Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89493.t1 | XP_003615062.1 | 92.8 | 682 | 43 | 2 | 1 | 682 | 1 | 676 | 0.00E+00 | 1138.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89493.t1 | Q9MAH1 | 41.1 | 474 | 270 | 5 | 216 | 681 | 226 | 698 | 3.0e-93 | 344.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89493.t1 | G7KAB8 | 92.8 | 682 | 43 | 2 | 1 | 682 | 1 | 676 | 0.0e+00 | 1138.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049281 | MS.gene89493 | 0.801832 | 7.48E-49 | -1.69E-46 |
| MS.gene052707 | MS.gene89493 | 0.803757 | 2.99E-49 | -1.69E-46 |
| MS.gene055251 | MS.gene89493 | 0.817062 | 4.01E-52 | -1.69E-46 |
| MS.gene055549 | MS.gene89493 | 0.807337 | 5.31E-50 | -1.69E-46 |
| MS.gene055550 | MS.gene89493 | 0.804437 | 2.16E-49 | -1.69E-46 |
| MS.gene055942 | MS.gene89493 | 0.830781 | 2.42E-55 | -1.69E-46 |
| MS.gene056761 | MS.gene89493 | 0.813769 | 2.16E-51 | -1.69E-46 |
| MS.gene059562 | MS.gene89493 | 0.827245 | 1.74E-54 | -1.69E-46 |
| MS.gene059770 | MS.gene89493 | 0.811825 | 5.77E-51 | -1.69E-46 |
| MS.gene060076 | MS.gene89493 | 0.808337 | 3.26E-50 | -1.69E-46 |
| MS.gene061044 | MS.gene89493 | 0.807813 | 4.21E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89493.t1 | MTR_5g063200 | 94.868 | 682 | 29 | 2 | 1 | 682 | 1 | 676 | 0.0 | 1303 |
| MS.gene89493.t1 | MTR_3g074230 | 66.281 | 691 | 189 | 10 | 1 | 682 | 1 | 656 | 0.0 | 862 |
| MS.gene89493.t1 | MTR_3g074230 | 65.109 | 642 | 180 | 10 | 1 | 633 | 1 | 607 | 0.0 | 779 |
| MS.gene89493.t1 | MTR_2g078020 | 45.397 | 478 | 249 | 4 | 215 | 681 | 219 | 695 | 4.84e-140 | 426 |
| MS.gene89493.t1 | MTR_3g087480 | 57.423 | 357 | 151 | 1 | 215 | 570 | 220 | 576 | 1.66e-139 | 421 |
| MS.gene89493.t1 | MTR_2g078020 | 45.000 | 400 | 210 | 3 | 215 | 605 | 219 | 617 | 1.15e-114 | 358 |
| MS.gene89493.t1 | MTR_7g090940 | 26.471 | 374 | 219 | 10 | 224 | 545 | 663 | 1032 | 2.11e-16 | 84.3 |
| MS.gene89493.t1 | MTR_4g076240 | 25.000 | 372 | 221 | 12 | 224 | 540 | 533 | 901 | 2.08e-15 | 80.9 |
| MS.gene89493.t1 | MTR_1g030300 | 39.326 | 89 | 54 | 0 | 218 | 306 | 182 | 270 | 5.04e-13 | 72.4 |
| MS.gene89493.t1 | MTR_7g059150 | 35.398 | 113 | 66 | 1 | 453 | 558 | 98 | 210 | 6.08e-13 | 70.1 |
| MS.gene89493.t1 | MTR_2g090135 | 33.628 | 113 | 68 | 1 | 453 | 558 | 101 | 213 | 1.07e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89493.t1 | AT5G65160 | 51.629 | 399 | 180 | 3 | 184 | 572 | 197 | 592 | 3.78e-133 | 405 |
| MS.gene89493.t1 | AT1G78120 | 43.322 | 584 | 268 | 13 | 4 | 583 | 3 | 527 | 3.39e-129 | 392 |
| MS.gene89493.t1 | AT1G53300 | 43.552 | 473 | 258 | 5 | 218 | 682 | 228 | 699 | 4.78e-125 | 387 |
| MS.gene89493.t1 | AT2G42580 | 42.540 | 496 | 275 | 5 | 194 | 680 | 195 | 689 | 1.50e-124 | 385 |
| MS.gene89493.t1 | AT3G14950 | 42.675 | 471 | 263 | 4 | 217 | 680 | 258 | 728 | 4.59e-121 | 378 |
| MS.gene89493.t1 | AT5G10090 | 51.743 | 373 | 176 | 2 | 201 | 572 | 224 | 593 | 2.67e-120 | 372 |
| MS.gene89493.t1 | AT3G58620 | 39.960 | 498 | 282 | 7 | 194 | 680 | 189 | 680 | 9.35e-112 | 352 |
| MS.gene89493.t1 | AT1G78120 | 42.402 | 533 | 242 | 13 | 4 | 531 | 3 | 475 | 2.21e-110 | 342 |
| MS.gene89493.t1 | AT3G58620 | 39.246 | 451 | 257 | 7 | 194 | 633 | 189 | 633 | 5.43e-95 | 307 |
| MS.gene89493.t1 | AT2G41520 | 28.346 | 381 | 217 | 12 | 218 | 545 | 554 | 931 | 8.33e-24 | 107 |
| MS.gene89493.t1 | AT2G41520 | 28.346 | 381 | 217 | 12 | 218 | 545 | 454 | 831 | 1.30e-23 | 107 |
| MS.gene89493.t1 | AT5G12430 | 26.525 | 377 | 209 | 14 | 224 | 545 | 615 | 978 | 1.24e-20 | 97.8 |
| MS.gene89493.t1 | AT2G41520 | 27.100 | 369 | 206 | 11 | 218 | 545 | 554 | 900 | 2.22e-19 | 93.6 |
| MS.gene89493.t1 | AT1G04190 | 30.303 | 132 | 91 | 1 | 447 | 577 | 12 | 143 | 3.20e-13 | 72.0 |
| MS.gene89493.t1 | AT4G08320 | 37.079 | 89 | 56 | 0 | 218 | 306 | 176 | 264 | 2.31e-11 | 67.0 |
| MS.gene89493.t1 | AT4G08320 | 37.079 | 89 | 56 | 0 | 218 | 306 | 176 | 264 | 2.56e-11 | 66.6 |
Find 109 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATATTAAGGATTTAAAATT+TGG | 0.140223 | 5.4:-49308166 | MS.gene89493:CDS |
| CACCAATCAACTGAAAATTT+TGG | 0.179108 | 5.4:+49309446 | None:intergenic |
| GTGTTAGTTCAACTCTTAAA+AGG | 0.198175 | 5.4:-49310994 | MS.gene89493:CDS |
| CTATCAACACTCTTTCTTCT+TGG | 0.203952 | 5.4:+49310791 | None:intergenic |
| ATTTCCCACCTTGTTGCTTT+TGG | 0.222662 | 5.4:+49311258 | None:intergenic |
| TGACATCATCATCCGTATTA+TGG | 0.253217 | 5.4:+49310960 | None:intergenic |
| GATTGGTGTAACAAGATATT+TGG | 0.257082 | 5.4:-49309431 | MS.gene89493:CDS |
| AACAAGGTGGGAAATGAATT+TGG | 0.258675 | 5.4:-49311250 | MS.gene89493:CDS |
| CCCATTGATTTCAACACTTC+AGG | 0.263680 | 5.4:+49310623 | None:intergenic |
| GTTTGGCTACAATATATTTC+AGG | 0.265397 | 5.4:-49310403 | MS.gene89493:intron |
| GGGAAATGAAGCATACAAAA+AGG | 0.283295 | 5.4:-49310603 | MS.gene89493:CDS |
| AATTGCTATTGATTCAAATA+AGG | 0.311942 | 5.4:-49310543 | MS.gene89493:CDS |
| TCAAGAGTTAAAGAGATTTC+AGG | 0.320539 | 5.4:-49307526 | MS.gene89493:CDS |
| GCTACGTGGTGAAGATATTA+AGG | 0.330275 | 5.4:-49308179 | MS.gene89493:CDS |
| TCTAGCTGATGTTACTGCTT+TGG | 0.346144 | 5.4:+49308903 | None:intergenic |
| TAATGGAAGAAAAGTGGTTA+TGG | 0.351291 | 5.4:-49310714 | MS.gene89493:CDS |
| TAGCTTCCATGCATTTCTTA+AGG | 0.354835 | 5.4:+49309750 | None:intergenic |
| CTTGCCACTTCTTCATCCCC+TGG | 0.357092 | 5.4:+49308235 | None:intergenic |
| TGAATTTGGTTGTGGTTTCA+TGG | 0.358450 | 5.4:-49311236 | MS.gene89493:CDS |
| AACAGATGGGAATCTCTTGC+TGG | 0.367982 | 5.4:+49307929 | None:intergenic |
| CTTCAAGGCATCAAAATTCA+TGG | 0.378167 | 5.4:-49308863 | MS.gene89493:CDS |
| TTCATTGAATCTAGTGTTGT+TGG | 0.378212 | 5.4:+49311072 | None:intergenic |
| AGTGCTGCTTTGATTGGATT+AGG | 0.390295 | 5.4:-49310500 | MS.gene89493:CDS |
| CCTGTTGATGATAGGCTCAA+TGG | 0.390525 | 5.4:-49309390 | MS.gene89493:CDS |
| GCATTTACCTCTCTGTTGCT+TGG | 0.397607 | 5.4:+49308940 | None:intergenic |
| TTTCAAGGGAGAAAAGTCTT+TGG | 0.402556 | 5.4:+49310844 | None:intergenic |
| CAACATTTCATAGTCTTGAA+TGG | 0.407126 | 5.4:+49308270 | None:intergenic |
| AATGGAAGAAAAGTGGTTAT+GGG | 0.407604 | 5.4:-49310713 | MS.gene89493:CDS |
| AATAAGAGTGCTGCTTTGAT+TGG | 0.422910 | 5.4:-49310506 | MS.gene89493:CDS |
| TAACAGAGCTCACAATCGTT+TGG | 0.432445 | 5.4:-49310420 | MS.gene89493:CDS |
| AGTGCTTACCTGTTGATGAT+AGG | 0.433153 | 5.4:-49309398 | MS.gene89493:CDS |
| CAAGTTTCCAGTGAGTTTCA+AGG | 0.440774 | 5.4:+49310829 | None:intergenic |
| AGTGGCAAGGGCTTTGTTTG+AGG | 0.452462 | 5.4:-49308221 | MS.gene89493:CDS |
| GGGAGAAAAGTCTTTGGTTA+CGG | 0.459219 | 5.4:+49310850 | None:intergenic |
| AAGCTAGGAAATACAATGAA+TGG | 0.466040 | 5.4:-49309733 | MS.gene89493:CDS |
| AAGCACAGAGTCGACATTTG+AGG | 0.466415 | 5.4:+49309802 | None:intergenic |
| CAAGGGCTTTGTTTGAGGCT+CGG | 0.466961 | 5.4:-49308216 | MS.gene89493:CDS |
| TTTGTTTGTTTATAGGTTTG+AGG | 0.469251 | 5.4:-49309001 | MS.gene89493:intron |
| GAGTGGAAACTTACTCTTCA+AGG | 0.469684 | 5.4:-49308878 | MS.gene89493:CDS |
| AAGTTTCCAGTGAGTTTCAA+GGG | 0.474677 | 5.4:+49310830 | None:intergenic |
| GCAGCATGTCGTTCTAAGCT+AGG | 0.476776 | 5.4:-49308772 | MS.gene89493:CDS |
| GAGTTTAACTCTAAATGCTT+AGG | 0.478109 | 5.4:+49310764 | None:intergenic |
| GAGAGGTAAATGCAGTGTTA+AGG | 0.483205 | 5.4:-49308930 | MS.gene89493:CDS |
| TTAAGAAATGCATGGAAGCT+AGG | 0.484095 | 5.4:-49309748 | MS.gene89493:CDS |
| TGTTAGTTCAACTCTTAAAA+GGG | 0.486922 | 5.4:-49310993 | MS.gene89493:CDS |
| CAAGCAAGTGTCGATGGTGC+TGG | 0.487932 | 5.4:-49307958 | MS.gene89493:CDS |
| CCATTGAGCCTATCATCAAC+AGG | 0.491261 | 5.4:+49309390 | None:intergenic |
| GATTGAAGACCATCCCTACT+TGG | 0.492258 | 5.4:-49307602 | MS.gene89493:CDS |
| ACACACTCTGCATTATCCTT+AGG | 0.495220 | 5.4:-49309692 | MS.gene89493:CDS |
| AGCTCAACATCATCATCCTC+TGG | 0.497422 | 5.4:-49311016 | MS.gene89493:CDS |
| ACCTGAAGTGTTGAAATCAA+TGG | 0.500536 | 5.4:-49310624 | MS.gene89493:CDS |
| TTGTGTGTGAGGAATCTATT+CGG | 0.501076 | 5.4:-49310457 | MS.gene89493:CDS |
| GGTTGAACAAAACCATAATA+CGG | 0.506340 | 5.4:-49310972 | MS.gene89493:CDS |
| TGAATGGAGTGTTGTACTAA+AGG | 0.509141 | 5.4:-49309717 | MS.gene89493:CDS |
| CCTGAAGTGTTGAAATCAAT+GGG | 0.509444 | 5.4:-49310623 | MS.gene89493:CDS |
| GTGTAACAAGATATTTGGTA+TGG | 0.512670 | 5.4:-49309426 | MS.gene89493:CDS |
| AGGTGCTGATTCAGCTCCAC+AGG | 0.515494 | 5.4:-49309672 | MS.gene89493:intron |
| CATACACAGCATATGCCTCT+TGG | 0.516784 | 5.4:+49309477 | None:intergenic |
| CTGCTTTGATTGGATTAGGA+AGG | 0.522810 | 5.4:-49310496 | MS.gene89493:CDS |
| AGACATTACGTAACCTCACC+TGG | 0.525280 | 5.4:-49308106 | MS.gene89493:intron |
| TCAATGGTTTACTTAGCATC+CGG | 0.525397 | 5.4:-49309374 | MS.gene89493:CDS |
| AAGCGTTGCTGAAGCTCGTA+AGG | 0.526613 | 5.4:-49309502 | MS.gene89493:CDS |
| TGGAGCTGAATCAGCACCTA+AGG | 0.532251 | 5.4:+49309676 | None:intergenic |
| TGGTTATGGGGAATATTATG+AGG | 0.534032 | 5.4:-49310700 | MS.gene89493:CDS |
| GTGGGAAATGAATTTGGTTG+TGG | 0.539824 | 5.4:-49311244 | MS.gene89493:CDS |
| CCCATCTGTTAATTTCCTCA+AGG | 0.541662 | 5.4:-49307916 | MS.gene89493:intron |
| AGTCGACATTTGAGGTTGAT+CGG | 0.541998 | 5.4:+49309810 | None:intergenic |
| GTTCATGTAGTTGGAACGAT+GGG | 0.548608 | 5.4:-49308299 | MS.gene89493:intron |
| TAATAATAATGGAAGAAAAG+TGG | 0.551939 | 5.4:-49310720 | MS.gene89493:CDS |
| TGGTTTACTTAGCATCCGGC+AGG | 0.558032 | 5.4:-49309370 | MS.gene89493:intron |
| TTGTGAGCTCTGTTATAAGA+AGG | 0.559856 | 5.4:+49310428 | None:intergenic |
| GTAACATCAGCTAGAATGAG+TGG | 0.563164 | 5.4:-49308895 | MS.gene89493:CDS |
| CAGCATGTCGTTCTAAGCTA+GGG | 0.566141 | 5.4:-49308771 | MS.gene89493:CDS |
| ATAGCAAAGCAAGGCTAAGG+AGG | 0.574323 | 5.4:-49308693 | MS.gene89493:CDS |
| CACCACGTAGCATCTTGAGT+TGG | 0.574730 | 5.4:+49308191 | None:intergenic |
| GTTATAGCAAAGCAAGGCTA+AGG | 0.577740 | 5.4:-49308696 | MS.gene89493:CDS |
| ATTCATGTTATAGCAAAGCA+AGG | 0.578425 | 5.4:-49308702 | MS.gene89493:CDS |
| TGTTGTGCTCTTCAGTAACA+AGG | 0.578964 | 5.4:-49307988 | MS.gene89493:CDS |
| ACCTTGAGGAAATTAACAGA+TGG | 0.580115 | 5.4:+49307915 | None:intergenic |
| ATGGAAGAAAAGTGGTTATG+GGG | 0.585396 | 5.4:-49310712 | MS.gene89493:CDS |
| GCATGTGCAGTATACAATGA+AGG | 0.586516 | 5.4:-49308838 | MS.gene89493:CDS |
| ACTAATGAGTTTCTTAGCCT+AGG | 0.586693 | 5.4:+49311190 | None:intergenic |
| AGAAGCTATTATTGTGTGTG+AGG | 0.588126 | 5.4:-49310468 | MS.gene89493:CDS |
| CCCTACTTGGCAAAATCAGA+AGG | 0.591318 | 5.4:-49307589 | MS.gene89493:CDS |
| CCTTGAGGAAATTAACAGAT+GGG | 0.594305 | 5.4:+49307916 | None:intergenic |
| CATAACAGAACTGAGTTGTG+TGG | 0.597143 | 5.4:+49308802 | None:intergenic |
| CAGGGGATGAAGAAGTGGCA+AGG | 0.598230 | 5.4:-49308234 | MS.gene89493:CDS |
| TGTTCATGTAGTTGGAACGA+TGG | 0.598462 | 5.4:-49308300 | MS.gene89493:intron |
| GTGTGAGGAATCTATTCGGT+TGG | 0.599582 | 5.4:-49310453 | MS.gene89493:CDS |
| TGTTGATAAGAGAAAAGCCA+GGG | 0.605338 | 5.4:-49308252 | MS.gene89493:CDS |
| AAATCACCTTAAGAAATGCA+TGG | 0.607286 | 5.4:-49309756 | MS.gene89493:CDS |
| AGGGGATGAAGAAGTGGCAA+GGG | 0.610194 | 5.4:-49308233 | MS.gene89493:CDS |
| AAAGCCAGGGGATGAAGAAG+TGG | 0.612053 | 5.4:-49308239 | MS.gene89493:CDS |
| AACACACAAGCAAGTGTCGA+TGG | 0.612307 | 5.4:-49307964 | MS.gene89493:CDS |
| ATGTTGATAAGAGAAAAGCC+AGG | 0.618320 | 5.4:-49308253 | MS.gene89493:CDS |
| GCAAGTGTCGATGGTGCTGG+AGG | 0.619498 | 5.4:-49307955 | MS.gene89493:CDS |
| GAGGGCATATTGTAATGCCA+AGG | 0.628743 | 5.4:-49308674 | MS.gene89493:intron |
| ATATTGTGCCTTACCAGGTG+AGG | 0.633902 | 5.4:+49308093 | None:intergenic |
| AAGAGTTGAACTAACACCAG+AGG | 0.642924 | 5.4:+49311000 | None:intergenic |
| ACACTAGATTCAATGAAACT+CGG | 0.644942 | 5.4:-49311066 | MS.gene89493:CDS |
| AAAACCAAAAGCAACAAGGT+GGG | 0.655464 | 5.4:-49311262 | MS.gene89493:CDS |
| TAGCAAAGCAAGGCTAAGGA+GGG | 0.656318 | 5.4:-49308692 | MS.gene89493:CDS |
| CTCCAACTCAAGATGCTACG+TGG | 0.662963 | 5.4:-49308193 | MS.gene89493:CDS |
| GAAAACCAAAAGCAACAAGG+TGG | 0.668719 | 5.4:-49311263 | MS.gene89493:CDS |
| AATGAAAACCAAAAGCAACA+AGG | 0.673063 | 5.4:-49311266 | MS.gene89493:CDS |
| AGTTGATCCAAGCAACAGAG+AGG | 0.695069 | 5.4:-49308947 | MS.gene89493:CDS |
| GTTGTGCTCTTCAGTAACAA+GGG | 0.695733 | 5.4:-49307987 | MS.gene89493:CDS |
| GAAGCTCGTAAGGTACCAAG+AGG | 0.704320 | 5.4:-49309492 | MS.gene89493:CDS |
| GTTGATAAGAGAAAAGCCAG+GGG | 0.744650 | 5.4:-49308251 | MS.gene89493:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTTAAGAGTTTAAT+TGG | - | chr5.4:49310859-49310878 | MS.gene89493:CDS | 10.0% |
| !!! | TTTTTTGTAAAAATCTAATA+TGG | + | chr5.4:49309118-49309137 | None:intergenic | 10.0% |
| !!! | GATATTAAGGATTTAAAATT+TGG | - | chr5.4:49310582-49310601 | MS.gene89493:CDS | 15.0% |
| !!! | TTTTACAATGGTAATAATAA+TGG | - | chr5.4:49308017-49308036 | MS.gene89493:intron | 15.0% |
| !! | CTAATACAACAATGATATAA+TGG | - | chr5.4:49310968-49310987 | MS.gene89493:CDS | 20.0% |
| !! | GTTATATAAGTAAGAAACAA+TGG | + | chr5.4:49311103-49311122 | None:intergenic | 20.0% |
| !!! | AATTGCTATTGATTCAAATA+AGG | - | chr5.4:49308205-49308224 | MS.gene89493:CDS | 20.0% |
| !!! | ATTGAACTTTGTTTGTTTAT+AGG | - | chr5.4:49309740-49309759 | MS.gene89493:CDS | 20.0% |
| !!! | TAATAATAATGGAAGAAAAG+TGG | - | chr5.4:49308028-49308047 | MS.gene89493:intron | 20.0% |
| !!! | TATTATTTTGTTCATGTAGT+TGG | - | chr5.4:49310440-49310459 | MS.gene89493:CDS | 20.0% |
| !!! | TATTTAACAGCATTTGAAAT+CGG | + | chr5.4:49310732-49310751 | None:intergenic | 20.0% |
| !!! | TCCATTTTTGTATATTTTGA+AGG | + | chr5.4:49311202-49311221 | None:intergenic | 20.0% |
| !!! | TGAAACAATTTTACAGAATT+AGG | + | chr5.4:49309595-49309614 | None:intergenic | 20.0% |
| ! | AACAAGATAAGTCTCAAAAA+AGG | + | chr5.4:49309507-49309526 | None:intergenic | 25.0% |
| ! | ACAAGATAAGTCTCAAAAAA+GGG | + | chr5.4:49309506-49309525 | None:intergenic | 25.0% |
| ! | AGTACCAAAGATTTAAATTG+AGG | - | chr5.4:49308650-49308669 | MS.gene89493:intron | 25.0% |
| ! | ATGACCTCAATTTAAATCTT+TGG | + | chr5.4:49308657-49308676 | None:intergenic | 25.0% |
| ! | ATTAGAGTTGTTTGTATTTG+TGG | - | chr5.4:49309201-49309220 | MS.gene89493:intron | 25.0% |
| ! | ATTTAAATTGAGGTCATGTT+GGG | - | chr5.4:49308660-49308679 | MS.gene89493:intron | 25.0% |
| ! | ATTTATGTATATTTCGCCAT+TGG | - | chr5.4:49309443-49309462 | MS.gene89493:CDS | 25.0% |
| ! | GATTTCAAATGCTGTTAAAT+AGG | - | chr5.4:49310731-49310750 | MS.gene89493:CDS | 25.0% |
| ! | GCCTTCAAAATATACAAAAA+TGG | - | chr5.4:49311198-49311217 | MS.gene89493:CDS | 25.0% |
| ! | GCTTATAAAACAATTTGACT+CGG | + | chr5.4:49308484-49308503 | None:intergenic | 25.0% |
| ! | TATCTACTAGCATAAACATT+TGG | + | chr5.4:49308600-49308619 | None:intergenic | 25.0% |
| ! | TGTTAGTTCAACTCTTAAAA+GGG | - | chr5.4:49307755-49307774 | MS.gene89493:intron | 25.0% |
| ! | TTAAAAATAAACCAACCTTG+AGG | + | chr5.4:49310850-49310869 | None:intergenic | 25.0% |
| ! | TTTGTTTGTTTATAGGTTTG+AGG | - | chr5.4:49309747-49309766 | MS.gene89493:CDS | 25.0% |
| !! | ATCAAACATTTAAAGTACCT+TGG | + | chr5.4:49310094-49310113 | None:intergenic | 25.0% |
| !! | ATTAGGCAAAATACATTTTG+CGG | + | chr5.4:49309578-49309597 | None:intergenic | 25.0% |
| !! | GATGTTTTCTTAAGTTAGTT+TGG | - | chr5.4:49308509-49308528 | MS.gene89493:intron | 25.0% |
| !! | GTTATTTCAATATCGAAACT+AGG | - | chr5.4:49311077-49311096 | MS.gene89493:CDS | 25.0% |
| !! | TAATTCATTAAGGTTCTGAT+TGG | - | chr5.4:49308400-49308419 | MS.gene89493:intron | 25.0% |
| !! | TATTTCTATAACAAGAGACA+AGG | - | chr5.4:49308458-49308477 | MS.gene89493:intron | 25.0% |
| !!! | ACGAAGAGTTTTAGAAAAAA+AGG | + | chr5.4:49310390-49310409 | None:intergenic | 25.0% |
| !!! | GTTTTAGAAAAAAAGGTCAT+CGG | + | chr5.4:49310383-49310402 | None:intergenic | 25.0% |
| !!! | TAATCAGCTTATTGGTTTAT+AGG | + | chr5.4:49309185-49309204 | None:intergenic | 25.0% |
| !!! | TCAATGTTGTTAGTTTTCAT+TGG | + | chr5.4:49307594-49307613 | None:intergenic | 25.0% |
| !!! | TCAGTTTCAAGTTTTTACAA+TGG | - | chr5.4:49308005-49308024 | MS.gene89493:intron | 25.0% |
| !!! | TGCAAATTTTAATGCAGATT+AGG | - | chr5.4:49308888-49308907 | MS.gene89493:CDS | 25.0% |
| !!! | TTTTGTATATTTTGAAGGCT+GGG | + | chr5.4:49311197-49311216 | None:intergenic | 25.0% |
| !!! | TTTTTGTATATTTTGAAGGC+TGG | + | chr5.4:49311198-49311217 | None:intergenic | 25.0% |
| AAATCACCTTAAGAAATGCA+TGG | - | chr5.4:49308992-49309011 | MS.gene89493:intron | 30.0% | |
| AACAACTCTAATCAGCTTAT+TGG | + | chr5.4:49309193-49309212 | None:intergenic | 30.0% | |
| AAGCTAGGAAATACAATGAA+TGG | - | chr5.4:49309015-49309034 | MS.gene89493:intron | 30.0% | |
| AATGAAAACCAAAAGCAACA+AGG | - | chr5.4:49307482-49307501 | MS.gene89493:CDS | 30.0% | |
| AATGGAAGAAAAGTGGTTAT+GGG | - | chr5.4:49308035-49308054 | MS.gene89493:intron | 30.0% | |
| ACACTAGATTCAATGAAACT+CGG | - | chr5.4:49307682-49307701 | MS.gene89493:intron | 30.0% | |
| ATTCATGTTATAGCAAAGCA+AGG | - | chr5.4:49310046-49310065 | MS.gene89493:intron | 30.0% | |
| CAAATGCGGTTCAAATATTA+AGG | + | chr5.4:49309645-49309664 | None:intergenic | 30.0% | |
| CAAATGCTGTTAAATAGGTA+TGG | - | chr5.4:49310736-49310755 | MS.gene89493:CDS | 30.0% | |
| CAAGATAAGTCTCAAAAAAG+GGG | + | chr5.4:49309505-49309524 | None:intergenic | 30.0% | |
| CTTGAGAAACAGATATGATT+TGG | + | chr5.4:49311042-49311061 | None:intergenic | 30.0% | |
| GAGTTTAACTCTAAATGCTT+AGG | + | chr5.4:49307987-49308006 | None:intergenic | 30.0% | |
| GATACTATTAAACAGCTTAG+AGG | - | chr5.4:49309551-49309570 | MS.gene89493:intron | 30.0% | |
| GATTGGTGTAACAAGATATT+TGG | - | chr5.4:49309317-49309336 | MS.gene89493:intron | 30.0% | |
| GATTTAAATTGAGGTCATGT+TGG | - | chr5.4:49308659-49308678 | MS.gene89493:intron | 30.0% | |
| GGAAATGAAGCATACAAAAA+GGG | - | chr5.4:49308146-49308165 | MS.gene89493:CDS | 30.0% | |
| GGGCTTCATTTAATTCATTA+AGG | - | chr5.4:49308390-49308409 | MS.gene89493:intron | 30.0% | |
| GGTTGAACAAAACCATAATA+CGG | - | chr5.4:49307776-49307795 | MS.gene89493:intron | 30.0% | |
| GTGTAACAAGATATTTGGTA+TGG | - | chr5.4:49309322-49309341 | MS.gene89493:intron | 30.0% | |
| GTGTTAGTTCAACTCTTAAA+AGG | - | chr5.4:49307754-49307773 | MS.gene89493:intron | 30.0% | |
| GTTTGGCTACAATATATTTC+AGG | - | chr5.4:49308345-49308364 | MS.gene89493:intron | 30.0% | |
| TAAACATTTGGAAGAGCTTA+TGG | + | chr5.4:49308588-49308607 | None:intergenic | 30.0% | |
| TAATGGAAGAAAAGTGGTTA+TGG | - | chr5.4:49308034-49308053 | MS.gene89493:intron | 30.0% | |
| TCAAGAGTTAAAGAGATTTC+AGG | - | chr5.4:49311222-49311241 | MS.gene89493:CDS | 30.0% | |
| TGGAGAATCACAATCAAATA+TGG | - | chr5.4:49310283-49310302 | MS.gene89493:intron | 30.0% | |
| TTCATTGAATCTAGTGTTGT+TGG | + | chr5.4:49307679-49307698 | None:intergenic | 30.0% | |
| ! | CAACATTTCATAGTCTTGAA+TGG | + | chr5.4:49310481-49310500 | None:intergenic | 30.0% |
| ! | CACCAATCAACTGAAAATTT+TGG | + | chr5.4:49309305-49309324 | None:intergenic | 30.0% |
| ! | GATAATTGTGCAGATGTTTT+AGG | - | chr5.4:49310943-49310962 | MS.gene89493:CDS | 30.0% |
| ! | TGCCAAAATTTTCAGTTGAT+TGG | - | chr5.4:49309300-49309319 | MS.gene89493:intron | 30.0% |
| ! | TTTTCAATCTCAAAAGTCCT+AGG | - | chr5.4:49307541-49307560 | MS.gene89493:CDS | 30.0% |
| !! | ATTTATTTTCACAAACCTGC+CGG | + | chr5.4:49309396-49309415 | None:intergenic | 30.0% |
| !! | CAAAAAGGGTAATTTTGAAG+AGG | - | chr5.4:49308160-49308179 | MS.gene89493:CDS | 30.0% |
| !! | CCACGAGTTTTTAGAAAAAT+CGG | - | chr5.4:49311251-49311270 | MS.gene89493:CDS | 30.0% |
| !!! | GAGATTTTTTGTGGAACTTT+TGG | + | chr5.4:49307657-49307676 | None:intergenic | 30.0% |
| !!! | GGAACTTTTGGTTCTTTATT+TGG | + | chr5.4:49307645-49307664 | None:intergenic | 30.0% |
| !!! | GTTGTTAGTTTTCATTGGTA+GGG | + | chr5.4:49307589-49307608 | None:intergenic | 30.0% |
| !!! | TGTTGTTAGTTTTCATTGGT+AGG | + | chr5.4:49307590-49307609 | None:intergenic | 30.0% |
| AAAACCAAAAGCAACAAGGT+GGG | - | chr5.4:49307486-49307505 | MS.gene89493:CDS | 35.0% | |
| AAACTATATTGTGCCTTACC+AGG | + | chr5.4:49310663-49310682 | None:intergenic | 35.0% | |
| AACAAGGTGGGAAATGAATT+TGG | - | chr5.4:49307498-49307517 | MS.gene89493:CDS | 35.0% | |
| AAGTTTCCAGTGAGTTTCAA+GGG | + | chr5.4:49307921-49307940 | None:intergenic | 35.0% | |
| ACAATCAAATATGGCTGATG+TGG | - | chr5.4:49310292-49310311 | MS.gene89493:intron | 35.0% | |
| ACACAGTCATAATAATCACG+TGG | - | chr5.4:49308369-49308388 | MS.gene89493:intron | 35.0% | |
| ACATCAAAACCTTGATGTAG+CGG | - | chr5.4:49310345-49310364 | MS.gene89493:intron | 35.0% | |
| ACCTTGAGGAAATTAACAGA+TGG | + | chr5.4:49310836-49310855 | None:intergenic | 35.0% | |
| ACTAATGAGTTTCTTAGCCT+AGG | + | chr5.4:49307561-49307580 | None:intergenic | 35.0% | |
| AGAAGCTATTATTGTGTGTG+AGG | - | chr5.4:49308280-49308299 | MS.gene89493:CDS | 35.0% | |
| AGTTCATTCCAAACTAGACT+CGG | + | chr5.4:49309712-49309731 | None:intergenic | 35.0% | |
| ATGGAAGAAAAGTGGTTATG+GGG | - | chr5.4:49308036-49308055 | MS.gene89493:intron | 35.0% | |
| CACAGTCATAATAATCACGT+GGG | - | chr5.4:49308370-49308389 | MS.gene89493:intron | 35.0% | |
| CCTTGAGGAAATTAACAGAT+GGG | + | chr5.4:49310835-49310854 | None:intergenic | 35.0% | |
| CTATCAACACTCTTTCTTCT+TGG | + | chr5.4:49307960-49307979 | None:intergenic | 35.0% | |
| CTCAAAAAAGGGGACTTAAA+GGG | + | chr5.4:49309495-49309514 | None:intergenic | 35.0% | |
| CTGCACAATTATCTTCTACA+TGG | + | chr5.4:49310936-49310955 | None:intergenic | 35.0% | |
| GGGAAATGAAGCATACAAAA+AGG | - | chr5.4:49308145-49308164 | MS.gene89493:CDS | 35.0% | |
| GTTTAATTGGTATGCACAGT+CGG | - | chr5.4:49310872-49310891 | MS.gene89493:CDS | 35.0% | |
| TAACTGAACTACGACTATTC+AGG | - | chr5.4:49311119-49311138 | MS.gene89493:CDS | 35.0% | |
| TAGCTTCCATGCATTTCTTA+AGG | + | chr5.4:49309001-49309020 | None:intergenic | 35.0% | |
| TCAATGGTTTACTTAGCATC+CGG | - | chr5.4:49309374-49309393 | MS.gene89493:CDS | 35.0% | |
| TCTCAAAAAAGGGGACTTAA+AGG | + | chr5.4:49309496-49309515 | None:intergenic | 35.0% | |
| TCTGTTAATTTCCTCAAGGT+TGG | - | chr5.4:49310836-49310855 | MS.gene89493:CDS | 35.0% | |
| TGAATTTGGTTGTGGTTTCA+TGG | - | chr5.4:49307512-49307531 | MS.gene89493:CDS | 35.0% | |
| TGACATCATCATCCGTATTA+TGG | + | chr5.4:49307791-49307810 | None:intergenic | 35.0% | |
| TGGTTATGGGGAATATTATG+AGG | - | chr5.4:49308048-49308067 | MS.gene89493:intron | 35.0% | |
| TTAAGAAATGCATGGAAGCT+AGG | - | chr5.4:49309000-49309019 | MS.gene89493:intron | 35.0% | |
| TTGACAAATGAACTAACCTG+TGG | + | chr5.4:49309095-49309114 | None:intergenic | 35.0% | |
| TTGTGAGCTCTGTTATAAGA+AGG | + | chr5.4:49308323-49308342 | None:intergenic | 35.0% | |
| TTGTGTGTGAGGAATCTATT+CGG | - | chr5.4:49308291-49308310 | MS.gene89493:CDS | 35.0% | |
| TTTCAAGGGAGAAAAGTCTT+TGG | + | chr5.4:49307907-49307926 | None:intergenic | 35.0% | |
| TTTGGAGAGCTTATGGAAAT+AGG | - | chr5.4:49308527-49308546 | MS.gene89493:intron | 35.0% | |
| ! | AAGTTAGTTTGGAGAGCTTA+TGG | - | chr5.4:49308520-49308539 | MS.gene89493:intron | 35.0% |
| ! | ATGTTGATAAGAGAAAAGCC+AGG | - | chr5.4:49310495-49310514 | MS.gene89493:CDS | 35.0% |
| ! | CTTCAAGGCATCAAAATTCA+TGG | - | chr5.4:49309885-49309904 | MS.gene89493:intron | 35.0% |
| ! | TACATTTTCCGAGTCTAGTT+TGG | - | chr5.4:49309701-49309720 | MS.gene89493:CDS | 35.0% |
| ! | TGTTGATAAGAGAAAAGCCA+GGG | - | chr5.4:49310496-49310515 | MS.gene89493:CDS | 35.0% |
| !! | AATAAGAGTGCTGCTTTGAT+TGG | - | chr5.4:49308242-49308261 | MS.gene89493:CDS | 35.0% |
| !! | ACCTGAAGTGTTGAAATCAA+TGG | - | chr5.4:49308124-49308143 | MS.gene89493:CDS | 35.0% |
| !! | CCGATTTTTCTAAAAACTCG+TGG | + | chr5.4:49311254-49311273 | None:intergenic | 35.0% |
| !! | CCTGAAGTGTTGAAATCAAT+GGG | - | chr5.4:49308125-49308144 | MS.gene89493:CDS | 35.0% |
| !! | GGTAATTTTGAAGAGGCTTT+GGG | - | chr5.4:49308167-49308186 | MS.gene89493:CDS | 35.0% |
| !! | TGAATGGAGTGTTGTACTAA+AGG | - | chr5.4:49309031-49309050 | MS.gene89493:intron | 35.0% |
| !!! | GTGTTGTTGGAGATTTTTTG+TGG | + | chr5.4:49307666-49307685 | None:intergenic | 35.0% |
| AAGAGTTGAACTAACACCAG+AGG | + | chr5.4:49307751-49307770 | None:intergenic | 40.0% | |
| ACACACTCTGCATTATCCTT+AGG | - | chr5.4:49309056-49309075 | MS.gene89493:intron | 40.0% | |
| CAAGTTTCCAGTGAGTTTCA+AGG | + | chr5.4:49307922-49307941 | None:intergenic | 40.0% | |
| CATAACAGAACTGAGTTGTG+TGG | + | chr5.4:49309949-49309968 | None:intergenic | 40.0% | |
| CATGTGTTAGTGTTCAGTGT+AGG | + | chr5.4:49310220-49310239 | None:intergenic | 40.0% | |
| CCCATCTGTTAATTTCCTCA+AGG | - | chr5.4:49310832-49310851 | MS.gene89493:CDS | 40.0% | |
| GAAAACCAAAAGCAACAAGG+TGG | - | chr5.4:49307485-49307504 | MS.gene89493:CDS | 40.0% | |
| GAGAGGTAAATGCAGTGTTA+AGG | - | chr5.4:49309818-49309837 | MS.gene89493:CDS | 40.0% | |
| GAGTGGAAACTTACTCTTCA+AGG | - | chr5.4:49309870-49309889 | MS.gene89493:intron | 40.0% | |
| GCATGTGCAGTATACAATGA+AGG | - | chr5.4:49309910-49309929 | MS.gene89493:intron | 40.0% | |
| GCTACGTGGTGAAGATATTA+AGG | - | chr5.4:49310569-49310588 | MS.gene89493:CDS | 40.0% | |
| GGGAGAAAAGTCTTTGGTTA+CGG | + | chr5.4:49307901-49307920 | None:intergenic | 40.0% | |
| GTAACATCAGCTAGAATGAG+TGG | - | chr5.4:49309853-49309872 | MS.gene89493:intron | 40.0% | |
| GTGGGAAATGAATTTGGTTG+TGG | - | chr5.4:49307504-49307523 | MS.gene89493:CDS | 40.0% | |
| GTTATAGCAAAGCAAGGCTA+AGG | - | chr5.4:49310052-49310071 | MS.gene89493:intron | 40.0% | |
| GTTCATGTAGTTGGAACGAT+GGG | - | chr5.4:49310449-49310468 | MS.gene89493:CDS | 40.0% | |
| GTTGTGCTCTTCAGTAACAA+GGG | - | chr5.4:49310761-49310780 | MS.gene89493:CDS | 40.0% | |
| TAACAGAGCTCACAATCGTT+TGG | - | chr5.4:49308328-49308347 | MS.gene89493:intron | 40.0% | |
| TCTAGCTGATGTTACTGCTT+TGG | + | chr5.4:49309848-49309867 | None:intergenic | 40.0% | |
| TGTTCATGTAGTTGGAACGA+TGG | - | chr5.4:49310448-49310467 | MS.gene89493:CDS | 40.0% | |
| TGTTGTGCTCTTCAGTAACA+AGG | - | chr5.4:49310760-49310779 | MS.gene89493:CDS | 40.0% | |
| TTGTGATTCTCCACGTTTGA+AGG | + | chr5.4:49310276-49310295 | None:intergenic | 40.0% | |
| ! | ACCTTCTGATTTTGCCAAGT+AGG | + | chr5.4:49311163-49311182 | None:intergenic | 40.0% |
| ! | AGGAGAAGTAGAAAAAGCAC+TGG | - | chr5.4:49308908-49308927 | MS.gene89493:CDS | 40.0% |
| ! | AGTCGACATTTGAGGTTGAT+CGG | + | chr5.4:49308941-49308960 | None:intergenic | 40.0% |
| ! | CCTTCTGATTTTGCCAAGTA+GGG | + | chr5.4:49311162-49311181 | None:intergenic | 40.0% |
| ! | CTGCTTTGATTGGATTAGGA+AGG | - | chr5.4:49308252-49308271 | MS.gene89493:CDS | 40.0% |
| ! | CTTTGGTACTTGAGCTTGTT+TGG | + | chr5.4:49308640-49308659 | None:intergenic | 40.0% |
| ! | GTACTTGAGCTTGTTTGGAT+TGG | + | chr5.4:49308635-49308654 | None:intergenic | 40.0% |
| ! | GTTGATAAGAGAAAAGCCAG+GGG | - | chr5.4:49310497-49310516 | MS.gene89493:CDS | 40.0% |
| ! | TTTTCTCCCTTGAAACTCAC+TGG | - | chr5.4:49307912-49307931 | MS.gene89493:intron | 40.0% |
| !! | AGTGCTGCTTTGATTGGATT+AGG | - | chr5.4:49308248-49308267 | MS.gene89493:CDS | 40.0% |
| !! | AGTGCTTACCTGTTGATGAT+AGG | - | chr5.4:49309350-49309369 | MS.gene89493:intron | 40.0% |
| !! | CCCATTGATTTCAACACTTC+AGG | + | chr5.4:49308128-49308147 | None:intergenic | 40.0% |
| !! | GGGTAATTTTGAAGAGGCTT+TGG | - | chr5.4:49308166-49308185 | MS.gene89493:CDS | 40.0% |
| !!! | ATTTCCCACCTTGTTGCTTT+TGG | + | chr5.4:49307493-49307512 | None:intergenic | 40.0% |
| AACAGATGGGAATCTCTTGC+TGG | + | chr5.4:49310822-49310841 | None:intergenic | 45.0% | |
| AAGCACAGAGTCGACATTTG+AGG | + | chr5.4:49308949-49308968 | None:intergenic | 45.0% | |
| ACACCGTTGTGATGCAAATG+CGG | + | chr5.4:49309659-49309678 | None:intergenic | 45.0% | |
| ACCAGCATATTGCATGCCAA+TGG | + | chr5.4:49309462-49309481 | None:intergenic | 45.0% | |
| AGACATTACGTAACCTCACC+TGG | - | chr5.4:49310642-49310661 | MS.gene89493:CDS | 45.0% | |
| AGCTCAACATCATCATCCTC+TGG | - | chr5.4:49307732-49307751 | MS.gene89493:intron | 45.0% | |
| AGTTGATCCAAGCAACAGAG+AGG | - | chr5.4:49309801-49309820 | MS.gene89493:CDS | 45.0% | |
| ATAGCAAAGCAAGGCTAAGG+AGG | - | chr5.4:49310055-49310074 | MS.gene89493:intron | 45.0% | |
| ATATTGTGCCTTACCAGGTG+AGG | + | chr5.4:49310658-49310677 | None:intergenic | 45.0% | |
| CAATCTGAACCGCTACATCA+AGG | + | chr5.4:49310357-49310376 | None:intergenic | 45.0% | |
| CATACACAGCATATGCCTCT+TGG | + | chr5.4:49309274-49309293 | None:intergenic | 45.0% | |
| CCATTGAGCCTATCATCAAC+AGG | + | chr5.4:49309361-49309380 | None:intergenic | 45.0% | |
| CCCTACTTGGCAAAATCAGA+AGG | - | chr5.4:49311159-49311178 | MS.gene89493:CDS | 45.0% | |
| GAACCGCATTTGCATCACAA+CGG | - | chr5.4:49309653-49309672 | MS.gene89493:intron | 45.0% | |
| GATTGAAGACCATCCCTACT+TGG | - | chr5.4:49311146-49311165 | MS.gene89493:CDS | 45.0% | |
| GCATTTACCTCTCTGTTGCT+TGG | + | chr5.4:49309811-49309830 | None:intergenic | 45.0% | |
| GTAGACCACATCTTGTGATG+TGG | - | chr5.4:49309619-49309638 | MS.gene89493:intron | 45.0% | |
| GTGTGAGGAATCTATTCGGT+TGG | - | chr5.4:49308295-49308314 | MS.gene89493:intron | 45.0% | |
| TAAGGCCACATCACAAGATG+TGG | + | chr5.4:49309627-49309646 | None:intergenic | 45.0% | |
| TAGCAAAGCAAGGCTAAGGA+GGG | - | chr5.4:49310056-49310075 | MS.gene89493:intron | 45.0% | |
| TTACGTAACCTCACCTGGTA+AGG | - | chr5.4:49310647-49310666 | MS.gene89493:CDS | 45.0% | |
| ! | CAGCATGTCGTTCTAAGCTA+GGG | - | chr5.4:49309977-49309996 | MS.gene89493:intron | 45.0% |
| ! | CTGATTTTGCCAAGTAGGGA+TGG | + | chr5.4:49311158-49311177 | None:intergenic | 45.0% |
| ! | GAGGGCATATTGTAATGCCA+AGG | - | chr5.4:49310074-49310093 | MS.gene89493:intron | 45.0% |
| !! | AACACACAAGCAAGTGTCGA+TGG | - | chr5.4:49310784-49310803 | MS.gene89493:CDS | 45.0% |
| !! | CCTGTTGATGATAGGCTCAA+TGG | - | chr5.4:49309358-49309377 | MS.gene89493:intron | 45.0% |
| !! | TGTGCTTGCTTTTCAAGCTC+AGG | - | chr5.4:49308962-49308981 | MS.gene89493:CDS | 45.0% |
| !!! | CATTTTTTAAAATATATTAA+AGG | - | chr5.4:49308785-49308804 | MS.gene89493:CDS | 5.0% |
| AAAGCCAGGGGATGAAGAAG+TGG | - | chr5.4:49310509-49310528 | MS.gene89493:CDS | 50.0% | |
| ACCAAACACGCCTTCAAACG+TGG | - | chr5.4:49310263-49310282 | MS.gene89493:intron | 50.0% | |
| AGGGGATGAAGAAGTGGCAA+GGG | - | chr5.4:49310515-49310534 | MS.gene89493:CDS | 50.0% | |
| ATGTCTCATAACCGCCAGTG+AGG | + | chr5.4:49308720-49308739 | None:intergenic | 50.0% | |
| CACCACGTAGCATCTTGAGT+TGG | + | chr5.4:49310560-49310579 | None:intergenic | 50.0% | |
| CTCCAACTCAAGATGCTACG+TGG | - | chr5.4:49310555-49310574 | MS.gene89493:CDS | 50.0% | |
| GACCGTAATGTGACTGCGTT+GGG | + | chr5.4:49310319-49310338 | None:intergenic | 50.0% | |
| GACGCACGTGTGAATCGTTT+CGG | - | chr5.4:49311004-49311023 | MS.gene89493:CDS | 50.0% | |
| GCACATTTGAGCGCGAATTG+AGG | + | chr5.4:49308688-49308707 | None:intergenic | 50.0% | |
| GCCATTGGCATGCAATATGC+TGG | - | chr5.4:49309458-49309477 | MS.gene89493:CDS | 50.0% | |
| GTAGGACACTGACACAACAC+TGG | + | chr5.4:49310202-49310221 | None:intergenic | 50.0% | |
| GTCCCAACGCAGTCACATTA+CGG | - | chr5.4:49310314-49310333 | MS.gene89493:intron | 50.0% | |
| TGACACAACACTGGCACATG+TGG | + | chr5.4:49310193-49310212 | None:intergenic | 50.0% | |
| TGACCGTAATGTGACTGCGT+TGG | + | chr5.4:49310320-49310339 | None:intergenic | 50.0% | |
| TGGAGCTGAATCAGCACCTA+AGG | + | chr5.4:49309075-49309094 | None:intergenic | 50.0% | |
| TGGTTTACTTAGCATCCGGC+AGG | - | chr5.4:49309378-49309397 | MS.gene89493:CDS | 50.0% | |
| ! | AAGCGTTGCTGAAGCTCGTA+AGG | - | chr5.4:49309246-49309265 | MS.gene89493:intron | 50.0% |
| ! | GAAGCTCGTAAGGTACCAAG+AGG | - | chr5.4:49309256-49309275 | MS.gene89493:intron | 50.0% |
| ! | GCAGCATGTCGTTCTAAGCT+AGG | - | chr5.4:49309976-49309995 | MS.gene89493:intron | 50.0% |
| ! | TCCACGTTTGAAGGCGTGTT+TGG | + | chr5.4:49310267-49310286 | None:intergenic | 50.0% |
| !! | AGTGGCAAGGGCTTTGTTTG+AGG | - | chr5.4:49310527-49310546 | MS.gene89493:CDS | 50.0% |
| !! | CAAGGGCTTTGTTTGAGGCT+CGG | - | chr5.4:49310532-49310551 | MS.gene89493:CDS | 50.0% |
| CAGGGGATGAAGAAGTGGCA+AGG | - | chr5.4:49310514-49310533 | MS.gene89493:CDS | 55.0% | |
| ! | CTTGCCACTTCTTCATCCCC+TGG | + | chr5.4:49310516-49310535 | None:intergenic | 55.0% |
| !! | AGGTGCTGATTCAGCTCCAC+AGG | - | chr5.4:49309076-49309095 | MS.gene89493:intron | 55.0% |
| !! | CAAGCAAGTGTCGATGGTGC+TGG | - | chr5.4:49310790-49310809 | MS.gene89493:CDS | 55.0% |
| AACCGCCAGTGAGGTCGCAT+TGG | + | chr5.4:49308711-49308730 | None:intergenic | 60.0% | |
| ACCGCCAGTGAGGTCGCATT+GGG | + | chr5.4:49308710-49308729 | None:intergenic | 60.0% | |
| TGTGCCCAATGCGACCTCAC+TGG | - | chr5.4:49308703-49308722 | MS.gene89493:CDS | 60.0% | |
| !! | GCAAGTGTCGATGGTGCTGG+AGG | - | chr5.4:49310793-49310812 | MS.gene89493:CDS | 60.0% |
| GCCCAATGCGACCTCACTGG+CGG | - | chr5.4:49308706-49308725 | MS.gene89493:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 49307477 | 49311293 | 49307477 | ID=MS.gene89493 |
| chr5.4 | mRNA | 49307477 | 49311293 | 49307477 | ID=MS.gene89493.t1;Parent=MS.gene89493 |
| chr5.4 | exon | 49310404 | 49311293 | 49310404 | ID=MS.gene89493.t1.exon1;Parent=MS.gene89493.t1 |
| chr5.4 | CDS | 49310404 | 49311293 | 49310404 | ID=cds.MS.gene89493.t1;Parent=MS.gene89493.t1 |
| chr5.4 | exon | 49309673 | 49309865 | 49309673 | ID=MS.gene89493.t1.exon2;Parent=MS.gene89493.t1 |
| chr5.4 | CDS | 49309673 | 49309865 | 49309673 | ID=cds.MS.gene89493.t1;Parent=MS.gene89493.t1 |
| chr5.4 | exon | 49309371 | 49309543 | 49309371 | ID=MS.gene89493.t1.exon3;Parent=MS.gene89493.t1 |
| chr5.4 | CDS | 49309371 | 49309543 | 49309371 | ID=cds.MS.gene89493.t1;Parent=MS.gene89493.t1 |
| chr5.4 | exon | 49308675 | 49309008 | 49308675 | ID=MS.gene89493.t1.exon4;Parent=MS.gene89493.t1 |
| chr5.4 | CDS | 49308675 | 49309008 | 49308675 | ID=cds.MS.gene89493.t1;Parent=MS.gene89493.t1 |
| chr5.4 | exon | 49308107 | 49308311 | 49308107 | ID=MS.gene89493.t1.exon5;Parent=MS.gene89493.t1 |
| chr5.4 | CDS | 49308107 | 49308311 | 49308107 | ID=cds.MS.gene89493.t1;Parent=MS.gene89493.t1 |
| chr5.4 | exon | 49307917 | 49308017 | 49307917 | ID=MS.gene89493.t1.exon6;Parent=MS.gene89493.t1 |
| chr5.4 | CDS | 49307917 | 49308017 | 49307917 | ID=cds.MS.gene89493.t1;Parent=MS.gene89493.t1 |
| chr5.4 | exon | 49307477 | 49307629 | 49307477 | ID=MS.gene89493.t1.exon7;Parent=MS.gene89493.t1 |
| chr5.4 | CDS | 49307477 | 49307629 | 49307477 | ID=cds.MS.gene89493.t1;Parent=MS.gene89493.t1 |
| Gene Sequence |
| Protein sequence |
