AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene90789


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90789.t1 MTR_1g116330 93.750 544 15 7 1 528 1 541 0.0 884
MS.gene90789.t1 MTR_2g061360 55.981 209 74 5 155 359 80 274 6.39e-67 218
MS.gene90789.t1 MTR_2g061290 56.284 183 67 5 157 335 81 254 9.70e-52 177
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90789.t1 AT5G19900 51.089 505 160 22 1 461 1 462 2.52e-124 373
MS.gene90789.t1 AT5G19900 51.089 505 160 22 1 461 1 462 2.52e-124 373
MS.gene90789.t1 AT5G19900 51.089 505 160 22 1 461 1 462 2.52e-124 373
MS.gene90789.t1 AT5G19900 51.089 505 160 22 1 461 1 462 2.52e-124 373
MS.gene90789.t1 AT5G19900 51.089 505 160 22 1 461 1 462 2.52e-124 373

Find 159 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGCATTAAACTTCTTCTT+AGG 0.137829 1.4:-88208778 None:intergenic
AGGAAATTAGGTTTGATATT+AGG 0.152951 1.4:-88208568 None:intergenic
TGAGATTAAAAGCAATAAAT+TGG 0.191161 1.4:+88209575 MS.gene90789:CDS
TAGTCACCACCTCCATAATT+AGG 0.203590 1.4:-88209138 None:intergenic
GGAAATTAGGTTTGATATTA+GGG 0.217644 1.4:-88208567 None:intergenic
TGGTAACCAAGAATATTATT+TGG 0.220572 1.4:-88208697 None:intergenic
ACTATTCCAAATAATATTCT+TGG 0.229684 1.4:+88208691 MS.gene90789:CDS
GAGATGATTTACCCTAATTA+TGG 0.281017 1.4:+88209126 MS.gene90789:CDS
GGGTTCTGAAATTTCATGTT+AGG 0.308757 1.4:-88208547 None:intergenic
TTCGTCCCGGCTTGGAATTA+AGG 0.311625 1.4:-88208588 None:intergenic
CAGCCTAATCAAACCCTTCA+TGG 0.312973 1.4:-88208989 None:intergenic
GGCTTGGAATTAAGGAAATT+AGG 0.314913 1.4:-88208580 None:intergenic
TTCTTAATGGAGAGGGAGTT+AGG 0.317672 1.4:+88209249 MS.gene90789:CDS
TTTCTTAGCACGAATAATAA+AGG 0.324256 1.4:-88208833 None:intergenic
GAATATTATTTGGAATAGTT+TGG 0.330986 1.4:-88208687 None:intergenic
GTCTCAACAGCAGCTTCCTC+TGG 0.346933 1.4:+88208522 MS.gene90789:CDS
AAGCGAGGTGGTTTCAAATC+AGG 0.354951 1.4:+88209551 MS.gene90789:CDS
GAGTGGGGTGTGGATGGTTA+CGG 0.357631 1.4:+88208964 MS.gene90789:CDS
GAAGTAATAATAACAATAAC+TGG 0.359197 1.4:+88208608 MS.gene90789:CDS
ATAATAATGTCTTAGAGAAT+AGG 0.363278 1.4:+88209160 MS.gene90789:CDS
GTTGTTGTTGCTGCTGAGAT+TGG 0.364305 1.4:-88208390 None:intergenic
GTCTCCTTCTAGGGAGATGT+TGG 0.372087 1.4:+88208924 MS.gene90789:CDS
GGATTCTCATATAGCACAAT+TGG 0.387143 1.4:+88209194 MS.gene90789:CDS
CAACAATGTTTGACAGATGA+AGG 0.392386 1.4:+88209663 MS.gene90789:CDS
TCATCTGAGGATTCATCATC+TGG 0.393917 1.4:-88208333 None:intergenic
AGTGGGGTGTGGATGGTTAC+GGG 0.394300 1.4:+88208965 MS.gene90789:CDS
GCGACAAGCGCAAAGATATT+AGG 0.394743 1.4:+88208647 MS.gene90789:CDS
TCCCTAGAAGGAGACAAAAT+AGG 0.401100 1.4:-88208916 None:intergenic
TAGCATTAAACTTCTTCTTA+GGG 0.403904 1.4:-88208777 None:intergenic
TAATAATGTCTTAGAGAATA+GGG 0.407085 1.4:+88209161 MS.gene90789:CDS
ATTATTCGTGCTAAGAAATC+CGG 0.408112 1.4:+88208838 MS.gene90789:CDS
GGTCCATGAAGGGTTTGATT+AGG 0.415891 1.4:+88208986 MS.gene90789:CDS
TCTCAAACCTGCTCAAATCT+TGG 0.417553 1.4:-88209107 None:intergenic
TGATTTGAAACCACCTCGCT+TGG 0.418344 1.4:-88209549 None:intergenic
GAGATTAAAAGCAATAAATT+GGG 0.430395 1.4:+88209576 MS.gene90789:CDS
TCTCCCAACATCTCCCTAGA+AGG 0.431587 1.4:-88208928 None:intergenic
AGAGAATAGGGTAGATGATC+AGG 0.432490 1.4:+88209173 MS.gene90789:CDS
AGTCACCACCTCCATAATTA+GGG 0.439364 1.4:-88209137 None:intergenic
GAAGCAAATGAAAGTATAGA+TGG 0.442989 1.4:+88209771 MS.gene90789:CDS
ATAAAGGAAGTGGTATTCCT+AGG 0.443034 1.4:-88208817 None:intergenic
GGGTCTGATGTTCCTGTCAT+GGG 0.445316 1.4:+88209378 MS.gene90789:CDS
GATGAGGAGGATGGTGGTAG+TGG 0.447179 1.4:+88209033 MS.gene90789:CDS
TTATTTGGAATAGTTTGGTT+GGG 0.447922 1.4:-88208682 None:intergenic
GGAAGAGAATTTGACATTGA+GGG 0.450626 1.4:+88209218 MS.gene90789:CDS
AGGAAGAGAATTTGACATTG+AGG 0.457373 1.4:+88209217 MS.gene90789:CDS
GAATCCTCCTCCGCCTCCTC+AGG 0.458735 1.4:+88208357 MS.gene90789:CDS
ATGAGGAAGTGGTGGAGAAT+GGG 0.461656 1.4:+88209334 MS.gene90789:CDS
AGTGCAAGAATCAGATAGTT+GGG 0.464802 1.4:+88209814 MS.gene90789:CDS
TCTCCTTCTAGGGAGATGTT+GGG 0.468734 1.4:+88208925 MS.gene90789:CDS
GTGGTATTCCTAGGGGCATA+AGG 0.469092 1.4:-88208808 None:intergenic
ATTATTTGGAATAGTTTGGT+TGG 0.471669 1.4:-88208683 None:intergenic
GGCTTGACCAAGATTTGAGC+AGG 0.472253 1.4:+88209100 MS.gene90789:CDS
ATCCACACCCCACTCTTCCT+TGG 0.472431 1.4:-88208956 None:intergenic
TCTTAATGGAGAGGGAGTTA+GGG 0.473595 1.4:+88209250 MS.gene90789:CDS
ACTTTCATTTGCTTCTTCGT+CGG 0.476598 1.4:-88209763 None:intergenic
ATTATTACTTCGTCCCGGCT+TGG 0.487216 1.4:-88208596 None:intergenic
AATGAGGAAGTGGTGGAGAA+TGG 0.488145 1.4:+88209333 MS.gene90789:CDS
AACGGATAAATCATCATCTC+TGG 0.488542 1.4:-88209853 None:intergenic
GCGCAAAGATATTAGGAGAA+TGG 0.488843 1.4:+88208654 MS.gene90789:CDS
TAACTTAACAGCAACATCAT+TGG 0.490256 1.4:-88209466 None:intergenic
TAAAGGAAGTGGTATTCCTA+GGG 0.494535 1.4:-88208816 None:intergenic
ATTACCTGAGGAGGCGGAGG+AGG 0.497462 1.4:-88208361 None:intergenic
GAGTGCAAGAATCAGATAGT+TGG 0.497730 1.4:+88209813 MS.gene90789:CDS
AGGAACATGTGGAGGTGGAA+AGG 0.498763 1.4:+88209076 MS.gene90789:CDS
GTGGATATAATAACAAGGTT+TGG 0.501034 1.4:+88208500 MS.gene90789:CDS
GTTTCTTGAGAGGCAAAACC+AGG 0.501187 1.4:+88209293 MS.gene90789:CDS
GGAAGCACCGCGGGAGTCAC+AGG 0.503477 1.4:-88208889 None:intergenic
AGACATGGCCAAGGAAGAGT+GGG 0.504798 1.4:+88208948 MS.gene90789:CDS
CAATAACTGGAAGGGAAAGA+AGG 0.508608 1.4:+88208621 MS.gene90789:CDS
AAGGAAGAGTGGGGTGTGGA+TGG 0.511058 1.4:+88208958 MS.gene90789:CDS
GGGAGTTAGGGGATCTGCGA+AGG 0.512859 1.4:+88209262 MS.gene90789:CDS
CGGGTCATCATCGGAGGAGG+AGG 0.515742 1.4:-88208475 None:intergenic
GCTGTTAAGTTAGACAATGA+TGG 0.518940 1.4:+88209477 MS.gene90789:CDS
TAGGGAGATGTTGGGAGACA+TGG 0.529357 1.4:+88208933 MS.gene90789:CDS
AGCACGAATAATAAAGGAAG+TGG 0.529863 1.4:-88208827 None:intergenic
ATTTACCCTAATTATGGAGG+TGG 0.532452 1.4:+88209132 MS.gene90789:CDS
TTGTTCTCAATTCCCATGAC+AGG 0.534410 1.4:-88209390 None:intergenic
GGATGGTTACGGGTCCATGA+AGG 0.537436 1.4:+88208975 MS.gene90789:CDS
TAATTTCCTTAATTCCAAGC+CGG 0.537774 1.4:+88208582 MS.gene90789:CDS
GGGGTCTGATGTTCCTGTCA+TGG 0.540719 1.4:+88209377 MS.gene90789:CDS
TTGTTATTATTACTTCGTCC+CGG 0.541685 1.4:-88208601 None:intergenic
AATTTCCTTAATTCCAAGCC+GGG 0.542484 1.4:+88208583 MS.gene90789:CDS
AAAAGCAATAAATTGGGAGG+TGG 0.545853 1.4:+88209582 MS.gene90789:CDS
TTAATTACCTGAGGAGGCGG+AGG 0.547707 1.4:-88208364 None:intergenic
TAACATCTTCAACCACAGCC+TGG 0.547796 1.4:-88209311 None:intergenic
GATGGTTACGGGTCCATGAA+GGG 0.550466 1.4:+88208976 MS.gene90789:CDS
ACCGCGGGAGTCACAGGACA+AGG 0.556762 1.4:-88208883 None:intergenic
TATCCACCACGGGTCATCAT+CGG 0.556989 1.4:-88208484 None:intergenic
TTCTCATATAGCACAATTGG+AGG 0.557751 1.4:+88209197 MS.gene90789:CDS
CCACGGGTCATCATCGGAGG+AGG 0.558013 1.4:-88208478 None:intergenic
GAAGGAGACAAAATAGGTGT+AGG 0.563617 1.4:-88208910 None:intergenic
TGAGATGGTTGATTCAATGC+TGG 0.564051 1.4:+88209416 MS.gene90789:CDS
GATTTGCTCCTTATGCCCCT+AGG 0.564214 1.4:+88208800 MS.gene90789:CDS
AATAATAACAATAACTGGAA+GGG 0.564282 1.4:+88208613 MS.gene90789:CDS
TTGTTAATTACCTGAGGAGG+CGG 0.568063 1.4:-88208367 None:intergenic
TGTGGAGGAACATGTGGAGG+TGG 0.568876 1.4:+88209071 MS.gene90789:CDS
ATGAGGAGGATGGTGGTAGT+GGG 0.569684 1.4:+88209034 MS.gene90789:CDS
TGAGAGGCAAAACCAGGCTG+TGG 0.571139 1.4:+88209299 MS.gene90789:CDS
GAGACATGGCCAAGGAAGAG+TGG 0.574369 1.4:+88208947 MS.gene90789:CDS
GGCCAAGGAAGAGTGGGGTG+TGG 0.578600 1.4:+88208954 MS.gene90789:CDS
CTTGTTATTATATCCACCAC+GGG 0.580308 1.4:-88208494 None:intergenic
GGAGGATGCTGTTTCTTGAG+AGG 0.580553 1.4:+88209283 MS.gene90789:CDS
TGAAGATGTTAATGAGGAAG+TGG 0.582378 1.4:+88209323 MS.gene90789:CDS
TCATCATCTTCATCTGCGGT+TGG 0.583649 1.4:-88208432 None:intergenic
GGTCTGATAATGAAAGTGAA+GGG 0.586263 1.4:+88209355 MS.gene90789:CDS
GTTGATTCAATGCTGGAAAG+TGG 0.587761 1.4:+88209423 MS.gene90789:CDS
TAATAATAACAATAACTGGA+AGG 0.588600 1.4:+88208612 MS.gene90789:CDS
TGGTTGTTAATTACCTGAGG+AGG 0.589919 1.4:-88208370 None:intergenic
CTTAATGGAGAGGGAGTTAG+GGG 0.592459 1.4:+88209251 MS.gene90789:CDS
GATTGTAACTCGTGAAGAGT+AGG 0.597765 1.4:-88208724 None:intergenic
GGGTCTGATAATGAAAGTGA+AGG 0.598925 1.4:+88209354 MS.gene90789:CDS
AGTTAGGGGATCTGCGAAGG+AGG 0.600321 1.4:+88209265 MS.gene90789:CDS
AGATGTTAATGAGGAAGTGG+TGG 0.601396 1.4:+88209326 MS.gene90789:CDS
GAGTGATGTGGAGGAACATG+TGG 0.602651 1.4:+88209065 MS.gene90789:CDS
CTTTATGTTTGATGATGTGA+AGG 0.604414 1.4:+88209605 MS.gene90789:CDS
ATGATTTACCCTAATTATGG+AGG 0.605797 1.4:+88209129 MS.gene90789:CDS
CCTCCGATGATGACCCGTGG+TGG 0.609404 1.4:+88208481 MS.gene90789:CDS
TGTTCATGATGATGAAGATG+AGG 0.609691 1.4:+88209017 MS.gene90789:CDS
ACTCGTGAAGAGTAGGTGGT+TGG 0.610555 1.4:-88208717 None:intergenic
AATTGAGAACAATGTTGAGA+TGG 0.615362 1.4:+88209401 MS.gene90789:CDS
GATTGGTTGTTAATTACCTG+AGG 0.617500 1.4:-88208373 None:intergenic
ATAGGTGTAGGAAGCACCGC+GGG 0.617806 1.4:-88208898 None:intergenic
AACATGTGGAGGTGGAAAGG+AGG 0.618264 1.4:+88209079 MS.gene90789:CDS
CACGAGCGATGCAATACCAC+CGG 0.619944 1.4:-88208857 None:intergenic
TGAGTCATCATCTTCATCTG+CGG 0.622247 1.4:-88208436 None:intergenic
ATTAAAAGCAATAAATTGGG+AGG 0.623697 1.4:+88209579 MS.gene90789:CDS
GGAAGAGTCTGTTCCAAGCG+AGG 0.624493 1.4:+88209536 MS.gene90789:CDS
CGGCTTCAGCTACTGCGCAA+CGG 0.625416 1.4:-88209871 None:intergenic
TGGGTCGAGTGAGAGTGATG+TGG 0.627431 1.4:+88209053 MS.gene90789:CDS
AGATGGCTTAGTGAGTGAGA+CGG 0.627723 1.4:+88209788 MS.gene90789:CDS
CCGTGGTGGATATAATAACA+AGG 0.629257 1.4:+88208495 MS.gene90789:CDS
GGAGGAGGATTCATCATCTG+AGG 0.632835 1.4:-88208346 None:intergenic
GTCTGATAATGAAAGTGAAG+GGG 0.635873 1.4:+88209356 MS.gene90789:CDS
TGTAACTCGTGAAGAGTAGG+TGG 0.636079 1.4:-88208721 None:intergenic
TGATGATGTGAAGGAAGAGA+AGG 0.637450 1.4:+88209614 MS.gene90789:CDS
CCTCCTCCGATGATGACCCG+TGG 0.644215 1.4:+88208478 MS.gene90789:CDS
GATGATGAAGATGAGGAGGA+TGG 0.647257 1.4:+88209024 MS.gene90789:CDS
TTGATTCAATGCTGGAAAGT+GGG 0.647613 1.4:+88209424 MS.gene90789:CDS
GATGAAGATGAGGAGGATGG+TGG 0.648811 1.4:+88209027 MS.gene90789:CDS
CCACCACGGGTCATCATCGG+AGG 0.650472 1.4:-88208481 None:intergenic
AATTTCATGTTAGGATCCAG+AGG 0.650747 1.4:-88208538 None:intergenic
CCTTGTTATTATATCCACCA+CGG 0.653785 1.4:-88208495 None:intergenic
TGTGGTTGAAGATGTTAATG+AGG 0.653979 1.4:+88209317 MS.gene90789:CDS
CTTGTGAATCGAAAAGAGAG+TGG 0.654418 1.4:+88209705 MS.gene90789:CDS
GATGGAGTATCAGAAGCTGA+AGG 0.655345 1.4:+88209495 MS.gene90789:CDS
AGAGTCTGTTCCAAGCGAGG+TGG 0.657368 1.4:+88209539 MS.gene90789:CDS
TCTGATAATGAAAGTGAAGG+GGG 0.659594 1.4:+88209357 MS.gene90789:CDS
TGGGAGAAATGAAAACATTG+AGG 0.659944 1.4:+88209443 MS.gene90789:CDS
ACCTTGTCCTGTGACTCCCG+CGG 0.660411 1.4:+88208882 MS.gene90789:CDS
TCATGATGATGAAGATGAGG+AGG 0.669532 1.4:+88209020 MS.gene90789:CDS
ATTCGTGCTAAGAAATCCGG+TGG 0.675846 1.4:+88208841 MS.gene90789:CDS
TGATGTGGAGGAACATGTGG+AGG 0.677019 1.4:+88209068 MS.gene90789:CDS
AAAGGAAGTGGTATTCCTAG+GGG 0.695257 1.4:-88208815 None:intergenic
GTCGAGTGAGAGTGATGTGG+AGG 0.696796 1.4:+88209056 MS.gene90789:CDS
GATGTTGGGAGACATGGCCA+AGG 0.712349 1.4:+88208939 MS.gene90789:CDS
CTGATAATGAAAGTGAAGGG+GGG 0.728770 1.4:+88209358 MS.gene90789:CDS
AATAGGTGTAGGAAGCACCG+CGG 0.741680 1.4:-88208899 None:intergenic
GACATGGCCAAGGAAGAGTG+GGG 0.742081 1.4:+88208949 MS.gene90789:CDS
GGTTGGTGAGAGAGTAACTG+AGG 0.774421 1.4:-88208415 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAACAATAACTGGAA+GGG + chr1.4:88208613-88208632 MS.gene90789:CDS 20.0%
!! ACTATTCCAAATAATATTCT+TGG + chr1.4:88208691-88208710 MS.gene90789:CDS 20.0%
!! ATAATAATGTCTTAGAGAAT+AGG + chr1.4:88209160-88209179 MS.gene90789:CDS 20.0%
!! GAAGTAATAATAACAATAAC+TGG + chr1.4:88208608-88208627 MS.gene90789:CDS 20.0%
!! GAGATTAAAAGCAATAAATT+GGG + chr1.4:88209576-88209595 MS.gene90789:CDS 20.0%
!! TAATAATAACAATAACTGGA+AGG + chr1.4:88208612-88208631 MS.gene90789:CDS 20.0%
!! TAATAATGTCTTAGAGAATA+GGG + chr1.4:88209161-88209180 MS.gene90789:CDS 20.0%
!! TGAGATTAAAAGCAATAAAT+TGG + chr1.4:88209575-88209594 MS.gene90789:CDS 20.0%
!!! GAATATTATTTGGAATAGTT+TGG - chr1.4:88208690-88208709 None:intergenic 20.0%
! AGGAAATTAGGTTTGATATT+AGG - chr1.4:88208571-88208590 None:intergenic 25.0%
! ATTAAAAGCAATAAATTGGG+AGG + chr1.4:88209579-88209598 MS.gene90789:CDS 25.0%
! GGAAATTAGGTTTGATATTA+GGG - chr1.4:88208570-88208589 None:intergenic 25.0%
! TAGCATTAAACTTCTTCTTA+GGG - chr1.4:88208780-88208799 None:intergenic 25.0%
! TGGTAACCAAGAATATTATT+TGG - chr1.4:88208700-88208719 None:intergenic 25.0%
! TTTCTTAGCACGAATAATAA+AGG - chr1.4:88208836-88208855 None:intergenic 25.0%
!! ATTATTTGGAATAGTTTGGT+TGG - chr1.4:88208686-88208705 None:intergenic 25.0%
!! TTATTTGGAATAGTTTGGTT+GGG - chr1.4:88208685-88208704 None:intergenic 25.0%
AATTGAGAACAATGTTGAGA+TGG + chr1.4:88209401-88209420 MS.gene90789:CDS 30.0%
ATGATTTACCCTAATTATGG+AGG + chr1.4:88209129-88209148 MS.gene90789:CDS 30.0%
ATTATTCGTGCTAAGAAATC+CGG + chr1.4:88208838-88208857 MS.gene90789:CDS 30.0%
CTAGCATTAAACTTCTTCTT+AGG - chr1.4:88208781-88208800 None:intergenic 30.0%
GAGATGATTTACCCTAATTA+TGG + chr1.4:88209126-88209145 MS.gene90789:CDS 30.0%
GTGGATATAATAACAAGGTT+TGG + chr1.4:88208500-88208519 MS.gene90789:CDS 30.0%
TAACTTAACAGCAACATCAT+TGG - chr1.4:88209469-88209488 None:intergenic 30.0%
TAATTTCCTTAATTCCAAGC+CGG + chr1.4:88208582-88208601 MS.gene90789:CDS 30.0%
! GAAGCAAATGAAAGTATAGA+TGG + chr1.4:88209771-88209790 MS.gene90789:CDS 30.0%
! TTGTTATTATTACTTCGTCC+CGG - chr1.4:88208604-88208623 None:intergenic 30.0%
!! CTTTATGTTTGATGATGTGA+AGG + chr1.4:88209605-88209624 MS.gene90789:CDS 30.0%
AAAAGCAATAAATTGGGAGG+TGG + chr1.4:88209582-88209601 MS.gene90789:CDS 35.0%
AACGGATAAATCATCATCTC+TGG - chr1.4:88209856-88209875 None:intergenic 35.0%
AATTTCATGTTAGGATCCAG+AGG - chr1.4:88208541-88208560 None:intergenic 35.0%
AATTTCCTTAATTCCAAGCC+GGG + chr1.4:88208583-88208602 MS.gene90789:CDS 35.0%
ACTTTCATTTGCTTCTTCGT+CGG - chr1.4:88209766-88209785 None:intergenic 35.0%
AGCACGAATAATAAAGGAAG+TGG - chr1.4:88208830-88208849 None:intergenic 35.0%
AGGAAGAGAATTTGACATTG+AGG + chr1.4:88209217-88209236 MS.gene90789:CDS 35.0%
AGTGCAAGAATCAGATAGTT+GGG + chr1.4:88209814-88209833 MS.gene90789:CDS 35.0%
ATAAAGGAAGTGGTATTCCT+AGG - chr1.4:88208820-88208839 None:intergenic 35.0%
ATTTACCCTAATTATGGAGG+TGG + chr1.4:88209132-88209151 MS.gene90789:CDS 35.0%
CAACAATGTTTGACAGATGA+AGG + chr1.4:88209663-88209682 MS.gene90789:CDS 35.0%
GCTGTTAAGTTAGACAATGA+TGG + chr1.4:88209477-88209496 MS.gene90789:CDS 35.0%
GGAAGAGAATTTGACATTGA+GGG + chr1.4:88209218-88209237 MS.gene90789:CDS 35.0%
GGATTCTCATATAGCACAAT+TGG + chr1.4:88209194-88209213 MS.gene90789:CDS 35.0%
GGCTTGGAATTAAGGAAATT+AGG - chr1.4:88208583-88208602 None:intergenic 35.0%
TAAAGGAAGTGGTATTCCTA+GGG - chr1.4:88208819-88208838 None:intergenic 35.0%
TGAAGATGTTAATGAGGAAG+TGG + chr1.4:88209323-88209342 MS.gene90789:CDS 35.0%
TGGGAGAAATGAAAACATTG+AGG + chr1.4:88209443-88209462 MS.gene90789:CDS 35.0%
TGTGGTTGAAGATGTTAATG+AGG + chr1.4:88209317-88209336 MS.gene90789:CDS 35.0%
TTCTCATATAGCACAATTGG+AGG + chr1.4:88209197-88209216 MS.gene90789:CDS 35.0%
TTGATTCAATGCTGGAAAGT+GGG + chr1.4:88209424-88209443 MS.gene90789:CDS 35.0%
! ACCTATTTTGTCTCCTTCTA+GGG + chr1.4:88208915-88208934 MS.gene90789:CDS 35.0%
! ATTCACAAGATCGTTTTCCT+TGG - chr1.4:88209694-88209713 None:intergenic 35.0%
! GATTGGTTGTTAATTACCTG+AGG - chr1.4:88208376-88208395 None:intergenic 35.0%
! GGTCTGATAATGAAAGTGAA+GGG + chr1.4:88209355-88209374 MS.gene90789:CDS 35.0%
! GTCTGATAATGAAAGTGAAG+GGG + chr1.4:88209356-88209375 MS.gene90789:CDS 35.0%
! TCTGATAATGAAAGTGAAGG+GGG + chr1.4:88209357-88209376 MS.gene90789:CDS 35.0%
! TGTTCATGATGATGAAGATG+AGG + chr1.4:88209017-88209036 MS.gene90789:CDS 35.0%
!! CCTTGTTATTATATCCACCA+CGG - chr1.4:88208498-88208517 None:intergenic 35.0%
!! CTTGTTATTATATCCACCAC+GGG - chr1.4:88208497-88208516 None:intergenic 35.0%
!! GGGTTCTGAAATTTCATGTT+AGG - chr1.4:88208550-88208569 None:intergenic 35.0%
!!! AGGTGTCGATGATGTTTTTA+TGG + chr1.4:88209515-88209534 MS.gene90789:CDS 35.0%
AAAGGAAGTGGTATTCCTAG+GGG - chr1.4:88208818-88208837 None:intergenic 40.0%
AGAGAATAGGGTAGATGATC+AGG + chr1.4:88209173-88209192 MS.gene90789:CDS 40.0%
AGATGTTAATGAGGAAGTGG+TGG + chr1.4:88209326-88209345 MS.gene90789:CDS 40.0%
AGTCACCACCTCCATAATTA+GGG - chr1.4:88209140-88209159 None:intergenic 40.0%
CAATAACTGGAAGGGAAAGA+AGG + chr1.4:88208621-88208640 MS.gene90789:CDS 40.0%
CTTGTGAATCGAAAAGAGAG+TGG + chr1.4:88209705-88209724 MS.gene90789:CDS 40.0%
GAAGGAGACAAAATAGGTGT+AGG - chr1.4:88208913-88208932 None:intergenic 40.0%
GAGTGCAAGAATCAGATAGT+TGG + chr1.4:88209813-88209832 MS.gene90789:CDS 40.0%
GATTGTAACTCGTGAAGAGT+AGG - chr1.4:88208727-88208746 None:intergenic 40.0%
GCGCAAAGATATTAGGAGAA+TGG + chr1.4:88208654-88208673 MS.gene90789:CDS 40.0%
TAGTCACCACCTCCATAATT+AGG - chr1.4:88209141-88209160 None:intergenic 40.0%
TCATCTGAGGATTCATCATC+TGG - chr1.4:88208336-88208355 None:intergenic 40.0%
TCCCTAGAAGGAGACAAAAT+AGG - chr1.4:88208919-88208938 None:intergenic 40.0%
TCTCAAACCTGCTCAAATCT+TGG - chr1.4:88209110-88209129 None:intergenic 40.0%
TCTTAATGGAGAGGGAGTTA+GGG + chr1.4:88209250-88209269 MS.gene90789:CDS 40.0%
TGAGTCATCATCTTCATCTG+CGG - chr1.4:88208439-88208458 None:intergenic 40.0%
TGGTTGTTAATTACCTGAGG+AGG - chr1.4:88208373-88208392 None:intergenic 40.0%
TTCTTAATGGAGAGGGAGTT+AGG + chr1.4:88209249-88209268 MS.gene90789:CDS 40.0%
TTGTTAATTACCTGAGGAGG+CGG - chr1.4:88208370-88208389 None:intergenic 40.0%
TTGTTCTCAATTCCCATGAC+AGG - chr1.4:88209393-88209412 None:intergenic 40.0%
! AGCGTCTTTTCTTAATGGAG+AGG + chr1.4:88209241-88209260 MS.gene90789:CDS 40.0%
! CACCTATTTTGTCTCCTTCT+AGG + chr1.4:88208914-88208933 MS.gene90789:CDS 40.0%
! CTGATAATGAAAGTGAAGGG+GGG + chr1.4:88209358-88209377 MS.gene90789:CDS 40.0%
! GCGTCTTTTCTTAATGGAGA+GGG + chr1.4:88209242-88209261 MS.gene90789:CDS 40.0%
! GGGTCTGATAATGAAAGTGA+AGG + chr1.4:88209354-88209373 MS.gene90789:CDS 40.0%
! GTTGATTCAATGCTGGAAAG+TGG + chr1.4:88209423-88209442 MS.gene90789:CDS 40.0%
! TCATGATGATGAAGATGAGG+AGG + chr1.4:88209020-88209039 MS.gene90789:CDS 40.0%
! TGAGATGGTTGATTCAATGC+TGG + chr1.4:88209416-88209435 MS.gene90789:CDS 40.0%
! TGATGATGTGAAGGAAGAGA+AGG + chr1.4:88209614-88209633 MS.gene90789:CDS 40.0%
!! CCGTGGTGGATATAATAACA+AGG + chr1.4:88208495-88208514 MS.gene90789:CDS 40.0%
AAGCGAGGTGGTTTCAAATC+AGG + chr1.4:88209551-88209570 MS.gene90789:CDS 45.0%
AGATGGCTTAGTGAGTGAGA+CGG + chr1.4:88209788-88209807 MS.gene90789:CDS 45.0%
ATTATTACTTCGTCCCGGCT+TGG - chr1.4:88208599-88208618 None:intergenic 45.0%
ATTCGTGCTAAGAAATCCGG+TGG + chr1.4:88208841-88208860 MS.gene90789:CDS 45.0%
CAGCCTAATCAAACCCTTCA+TGG - chr1.4:88208992-88209011 None:intergenic 45.0%
CTTAATGGAGAGGGAGTTAG+GGG + chr1.4:88209251-88209270 MS.gene90789:CDS 45.0%
GATGATGAAGATGAGGAGGA+TGG + chr1.4:88209024-88209043 MS.gene90789:CDS 45.0%
GCGACAAGCGCAAAGATATT+AGG + chr1.4:88208647-88208666 MS.gene90789:CDS 45.0%
GGTCCATGAAGGGTTTGATT+AGG + chr1.4:88208986-88209005 MS.gene90789:CDS 45.0%
GTTTCTTGAGAGGCAAAACC+AGG + chr1.4:88209293-88209312 MS.gene90789:CDS 45.0%
TAACATCTTCAACCACAGCC+TGG - chr1.4:88209314-88209333 None:intergenic 45.0%
TCATCATCTTCATCTGCGGT+TGG - chr1.4:88208435-88208454 None:intergenic 45.0%
TGTAACTCGTGAAGAGTAGG+TGG - chr1.4:88208724-88208743 None:intergenic 45.0%
! AATGAGGAAGTGGTGGAGAA+TGG + chr1.4:88209333-88209352 MS.gene90789:CDS 45.0%
! ATGAGGAAGTGGTGGAGAAT+GGG + chr1.4:88209334-88209353 MS.gene90789:CDS 45.0%
! GACAGATGAAGGTTTTGCCA+AGG + chr1.4:88209674-88209693 MS.gene90789:CDS 45.0%
! GATGGAGTATCAGAAGCTGA+AGG + chr1.4:88209495-88209514 MS.gene90789:CDS 45.0%
! GTTGTTGTTGCTGCTGAGAT+TGG - chr1.4:88208393-88208412 None:intergenic 45.0%
! TCTCCTTCTAGGGAGATGTT+GGG + chr1.4:88208925-88208944 MS.gene90789:CDS 45.0%
! TGATTTGAAACCACCTCGCT+TGG - chr1.4:88209552-88209571 None:intergenic 45.0%
!!! GAGGGAGCGTCTTTTCTTAA+TGG + chr1.4:88209236-88209255 MS.gene90789:CDS 45.0%
AACATGTGGAGGTGGAAAGG+AGG + chr1.4:88209079-88209098 MS.gene90789:CDS 50.0%
ACTCGTGAAGAGTAGGTGGT+TGG - chr1.4:88208720-88208739 None:intergenic 50.0%
AGACATGGCCAAGGAAGAGT+GGG + chr1.4:88208948-88208967 MS.gene90789:CDS 50.0%
AGGAACATGTGGAGGTGGAA+AGG + chr1.4:88209076-88209095 MS.gene90789:CDS 50.0%
GAGTGATGTGGAGGAACATG+TGG + chr1.4:88209065-88209084 MS.gene90789:CDS 50.0%
GATGAAGATGAGGAGGATGG+TGG + chr1.4:88209027-88209046 MS.gene90789:CDS 50.0%
GATGGTTACGGGTCCATGAA+GGG + chr1.4:88208976-88208995 MS.gene90789:CDS 50.0%
GGAGGAGGATTCATCATCTG+AGG - chr1.4:88208349-88208368 None:intergenic 50.0%
GGCTTGACCAAGATTTGAGC+AGG + chr1.4:88209100-88209119 MS.gene90789:CDS 50.0%
GGGTCTGATGTTCCTGTCAT+GGG + chr1.4:88209378-88209397 MS.gene90789:CDS 50.0%
TAGGGAGATGTTGGGAGACA+TGG + chr1.4:88208933-88208952 MS.gene90789:CDS 50.0%
TATCCACCACGGGTCATCAT+CGG - chr1.4:88208487-88208506 None:intergenic 50.0%
TCTCCCAACATCTCCCTAGA+AGG - chr1.4:88208931-88208950 None:intergenic 50.0%
TGATGTGGAGGAACATGTGG+AGG + chr1.4:88209068-88209087 MS.gene90789:CDS 50.0%
TTAATTACCTGAGGAGGCGG+AGG - chr1.4:88208367-88208386 None:intergenic 50.0%
! ATGAGGAGGATGGTGGTAGT+GGG + chr1.4:88209034-88209053 MS.gene90789:CDS 50.0%
! GATTTGCTCCTTATGCCCCT+AGG + chr1.4:88208800-88208819 MS.gene90789:CDS 50.0%
! GTCTCCTTCTAGGGAGATGT+TGG + chr1.4:88208924-88208943 MS.gene90789:CDS 50.0%
! GTGGTATTCCTAGGGGCATA+AGG - chr1.4:88208811-88208830 None:intergenic 50.0%
!! AATAGGTGTAGGAAGCACCG+CGG - chr1.4:88208902-88208921 None:intergenic 50.0%
!! GGAGGATGCTGTTTCTTGAG+AGG + chr1.4:88209283-88209302 MS.gene90789:CDS 50.0%
!! GGTTGGTGAGAGAGTAACTG+AGG - chr1.4:88208418-88208437 None:intergenic 50.0%
!! TTCGTCCCGGCTTGGAATTA+AGG - chr1.4:88208591-88208610 None:intergenic 50.0%
AAGGAAGAGTGGGGTGTGGA+TGG + chr1.4:88208958-88208977 MS.gene90789:CDS 55.0%
AGAGTCTGTTCCAAGCGAGG+TGG + chr1.4:88209539-88209558 MS.gene90789:CDS 55.0%
AGTGGGGTGTGGATGGTTAC+GGG + chr1.4:88208965-88208984 MS.gene90789:CDS 55.0%
AGTTAGGGGATCTGCGAAGG+AGG + chr1.4:88209265-88209284 MS.gene90789:CDS 55.0%
ATCCACACCCCACTCTTCCT+TGG - chr1.4:88208959-88208978 None:intergenic 55.0%
CACGAGCGATGCAATACCAC+CGG - chr1.4:88208860-88208879 None:intergenic 55.0%
GACATGGCCAAGGAAGAGTG+GGG + chr1.4:88208949-88208968 MS.gene90789:CDS 55.0%
GAGACATGGCCAAGGAAGAG+TGG + chr1.4:88208947-88208966 MS.gene90789:CDS 55.0%
GAGTGGGGTGTGGATGGTTA+CGG + chr1.4:88208964-88208983 MS.gene90789:CDS 55.0%
GATGTTGGGAGACATGGCCA+AGG + chr1.4:88208939-88208958 MS.gene90789:CDS 55.0%
GGAAGAGTCTGTTCCAAGCG+AGG + chr1.4:88209536-88209555 MS.gene90789:CDS 55.0%
GGATGGTTACGGGTCCATGA+AGG + chr1.4:88208975-88208994 MS.gene90789:CDS 55.0%
GGGGTCTGATGTTCCTGTCA+TGG + chr1.4:88209377-88209396 MS.gene90789:CDS 55.0%
GTCGAGTGAGAGTGATGTGG+AGG + chr1.4:88209056-88209075 MS.gene90789:CDS 55.0%
GTCTCAACAGCAGCTTCCTC+TGG + chr1.4:88208522-88208541 MS.gene90789:CDS 55.0%
TGAGAGGCAAAACCAGGCTG+TGG + chr1.4:88209299-88209318 MS.gene90789:CDS 55.0%
TGGGTCGAGTGAGAGTGATG+TGG + chr1.4:88209053-88209072 MS.gene90789:CDS 55.0%
TGTGGAGGAACATGTGGAGG+TGG + chr1.4:88209071-88209090 MS.gene90789:CDS 55.0%
! GATGAGGAGGATGGTGGTAG+TGG + chr1.4:88209033-88209052 MS.gene90789:CDS 55.0%
!! ATAGGTGTAGGAAGCACCGC+GGG - chr1.4:88208901-88208920 None:intergenic 55.0%
ACCTTGTCCTGTGACTCCCG+CGG + chr1.4:88208882-88208901 MS.gene90789:CDS 60.0%
ATTACCTGAGGAGGCGGAGG+AGG - chr1.4:88208364-88208383 None:intergenic 60.0%
GGGAGTTAGGGGATCTGCGA+AGG + chr1.4:88209262-88209281 MS.gene90789:CDS 60.0%
ACCGCGGGAGTCACAGGACA+AGG - chr1.4:88208886-88208905 None:intergenic 65.0%
CCACCACGGGTCATCATCGG+AGG - chr1.4:88208484-88208503 None:intergenic 65.0%
CCACGGGTCATCATCGGAGG+AGG - chr1.4:88208481-88208500 None:intergenic 65.0%
CCTCCGATGATGACCCGTGG+TGG + chr1.4:88208481-88208500 MS.gene90789:CDS 65.0%
CCTCCTCCGATGATGACCCG+TGG + chr1.4:88208478-88208497 MS.gene90789:CDS 65.0%
CGGGTCATCATCGGAGGAGG+AGG - chr1.4:88208478-88208497 None:intergenic 65.0%
GAATCCTCCTCCGCCTCCTC+AGG + chr1.4:88208357-88208376 MS.gene90789:CDS 65.0%
GGCCAAGGAAGAGTGGGGTG+TGG + chr1.4:88208954-88208973 MS.gene90789:CDS 65.0%
!! GGAAGCACCGCGGGAGTCAC+AGG - chr1.4:88208892-88208911 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 88208298 88209884 88208298 ID=MS.gene90789
chr1.4 mRNA 88208298 88209884 88208298 ID=MS.gene90789.t1;Parent=MS.gene90789
chr1.4 exon 88208298 88209884 88208298 ID=MS.gene90789.t1.exon1;Parent=MS.gene90789.t1
chr1.4 CDS 88208298 88209884 88208298 ID=cds.MS.gene90789.t1;Parent=MS.gene90789.t1
Gene Sequence

>MS.gene90789

ATGAACGATCAATCTCAGATGATGATGAATTTGAACCAGATGATGAATCCTCAGATGATGAATCCTCCTCCGCCTCCTCAGGTAATTAACAACCAATCTCAGCAGCAACAACAACAACCTCAGTTACTCTCTCACCAACCGCAGATGAAGATGATGACTCAGAATCAACAACAGCTTCCTCCTCCTCCGATGATGACCCGTGGTGGATATAATAACAAGGTTTGGTCTCAACAGCAGCTTCCTCTGGATCCTAACATGAAATTTCAGAACCCTAATATCAAACCTAATTTCCTTAATTCCAAGCCGGGACGAAGTAATAATAACAATAACTGGAAGGGAAAGAAGGTTAGCGACAAGCGCAAAGATATTAGGAGAATGGAAAAACCCAACCAAACTATTCCAAATAATATTCTTGGTTACCAACCACCTACTCTTCACGAGTTACAATCTCAGAATCGTTTGAAAGCGCGTAAGTTTTACCCTAAGAAGAAGTTTAATGCTAGATTTGCTCCTTATGCCCCTAGGAATACCACTTCCTTTATTATTCGTGCTAAGAAATCCGGTGGTATTGCATCGCTCGTGTCACCTTGTCCTGTGACTCCCGCGGTGCTTCCTACACCTATTTTGTCTCCTTCTAGGGAGATGTTGGGAGACATGGCCAAGGAAGAGTGGGGTGTGGATGGTTACGGGTCCATGAAGGGTTTGATTAGGCTGAGAGATGTTCATGATGATGAAGATGAGGAGGATGGTGGTAGTGGGTCGAGTGAGAGTGATGTGGAGGAACATGTGGAGGTGGAAAGGAGGCTTGACCAAGATTTGAGCAGGTTTGAGATGATTTACCCTAATTATGGAGGTGGTGACTATAATAATGTCTTAGAGAATAGGGTAGATGATCAGGATTCTCATATAGCACAATTGGAGGAAGAGAATTTGACATTGAGGGAGCGTCTTTTCTTAATGGAGAGGGAGTTAGGGGATCTGCGAAGGAGGATGCTGTTTCTTGAGAGGCAAAACCAGGCTGTGGTTGAAGATGTTAATGAGGAAGTGGTGGAGAATGGGTCTGATAATGAAAGTGAAGGGGGGTCTGATGTTCCTGTCATGGGAATTGAGAACAATGTTGAGATGGTTGATTCAATGCTGGAAAGTGGGAGAAATGAAAACATTGAGGCCAATGATGTTGCTGTTAAGTTAGACAATGATGGAGTATCAGAAGCTGAAGGTGTCGATGATGTTTTTATGGAAGAGTCTGTTCCAAGCGAGGTGGTTTCAAATCAGGATGAGATTAAAAGCAATAAATTGGGAGGTGGCTTTATGTTTGATGATGTGAAGGAAGAGAAGGATAAGCAGAAGAACGAATTAGCTACACAACAATGTTTGACAGATGAAGGTTTTGCCAAGGAAAACGATCTTGTGAATCGAAAAGAGAGTGGCGATGAAATGATCGATAGAAATGACGAATTGAAAACCGACGAAGAAGCAAATGAAAGTATAGATGGCTTAGTGAGTGAGACGGATGAGTGCAAGAATCAGATAGTTGGGAAAAATTCAGAGACTGCCAGAGATGATGATTTATCCGTTGCGCAGTAG

Protein sequence

>MS.gene90789.t1

MNDQSQMMMNLNQMMNPQMMNPPPPPQVINNQSQQQQQQPQLLSHQPQMKMMTQNQQQLPPPPMMTRGGYNNKVWSQQQLPLDPNMKFQNPNIKPNFLNSKPGRSNNNNNWKGKKVSDKRKDIRRMEKPNQTIPNNILGYQPPTLHELQSQNRLKARKFYPKKKFNARFAPYAPRNTTSFIIRAKKSGGIASLVSPCPVTPAVLPTPILSPSREMLGDMAKEEWGVDGYGSMKGLIRLRDVHDDEDEEDGGSGSSESDVEEHVEVERRLDQDLSRFEMIYPNYGGGDYNNVLENRVDDQDSHIAQLEEENLTLRERLFLMERELGDLRRRMLFLERQNQAVVEDVNEEVVENGSDNESEGGSDVPVMGIENNVEMVDSMLESGRNENIEANDVAVKLDNDGVSEAEGVDDVFMEESVPSEVVSNQDEIKSNKLGGGFMFDDVKEEKDKQKNELATQQCLTDEGFAKENDLVNRKESGDEMIDRNDELKTDEEANESIDGLVSETDECKNQIVGKNSETARDDDLSVAQ