Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90789.t1 | XP_003592814.1 | 93.9 | 460 | 22 | 3 | 74 | 528 | 83 | 541 | 1.50E-197 | 699.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90789.t1 | G7IAX9 | 93.9 | 460 | 22 | 3 | 74 | 528 | 83 | 541 | 1.1e-197 | 699.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050105 | MS.gene90789 | 0.804128 | 2.51E-49 | -1.69E-46 |
MS.gene052056 | MS.gene90789 | -0.815273 | 1.01E-51 | -1.69E-46 |
MS.gene05216 | MS.gene90789 | 0.832321 | 1.01E-55 | -1.69E-46 |
MS.gene052675 | MS.gene90789 | 0.800901 | 1.16E-48 | -1.69E-46 |
MS.gene052677 | MS.gene90789 | 0.806977 | 6.33E-50 | -1.69E-46 |
MS.gene054479 | MS.gene90789 | 0.837423 | 5.24E-57 | -1.69E-46 |
MS.gene055701 | MS.gene90789 | 0.813162 | 2.94E-51 | -1.69E-46 |
MS.gene05595 | MS.gene90789 | 0.819089 | 1.39E-52 | -1.69E-46 |
MS.gene058223 | MS.gene90789 | -0.820073 | 8.32E-53 | -1.69E-46 |
MS.gene060011 | MS.gene90789 | 0.803309 | 3.71E-49 | -1.69E-46 |
MS.gene060850 | MS.gene90789 | 0.802593 | 5.21E-49 | -1.69E-46 |
MS.gene060851 | MS.gene90789 | 0.819155 | 1.35E-52 | -1.69E-46 |
MS.gene060852 | MS.gene90789 | 0.813539 | 2.43E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90789.t1 | MTR_1g116330 | 93.750 | 544 | 15 | 7 | 1 | 528 | 1 | 541 | 0.0 | 884 |
MS.gene90789.t1 | MTR_2g061360 | 55.981 | 209 | 74 | 5 | 155 | 359 | 80 | 274 | 6.39e-67 | 218 |
MS.gene90789.t1 | MTR_2g061290 | 56.284 | 183 | 67 | 5 | 157 | 335 | 81 | 254 | 9.70e-52 | 177 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90789.t1 | AT5G19900 | 51.089 | 505 | 160 | 22 | 1 | 461 | 1 | 462 | 2.52e-124 | 373 |
MS.gene90789.t1 | AT5G19900 | 51.089 | 505 | 160 | 22 | 1 | 461 | 1 | 462 | 2.52e-124 | 373 |
MS.gene90789.t1 | AT5G19900 | 51.089 | 505 | 160 | 22 | 1 | 461 | 1 | 462 | 2.52e-124 | 373 |
MS.gene90789.t1 | AT5G19900 | 51.089 | 505 | 160 | 22 | 1 | 461 | 1 | 462 | 2.52e-124 | 373 |
MS.gene90789.t1 | AT5G19900 | 51.089 | 505 | 160 | 22 | 1 | 461 | 1 | 462 | 2.52e-124 | 373 |
Find 159 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTAGCATTAAACTTCTTCTT+AGG | 0.137829 | 1.4:-88208778 | None:intergenic |
AGGAAATTAGGTTTGATATT+AGG | 0.152951 | 1.4:-88208568 | None:intergenic |
TGAGATTAAAAGCAATAAAT+TGG | 0.191161 | 1.4:+88209575 | MS.gene90789:CDS |
TAGTCACCACCTCCATAATT+AGG | 0.203590 | 1.4:-88209138 | None:intergenic |
GGAAATTAGGTTTGATATTA+GGG | 0.217644 | 1.4:-88208567 | None:intergenic |
TGGTAACCAAGAATATTATT+TGG | 0.220572 | 1.4:-88208697 | None:intergenic |
ACTATTCCAAATAATATTCT+TGG | 0.229684 | 1.4:+88208691 | MS.gene90789:CDS |
GAGATGATTTACCCTAATTA+TGG | 0.281017 | 1.4:+88209126 | MS.gene90789:CDS |
GGGTTCTGAAATTTCATGTT+AGG | 0.308757 | 1.4:-88208547 | None:intergenic |
TTCGTCCCGGCTTGGAATTA+AGG | 0.311625 | 1.4:-88208588 | None:intergenic |
CAGCCTAATCAAACCCTTCA+TGG | 0.312973 | 1.4:-88208989 | None:intergenic |
GGCTTGGAATTAAGGAAATT+AGG | 0.314913 | 1.4:-88208580 | None:intergenic |
TTCTTAATGGAGAGGGAGTT+AGG | 0.317672 | 1.4:+88209249 | MS.gene90789:CDS |
TTTCTTAGCACGAATAATAA+AGG | 0.324256 | 1.4:-88208833 | None:intergenic |
GAATATTATTTGGAATAGTT+TGG | 0.330986 | 1.4:-88208687 | None:intergenic |
GTCTCAACAGCAGCTTCCTC+TGG | 0.346933 | 1.4:+88208522 | MS.gene90789:CDS |
AAGCGAGGTGGTTTCAAATC+AGG | 0.354951 | 1.4:+88209551 | MS.gene90789:CDS |
GAGTGGGGTGTGGATGGTTA+CGG | 0.357631 | 1.4:+88208964 | MS.gene90789:CDS |
GAAGTAATAATAACAATAAC+TGG | 0.359197 | 1.4:+88208608 | MS.gene90789:CDS |
ATAATAATGTCTTAGAGAAT+AGG | 0.363278 | 1.4:+88209160 | MS.gene90789:CDS |
GTTGTTGTTGCTGCTGAGAT+TGG | 0.364305 | 1.4:-88208390 | None:intergenic |
GTCTCCTTCTAGGGAGATGT+TGG | 0.372087 | 1.4:+88208924 | MS.gene90789:CDS |
GGATTCTCATATAGCACAAT+TGG | 0.387143 | 1.4:+88209194 | MS.gene90789:CDS |
CAACAATGTTTGACAGATGA+AGG | 0.392386 | 1.4:+88209663 | MS.gene90789:CDS |
TCATCTGAGGATTCATCATC+TGG | 0.393917 | 1.4:-88208333 | None:intergenic |
AGTGGGGTGTGGATGGTTAC+GGG | 0.394300 | 1.4:+88208965 | MS.gene90789:CDS |
GCGACAAGCGCAAAGATATT+AGG | 0.394743 | 1.4:+88208647 | MS.gene90789:CDS |
TCCCTAGAAGGAGACAAAAT+AGG | 0.401100 | 1.4:-88208916 | None:intergenic |
TAGCATTAAACTTCTTCTTA+GGG | 0.403904 | 1.4:-88208777 | None:intergenic |
TAATAATGTCTTAGAGAATA+GGG | 0.407085 | 1.4:+88209161 | MS.gene90789:CDS |
ATTATTCGTGCTAAGAAATC+CGG | 0.408112 | 1.4:+88208838 | MS.gene90789:CDS |
GGTCCATGAAGGGTTTGATT+AGG | 0.415891 | 1.4:+88208986 | MS.gene90789:CDS |
TCTCAAACCTGCTCAAATCT+TGG | 0.417553 | 1.4:-88209107 | None:intergenic |
TGATTTGAAACCACCTCGCT+TGG | 0.418344 | 1.4:-88209549 | None:intergenic |
GAGATTAAAAGCAATAAATT+GGG | 0.430395 | 1.4:+88209576 | MS.gene90789:CDS |
TCTCCCAACATCTCCCTAGA+AGG | 0.431587 | 1.4:-88208928 | None:intergenic |
AGAGAATAGGGTAGATGATC+AGG | 0.432490 | 1.4:+88209173 | MS.gene90789:CDS |
AGTCACCACCTCCATAATTA+GGG | 0.439364 | 1.4:-88209137 | None:intergenic |
GAAGCAAATGAAAGTATAGA+TGG | 0.442989 | 1.4:+88209771 | MS.gene90789:CDS |
ATAAAGGAAGTGGTATTCCT+AGG | 0.443034 | 1.4:-88208817 | None:intergenic |
GGGTCTGATGTTCCTGTCAT+GGG | 0.445316 | 1.4:+88209378 | MS.gene90789:CDS |
GATGAGGAGGATGGTGGTAG+TGG | 0.447179 | 1.4:+88209033 | MS.gene90789:CDS |
TTATTTGGAATAGTTTGGTT+GGG | 0.447922 | 1.4:-88208682 | None:intergenic |
GGAAGAGAATTTGACATTGA+GGG | 0.450626 | 1.4:+88209218 | MS.gene90789:CDS |
AGGAAGAGAATTTGACATTG+AGG | 0.457373 | 1.4:+88209217 | MS.gene90789:CDS |
GAATCCTCCTCCGCCTCCTC+AGG | 0.458735 | 1.4:+88208357 | MS.gene90789:CDS |
ATGAGGAAGTGGTGGAGAAT+GGG | 0.461656 | 1.4:+88209334 | MS.gene90789:CDS |
AGTGCAAGAATCAGATAGTT+GGG | 0.464802 | 1.4:+88209814 | MS.gene90789:CDS |
TCTCCTTCTAGGGAGATGTT+GGG | 0.468734 | 1.4:+88208925 | MS.gene90789:CDS |
GTGGTATTCCTAGGGGCATA+AGG | 0.469092 | 1.4:-88208808 | None:intergenic |
ATTATTTGGAATAGTTTGGT+TGG | 0.471669 | 1.4:-88208683 | None:intergenic |
GGCTTGACCAAGATTTGAGC+AGG | 0.472253 | 1.4:+88209100 | MS.gene90789:CDS |
ATCCACACCCCACTCTTCCT+TGG | 0.472431 | 1.4:-88208956 | None:intergenic |
TCTTAATGGAGAGGGAGTTA+GGG | 0.473595 | 1.4:+88209250 | MS.gene90789:CDS |
ACTTTCATTTGCTTCTTCGT+CGG | 0.476598 | 1.4:-88209763 | None:intergenic |
ATTATTACTTCGTCCCGGCT+TGG | 0.487216 | 1.4:-88208596 | None:intergenic |
AATGAGGAAGTGGTGGAGAA+TGG | 0.488145 | 1.4:+88209333 | MS.gene90789:CDS |
AACGGATAAATCATCATCTC+TGG | 0.488542 | 1.4:-88209853 | None:intergenic |
GCGCAAAGATATTAGGAGAA+TGG | 0.488843 | 1.4:+88208654 | MS.gene90789:CDS |
TAACTTAACAGCAACATCAT+TGG | 0.490256 | 1.4:-88209466 | None:intergenic |
TAAAGGAAGTGGTATTCCTA+GGG | 0.494535 | 1.4:-88208816 | None:intergenic |
ATTACCTGAGGAGGCGGAGG+AGG | 0.497462 | 1.4:-88208361 | None:intergenic |
GAGTGCAAGAATCAGATAGT+TGG | 0.497730 | 1.4:+88209813 | MS.gene90789:CDS |
AGGAACATGTGGAGGTGGAA+AGG | 0.498763 | 1.4:+88209076 | MS.gene90789:CDS |
GTGGATATAATAACAAGGTT+TGG | 0.501034 | 1.4:+88208500 | MS.gene90789:CDS |
GTTTCTTGAGAGGCAAAACC+AGG | 0.501187 | 1.4:+88209293 | MS.gene90789:CDS |
GGAAGCACCGCGGGAGTCAC+AGG | 0.503477 | 1.4:-88208889 | None:intergenic |
AGACATGGCCAAGGAAGAGT+GGG | 0.504798 | 1.4:+88208948 | MS.gene90789:CDS |
CAATAACTGGAAGGGAAAGA+AGG | 0.508608 | 1.4:+88208621 | MS.gene90789:CDS |
AAGGAAGAGTGGGGTGTGGA+TGG | 0.511058 | 1.4:+88208958 | MS.gene90789:CDS |
GGGAGTTAGGGGATCTGCGA+AGG | 0.512859 | 1.4:+88209262 | MS.gene90789:CDS |
CGGGTCATCATCGGAGGAGG+AGG | 0.515742 | 1.4:-88208475 | None:intergenic |
GCTGTTAAGTTAGACAATGA+TGG | 0.518940 | 1.4:+88209477 | MS.gene90789:CDS |
TAGGGAGATGTTGGGAGACA+TGG | 0.529357 | 1.4:+88208933 | MS.gene90789:CDS |
AGCACGAATAATAAAGGAAG+TGG | 0.529863 | 1.4:-88208827 | None:intergenic |
ATTTACCCTAATTATGGAGG+TGG | 0.532452 | 1.4:+88209132 | MS.gene90789:CDS |
TTGTTCTCAATTCCCATGAC+AGG | 0.534410 | 1.4:-88209390 | None:intergenic |
GGATGGTTACGGGTCCATGA+AGG | 0.537436 | 1.4:+88208975 | MS.gene90789:CDS |
TAATTTCCTTAATTCCAAGC+CGG | 0.537774 | 1.4:+88208582 | MS.gene90789:CDS |
GGGGTCTGATGTTCCTGTCA+TGG | 0.540719 | 1.4:+88209377 | MS.gene90789:CDS |
TTGTTATTATTACTTCGTCC+CGG | 0.541685 | 1.4:-88208601 | None:intergenic |
AATTTCCTTAATTCCAAGCC+GGG | 0.542484 | 1.4:+88208583 | MS.gene90789:CDS |
AAAAGCAATAAATTGGGAGG+TGG | 0.545853 | 1.4:+88209582 | MS.gene90789:CDS |
TTAATTACCTGAGGAGGCGG+AGG | 0.547707 | 1.4:-88208364 | None:intergenic |
TAACATCTTCAACCACAGCC+TGG | 0.547796 | 1.4:-88209311 | None:intergenic |
GATGGTTACGGGTCCATGAA+GGG | 0.550466 | 1.4:+88208976 | MS.gene90789:CDS |
ACCGCGGGAGTCACAGGACA+AGG | 0.556762 | 1.4:-88208883 | None:intergenic |
TATCCACCACGGGTCATCAT+CGG | 0.556989 | 1.4:-88208484 | None:intergenic |
TTCTCATATAGCACAATTGG+AGG | 0.557751 | 1.4:+88209197 | MS.gene90789:CDS |
CCACGGGTCATCATCGGAGG+AGG | 0.558013 | 1.4:-88208478 | None:intergenic |
GAAGGAGACAAAATAGGTGT+AGG | 0.563617 | 1.4:-88208910 | None:intergenic |
TGAGATGGTTGATTCAATGC+TGG | 0.564051 | 1.4:+88209416 | MS.gene90789:CDS |
GATTTGCTCCTTATGCCCCT+AGG | 0.564214 | 1.4:+88208800 | MS.gene90789:CDS |
AATAATAACAATAACTGGAA+GGG | 0.564282 | 1.4:+88208613 | MS.gene90789:CDS |
TTGTTAATTACCTGAGGAGG+CGG | 0.568063 | 1.4:-88208367 | None:intergenic |
TGTGGAGGAACATGTGGAGG+TGG | 0.568876 | 1.4:+88209071 | MS.gene90789:CDS |
ATGAGGAGGATGGTGGTAGT+GGG | 0.569684 | 1.4:+88209034 | MS.gene90789:CDS |
TGAGAGGCAAAACCAGGCTG+TGG | 0.571139 | 1.4:+88209299 | MS.gene90789:CDS |
GAGACATGGCCAAGGAAGAG+TGG | 0.574369 | 1.4:+88208947 | MS.gene90789:CDS |
GGCCAAGGAAGAGTGGGGTG+TGG | 0.578600 | 1.4:+88208954 | MS.gene90789:CDS |
CTTGTTATTATATCCACCAC+GGG | 0.580308 | 1.4:-88208494 | None:intergenic |
GGAGGATGCTGTTTCTTGAG+AGG | 0.580553 | 1.4:+88209283 | MS.gene90789:CDS |
TGAAGATGTTAATGAGGAAG+TGG | 0.582378 | 1.4:+88209323 | MS.gene90789:CDS |
TCATCATCTTCATCTGCGGT+TGG | 0.583649 | 1.4:-88208432 | None:intergenic |
GGTCTGATAATGAAAGTGAA+GGG | 0.586263 | 1.4:+88209355 | MS.gene90789:CDS |
GTTGATTCAATGCTGGAAAG+TGG | 0.587761 | 1.4:+88209423 | MS.gene90789:CDS |
TAATAATAACAATAACTGGA+AGG | 0.588600 | 1.4:+88208612 | MS.gene90789:CDS |
TGGTTGTTAATTACCTGAGG+AGG | 0.589919 | 1.4:-88208370 | None:intergenic |
CTTAATGGAGAGGGAGTTAG+GGG | 0.592459 | 1.4:+88209251 | MS.gene90789:CDS |
GATTGTAACTCGTGAAGAGT+AGG | 0.597765 | 1.4:-88208724 | None:intergenic |
GGGTCTGATAATGAAAGTGA+AGG | 0.598925 | 1.4:+88209354 | MS.gene90789:CDS |
AGTTAGGGGATCTGCGAAGG+AGG | 0.600321 | 1.4:+88209265 | MS.gene90789:CDS |
AGATGTTAATGAGGAAGTGG+TGG | 0.601396 | 1.4:+88209326 | MS.gene90789:CDS |
GAGTGATGTGGAGGAACATG+TGG | 0.602651 | 1.4:+88209065 | MS.gene90789:CDS |
CTTTATGTTTGATGATGTGA+AGG | 0.604414 | 1.4:+88209605 | MS.gene90789:CDS |
ATGATTTACCCTAATTATGG+AGG | 0.605797 | 1.4:+88209129 | MS.gene90789:CDS |
CCTCCGATGATGACCCGTGG+TGG | 0.609404 | 1.4:+88208481 | MS.gene90789:CDS |
TGTTCATGATGATGAAGATG+AGG | 0.609691 | 1.4:+88209017 | MS.gene90789:CDS |
ACTCGTGAAGAGTAGGTGGT+TGG | 0.610555 | 1.4:-88208717 | None:intergenic |
AATTGAGAACAATGTTGAGA+TGG | 0.615362 | 1.4:+88209401 | MS.gene90789:CDS |
GATTGGTTGTTAATTACCTG+AGG | 0.617500 | 1.4:-88208373 | None:intergenic |
ATAGGTGTAGGAAGCACCGC+GGG | 0.617806 | 1.4:-88208898 | None:intergenic |
AACATGTGGAGGTGGAAAGG+AGG | 0.618264 | 1.4:+88209079 | MS.gene90789:CDS |
CACGAGCGATGCAATACCAC+CGG | 0.619944 | 1.4:-88208857 | None:intergenic |
TGAGTCATCATCTTCATCTG+CGG | 0.622247 | 1.4:-88208436 | None:intergenic |
ATTAAAAGCAATAAATTGGG+AGG | 0.623697 | 1.4:+88209579 | MS.gene90789:CDS |
GGAAGAGTCTGTTCCAAGCG+AGG | 0.624493 | 1.4:+88209536 | MS.gene90789:CDS |
CGGCTTCAGCTACTGCGCAA+CGG | 0.625416 | 1.4:-88209871 | None:intergenic |
TGGGTCGAGTGAGAGTGATG+TGG | 0.627431 | 1.4:+88209053 | MS.gene90789:CDS |
AGATGGCTTAGTGAGTGAGA+CGG | 0.627723 | 1.4:+88209788 | MS.gene90789:CDS |
CCGTGGTGGATATAATAACA+AGG | 0.629257 | 1.4:+88208495 | MS.gene90789:CDS |
GGAGGAGGATTCATCATCTG+AGG | 0.632835 | 1.4:-88208346 | None:intergenic |
GTCTGATAATGAAAGTGAAG+GGG | 0.635873 | 1.4:+88209356 | MS.gene90789:CDS |
TGTAACTCGTGAAGAGTAGG+TGG | 0.636079 | 1.4:-88208721 | None:intergenic |
TGATGATGTGAAGGAAGAGA+AGG | 0.637450 | 1.4:+88209614 | MS.gene90789:CDS |
CCTCCTCCGATGATGACCCG+TGG | 0.644215 | 1.4:+88208478 | MS.gene90789:CDS |
GATGATGAAGATGAGGAGGA+TGG | 0.647257 | 1.4:+88209024 | MS.gene90789:CDS |
TTGATTCAATGCTGGAAAGT+GGG | 0.647613 | 1.4:+88209424 | MS.gene90789:CDS |
GATGAAGATGAGGAGGATGG+TGG | 0.648811 | 1.4:+88209027 | MS.gene90789:CDS |
CCACCACGGGTCATCATCGG+AGG | 0.650472 | 1.4:-88208481 | None:intergenic |
AATTTCATGTTAGGATCCAG+AGG | 0.650747 | 1.4:-88208538 | None:intergenic |
CCTTGTTATTATATCCACCA+CGG | 0.653785 | 1.4:-88208495 | None:intergenic |
TGTGGTTGAAGATGTTAATG+AGG | 0.653979 | 1.4:+88209317 | MS.gene90789:CDS |
CTTGTGAATCGAAAAGAGAG+TGG | 0.654418 | 1.4:+88209705 | MS.gene90789:CDS |
GATGGAGTATCAGAAGCTGA+AGG | 0.655345 | 1.4:+88209495 | MS.gene90789:CDS |
AGAGTCTGTTCCAAGCGAGG+TGG | 0.657368 | 1.4:+88209539 | MS.gene90789:CDS |
TCTGATAATGAAAGTGAAGG+GGG | 0.659594 | 1.4:+88209357 | MS.gene90789:CDS |
TGGGAGAAATGAAAACATTG+AGG | 0.659944 | 1.4:+88209443 | MS.gene90789:CDS |
ACCTTGTCCTGTGACTCCCG+CGG | 0.660411 | 1.4:+88208882 | MS.gene90789:CDS |
TCATGATGATGAAGATGAGG+AGG | 0.669532 | 1.4:+88209020 | MS.gene90789:CDS |
ATTCGTGCTAAGAAATCCGG+TGG | 0.675846 | 1.4:+88208841 | MS.gene90789:CDS |
TGATGTGGAGGAACATGTGG+AGG | 0.677019 | 1.4:+88209068 | MS.gene90789:CDS |
AAAGGAAGTGGTATTCCTAG+GGG | 0.695257 | 1.4:-88208815 | None:intergenic |
GTCGAGTGAGAGTGATGTGG+AGG | 0.696796 | 1.4:+88209056 | MS.gene90789:CDS |
GATGTTGGGAGACATGGCCA+AGG | 0.712349 | 1.4:+88208939 | MS.gene90789:CDS |
CTGATAATGAAAGTGAAGGG+GGG | 0.728770 | 1.4:+88209358 | MS.gene90789:CDS |
AATAGGTGTAGGAAGCACCG+CGG | 0.741680 | 1.4:-88208899 | None:intergenic |
GACATGGCCAAGGAAGAGTG+GGG | 0.742081 | 1.4:+88208949 | MS.gene90789:CDS |
GGTTGGTGAGAGAGTAACTG+AGG | 0.774421 | 1.4:-88208415 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAATAACAATAACTGGAA+GGG | + | chr1.4:88208613-88208632 | MS.gene90789:CDS | 20.0% |
!! | ACTATTCCAAATAATATTCT+TGG | + | chr1.4:88208691-88208710 | MS.gene90789:CDS | 20.0% |
!! | ATAATAATGTCTTAGAGAAT+AGG | + | chr1.4:88209160-88209179 | MS.gene90789:CDS | 20.0% |
!! | GAAGTAATAATAACAATAAC+TGG | + | chr1.4:88208608-88208627 | MS.gene90789:CDS | 20.0% |
!! | GAGATTAAAAGCAATAAATT+GGG | + | chr1.4:88209576-88209595 | MS.gene90789:CDS | 20.0% |
!! | TAATAATAACAATAACTGGA+AGG | + | chr1.4:88208612-88208631 | MS.gene90789:CDS | 20.0% |
!! | TAATAATGTCTTAGAGAATA+GGG | + | chr1.4:88209161-88209180 | MS.gene90789:CDS | 20.0% |
!! | TGAGATTAAAAGCAATAAAT+TGG | + | chr1.4:88209575-88209594 | MS.gene90789:CDS | 20.0% |
!!! | GAATATTATTTGGAATAGTT+TGG | - | chr1.4:88208690-88208709 | None:intergenic | 20.0% |
! | AGGAAATTAGGTTTGATATT+AGG | - | chr1.4:88208571-88208590 | None:intergenic | 25.0% |
! | ATTAAAAGCAATAAATTGGG+AGG | + | chr1.4:88209579-88209598 | MS.gene90789:CDS | 25.0% |
! | GGAAATTAGGTTTGATATTA+GGG | - | chr1.4:88208570-88208589 | None:intergenic | 25.0% |
! | TAGCATTAAACTTCTTCTTA+GGG | - | chr1.4:88208780-88208799 | None:intergenic | 25.0% |
! | TGGTAACCAAGAATATTATT+TGG | - | chr1.4:88208700-88208719 | None:intergenic | 25.0% |
! | TTTCTTAGCACGAATAATAA+AGG | - | chr1.4:88208836-88208855 | None:intergenic | 25.0% |
!! | ATTATTTGGAATAGTTTGGT+TGG | - | chr1.4:88208686-88208705 | None:intergenic | 25.0% |
!! | TTATTTGGAATAGTTTGGTT+GGG | - | chr1.4:88208685-88208704 | None:intergenic | 25.0% |
AATTGAGAACAATGTTGAGA+TGG | + | chr1.4:88209401-88209420 | MS.gene90789:CDS | 30.0% | |
ATGATTTACCCTAATTATGG+AGG | + | chr1.4:88209129-88209148 | MS.gene90789:CDS | 30.0% | |
ATTATTCGTGCTAAGAAATC+CGG | + | chr1.4:88208838-88208857 | MS.gene90789:CDS | 30.0% | |
CTAGCATTAAACTTCTTCTT+AGG | - | chr1.4:88208781-88208800 | None:intergenic | 30.0% | |
GAGATGATTTACCCTAATTA+TGG | + | chr1.4:88209126-88209145 | MS.gene90789:CDS | 30.0% | |
GTGGATATAATAACAAGGTT+TGG | + | chr1.4:88208500-88208519 | MS.gene90789:CDS | 30.0% | |
TAACTTAACAGCAACATCAT+TGG | - | chr1.4:88209469-88209488 | None:intergenic | 30.0% | |
TAATTTCCTTAATTCCAAGC+CGG | + | chr1.4:88208582-88208601 | MS.gene90789:CDS | 30.0% | |
! | GAAGCAAATGAAAGTATAGA+TGG | + | chr1.4:88209771-88209790 | MS.gene90789:CDS | 30.0% |
! | TTGTTATTATTACTTCGTCC+CGG | - | chr1.4:88208604-88208623 | None:intergenic | 30.0% |
!! | CTTTATGTTTGATGATGTGA+AGG | + | chr1.4:88209605-88209624 | MS.gene90789:CDS | 30.0% |
AAAAGCAATAAATTGGGAGG+TGG | + | chr1.4:88209582-88209601 | MS.gene90789:CDS | 35.0% | |
AACGGATAAATCATCATCTC+TGG | - | chr1.4:88209856-88209875 | None:intergenic | 35.0% | |
AATTTCATGTTAGGATCCAG+AGG | - | chr1.4:88208541-88208560 | None:intergenic | 35.0% | |
AATTTCCTTAATTCCAAGCC+GGG | + | chr1.4:88208583-88208602 | MS.gene90789:CDS | 35.0% | |
ACTTTCATTTGCTTCTTCGT+CGG | - | chr1.4:88209766-88209785 | None:intergenic | 35.0% | |
AGCACGAATAATAAAGGAAG+TGG | - | chr1.4:88208830-88208849 | None:intergenic | 35.0% | |
AGGAAGAGAATTTGACATTG+AGG | + | chr1.4:88209217-88209236 | MS.gene90789:CDS | 35.0% | |
AGTGCAAGAATCAGATAGTT+GGG | + | chr1.4:88209814-88209833 | MS.gene90789:CDS | 35.0% | |
ATAAAGGAAGTGGTATTCCT+AGG | - | chr1.4:88208820-88208839 | None:intergenic | 35.0% | |
ATTTACCCTAATTATGGAGG+TGG | + | chr1.4:88209132-88209151 | MS.gene90789:CDS | 35.0% | |
CAACAATGTTTGACAGATGA+AGG | + | chr1.4:88209663-88209682 | MS.gene90789:CDS | 35.0% | |
GCTGTTAAGTTAGACAATGA+TGG | + | chr1.4:88209477-88209496 | MS.gene90789:CDS | 35.0% | |
GGAAGAGAATTTGACATTGA+GGG | + | chr1.4:88209218-88209237 | MS.gene90789:CDS | 35.0% | |
GGATTCTCATATAGCACAAT+TGG | + | chr1.4:88209194-88209213 | MS.gene90789:CDS | 35.0% | |
GGCTTGGAATTAAGGAAATT+AGG | - | chr1.4:88208583-88208602 | None:intergenic | 35.0% | |
TAAAGGAAGTGGTATTCCTA+GGG | - | chr1.4:88208819-88208838 | None:intergenic | 35.0% | |
TGAAGATGTTAATGAGGAAG+TGG | + | chr1.4:88209323-88209342 | MS.gene90789:CDS | 35.0% | |
TGGGAGAAATGAAAACATTG+AGG | + | chr1.4:88209443-88209462 | MS.gene90789:CDS | 35.0% | |
TGTGGTTGAAGATGTTAATG+AGG | + | chr1.4:88209317-88209336 | MS.gene90789:CDS | 35.0% | |
TTCTCATATAGCACAATTGG+AGG | + | chr1.4:88209197-88209216 | MS.gene90789:CDS | 35.0% | |
TTGATTCAATGCTGGAAAGT+GGG | + | chr1.4:88209424-88209443 | MS.gene90789:CDS | 35.0% | |
! | ACCTATTTTGTCTCCTTCTA+GGG | + | chr1.4:88208915-88208934 | MS.gene90789:CDS | 35.0% |
! | ATTCACAAGATCGTTTTCCT+TGG | - | chr1.4:88209694-88209713 | None:intergenic | 35.0% |
! | GATTGGTTGTTAATTACCTG+AGG | - | chr1.4:88208376-88208395 | None:intergenic | 35.0% |
! | GGTCTGATAATGAAAGTGAA+GGG | + | chr1.4:88209355-88209374 | MS.gene90789:CDS | 35.0% |
! | GTCTGATAATGAAAGTGAAG+GGG | + | chr1.4:88209356-88209375 | MS.gene90789:CDS | 35.0% |
! | TCTGATAATGAAAGTGAAGG+GGG | + | chr1.4:88209357-88209376 | MS.gene90789:CDS | 35.0% |
! | TGTTCATGATGATGAAGATG+AGG | + | chr1.4:88209017-88209036 | MS.gene90789:CDS | 35.0% |
!! | CCTTGTTATTATATCCACCA+CGG | - | chr1.4:88208498-88208517 | None:intergenic | 35.0% |
!! | CTTGTTATTATATCCACCAC+GGG | - | chr1.4:88208497-88208516 | None:intergenic | 35.0% |
!! | GGGTTCTGAAATTTCATGTT+AGG | - | chr1.4:88208550-88208569 | None:intergenic | 35.0% |
!!! | AGGTGTCGATGATGTTTTTA+TGG | + | chr1.4:88209515-88209534 | MS.gene90789:CDS | 35.0% |
AAAGGAAGTGGTATTCCTAG+GGG | - | chr1.4:88208818-88208837 | None:intergenic | 40.0% | |
AGAGAATAGGGTAGATGATC+AGG | + | chr1.4:88209173-88209192 | MS.gene90789:CDS | 40.0% | |
AGATGTTAATGAGGAAGTGG+TGG | + | chr1.4:88209326-88209345 | MS.gene90789:CDS | 40.0% | |
AGTCACCACCTCCATAATTA+GGG | - | chr1.4:88209140-88209159 | None:intergenic | 40.0% | |
CAATAACTGGAAGGGAAAGA+AGG | + | chr1.4:88208621-88208640 | MS.gene90789:CDS | 40.0% | |
CTTGTGAATCGAAAAGAGAG+TGG | + | chr1.4:88209705-88209724 | MS.gene90789:CDS | 40.0% | |
GAAGGAGACAAAATAGGTGT+AGG | - | chr1.4:88208913-88208932 | None:intergenic | 40.0% | |
GAGTGCAAGAATCAGATAGT+TGG | + | chr1.4:88209813-88209832 | MS.gene90789:CDS | 40.0% | |
GATTGTAACTCGTGAAGAGT+AGG | - | chr1.4:88208727-88208746 | None:intergenic | 40.0% | |
GCGCAAAGATATTAGGAGAA+TGG | + | chr1.4:88208654-88208673 | MS.gene90789:CDS | 40.0% | |
TAGTCACCACCTCCATAATT+AGG | - | chr1.4:88209141-88209160 | None:intergenic | 40.0% | |
TCATCTGAGGATTCATCATC+TGG | - | chr1.4:88208336-88208355 | None:intergenic | 40.0% | |
TCCCTAGAAGGAGACAAAAT+AGG | - | chr1.4:88208919-88208938 | None:intergenic | 40.0% | |
TCTCAAACCTGCTCAAATCT+TGG | - | chr1.4:88209110-88209129 | None:intergenic | 40.0% | |
TCTTAATGGAGAGGGAGTTA+GGG | + | chr1.4:88209250-88209269 | MS.gene90789:CDS | 40.0% | |
TGAGTCATCATCTTCATCTG+CGG | - | chr1.4:88208439-88208458 | None:intergenic | 40.0% | |
TGGTTGTTAATTACCTGAGG+AGG | - | chr1.4:88208373-88208392 | None:intergenic | 40.0% | |
TTCTTAATGGAGAGGGAGTT+AGG | + | chr1.4:88209249-88209268 | MS.gene90789:CDS | 40.0% | |
TTGTTAATTACCTGAGGAGG+CGG | - | chr1.4:88208370-88208389 | None:intergenic | 40.0% | |
TTGTTCTCAATTCCCATGAC+AGG | - | chr1.4:88209393-88209412 | None:intergenic | 40.0% | |
! | AGCGTCTTTTCTTAATGGAG+AGG | + | chr1.4:88209241-88209260 | MS.gene90789:CDS | 40.0% |
! | CACCTATTTTGTCTCCTTCT+AGG | + | chr1.4:88208914-88208933 | MS.gene90789:CDS | 40.0% |
! | CTGATAATGAAAGTGAAGGG+GGG | + | chr1.4:88209358-88209377 | MS.gene90789:CDS | 40.0% |
! | GCGTCTTTTCTTAATGGAGA+GGG | + | chr1.4:88209242-88209261 | MS.gene90789:CDS | 40.0% |
! | GGGTCTGATAATGAAAGTGA+AGG | + | chr1.4:88209354-88209373 | MS.gene90789:CDS | 40.0% |
! | GTTGATTCAATGCTGGAAAG+TGG | + | chr1.4:88209423-88209442 | MS.gene90789:CDS | 40.0% |
! | TCATGATGATGAAGATGAGG+AGG | + | chr1.4:88209020-88209039 | MS.gene90789:CDS | 40.0% |
! | TGAGATGGTTGATTCAATGC+TGG | + | chr1.4:88209416-88209435 | MS.gene90789:CDS | 40.0% |
! | TGATGATGTGAAGGAAGAGA+AGG | + | chr1.4:88209614-88209633 | MS.gene90789:CDS | 40.0% |
!! | CCGTGGTGGATATAATAACA+AGG | + | chr1.4:88208495-88208514 | MS.gene90789:CDS | 40.0% |
AAGCGAGGTGGTTTCAAATC+AGG | + | chr1.4:88209551-88209570 | MS.gene90789:CDS | 45.0% | |
AGATGGCTTAGTGAGTGAGA+CGG | + | chr1.4:88209788-88209807 | MS.gene90789:CDS | 45.0% | |
ATTATTACTTCGTCCCGGCT+TGG | - | chr1.4:88208599-88208618 | None:intergenic | 45.0% | |
ATTCGTGCTAAGAAATCCGG+TGG | + | chr1.4:88208841-88208860 | MS.gene90789:CDS | 45.0% | |
CAGCCTAATCAAACCCTTCA+TGG | - | chr1.4:88208992-88209011 | None:intergenic | 45.0% | |
CTTAATGGAGAGGGAGTTAG+GGG | + | chr1.4:88209251-88209270 | MS.gene90789:CDS | 45.0% | |
GATGATGAAGATGAGGAGGA+TGG | + | chr1.4:88209024-88209043 | MS.gene90789:CDS | 45.0% | |
GCGACAAGCGCAAAGATATT+AGG | + | chr1.4:88208647-88208666 | MS.gene90789:CDS | 45.0% | |
GGTCCATGAAGGGTTTGATT+AGG | + | chr1.4:88208986-88209005 | MS.gene90789:CDS | 45.0% | |
GTTTCTTGAGAGGCAAAACC+AGG | + | chr1.4:88209293-88209312 | MS.gene90789:CDS | 45.0% | |
TAACATCTTCAACCACAGCC+TGG | - | chr1.4:88209314-88209333 | None:intergenic | 45.0% | |
TCATCATCTTCATCTGCGGT+TGG | - | chr1.4:88208435-88208454 | None:intergenic | 45.0% | |
TGTAACTCGTGAAGAGTAGG+TGG | - | chr1.4:88208724-88208743 | None:intergenic | 45.0% | |
! | AATGAGGAAGTGGTGGAGAA+TGG | + | chr1.4:88209333-88209352 | MS.gene90789:CDS | 45.0% |
! | ATGAGGAAGTGGTGGAGAAT+GGG | + | chr1.4:88209334-88209353 | MS.gene90789:CDS | 45.0% |
! | GACAGATGAAGGTTTTGCCA+AGG | + | chr1.4:88209674-88209693 | MS.gene90789:CDS | 45.0% |
! | GATGGAGTATCAGAAGCTGA+AGG | + | chr1.4:88209495-88209514 | MS.gene90789:CDS | 45.0% |
! | GTTGTTGTTGCTGCTGAGAT+TGG | - | chr1.4:88208393-88208412 | None:intergenic | 45.0% |
! | TCTCCTTCTAGGGAGATGTT+GGG | + | chr1.4:88208925-88208944 | MS.gene90789:CDS | 45.0% |
! | TGATTTGAAACCACCTCGCT+TGG | - | chr1.4:88209552-88209571 | None:intergenic | 45.0% |
!!! | GAGGGAGCGTCTTTTCTTAA+TGG | + | chr1.4:88209236-88209255 | MS.gene90789:CDS | 45.0% |
AACATGTGGAGGTGGAAAGG+AGG | + | chr1.4:88209079-88209098 | MS.gene90789:CDS | 50.0% | |
ACTCGTGAAGAGTAGGTGGT+TGG | - | chr1.4:88208720-88208739 | None:intergenic | 50.0% | |
AGACATGGCCAAGGAAGAGT+GGG | + | chr1.4:88208948-88208967 | MS.gene90789:CDS | 50.0% | |
AGGAACATGTGGAGGTGGAA+AGG | + | chr1.4:88209076-88209095 | MS.gene90789:CDS | 50.0% | |
GAGTGATGTGGAGGAACATG+TGG | + | chr1.4:88209065-88209084 | MS.gene90789:CDS | 50.0% | |
GATGAAGATGAGGAGGATGG+TGG | + | chr1.4:88209027-88209046 | MS.gene90789:CDS | 50.0% | |
GATGGTTACGGGTCCATGAA+GGG | + | chr1.4:88208976-88208995 | MS.gene90789:CDS | 50.0% | |
GGAGGAGGATTCATCATCTG+AGG | - | chr1.4:88208349-88208368 | None:intergenic | 50.0% | |
GGCTTGACCAAGATTTGAGC+AGG | + | chr1.4:88209100-88209119 | MS.gene90789:CDS | 50.0% | |
GGGTCTGATGTTCCTGTCAT+GGG | + | chr1.4:88209378-88209397 | MS.gene90789:CDS | 50.0% | |
TAGGGAGATGTTGGGAGACA+TGG | + | chr1.4:88208933-88208952 | MS.gene90789:CDS | 50.0% | |
TATCCACCACGGGTCATCAT+CGG | - | chr1.4:88208487-88208506 | None:intergenic | 50.0% | |
TCTCCCAACATCTCCCTAGA+AGG | - | chr1.4:88208931-88208950 | None:intergenic | 50.0% | |
TGATGTGGAGGAACATGTGG+AGG | + | chr1.4:88209068-88209087 | MS.gene90789:CDS | 50.0% | |
TTAATTACCTGAGGAGGCGG+AGG | - | chr1.4:88208367-88208386 | None:intergenic | 50.0% | |
! | ATGAGGAGGATGGTGGTAGT+GGG | + | chr1.4:88209034-88209053 | MS.gene90789:CDS | 50.0% |
! | GATTTGCTCCTTATGCCCCT+AGG | + | chr1.4:88208800-88208819 | MS.gene90789:CDS | 50.0% |
! | GTCTCCTTCTAGGGAGATGT+TGG | + | chr1.4:88208924-88208943 | MS.gene90789:CDS | 50.0% |
! | GTGGTATTCCTAGGGGCATA+AGG | - | chr1.4:88208811-88208830 | None:intergenic | 50.0% |
!! | AATAGGTGTAGGAAGCACCG+CGG | - | chr1.4:88208902-88208921 | None:intergenic | 50.0% |
!! | GGAGGATGCTGTTTCTTGAG+AGG | + | chr1.4:88209283-88209302 | MS.gene90789:CDS | 50.0% |
!! | GGTTGGTGAGAGAGTAACTG+AGG | - | chr1.4:88208418-88208437 | None:intergenic | 50.0% |
!! | TTCGTCCCGGCTTGGAATTA+AGG | - | chr1.4:88208591-88208610 | None:intergenic | 50.0% |
AAGGAAGAGTGGGGTGTGGA+TGG | + | chr1.4:88208958-88208977 | MS.gene90789:CDS | 55.0% | |
AGAGTCTGTTCCAAGCGAGG+TGG | + | chr1.4:88209539-88209558 | MS.gene90789:CDS | 55.0% | |
AGTGGGGTGTGGATGGTTAC+GGG | + | chr1.4:88208965-88208984 | MS.gene90789:CDS | 55.0% | |
AGTTAGGGGATCTGCGAAGG+AGG | + | chr1.4:88209265-88209284 | MS.gene90789:CDS | 55.0% | |
ATCCACACCCCACTCTTCCT+TGG | - | chr1.4:88208959-88208978 | None:intergenic | 55.0% | |
CACGAGCGATGCAATACCAC+CGG | - | chr1.4:88208860-88208879 | None:intergenic | 55.0% | |
GACATGGCCAAGGAAGAGTG+GGG | + | chr1.4:88208949-88208968 | MS.gene90789:CDS | 55.0% | |
GAGACATGGCCAAGGAAGAG+TGG | + | chr1.4:88208947-88208966 | MS.gene90789:CDS | 55.0% | |
GAGTGGGGTGTGGATGGTTA+CGG | + | chr1.4:88208964-88208983 | MS.gene90789:CDS | 55.0% | |
GATGTTGGGAGACATGGCCA+AGG | + | chr1.4:88208939-88208958 | MS.gene90789:CDS | 55.0% | |
GGAAGAGTCTGTTCCAAGCG+AGG | + | chr1.4:88209536-88209555 | MS.gene90789:CDS | 55.0% | |
GGATGGTTACGGGTCCATGA+AGG | + | chr1.4:88208975-88208994 | MS.gene90789:CDS | 55.0% | |
GGGGTCTGATGTTCCTGTCA+TGG | + | chr1.4:88209377-88209396 | MS.gene90789:CDS | 55.0% | |
GTCGAGTGAGAGTGATGTGG+AGG | + | chr1.4:88209056-88209075 | MS.gene90789:CDS | 55.0% | |
GTCTCAACAGCAGCTTCCTC+TGG | + | chr1.4:88208522-88208541 | MS.gene90789:CDS | 55.0% | |
TGAGAGGCAAAACCAGGCTG+TGG | + | chr1.4:88209299-88209318 | MS.gene90789:CDS | 55.0% | |
TGGGTCGAGTGAGAGTGATG+TGG | + | chr1.4:88209053-88209072 | MS.gene90789:CDS | 55.0% | |
TGTGGAGGAACATGTGGAGG+TGG | + | chr1.4:88209071-88209090 | MS.gene90789:CDS | 55.0% | |
! | GATGAGGAGGATGGTGGTAG+TGG | + | chr1.4:88209033-88209052 | MS.gene90789:CDS | 55.0% |
!! | ATAGGTGTAGGAAGCACCGC+GGG | - | chr1.4:88208901-88208920 | None:intergenic | 55.0% |
ACCTTGTCCTGTGACTCCCG+CGG | + | chr1.4:88208882-88208901 | MS.gene90789:CDS | 60.0% | |
ATTACCTGAGGAGGCGGAGG+AGG | - | chr1.4:88208364-88208383 | None:intergenic | 60.0% | |
GGGAGTTAGGGGATCTGCGA+AGG | + | chr1.4:88209262-88209281 | MS.gene90789:CDS | 60.0% | |
ACCGCGGGAGTCACAGGACA+AGG | - | chr1.4:88208886-88208905 | None:intergenic | 65.0% | |
CCACCACGGGTCATCATCGG+AGG | - | chr1.4:88208484-88208503 | None:intergenic | 65.0% | |
CCACGGGTCATCATCGGAGG+AGG | - | chr1.4:88208481-88208500 | None:intergenic | 65.0% | |
CCTCCGATGATGACCCGTGG+TGG | + | chr1.4:88208481-88208500 | MS.gene90789:CDS | 65.0% | |
CCTCCTCCGATGATGACCCG+TGG | + | chr1.4:88208478-88208497 | MS.gene90789:CDS | 65.0% | |
CGGGTCATCATCGGAGGAGG+AGG | - | chr1.4:88208478-88208497 | None:intergenic | 65.0% | |
GAATCCTCCTCCGCCTCCTC+AGG | + | chr1.4:88208357-88208376 | MS.gene90789:CDS | 65.0% | |
GGCCAAGGAAGAGTGGGGTG+TGG | + | chr1.4:88208954-88208973 | MS.gene90789:CDS | 65.0% | |
!! | GGAAGCACCGCGGGAGTCAC+AGG | - | chr1.4:88208892-88208911 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 88208298 | 88209884 | 88208298 | ID=MS.gene90789 |
chr1.4 | mRNA | 88208298 | 88209884 | 88208298 | ID=MS.gene90789.t1;Parent=MS.gene90789 |
chr1.4 | exon | 88208298 | 88209884 | 88208298 | ID=MS.gene90789.t1.exon1;Parent=MS.gene90789.t1 |
chr1.4 | CDS | 88208298 | 88209884 | 88208298 | ID=cds.MS.gene90789.t1;Parent=MS.gene90789.t1 |
Gene Sequence |
Protein sequence |