.08e-13	70.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89493.t1	AT5G65160	51.629	399	180	3	184	572	197	592	3.78e-133	405
MS.gene89493.t1	AT1G78120	43.322	584	268	13	4	583	3	527	3.39e-129	392
MS.gene89493.t1	AT1G53300	43.552	473	258	5	218	682	228	699	4.78e-125	387
MS.gene89493.t1	AT2G42580	42.540	496	275	5	194	680	195	689	1.50e-124	385
MS.gene89493.t1	AT3G14950	42.675	471	263	4	217	680	258	728	4.59e-121	378
MS.gene89493.t1	AT5G10090	51.743	373	176	2	201	572	224	593	2.67e-120	372
MS.gene89493.t1	AT3G58620	39.960	498	282	7	194	680	189	680	9.35e-112	352
MS.gene89493.t1	AT1G78120	42.402	533	242	13	4	531	3	475	2.21e-110	342
MS.gene89493.t1	AT3G58620	39.246	451	257	7	194	633	189	633	5.43e-95	307
MS.gene89493.t1	AT2G41520	28.346	381	217	12	218	545	554	931	8.33e-24	107

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Find 109 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAAAAGCAACAAGGT+GGG	0.655464	5.4:-49311262	MS.gene89493:CDS
AAAGCCAGGGGATGAAGAAG+TGG	0.612053	5.4:-49308239	MS.gene89493:CDS
AAATCACCTTAAGAAATGCA+TGG	0.607286	5.4:-49309756	MS.gene89493:CDS
AACAAGGTGGGAAATGAATT+TGG	0.258675	5.4:-49311250	MS.gene89493:CDS
AACACACAAGCAAGTGTCGA+TGG	0.612307	5.4:-49307964	MS.gene89493:CDS
AACAGATGGGAATCTCTTGC+TGG	0.367982	5.4:+49307929	None:intergenic
AAGAGTTGAACTAACACCAG+AGG	0.642924	5.4:+49311000	None:intergenic
AAGCACAGAGTCGACATTTG+AGG	0.466415	5.4:+49309802	None:intergenic
AAGCGTTGCTGAAGCTCGTA+AGG	0.526613	5.4:-49309502	MS.gene89493:CDS
AAGCTAGGAAATACAATGAA+TGG	0.466040	5.4:-49309733	MS.gene89493:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCACCTTAAGAAATGCA+TGG	-	chr5.4:49308992-49309011	MS.gene89493:intron	30.0%
AACAACTCTAATCAGCTTAT+TGG	+	chr5.4:49309193-49309212	None:intergenic	30.0%
AAGCTAGGAAATACAATGAA+TGG	-	chr5.4:49309015-49309034	MS.gene89493:intron	30.0%
AATGAAAACCAAAAGCAACA+AGG	-	chr5.4:49307482-49307501	MS.gene89493:CDS	30.0%
AATGGAAGAAAAGTGGTTAT+GGG	-	chr5.4:49308035-49308054	MS.gene89493:intron	30.0%
ACACTAGATTCAATGAAACT+CGG	-	chr5.4:49307682-49307701	MS.gene89493:intron	30.0%
ATTCATGTTATAGCAAAGCA+AGG	-	chr5.4:49310046-49310065	MS.gene89493:intron	30.0%
CAAATGCGGTTCAAATATTA+AGG	+	chr5.4:49309645-49309664	None:intergenic	30.0%
CAAATGCTGTTAAATAGGTA+TGG	-	chr5.4:49310736-49310755	MS.gene89493:CDS	30.0%
CAAGATAAGTCTCAAAAAAG+GGG	+	chr5.4:49309505-49309524	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	49307477	49311293	49307477	ID=MS.gene89493
chr5.4	mRNA	49307477	49311293	49307477	ID=MS.gene89493.t1;Parent=MS.gene89493
chr5.4	exon	49310404	49311293	49310404	ID=MS.gene89493.t1.exon1;Parent=MS.gene89493.t1
chr5.4	CDS	49310404	49311293	49310404	ID=cds.MS.gene89493.t1;Parent=MS.gene89493.t1
chr5.4	exon	49309673	49309865	49309673	ID=MS.gene89493.t1.exon2;Parent=MS.gene89493.t1
chr5.4	CDS	49309673	49309865	49309673	ID=cds.MS.gene89493.t1;Parent=MS.gene89493.t1
chr5.4	exon	49309371	49309543	49309371	ID=MS.gene89493.t1.exon3;Parent=MS.gene89493.t1
chr5.4	CDS	49309371	49309543	49309371	ID=cds.MS.gene89493.t1;Parent=MS.gene89493.t1
chr5.4	exon	49308675	49309008	49308675	ID=MS.gene89493.t1.exon4;Parent=MS.gene89493.t1
chr5.4	CDS	49308675	49309008	49308675	ID=cds.MS.gene89493.t1;Parent=MS.gene89493.t1
chr5.4	exon	49308107	49308311	49308107	ID=MS.gene89493.t1.exon5;Parent=MS.gene89493.t1
chr5.4	CDS	49308107	49308311	49308107	ID=cds.MS.gene89493.t1;Parent=MS.gene89493.t1
chr5.4	exon	49307917	49308017	49307917	ID=MS.gene89493.t1.exon6;Parent=MS.gene89493.t1
chr5.4	CDS	49307917	49308017	49307917	ID=cds.MS.gene89493.t1;Parent=MS.gene89493.t1
chr5.4	exon	49307477	49307629	49307477	ID=MS.gene89493.t1.exon7;Parent=MS.gene89493.t1
chr5.4	CDS	49307477	49307629	49307477	ID=cds.MS.gene89493.t1;Parent=MS.gene89493.t1

Gene Sequence

>MS.gene89493

ATGGCAATGAAAACCAAAAGCAACAAGGTGGGAAATGAATTTGGTTGTGGTTTCATGGAGAGAATTTTCAATCTCAAAAGTCCTAGGCTAAGAAACTCATTAGTTCATTCCCTACCAATGAAAACTAACAACATTGATCATGTCAAAAATGAAGCAAAGTTGTTTCCAAATAAAGAACCAAAAGTTCCACAAAAAATCTCCAACAACACTAGATTCAATGAAACTCGGAAGCGTAGTTCAGATACTACTGCAAGAAGCTCAACATCATCATCCTCTGGTGTTAGTTCAACTCTTAAAAGGGTTGAACAAAACCATAATACGGATGATGATGTCAAGCTTCAAATTGAATCAGCGCGAAATTCTCTACAACTTGCTAGAATAAGCACTATTCGCACGCGTGACAACGAGAGTAACAACAAGTCCGTAACCAAAGACTTTTCTCCCTTGAAACTCACTGGAAACTTGCTTGTGAATAACACTCCAAGAAGAAAGAGTGTTGATAGTTTACCTAAGCATTTAGAGTTAAACTCAGTTTCAAGTTTTTACAATGGTAATAATAATGGAAGAAAAGTGGTTATGGGGAATATTATGAGGAAGAATAGTAATGAACTTGCACAGTTTCTAAGTCAAAGACACAATATTGTTGAACCTGAAGTGTTGAAATCAATGGGAAATGAAGCATACAAAAAGGGTAATTTTGAAGAGGCTTTGGGTTTGTATGACAAAGCAATTGCTATTGATTCAAATAAGGCAACTTATCATTGCAATAAGAGTGCTGCTTTGATTGGATTAGGAAGGTTTCAAGAAGCTATTATTGTGTGTGAGGAATCTATTCGGTTGGATCCTTCTTATAACAGAGCTCACAATCGTTTGGCTACAATATATTTCAGGTACACAGTCATAATAATCACGTGGGCTTCATTTAATTCATTAAGGTTCTGATTGGATAAGTGATTATCATATAATTGCTTATGTGTAAGTTATTTCTATAACAAGAGACAAGGCCGAGTCAAATTGTTTTATAAGCTATAAGATGTTTTCTTAAGTTAGTTTGGAGAGCTTATGGAAATAGGCTGAAAACAACTTATTGACATGTCATAAACTATTTCCATAAGCTCTTCCAAATGTTTATGCTAGTAGATAAAATTGAATAAGCCAATCCAAACAAGCTCAAGTACCAAAGATTTAAATTGAGGTCATGTTGGGATCCTCAATTCGCGCTCAAATGTGCCCAATGCGACCTCACTGGCGGTTATGAGACATATAAATCTTTGTTAAATCTTTGATGTCGCAGCTCAAATTCGCAGACATTTTTTAAAATATATTAAAGGACTAGCAGAGAAAACATCGTGATTTACTTTGAATATGACATTGTGTTTGTTTAATTTATTATTACTTTTGCTTATTGAATTGCAAATTTTAATGCAGATTAGGAGAAGTAGAAAAAGCACTGGATTGCAACCGATCAACCTCAAATGTCGACTCTGTGCTTGCTTTTCAAGCTCAGGCTCTACAAAATCACCTTAAGAAATGCATGGAAGCTAGGAAATACAATGAATGGAGTGTTGTACTAAAGGAAACACACTCTGCATTATCCTTAGGTGCTGATTCAGCTCCACAGGTTAGTTCATTTGTCAACCATATTAGATTTTTACAAAAAACAATTTTATACTTAACATTTTCTGTAGATCTTAACAAAATTTATCCTATAAACCAATAAGCTGATTAGAGTTGTTTGTATTTGTGGTAGATCTATGCTTTACAAACTGAAGCGTTGCTGAAGCTCGTAAGGTACCAAGAGGCATATGCTGTGTATGACGACATGCCAAAATTTTCAGTTGATTGGTGTAACAAGATATTTGGTATGGCTACTAGTGCTTACCTGTTGATGATAGGCTCAATGGTTTACTTAGCATCCGGCAGGTTTGTGAAAATAAATCATTTTTTGACAATTACTTCAATCATGATTTATGTATATTTCGCCATTGGCATGCAATATGCTGGTAAATTTGCAGCCCTTTAAGTCCCCTTTTTTGAGACTTATCTTGTTGAGAAGAAAACTTAGAGTTAATCTGATACTATTAAACAGCTTAGAGGACCGCAAAATGTATTTTGCCTAATTCTGTAAAATTGTTTCAAATTGTAGACCACATCTTGTGATGTGGCCTTAATATTTGAACCGCATTTGCATCACAACGGTGTTTTTGCAAATCATCGCAACTGATACATTTTCCGAGTCTAGTTTGGAATGAACTCAAGTAAAATTGAACTTTGTTTGTTTATAGGTTTGAGGATGCTGTGAGAACAGCTCAGCAAGCAGCTAGAGTTGATCCAAGCAACAGAGAGGTAAATGCAGTGTTAAGGAGAGCCAAAGCAGTAACATCAGCTAGAATGAGTGGAAACTTACTCTTCAAGGCATCAAAATTCATGGAAGCATGTGCAGTATACAATGAAGGACTAGATCATGATCCACACAACTCAGTTCTGTTATGTAACAGAGCAGCATGTCGTTCTAAGCTAGGGCAATATGAAAAAGCAATCGAAGACTGTGATGCTGCACTTATGCTTAATTCATGTTATAGCAAAGCAAGGCTAAGGAGGGCATATTGTAATGCCAAGGTACTTTAAATGTTTGATTTATGACACAAGACATGACACTAACAGTGACTCGACACTATTAATAATTTGAGAAAATAAAAATGTTCGAATGTAACCACATGTGCCAGTGTTGTGTCAGTGTCCTACACTGAACACTAACACATGTTGAACATTAACACGTGTCAGACACCAAACACGCCTTCAAACGTGGAGAATCACAATCAAATATGGCTGATGTGGTCCCAACGCAGTCACATTACGGTCAGAGAGACATCAAAACCTTGATGTAGCGGTTCAGATTGCAGCCGATGACCTTTTTTTCTAAAACTCTTCGTACTTATGTACGCTTAGTAACTGTATCGCTATATTATTTTGTTCATGTAGTTGGAACGATGGGAAGTTGCCATTCAAGACTATGAAATGTTGATAAGAGAAAAGCCAGGGGATGAAGAAGTGGCAAGGGCTTTGTTTGAGGCTCGGCTCCAACTCAAGATGCTACGTGGTGAAGATATTAAGGATTTAAAATTTGGTTCAAATTTAGTTTGCATTTCAAGTAACGATCGTTTCAGACATTACGTAACCTCACCTGGTAAGGCACAATATAGTTTTTTCTCTTATACAATACATTACACATGAGTATTACAAATGAACTTACCGATTTCAAATGCTGTTAAATAGGTATGGCTGTTGTGCTCTTCAGTAACAAGGGAACACACAAGCAAGTGTCGATGGTGCTGGAGGAAACCAGCAAGAGATTCCCATCTGTTAATTTCCTCAAGGTTGGTTTATTTTTAAGAGTTTAATTGGTATGCACAGTCGGTGTAAAAATATTTTACAGATGCATTCGATCATATTTCACCATGTAGAAGATAATTGTGCAGATGTTTTAGGAACTAATACAACAATGATATAATGGTGAGATATGATTAGACGCACGTGTGAATCGTTTCGGTGAGATATGATACCAAATCATATCTGTTTCTCAAGTTAAAAATCATAAAAGTTATTTCAATATCGAAACTAGGCCATTGTTTCTTACTTATATAACTGAACTACGACTATTCAGGTCGAGATTGAAGACCATCCCTACTTGGCAAAATCAGAAGGTGTAAGCTCATTCCCAGCCTTCAAAATATACAAAAATGGATCAAGAGTTAAAGAGATTTCAGGCAACAACCACGAGTTTTTAGAAAAATCGGTTAAATTCTATAGTAGCTGA

Protein sequence

>MS.gene89493.t1

MAMKTKSNKVGNEFGCGFMERIFNLKSPRLRNSLVHSLPMKTNNIDHVKNEAKLFPNKEPKVPQKISNNTRFNETRKRSSDTTARSSTSSSSGVSSTLKRVEQNHNTDDDVKLQIESARNSLQLARISTIRTRDNESNNKSVTKDFSPLKLTGNLLVNNTPRRKSVDSLPKHLELNSVSSFYNGNNNGRKVVMGNIMRKNSNELAQFLSQRHNIVEPEVLKSMGNEAYKKGNFEEALGLYDKAIAIDSNKATYHCNKSAALIGLGRFQEAIIVCEESIRLDPSYNRAHNRLATIYFRLGEVEKALDCNRSTSNVDSVLAFQAQALQNHLKKCMEARKYNEWSVVLKETHSALSLGADSAPQIYALQTEALLKLVRYQEAYAVYDDMPKFSVDWCNKIFGMATSAYLLMIGSMVYLASGRFEDAVRTAQQAARVDPSNREVNAVLRRAKAVTSARMSGNLLFKASKFMEACAVYNEGLDHDPHNSVLLCNRAACRSKLGQYEKAIEDCDAALMLNSCYSKARLRRAYCNAKLERWEVAIQDYEMLIREKPGDEEVARALFEARLQLKMLRGEDIKDLKFGSNLVCISSNDRFRHYVTSPGMAVVLFSNKGTHKQVSMVLEETSKRFPSVNFLKVEIEDHPYLAKSEGVSSFPAFKIYKNGSRVKEISGNNHEFLEKSVKFYSS