Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90275.t1 | XP_003608332.1 | 97.8 | 316 | 7 | 0 | 1 | 316 | 1 | 316 | 1.30E-170 | 609 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90275.t1 | O81884 | 77.8 | 316 | 70 | 0 | 1 | 316 | 4 | 319 | 3.4e-140 | 499.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90275.t1 | G7JTZ5 | 97.8 | 316 | 7 | 0 | 1 | 316 | 1 | 316 | 9.1e-171 | 609.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051662 | MS.gene90275 | 0.806994 | 6.28E-50 | -1.69E-46 |
| MS.gene053630 | MS.gene90275 | 0.82448 | 7.89E-54 | -1.69E-46 |
| MS.gene057439 | MS.gene90275 | 0.832831 | 7.55E-56 | -1.69E-46 |
| MS.gene059228 | MS.gene90275 | 0.824996 | 5.96E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene90275 | MS.gene061628 | PPI |
| MS.gene90275 | MS.gene96904 | PPI |
| MS.gene90275 | MS.gene062500 | PPI |
| MS.gene53676 | MS.gene90275 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90275.t1 | MTR_4g092750 | 97.785 | 316 | 7 | 0 | 1 | 316 | 1 | 316 | 0.0 | 637 |
| MS.gene90275.t1 | MTR_4g092750 | 97.473 | 277 | 7 | 0 | 1 | 277 | 1 | 277 | 0.0 | 560 |
| MS.gene90275.t1 | MTR_4g092750 | 98.175 | 274 | 5 | 0 | 1 | 274 | 1 | 274 | 0.0 | 559 |
| MS.gene90275.t1 | MTR_7g114980 | 31.746 | 252 | 152 | 7 | 6 | 247 | 16 | 257 | 2.82e-23 | 97.4 |
| MS.gene90275.t1 | MTR_7g114980 | 28.667 | 300 | 179 | 8 | 6 | 280 | 16 | 305 | 3.03e-23 | 98.6 |
| MS.gene90275.t1 | MTR_7g114970 | 30.268 | 261 | 160 | 7 | 5 | 259 | 11 | 255 | 3.46e-23 | 97.1 |
| MS.gene90275.t1 | MTR_7g114970 | 30.268 | 261 | 160 | 7 | 5 | 259 | 11 | 255 | 3.64e-23 | 97.1 |
| MS.gene90275.t1 | MTR_7g114970 | 30.268 | 261 | 160 | 7 | 5 | 259 | 11 | 255 | 5.62e-23 | 97.8 |
| MS.gene90275.t1 | MTR_1g047250 | 27.273 | 308 | 186 | 11 | 1 | 280 | 1 | 298 | 6.71e-23 | 97.1 |
| MS.gene90275.t1 | MTR_7g114990 | 28.328 | 293 | 183 | 9 | 6 | 280 | 18 | 301 | 2.06e-21 | 93.6 |
| MS.gene90275.t1 | MTR_7g115010 | 30.769 | 247 | 140 | 8 | 6 | 249 | 14 | 232 | 5.87e-21 | 92.0 |
| MS.gene90275.t1 | MTR_1g102750 | 28.352 | 261 | 164 | 8 | 5 | 258 | 9 | 253 | 2.05e-20 | 90.5 |
| MS.gene90275.t1 | MTR_1g102750 | 28.352 | 261 | 164 | 8 | 5 | 258 | 9 | 253 | 2.64e-20 | 89.7 |
| MS.gene90275.t1 | MTR_7g114970 | 36.538 | 156 | 88 | 4 | 5 | 154 | 11 | 161 | 5.27e-20 | 86.7 |
| MS.gene90275.t1 | MTR_7g021850 | 31.019 | 216 | 135 | 7 | 5 | 215 | 8 | 214 | 1.81e-17 | 82.0 |
| MS.gene90275.t1 | MTR_7g021680 | 31.481 | 216 | 133 | 7 | 5 | 215 | 8 | 213 | 1.96e-17 | 82.0 |
| MS.gene90275.t1 | MTR_7g021820 | 31.481 | 216 | 133 | 7 | 5 | 215 | 8 | 213 | 1.96e-17 | 82.0 |
| MS.gene90275.t1 | MTR_3g092140 | 24.917 | 301 | 183 | 13 | 11 | 280 | 44 | 332 | 1.49e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90275.t1 | AT4G33670 | 77.848 | 316 | 70 | 0 | 1 | 316 | 4 | 319 | 0.0 | 519 |
| MS.gene90275.t1 | AT1G04690 | 25.974 | 308 | 190 | 9 | 1 | 280 | 1 | 298 | 2.18e-22 | 95.9 |
| MS.gene90275.t1 | AT1G60750 | 32.870 | 216 | 130 | 5 | 5 | 214 | 12 | 218 | 1.13e-19 | 88.2 |
| MS.gene90275.t1 | AT1G60730 | 32.727 | 220 | 133 | 7 | 5 | 219 | 11 | 220 | 7.63e-19 | 86.3 |
| MS.gene90275.t1 | AT1G60680 | 31.674 | 221 | 135 | 6 | 5 | 219 | 11 | 221 | 2.31e-18 | 83.2 |
| MS.gene90275.t1 | AT1G60680 | 31.674 | 221 | 135 | 6 | 5 | 219 | 11 | 221 | 4.51e-18 | 84.0 |
| MS.gene90275.t1 | AT1G60690 | 32.727 | 220 | 133 | 7 | 5 | 219 | 11 | 220 | 1.57e-17 | 82.4 |
| MS.gene90275.t1 | AT5G53580 | 27.181 | 298 | 180 | 13 | 11 | 280 | 45 | 333 | 2.02e-17 | 82.4 |
| MS.gene90275.t1 | AT1G60710 | 30.909 | 220 | 137 | 7 | 5 | 219 | 11 | 220 | 8.24e-17 | 80.5 |
| MS.gene90275.t1 | AT1G10810 | 28.906 | 256 | 150 | 8 | 5 | 239 | 11 | 255 | 3.26e-16 | 77.4 |
| MS.gene90275.t1 | AT1G60730 | 30.380 | 237 | 136 | 8 | 5 | 219 | 11 | 240 | 8.81e-16 | 77.4 |
Find 78 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTGCTTCCTTCAGTTTC+TGG | 0.033628 | 4.2:+20349723 | None:intergenic |
| CAGTGTCATGATATTGAATT+TGG | 0.090600 | 4.2:-20349916 | MS.gene90275:CDS |
| CTCGAAATTTGAAGATATTA+TGG | 0.250466 | 4.2:-20350123 | MS.gene90275:intron |
| GCAACTTATTGCAAAGAAAA+TGG | 0.252619 | 4.2:-20348583 | MS.gene90275:CDS |
| GCAAGAGAACTTGCAGCTTC+TGG | 0.255338 | 4.2:-20347359 | MS.gene90275:CDS |
| TATTTACTTATGTTCTTGAT+AGG | 0.294080 | 4.2:-20349661 | MS.gene90275:CDS |
| CAAACTCTCGTCTACACTTC+TGG | 0.294180 | 4.2:+20349972 | None:intergenic |
| GCAGTACAGCTTGTTAAATA+AGG | 0.324806 | 4.2:-20348536 | MS.gene90275:CDS |
| GACTCGTTACATTGGGATTA+CGG | 0.325470 | 4.2:-20349699 | MS.gene90275:CDS |
| GGTGAAGCAGGATGCCATTC+AGG | 0.355943 | 4.2:+20349482 | None:intergenic |
| TCTCCTCTCGGCAACGTCTT+CGG | 0.372642 | 4.2:-20350292 | MS.gene90275:CDS |
| TGGGATTACGGGACTTCCTT+TGG | 0.377459 | 4.2:-20349687 | MS.gene90275:CDS |
| TCCTGCTTCACCGGAACTTA+AGG | 0.379403 | 4.2:-20349471 | MS.gene90275:intron |
| AAACTAAGCTCCGTCGGGTT+CGG | 0.379564 | 4.2:-20350319 | MS.gene90275:CDS |
| CAGAAGTGTAGACGAGAGTT+TGG | 0.384564 | 4.2:-20349971 | MS.gene90275:CDS |
| TCCTTCAGTTTCTGGAGTGC+AGG | 0.386056 | 4.2:+20349731 | None:intergenic |
| CAGTGCTTCTCCGTTGGCGA+TGG | 0.387532 | 4.2:-20349528 | MS.gene90275:CDS |
| ACTCGTTACATTGGGATTAC+GGG | 0.394705 | 4.2:-20349698 | MS.gene90275:CDS |
| TTACGTGAACTTGGAAGAAC+TGG | 0.400346 | 4.2:-20350346 | MS.gene90275:CDS |
| GCTACAATGTATTCACTTCT+CGG | 0.402496 | 4.2:+20350048 | None:intergenic |
| CTCTGTCAATGATTCGACTT+TGG | 0.415789 | 4.2:-20349594 | MS.gene90275:CDS |
| ATTGACAGAGTGATGGCAAT+AGG | 0.422905 | 4.2:+20349607 | None:intergenic |
| CAGCAAGGGGTCAACTCTGC+TGG | 0.427552 | 4.2:+20347261 | None:intergenic |
| ACCTTAAGTTCCGGTGAAGC+AGG | 0.436418 | 4.2:+20349470 | None:intergenic |
| ATGGGTCTTCTCACTGAGGC+TGG | 0.452747 | 4.2:-20349509 | MS.gene90275:CDS |
| GTTTGCTTGTTCTTCTGAAA+CGG | 0.454532 | 4.2:+20350267 | None:intergenic |
| CTGAGGCTGGCCCTCCTGAA+TGG | 0.457972 | 4.2:-20349496 | MS.gene90275:CDS |
| AACACCCTTGGACTTCAGAT+AGG | 0.459632 | 4.2:+20349559 | None:intergenic |
| CTCCAGAAACTGAAGGAAGC+AGG | 0.467577 | 4.2:-20349725 | MS.gene90275:CDS |
| CAGGGAAGACTCGTTACATT+GGG | 0.468667 | 4.2:-20349706 | MS.gene90275:CDS |
| AAAATGGAGTTACGTGAACT+TGG | 0.470953 | 4.2:-20350355 | MS.gene90275:CDS |
| TGAATTTGGATCGTTAGATC+AGG | 0.479668 | 4.2:-20349902 | MS.gene90275:intron |
| TAGGGTTCCGCCTGGAACAT+TGG | 0.482789 | 4.2:-20349642 | MS.gene90275:CDS |
| ATTTACTTATGTTCTTGATA+GGG | 0.486238 | 4.2:-20349660 | MS.gene90275:CDS |
| TGGCATGAGATCTGTCGAAC+AGG | 0.491310 | 4.2:-20348494 | MS.gene90275:intron |
| TGTCAATGATTCGACTTTGG+AGG | 0.493678 | 4.2:-20349591 | MS.gene90275:CDS |
| CATTATCAGTGCTTCTCCGT+TGG | 0.494180 | 4.2:-20349534 | MS.gene90275:CDS |
| AGTATCACATCCAATGTTCC+AGG | 0.498225 | 4.2:+20349632 | None:intergenic |
| TGAATGGCATCCTGCTTCAC+CGG | 0.501096 | 4.2:-20349480 | MS.gene90275:CDS |
| GAAATCACATCAGTTCTTGT+TGG | 0.502174 | 4.2:-20348514 | MS.gene90275:CDS |
| GATTACGGGACTTCCTTTGG+AGG | 0.507961 | 4.2:-20349684 | MS.gene90275:CDS |
| GGGTTCGGAGCTTCTCCTCT+CGG | 0.519474 | 4.2:-20350304 | MS.gene90275:CDS |
| AGTGCTTCTCCGTTGGCGAT+GGG | 0.519640 | 4.2:-20349527 | MS.gene90275:CDS |
| GCAGGGAAGACTCGTTACAT+TGG | 0.524639 | 4.2:-20349707 | MS.gene90275:CDS |
| TAAGACAAGACCTTAAGTTC+CGG | 0.528236 | 4.2:+20349461 | None:intergenic |
| GACTTAAACTAAGCTCCGTC+GGG | 0.541712 | 4.2:-20350324 | MS.gene90275:CDS |
| ACTGATAATGCCAACACCCT+TGG | 0.547863 | 4.2:+20349547 | None:intergenic |
| GTTCTTGATAGGGTTCCGCC+TGG | 0.552103 | 4.2:-20349650 | MS.gene90275:CDS |
| GGACTTAAACTAAGCTCCGT+CGG | 0.552405 | 4.2:-20350325 | MS.gene90275:CDS |
| CAACTCTGCTGGATTCCGCT+AGG | 0.566406 | 4.2:+20347272 | None:intergenic |
| TATCTGAAGTCCAAGGGTGT+TGG | 0.578204 | 4.2:-20349557 | MS.gene90275:CDS |
| ACACCCTTGGACTTCAGATA+GGG | 0.582023 | 4.2:+20349560 | None:intergenic |
| TACATTGTAGCAACTAAGTG+TGG | 0.594346 | 4.2:-20350036 | MS.gene90275:CDS |
| TCCAGAAACTGAAGGAAGCA+GGG | 0.594834 | 4.2:-20349724 | MS.gene90275:CDS |
| GTCTGAGAAAGTGCTCGGAA+AGG | 0.603040 | 4.2:-20350091 | MS.gene90275:CDS |
| AGTGCCCTATCTGAAGTCCA+AGG | 0.603565 | 4.2:-20349564 | MS.gene90275:CDS |
| GAAGCAGGATGCCATTCAGG+AGG | 0.605422 | 4.2:+20349485 | None:intergenic |
| ACATAAGTAAATACCTCCAA+AGG | 0.605576 | 4.2:+20349671 | None:intergenic |
| AGTGTCGAAGAAGTTGATGC+CGG | 0.606690 | 4.2:+20350219 | None:intergenic |
| GTGTAGACGAGAGTTTGGAA+AGG | 0.606943 | 4.2:-20349966 | MS.gene90275:CDS |
| AGGAGAAGCTCCGAACCCGA+CGG | 0.607761 | 4.2:+20350309 | None:intergenic |
| ACACTGTCTGAGAAAGTGCT+CGG | 0.611937 | 4.2:-20350096 | MS.gene90275:CDS |
| GTGCCCTATCTGAAGTCCAA+GGG | 0.616458 | 4.2:-20349563 | MS.gene90275:CDS |
| TTGTAGCAACTAAGTGTGGA+AGG | 0.618298 | 4.2:-20350032 | MS.gene90275:CDS |
| TCGAATCATTGACAGAGTGA+TGG | 0.619506 | 4.2:+20349600 | None:intergenic |
| GTGAGAAGACCCATCGCCAA+CGG | 0.621669 | 4.2:+20349518 | None:intergenic |
| GAAATTTGAAGATATTATGG+AGG | 0.631142 | 4.2:-20350120 | MS.gene90275:intron |
| TCCTGCACTCCAGAAACTGA+AGG | 0.632500 | 4.2:-20349732 | MS.gene90275:CDS |
| GAAGCGGCTCTGTCAGAAGT+CGG | 0.634736 | 4.2:-20347329 | MS.gene90275:CDS |
| AGAAGCTGCAAGTTCTCTTG+CGG | 0.638741 | 4.2:+20347361 | None:intergenic |
| AAGTGTGGAAGGTACAAAGA+GGG | 0.661768 | 4.2:-20350021 | MS.gene90275:CDS |
| TAAGTGTGGAAGGTACAAAG+AGG | 0.663345 | 4.2:-20350022 | MS.gene90275:CDS |
| AAGCAGGATGCCATTCAGGA+GGG | 0.673956 | 4.2:+20349486 | None:intergenic |
| AGCTTCTGGAATCGACGAAG+CGG | 0.691488 | 4.2:-20347345 | MS.gene90275:CDS |
| GGCGATGGGTCTTCTCACTG+AGG | 0.694882 | 4.2:-20349513 | MS.gene90275:CDS |
| TTGAAAAGCGATACGAACAG+AGG | 0.699253 | 4.2:+20350243 | None:intergenic |
| GAACCGAAGACGTTGCCGAG+AGG | 0.706655 | 4.2:+20350289 | None:intergenic |
| ATCACATCCAATGTTCCAGG+CGG | 0.724421 | 4.2:+20349635 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAAATATAAAGTTTTAATT+TGG | - | chr4.2:20348739-20348758 | MS.gene90275:intron | 10.0% |
| !! | ACATATATTATCAATTATAG+TGG | + | chr4.2:20350073-20350092 | None:intergenic | 15.0% |
| !!! | TAATTTGCTACTAAATTTAT+CGG | - | chr4.2:20348441-20348460 | MS.gene90275:intron | 15.0% |
| !!! | TATATTTTCTCAATTTAGAA+CGG | + | chr4.2:20350222-20350241 | None:intergenic | 15.0% |
| !!! | TCTTGTCTTATTATTAATTA+CGG | - | chr4.2:20348175-20348194 | MS.gene90275:intron | 15.0% |
| !!! | TTGATAATATATGTCAATAT+TGG | - | chr4.2:20350079-20350098 | MS.gene90275:CDS | 15.0% |
| !! | ATTCGTTCAATATATCATAT+GGG | + | chr4.2:20348827-20348846 | None:intergenic | 20.0% |
| !! | ATTTACTTATGTTCTTGATA+GGG | - | chr4.2:20347963-20347982 | MS.gene90275:intron | 20.0% |
| !! | CAATACATGTTACTAAATTA+TGG | + | chr4.2:20349709-20349728 | None:intergenic | 20.0% |
| !! | TATTTACTTATGTTCTTGAT+AGG | - | chr4.2:20347962-20347981 | MS.gene90275:intron | 20.0% |
| !! | TTTGTATATGTAAATCAGAA+AGG | - | chr4.2:20348581-20348600 | MS.gene90275:CDS | 20.0% |
| !!! | AATTTGCTACTAAATTTATC+GGG | - | chr4.2:20348442-20348461 | MS.gene90275:intron | 20.0% |
| !!! | ATTAAGTTTTTTATCCAAAG+AGG | - | chr4.2:20347782-20347801 | MS.gene90275:intron | 20.0% |
| !!! | GTTCTAAATTGAGAAAATAT+AGG | - | chr4.2:20350221-20350240 | MS.gene90275:CDS | 20.0% |
| !!! | TGCTATTTTTCTTATACAAA+AGG | - | chr4.2:20348468-20348487 | MS.gene90275:intron | 20.0% |
| ! | AAATATGTACTTGTTTAGCT+TGG | - | chr4.2:20349430-20349449 | MS.gene90275:intron | 25.0% |
| ! | AAATGTCAATCTCTTAACAA+AGG | + | chr4.2:20349746-20349765 | None:intergenic | 25.0% |
| ! | AACAAGTACATAATTTACAG+AGG | + | chr4.2:20349336-20349355 | None:intergenic | 25.0% |
| ! | AATGCAATATTTAAGCAAGT+GGG | - | chr4.2:20349601-20349620 | MS.gene90275:CDS | 25.0% |
| ! | AATTATGTACTTGTTTAGCT+TGG | - | chr4.2:20349341-20349360 | MS.gene90275:intron | 25.0% |
| ! | AATTTCAGTTGTAACTTAAC+TGG | - | chr4.2:20347809-20347828 | MS.gene90275:intron | 25.0% |
| ! | CATATTTCATCAAAACTAAC+TGG | - | chr4.2:20348971-20348990 | MS.gene90275:intron | 25.0% |
| ! | CATTCGTTCAATATATCATA+TGG | + | chr4.2:20348828-20348847 | None:intergenic | 25.0% |
| ! | CTAAATTGAGAAAATATAGG+TGG | - | chr4.2:20350224-20350243 | MS.gene90275:CDS | 25.0% |
| ! | CTCGAAATTTGAAGATATTA+TGG | - | chr4.2:20347500-20347519 | MS.gene90275:intron | 25.0% |
| ! | GAAATTTGAAGATATTATGG+AGG | - | chr4.2:20347503-20347522 | MS.gene90275:intron | 25.0% |
| ! | TACACTATAATAAGCAAACA+TGG | - | chr4.2:20349896-20349915 | MS.gene90275:intron | 25.0% |
| ! | TGATCATAACATGCAAATTA+AGG | + | chr4.2:20348284-20348303 | None:intergenic | 25.0% |
| ! | TTCGTTCAATATATCATATG+GGG | + | chr4.2:20348826-20348845 | None:intergenic | 25.0% |
| !! | AACAAGTACATATTTTACAG+AGG | + | chr4.2:20349425-20349444 | None:intergenic | 25.0% |
| !! | GTTTATGTTGTTGTTGTAAA+AGG | - | chr4.2:20348518-20348537 | MS.gene90275:CDS | 25.0% |
| !! | TTTTTGTGCAAAAGATGATT+TGG | + | chr4.2:20348410-20348429 | None:intergenic | 25.0% |
| AACTCCACAAATTATGTGAT+AGG | + | chr4.2:20349653-20349672 | None:intergenic | 30.0% | |
| AACTGAAATTAGATCCTCTT+TGG | + | chr4.2:20347799-20347818 | None:intergenic | 30.0% | |
| AACTGGTAACTGTATTTCAA+GGG | - | chr4.2:20347826-20347845 | MS.gene90275:intron | 30.0% | |
| AATGAAAACAACAAAGAGAG+AGG | + | chr4.2:20349295-20349314 | None:intergenic | 30.0% | |
| AATTGAGAAAATATAGGTGG+AGG | - | chr4.2:20350227-20350246 | MS.gene90275:CDS | 30.0% | |
| ACATAAGTAAATACCTCCAA+AGG | + | chr4.2:20347955-20347974 | None:intergenic | 30.0% | |
| AGAACCTATCACATAATTTG+TGG | - | chr4.2:20349646-20349665 | MS.gene90275:CDS | 30.0% | |
| AGAACTAAGTTCTTATACAC+CGG | + | chr4.2:20348553-20348572 | None:intergenic | 30.0% | |
| AGAACTACTTGCAAATCATT+TGG | + | chr4.2:20349851-20349870 | None:intergenic | 30.0% | |
| ATACAAAAGGATAACGTTAG+TGG | - | chr4.2:20348481-20348500 | MS.gene90275:intron | 30.0% | |
| ATCACTGCATTCAATATTCT+TGG | - | chr4.2:20348848-20348867 | MS.gene90275:intron | 30.0% | |
| ATGTCAATATTGGAGTTCTT+GGG | - | chr4.2:20350089-20350108 | MS.gene90275:CDS | 30.0% | |
| CAATGCAATATTTAAGCAAG+TGG | - | chr4.2:20349600-20349619 | MS.gene90275:CDS | 30.0% | |
| CACTTGCTTAAATATTGCAT+TGG | + | chr4.2:20349602-20349621 | None:intergenic | 30.0% | |
| CAGTGTCATGATATTGAATT+TGG | - | chr4.2:20347707-20347726 | MS.gene90275:intron | 30.0% | |
| GAAATACAGAAAATTGAGCA+TGG | - | chr4.2:20348621-20348640 | MS.gene90275:intron | 30.0% | |
| GAACTACTTGCAAATCATTT+GGG | + | chr4.2:20349850-20349869 | None:intergenic | 30.0% | |
| GCAACTTATTGCAAAGAAAA+TGG | - | chr4.2:20349040-20349059 | MS.gene90275:intron | 30.0% | |
| TAACTGGTAACTGTATTTCA+AGG | - | chr4.2:20347825-20347844 | MS.gene90275:intron | 30.0% | |
| TACAAAAGGATAACGTTAGT+GGG | - | chr4.2:20348482-20348501 | MS.gene90275:intron | 30.0% | |
| TATGTCAATATTGGAGTTCT+TGG | - | chr4.2:20350088-20350107 | MS.gene90275:CDS | 30.0% | |
| TCGTTCAATATATCATATGG+GGG | + | chr4.2:20348825-20348844 | None:intergenic | 30.0% | |
| TGAAATGAAAAAAGAGAGAG+AGG | + | chr4.2:20347446-20347465 | None:intergenic | 30.0% | |
| TTGTAAAAGGATAACGTTTC+CGG | - | chr4.2:20348531-20348550 | MS.gene90275:CDS | 30.0% | |
| ! | AAAACTAGCTTACAACACTA+AGG | + | chr4.2:20348309-20348328 | None:intergenic | 30.0% |
| ! | AATCACAGATTTTCAGAACA+TGG | + | chr4.2:20349202-20349221 | None:intergenic | 30.0% |
| ! | CTCAATTTTCTGTATTTCTC+TGG | + | chr4.2:20348619-20348638 | None:intergenic | 30.0% |
| !! | TGTTCTGAAAATCTGTGATT+TGG | - | chr4.2:20349202-20349221 | MS.gene90275:intron | 30.0% |
| !!! | CTGGTTCTATGTATTTTGTT+TGG | - | chr4.2:20348990-20349009 | MS.gene90275:intron | 30.0% |
| AAACATCATTCAGTACTAGG+AGG | + | chr4.2:20348889-20348908 | None:intergenic | 35.0% | |
| ACTGGTAACTGTATTTCAAG+GGG | - | chr4.2:20347827-20347846 | MS.gene90275:intron | 35.0% | |
| AGATTGACATTTGCATGCAT+TGG | - | chr4.2:20349754-20349773 | MS.gene90275:intron | 35.0% | |
| CACAAACATCATTCAGTACT+AGG | + | chr4.2:20348892-20348911 | None:intergenic | 35.0% | |
| CTACCAAGTGAACTCAAATT+AGG | + | chr4.2:20348244-20348263 | None:intergenic | 35.0% | |
| CTTAACAAAGGACCTTCAAA+CGG | + | chr4.2:20349734-20349753 | None:intergenic | 35.0% | |
| GAAATCACATCAGTTCTTGT+TGG | - | chr4.2:20349109-20349128 | MS.gene90275:intron | 35.0% | |
| GCTACAATGTATTCACTTCT+CGG | + | chr4.2:20347578-20347597 | None:intergenic | 35.0% | |
| GTTCATCTTTATCAAGTGAC+TGG | + | chr4.2:20350200-20350219 | None:intergenic | 35.0% | |
| TAAGACAAGACCTTAAGTTC+CGG | + | chr4.2:20348165-20348184 | None:intergenic | 35.0% | |
| TACATTGTAGCAACTAAGTG+TGG | - | chr4.2:20347587-20347606 | MS.gene90275:intron | 35.0% | |
| TGAATTTGGATCGTTAGATC+AGG | - | chr4.2:20347721-20347740 | MS.gene90275:intron | 35.0% | |
| ! | ACATGTATTGATCCGTTTGA+AGG | - | chr4.2:20349719-20349738 | MS.gene90275:CDS | 35.0% |
| ! | ACCAACAGGAGTATGAAAAA+TGG | - | chr4.2:20349950-20349969 | MS.gene90275:CDS | 35.0% |
| ! | AGACCTAATTTGAGTTCACT+TGG | - | chr4.2:20348238-20348257 | MS.gene90275:intron | 35.0% |
| ! | ATTTTTGACAGGCTTCAGAA+TGG | + | chr4.2:20350322-20350341 | None:intergenic | 35.0% |
| ! | CTAGTACTGAATGATGTTTG+TGG | - | chr4.2:20348890-20348909 | MS.gene90275:intron | 35.0% |
| ! | GAATCACTGTTTTCTGCTTA+TGG | - | chr4.2:20348936-20348955 | MS.gene90275:intron | 35.0% |
| ! | GTTTGCTTGTTCTTCTGAAA+CGG | + | chr4.2:20347359-20347378 | None:intergenic | 35.0% |
| ! | TTTTGTGCCGTAAAACAAGT+GGG | - | chr4.2:20349671-20349690 | MS.gene90275:CDS | 35.0% |
| !! | GCAGTACAGCTTGTTAAATA+AGG | - | chr4.2:20349087-20349106 | MS.gene90275:intron | 35.0% |
| !! | TCCATTTTTCATACTCCTGT+TGG | + | chr4.2:20349954-20349973 | None:intergenic | 35.0% |
| !!! | ATGATAGCCCACTTGTTTTA+CGG | + | chr4.2:20349681-20349700 | None:intergenic | 35.0% |
| AAAAATCAGTCATGGCCTAG+CGG | - | chr4.2:20350336-20350355 | MS.gene90275:CDS | 40.0% | |
| AAGGATAACGTTAGTGGGAT+AGG | - | chr4.2:20348487-20348506 | MS.gene90275:intron | 40.0% | |
| ACTCGTTACATTGGGATTAC+GGG | - | chr4.2:20347925-20347944 | MS.gene90275:intron | 40.0% | |
| AGAGAGAGGTAACAATCTGA+TGG | + | chr4.2:20349281-20349300 | None:intergenic | 40.0% | |
| AGCCTGTCAAAAATCAGTCA+TGG | - | chr4.2:20350328-20350347 | MS.gene90275:CDS | 40.0% | |
| AGGATAACGTTAGTGGGATA+GGG | - | chr4.2:20348488-20348507 | MS.gene90275:intron | 40.0% | |
| AGTATCACATCCAATGTTCC+AGG | + | chr4.2:20347994-20348013 | None:intergenic | 40.0% | |
| ATGTGATAGGTTCTTCGTCT+AGG | + | chr4.2:20349640-20349659 | None:intergenic | 40.0% | |
| ATTGACAGAGTGATGGCAAT+AGG | + | chr4.2:20348019-20348038 | None:intergenic | 40.0% | |
| CTCTGTCAATGATTCGACTT+TGG | - | chr4.2:20348029-20348048 | MS.gene90275:intron | 40.0% | |
| CTTTGGTATCACTGTATAGC+TGG | - | chr4.2:20349254-20349273 | MS.gene90275:intron | 40.0% | |
| GACTCGTTACATTGGGATTA+CGG | - | chr4.2:20347924-20347943 | MS.gene90275:intron | 40.0% | |
| TATGGGGGAAATCAGTAGTT+TGG | + | chr4.2:20348810-20348829 | None:intergenic | 40.0% | |
| TCGAATCATTGACAGAGTGA+TGG | + | chr4.2:20348026-20348045 | None:intergenic | 40.0% | |
| TGTCAATGATTCGACTTTGG+AGG | - | chr4.2:20348032-20348051 | MS.gene90275:intron | 40.0% | |
| TTACGTGAACTTGGAAGAAC+TGG | - | chr4.2:20347277-20347296 | MS.gene90275:CDS | 40.0% | |
| TTGAAAAGCGATACGAACAG+AGG | + | chr4.2:20347383-20347402 | None:intergenic | 40.0% | |
| TTGTAGCAACTAAGTGTGGA+AGG | - | chr4.2:20347591-20347610 | MS.gene90275:intron | 40.0% | |
| ! | AAGTGTGGAAGGTACAAAGA+GGG | - | chr4.2:20347602-20347621 | MS.gene90275:intron | 40.0% |
| ! | ACTGTTTTCTGCTTATGGTC+TGG | - | chr4.2:20348941-20348960 | MS.gene90275:intron | 40.0% |
| ! | GTTTTGTGCCGTAAAACAAG+TGG | - | chr4.2:20349670-20349689 | MS.gene90275:CDS | 40.0% |
| ! | TAAGTGTGGAAGGTACAAAG+AGG | - | chr4.2:20347601-20347620 | MS.gene90275:intron | 40.0% |
| !! | GATACCAAAGCTTTAGAGCA+AGG | + | chr4.2:20349244-20349263 | None:intergenic | 40.0% |
| !! | GTTCGTATCGCTTTTCAATC+CGG | - | chr4.2:20347385-20347404 | MS.gene90275:intron | 40.0% |
| !! | TAAGCCTTGCTCTAAAGCTT+TGG | - | chr4.2:20349237-20349256 | MS.gene90275:intron | 40.0% |
| !! | TGCAAAAGATGATTTGGTGC+AGG | + | chr4.2:20348404-20348423 | None:intergenic | 40.0% |
| AACACCCTTGGACTTCAGAT+AGG | + | chr4.2:20348067-20348086 | None:intergenic | 45.0% | |
| ACACCCTTGGACTTCAGATA+GGG | + | chr4.2:20348066-20348085 | None:intergenic | 45.0% | |
| AGAAGCTGCAAGTTCTCTTG+CGG | + | chr4.2:20350265-20350284 | None:intergenic | 45.0% | |
| ATCACATCCAATGTTCCAGG+CGG | + | chr4.2:20347991-20348010 | None:intergenic | 45.0% | |
| CAAACTCTCGTCTACACTTC+TGG | + | chr4.2:20347654-20347673 | None:intergenic | 45.0% | |
| CAGGGAAGACTCGTTACATT+GGG | - | chr4.2:20347917-20347936 | MS.gene90275:intron | 45.0% | |
| CATTATCAGTGCTTCTCCGT+TGG | - | chr4.2:20348089-20348108 | MS.gene90275:intron | 45.0% | |
| GACTTAAACTAAGCTCCGTC+GGG | - | chr4.2:20347299-20347318 | MS.gene90275:CDS | 45.0% | |
| GAGAGAGAGGAAATAGCGTA+CGG | + | chr4.2:20347433-20347452 | None:intergenic | 45.0% | |
| GGACTTAAACTAAGCTCCGT+CGG | - | chr4.2:20347298-20347317 | MS.gene90275:CDS | 45.0% | |
| GTGTAGACGAGAGTTTGGAA+AGG | - | chr4.2:20347657-20347676 | MS.gene90275:intron | 45.0% | |
| TCCAGAAACTGAAGGAAGCA+GGG | - | chr4.2:20347899-20347918 | MS.gene90275:intron | 45.0% | |
| TCCTCATACTCTCTACCAAC+AGG | - | chr4.2:20349936-20349955 | MS.gene90275:CDS | 45.0% | |
| ! | ACTGATAATGCCAACACCCT+TGG | + | chr4.2:20348079-20348098 | None:intergenic | 45.0% |
| ! | CAGAAGTGTAGACGAGAGTT+TGG | - | chr4.2:20347652-20347671 | MS.gene90275:intron | 45.0% |
| ! | GTTGGTAGAGAGTATGAGGA+AGG | + | chr4.2:20349936-20349955 | None:intergenic | 45.0% |
| ! | TATCTGAAGTCCAAGGGTGT+TGG | - | chr4.2:20348066-20348085 | MS.gene90275:intron | 45.0% |
| ! | TCCTGTTGGTAGAGAGTATG+AGG | + | chr4.2:20349940-20349959 | None:intergenic | 45.0% |
| !! | ACACTGTCTGAGAAAGTGCT+CGG | - | chr4.2:20347527-20347546 | MS.gene90275:intron | 45.0% |
| !! | AGTGTCGAAGAAGTTGATGC+CGG | + | chr4.2:20347407-20347426 | None:intergenic | 45.0% |
| !! | GGCCATGACTGATTTTTGAC+AGG | + | chr4.2:20350333-20350352 | None:intergenic | 45.0% |
| !! | TAAGCAAGTGGGCTATCATC+AGG | - | chr4.2:20349612-20349631 | MS.gene90275:CDS | 45.0% |
| AAACTAAGCTCCGTCGGGTT+CGG | - | chr4.2:20347304-20347323 | MS.gene90275:CDS | 50.0% | |
| AAGCAGGATGCCATTCAGGA+GGG | + | chr4.2:20348140-20348159 | None:intergenic | 50.0% | |
| ACCTTAAGTTCCGGTGAAGC+AGG | + | chr4.2:20348156-20348175 | None:intergenic | 50.0% | |
| CTCCAGAAACTGAAGGAAGC+AGG | - | chr4.2:20347898-20347917 | MS.gene90275:intron | 50.0% | |
| GATTACGGGACTTCCTTTGG+AGG | - | chr4.2:20347939-20347958 | MS.gene90275:intron | 50.0% | |
| GCAAGAGAACTTGCAGCTTC+TGG | - | chr4.2:20350264-20350283 | MS.gene90275:CDS | 50.0% | |
| GCAGGGAAGACTCGTTACAT+TGG | - | chr4.2:20347916-20347935 | MS.gene90275:intron | 50.0% | |
| TCCCTGCTTCCTTCAGTTTC+TGG | + | chr4.2:20347903-20347922 | None:intergenic | 50.0% | |
| TCCTGCACTCCAGAAACTGA+AGG | - | chr4.2:20347891-20347910 | MS.gene90275:intron | 50.0% | |
| TCCTGCTTCACCGGAACTTA+AGG | - | chr4.2:20348152-20348171 | MS.gene90275:intron | 50.0% | |
| TGAATGGCATCCTGCTTCAC+CGG | - | chr4.2:20348143-20348162 | MS.gene90275:intron | 50.0% | |
| TGGCATGAGATCTGTCGAAC+AGG | - | chr4.2:20349129-20349148 | MS.gene90275:intron | 50.0% | |
| TGGGATTACGGGACTTCCTT+TGG | - | chr4.2:20347936-20347955 | MS.gene90275:intron | 50.0% | |
| TTGGAGTTCTTGGGTGCACT+AGG | - | chr4.2:20350098-20350117 | MS.gene90275:CDS | 50.0% | |
| ! | AGTGCCCTATCTGAAGTCCA+AGG | - | chr4.2:20348059-20348078 | MS.gene90275:intron | 50.0% |
| ! | GTGCCCTATCTGAAGTCCAA+GGG | - | chr4.2:20348060-20348079 | MS.gene90275:intron | 50.0% |
| !! | AGCTTCTGGAATCGACGAAG+CGG | - | chr4.2:20350278-20350297 | MS.gene90275:CDS | 50.0% |
| !! | GTCTGAGAAAGTGCTCGGAA+AGG | - | chr4.2:20347532-20347551 | MS.gene90275:intron | 50.0% |
| !! | TCCTTCAGTTTCTGGAGTGC+AGG | + | chr4.2:20347895-20347914 | None:intergenic | 50.0% |
| AGTGCTTCTCCGTTGGCGAT+GGG | - | chr4.2:20348096-20348115 | MS.gene90275:intron | 55.0% | |
| ATGGGTCTTCTCACTGAGGC+TGG | - | chr4.2:20348114-20348133 | MS.gene90275:intron | 55.0% | |
| CAACTCTGCTGGATTCCGCT+AGG | + | chr4.2:20350354-20350373 | None:intergenic | 55.0% | |
| GAAGCAGGATGCCATTCAGG+AGG | + | chr4.2:20348141-20348160 | None:intergenic | 55.0% | |
| GAAGCGGCTCTGTCAGAAGT+CGG | - | chr4.2:20350294-20350313 | MS.gene90275:CDS | 55.0% | |
| GGTGAAGCAGGATGCCATTC+AGG | + | chr4.2:20348144-20348163 | None:intergenic | 55.0% | |
| GTGAGAAGACCCATCGCCAA+CGG | + | chr4.2:20348108-20348127 | None:intergenic | 55.0% | |
| GTTCTTGATAGGGTTCCGCC+TGG | - | chr4.2:20347973-20347992 | MS.gene90275:intron | 55.0% | |
| TAGGGTTCCGCCTGGAACAT+TGG | - | chr4.2:20347981-20348000 | MS.gene90275:intron | 55.0% | |
| TCTCCTCTCGGCAACGTCTT+CGG | - | chr4.2:20347331-20347350 | MS.gene90275:CDS | 55.0% | |
| AGGAGAAGCTCCGAACCCGA+CGG | + | chr4.2:20347317-20347336 | None:intergenic | 60.0% | |
| CAGTGCTTCTCCGTTGGCGA+TGG | - | chr4.2:20348095-20348114 | MS.gene90275:intron | 60.0% | |
| GAACCGAAGACGTTGCCGAG+AGG | + | chr4.2:20347337-20347356 | None:intergenic | 60.0% | |
| GGCGATGGGTCTTCTCACTG+AGG | - | chr4.2:20348110-20348129 | MS.gene90275:intron | 60.0% | |
| GGGTTCGGAGCTTCTCCTCT+CGG | - | chr4.2:20347319-20347338 | MS.gene90275:CDS | 60.0% | |
| ! | CTGAGGCTGGCCCTCCTGAA+TGG | - | chr4.2:20348127-20348146 | MS.gene90275:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 20347271 | 20350374 | 20347271 | ID=MS.gene90275 |
| chr4.2 | mRNA | 20347271 | 20350374 | 20347271 | ID=MS.gene90275.t1;Parent=MS.gene90275 |
| chr4.2 | exon | 20350214 | 20350374 | 20350214 | ID=MS.gene90275.t1.exon1;Parent=MS.gene90275.t1 |
| chr4.2 | CDS | 20350214 | 20350374 | 20350214 | ID=cds.MS.gene90275.t1;Parent=MS.gene90275.t1 |
| chr4.2 | exon | 20349903 | 20350131 | 20349903 | ID=MS.gene90275.t1.exon2;Parent=MS.gene90275.t1 |
| chr4.2 | CDS | 20349903 | 20350131 | 20349903 | ID=cds.MS.gene90275.t1;Parent=MS.gene90275.t1 |
| chr4.2 | exon | 20349472 | 20349771 | 20349472 | ID=MS.gene90275.t1.exon3;Parent=MS.gene90275.t1 |
| chr4.2 | CDS | 20349472 | 20349771 | 20349472 | ID=cds.MS.gene90275.t1;Parent=MS.gene90275.t1 |
| chr4.2 | exon | 20348495 | 20348623 | 20348495 | ID=MS.gene90275.t1.exon4;Parent=MS.gene90275.t1 |
| chr4.2 | CDS | 20348495 | 20348623 | 20348495 | ID=cds.MS.gene90275.t1;Parent=MS.gene90275.t1 |
| chr4.2 | exon | 20347271 | 20347402 | 20347271 | ID=MS.gene90275.t1.exon5;Parent=MS.gene90275.t1 |
| chr4.2 | CDS | 20347271 | 20347402 | 20347271 | ID=cds.MS.gene90275.t1;Parent=MS.gene90275.t1 |
| Gene Sequence |
| Protein sequence |
