AlfalfaGEDB | MS.gene91776

M. sativa cultivar XinJiangDaYe / MS.gene91776

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0055114
PFAM: PF03171.23 PF14226.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91776.t1	XP_013443827.1	95.7	373	16	0	1	373	1	373	1.10E-210	742.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91776.t1	Q9LTH7	52.6	367	166	5	12	373	3	366	4.3e-110	399.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91776.t1	A0A072TKB5	95.7	373	16	0	1	373	1	373	8.1e-211	742.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049549	MS.gene91776	0.802761	4.81E-49	-1.69E-46
MS.gene050338	MS.gene91776	0.816956	4.23E-52	-1.69E-46
MS.gene05104	MS.gene91776	0.815766	7.81E-52	-1.69E-46
MS.gene051138	MS.gene91776	0.82811	1.08E-54	-1.69E-46
MS.gene051422	MS.gene91776	0.805695	1.18E-49	-1.69E-46
MS.gene052606	MS.gene91776	0.805592	1.24E-49	-1.69E-46
MS.gene05470	MS.gene91776	-0.800181	1.63E-48	-1.69E-46
MS.gene055388	MS.gene91776	0.874152	8.44E-68	-1.69E-46
MS.gene05589	MS.gene91776	-0.801689	8.00E-49	-1.69E-46
MS.gene056590	MS.gene91776	0.812413	4.29E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91776.t1	MTR_8g006930	95.710	373	16	0	1	373	1	373	0.0	719
MS.gene91776.t1	MTR_7g078010	85.523	373	54	0	1	373	1	373	0.0	640
MS.gene91776.t1	MTR_4g119410	83.914	373	60	0	1	373	1	373	0.0	639
MS.gene91776.t1	MTR_7g056393	78.820	373	79	0	1	373	1	373	0.0	604
MS.gene91776.t1	MTR_7g056347	74.531	373	95	0	1	373	1	373	0.0	597
MS.gene91776.t1	MTR_8g063070	63.003	373	138	0	1	373	1	373	0.0	508
MS.gene91776.t1	MTR_1g093120	64.110	365	124	3	13	373	9	370	9.39e-178	498
MS.gene91776.t1	MTR_7g078010	85.417	288	42	0	1	288	1	288	1.62e-177	495
MS.gene91776.t1	MTR_4g024660	61.394	373	144	0	1	373	1	373	9.12e-177	496
MS.gene91776.t1	MTR_1g093110	62.873	369	129	3	11	373	8	374	1.39e-176	496

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91776.t1	AT5G59540	52.589	367	166	5	12	373	3	366	3.98e-138	398
MS.gene91776.t1	AT1G06620	51.667	360	170	2	15	373	9	365	2.71e-136	393
MS.gene91776.t1	AT1G06650	51.099	364	167	5	17	373	10	369	1.49e-132	384
MS.gene91776.t1	AT2G30840	51.923	364	166	5	15	373	3	362	3.03e-130	378
MS.gene91776.t1	AT2G30830	50.975	359	169	4	17	373	5	358	2.85e-129	375
MS.gene91776.t1	AT5G59530	48.611	360	179	4	17	373	8	364	2.11e-128	373
MS.gene91776.t1	AT1G06640	49.589	365	173	5	16	373	9	369	8.79e-126	367
MS.gene91776.t1	AT5G43450	50.418	359	170	3	18	373	9	362	4.43e-125	365
MS.gene91776.t1	AT2G30840	50.824	364	164	6	15	373	3	356	2.97e-124	362
MS.gene91776.t1	AT1G06645	48.774	367	170	6	16	373	22	379	3.74e-123	360

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Find 89 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTAGGTGTCAAAGGTT+TGG	0.437565	8.3:-81123789	MS.gene91776:CDS
AAACATAGGAGATCTTCTAC+AGG	0.605442	8.3:-81122843	MS.gene91776:intron
AAAGAGTTTGGTTGTGCTGA+AGG	0.454678	8.3:-81123046	MS.gene91776:CDS
AAAGGTTTATGGTCCTATTA+AGG	0.275771	8.3:-81122090	MS.gene91776:CDS
AAGCTCGCTACGGAAATTCT+CGG	0.481237	8.3:+81122149	None:intergenic
AAGTTCTTCATGAAGATAAA+TGG	0.210423	8.3:-81122901	MS.gene91776:CDS
AATACTTAACTTGGACTCAT+TGG	0.362533	8.3:+81123697	None:intergenic
AATCTTTGAGTTGTTGTCAG+AGG	0.567229	8.3:-81123095	MS.gene91776:CDS
AATGTATCTCTCCAATTAGC+AGG	0.471293	8.3:+81123416	None:intergenic
AATTAGTGGTTTCCTCTAAT+TGG	0.291896	8.3:+81123855	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTTCATTCTTCAAGACT+AGG	+	chr8.3:81123116-81123135	None:intergenic	30.0%
AAAGGTTTATGGTCCTATTA+AGG	-	chr8.3:81123756-81123775	MS.gene91776:CDS	30.0%
AATTAGTGGTTTCCTCTAAT+TGG	+	chr8.3:81121994-81122013	None:intergenic	30.0%
ATAGATGACCAATATACAAG+TGG	+	chr8.3:81123454-81123473	None:intergenic	30.0%
ATATATGAATTCTCCTCTCA+TGG	-	chr8.3:81122595-81122614	MS.gene91776:intron	30.0%
ATTTCATCCAAGACATTAAC+GGG	+	chr8.3:81122292-81122311	None:intergenic	30.0%
CATTTCATCCAAGACATTAA+CGG	+	chr8.3:81122293-81122312	None:intergenic	30.0%
CTTAAGAACCACTTGTATAT+TGG	-	chr8.3:81123443-81123462	MS.gene91776:CDS	30.0%
GAGCATAGTTGTAAATCTTA+TGG	+	chr8.3:81123348-81123367	None:intergenic	30.0%
GTAAATCTTATGGCATAGTA+AGG	+	chr8.3:81123338-81123357	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	81121971	81123897	81121971	ID=MS.gene91776
chr8.3	mRNA	81121971	81123897	81121971	ID=MS.gene91776.t1;Parent=MS.gene91776
chr8.3	exon	81123359	81123897	81123359	ID=MS.gene91776.t1.exon1;Parent=MS.gene91776.t1
chr8.3	CDS	81123359	81123897	81123359	ID=cds.MS.gene91776.t1;Parent=MS.gene91776.t1
chr8.3	exon	81122844	81123165	81122844	ID=MS.gene91776.t1.exon2;Parent=MS.gene91776.t1
chr8.3	CDS	81122844	81123165	81122844	ID=cds.MS.gene91776.t1;Parent=MS.gene91776.t1
chr8.3	exon	81121971	81122231	81121971	ID=MS.gene91776.t1.exon3;Parent=MS.gene91776.t1
chr8.3	CDS	81121971	81122231	81121971	ID=cds.MS.gene91776.t1;Parent=MS.gene91776.t1

Gene Sequence

>MS.gene91776

ATGGTGGTAAAAAACACAAACCAATTAGAGGAAACCACTAATTCCACTTATGATAGAGAAGTTGAAGTGAAAGCTTTTGATGATTCAAAAGTAGGTGTCAAAGGTTTGGTGGAGTCTGGGGTGTCGAAGATTCCACGCATGTTCCATACTGGGAAGTTGGAAATCTCCGAAAACTCAGCCAATGAGTCCAAGTTAAGTATTCCCATCATAGATCTCAAAGACATACACAACAATCCAGCTCGACGTGTAGAGGTAATTAGCCAAATTCAAAGTGCATGCCATGAGTGGGGATTTTTTCAGATAATTAATCATGAAATTCCCGTTAATGTCTTGGATGAAATGATTAATGGAATTAGTAAGTTTCACGAACAAGATGCTAATGTAAGAAAAGAGTTTTATACGCGGGATTTGAGCAAAAAAGTTATGTATTACTCTAATGTACTCTTGTTTAGTGGAAAACCTGCTAATTGGAGAGATACATTTGGTTTTGCTATTGCTCCTCATCCATTCAAACCAGATGAAGTGCCACCAATATGCAGGTAATGAACTCAATATTAATTTGGATTCTCACTCTCAAAATCATAATCAAATTTAATTGTATATCTAGGCCTTTATTTATGGATTATATATGAATTCTCCTCTCATGGAATCATGATCAAAAGTGCATTTCAGTAACAAAGCATGTACATTTGAATTATTATAGTCATTGATGGATTGATTGCATACTTGCAGAGATATTGTGATTGAATATTCACAGAAAATAAAGAATTTGGGTTTCAAAATCTTTGAGTTGTTGTCAGAGGCACTAGGATTTAACCCTTCTTACCTCAAAGAGTTTGGTTGTGCTGAAGGACTATTTACTTTGGGTCACTTCTATCCACCATGCCCTGAACCTGAATTAACTATGGGCTCGACCAAGCATACTGATAGTACTTTCATGACATTACTTCTACAAGACCAACTTGGCGGTCTTCAAGTTCTTCATGAAGATAAATGGGTCAACGTTCCTCCGGTACATGGATCTCTTGTTGTAAACATAGGAGATCTTCTACAGGTAAATATTCTAAGTCCAAATATAAGGCAGTCCAATTGCTTGTTTAGGTAAAAAATTTAGTATTAAAGAAACTTCTATGATTAGTTAGCCTAGTCTTGAAGAATGAAGTTTATCATTGCTTGAGCAAATACCACATTTATTTTTGTAAAACCCTTAATTTTGAAAGGCATCACATAAATTTTTACTTTAAGCTTAAAAATATGTTATGGCAGCCATATGATTCAAAACAATATTCTGTTAAAGGTTCTATTATTTTGATTGAACTCTTAATAATTATATAAAAACTGAGTAAGGCTTGTAGAAAGTATTCCCTTACTATGCCATAAGATTTACAACTATGCTCAAATATTATATTTTCCATGCTATGACTTTAAGACTTAAGTGATTCAAATAATCTCATTCAAACACTCTCTTCTTACTTAAGAACCACTTGTATATTGGTCATCTATTTGCTTGTATTTATTTGCAGAGAAAATAATGACTGATCCTTAGAATGTGATTATAGTGAACTGCAATTGTTGGCTAGAAACCATTTCTAAAAGCAAAATCATTGATTTCTTCATCATTGAAAGTTTGTCGTAATAGTTTTATCATTTTTTTATACTCTTGCAGCTTATCACAAATGACAAATTTGTAAGTGTTTTTCATCGAGTCTTAGCACAACACATAGGCCCGAGAATTTCCGTAGCGAGCTTCTTTCTGAATTCCCGTGACCCAATTGAAGGTACATCAAAGGTTTATGGTCCTATTAAGGAGCTGCTTTCAGAAGAAAACCCACCAATCTACAAAGACATTACCATAAAAGATTTCTTGGCGCATTTTTATGCAGAAGGCCTTAATGGAAAATCTTCCTTGGAGCCCTTCAAGTTGTGA

Protein sequence

>MS.gene91776.t1

MVVKNTNQLEETTNSTYDREVEVKAFDDSKVGVKGLVESGVSKIPRMFHTGKLEISENSANESKLSIPIIDLKDIHNNPARRVEVISQIQSACHEWGFFQIINHEIPVNVLDEMINGISKFHEQDANVRKEFYTRDLSKKVMYYSNVLLFSGKPANWRDTFGFAIAPHPFKPDEVPPICRDIVIEYSQKIKNLGFKIFELLSEALGFNPSYLKEFGCAEGLFTLGHFYPPCPEPELTMGSTKHTDSTFMTLLLQDQLGGLQVLHEDKWVNVPPVHGSLVVNIGDLLQLITNDKFVSVFHRVLAQHIGPRISVASFFLNSRDPIEGTSKVYGPIKELLSEENPPIYKDITIKDFLAHFYAEGLNGKSSLEPFKL