Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91844.t1 | XP_003599445.2 | 96.7 | 1052 | 35 | 0 | 1 | 1052 | 1 | 1052 | 0.00E+00 | 1891.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91844.t1 | Q9LFS8 | 59.5 | 1038 | 420 | 0 | 3 | 1040 | 2 | 1039 | 0.0e+00 | 1161.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91844.t1 | G7J0X6 | 96.7 | 1052 | 35 | 0 | 1 | 1052 | 1 | 1052 | 0.0e+00 | 1891.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene035826 | MS.gene91844 | PPI |
| MS.gene064351 | MS.gene91844 | PPI |
| MS.gene035828 | MS.gene91844 | PPI |
| MS.gene91844 | MS.gene043595 | PPI |
| MS.gene99872 | MS.gene91844 | PPI |
| MS.gene043643 | MS.gene91844 | PPI |
| MS.gene043645 | MS.gene91844 | PPI |
| MS.gene91844 | MS.gene73093 | PPI |
| MS.gene043593 | MS.gene91844 | PPI |
| MS.gene064353 | MS.gene91844 | PPI |
| MS.gene91844 | MS.gene035825 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91844.t1 | MTR_3g033470 | 97.814 | 1052 | 23 | 0 | 1 | 1052 | 1 | 1052 | 0.0 | 2127 |
| MS.gene91844.t1 | MTR_4g115050 | 93.948 | 1041 | 63 | 0 | 12 | 1052 | 1 | 1041 | 0.0 | 1998 |
| MS.gene91844.t1 | MTR_5g036370 | 81.775 | 1048 | 190 | 1 | 5 | 1052 | 6 | 1052 | 0.0 | 1741 |
| MS.gene91844.t1 | MTR_5g036330 | 89.212 | 241 | 26 | 0 | 812 | 1052 | 1 | 241 | 2.25e-154 | 457 |
| MS.gene91844.t1 | MTR_5g036300 | 73.387 | 124 | 19 | 2 | 912 | 1032 | 2 | 114 | 9.43e-49 | 169 |
| MS.gene91844.t1 | MTR_4g061050 | 20.926 | 1080 | 692 | 34 | 22 | 1004 | 22 | 1036 | 5.10e-23 | 106 |
| MS.gene91844.t1 | MTR_4g036760 | 24.270 | 445 | 247 | 15 | 21 | 394 | 22 | 447 | 2.08e-13 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91844.t1 | AT5G15920 | 61.427 | 1037 | 400 | 0 | 5 | 1041 | 4 | 1040 | 0.0 | 1285 |
| MS.gene91844.t1 | AT5G61460 | 20.904 | 1062 | 738 | 32 | 13 | 1004 | 6 | 1035 | 1.23e-18 | 92.4 |
| MS.gene91844.t1 | AT3G47460 | 23.146 | 445 | 277 | 16 | 23 | 424 | 2 | 424 | 6.23e-13 | 73.9 |
| MS.gene91844.t1 | AT3G47460 | 23.146 | 445 | 277 | 16 | 23 | 424 | 2 | 424 | 6.62e-13 | 73.9 |
Find 211 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTAGTAATTCCCAATTT+TGG | 0.071387 | 3.2:-22330250 | None:intergenic |
| AACATCTTCCTTTCATTTAT+TGG | 0.074155 | 3.2:-22336243 | None:intergenic |
| TTCTACATGTTTCAGTTTAT+TGG | 0.091865 | 3.2:+22330193 | MS.gene91844:intron |
| TAGTAATTTGCTCCTCTTTA+TGG | 0.112205 | 3.2:-22320329 | None:intergenic |
| AATTGGGAATTACTAGTTTA+TGG | 0.115202 | 3.2:+22330254 | MS.gene91844:CDS |
| GACTAAAAGTTTCATTTATC+TGG | 0.131837 | 3.2:-22335538 | None:intergenic |
| ATCTCATCAACAACTCTAAA+TGG | 0.146895 | 3.2:-22336122 | None:intergenic |
| CTTACATTGGCTGATATTTC+AGG | 0.163736 | 3.2:-22329867 | None:intergenic |
| CATAAGTTCCATTCTCTTCT+TGG | 0.172420 | 3.2:-22325976 | None:intergenic |
| CCATAATGCAATTAAAATTA+AGG | 0.190460 | 3.2:+22331088 | MS.gene91844:CDS |
| AGCACTCACTGTGGTGTATT+TGG | 0.192925 | 3.2:-22336294 | None:intergenic |
| AGCTGATGGGGTCCCAAAAT+TGG | 0.195674 | 3.2:+22330237 | MS.gene91844:CDS |
| GTGAAGCGGGGAGAAGATTC+TGG | 0.232032 | 3.2:+22320279 | MS.gene91844:CDS |
| GAATTCCACAAGGAGGTTTA+TGG | 0.241297 | 3.2:+22328769 | MS.gene91844:CDS |
| GATATGGACTTTGATCAATT+TGG | 0.248571 | 3.2:+22335690 | MS.gene91844:CDS |
| CCTCGATTGAATCTCGTAAT+TGG | 0.254987 | 3.2:+22320056 | MS.gene91844:CDS |
| ATATGTTATTATTGACAAAA+AGG | 0.257309 | 3.2:-22334972 | None:intergenic |
| ATATATACCTCAACTAAAAC+TGG | 0.263878 | 3.2:-22328793 | None:intergenic |
| GCAGATCTGGTAACAACTTT+GGG | 0.277791 | 3.2:-22336693 | None:intergenic |
| GTTAACTCCTGTGCAACTTC+TGG | 0.284125 | 3.2:+22322507 | MS.gene91844:CDS |
| TTGTAAAATTTGCAGGTTGA+TGG | 0.302713 | 3.2:+22328648 | MS.gene91844:intron |
| AGGAAATATTGTGCCCAAAA+AGG | 0.305620 | 3.2:+22321163 | MS.gene91844:intron |
| TCTTGGCATTGTCACTTATT+CGG | 0.308112 | 3.2:-22325959 | None:intergenic |
| TCATGAACAAATTGCTTCAT+TGG | 0.309829 | 3.2:+22330548 | MS.gene91844:CDS |
| CTTGAGTCAAATTATTTACT+TGG | 0.327965 | 3.2:-22321217 | None:intergenic |
| GTAATTGGGCCAAATGGTTC+TGG | 0.330469 | 3.2:+22320071 | MS.gene91844:CDS |
| CTTGTATGTGCTATTGCTCT+TGG | 0.333455 | 3.2:+22320104 | MS.gene91844:CDS |
| TTGCATGCATTGCGAAAATC+TGG | 0.335891 | 3.2:+22328697 | MS.gene91844:CDS |
| GAAAGGATAGCATACTTAAT+AGG | 0.342576 | 3.2:-22323196 | None:intergenic |
| GGAAAGAAGCTTTGTGAATC+AGG | 0.346798 | 3.2:+22330599 | MS.gene91844:CDS |
| CAAGAAGAGAATGGAACTTA+TGG | 0.353352 | 3.2:+22325977 | MS.gene91844:CDS |
| TACATATAAAAGTCAAATTC+AGG | 0.356363 | 3.2:+22335715 | MS.gene91844:CDS |
| TCAATCTCTAAAATGTTTCC+AGG | 0.357210 | 3.2:-22319987 | None:intergenic |
| TACGACTTTCTGCAGTTGCT+TGG | 0.358431 | 3.2:+22320231 | MS.gene91844:intron |
| TTTCAACAGATGGCTGTTGC+TGG | 0.358447 | 3.2:+22335566 | MS.gene91844:CDS |
| CAAGCAATTGTTAGGCGTAT+TGG | 0.366177 | 3.2:+22330866 | MS.gene91844:CDS |
| TGCAGATCTGGTAACAACTT+TGG | 0.372012 | 3.2:-22336694 | None:intergenic |
| TGGGCGAGCCACAAGTATTC+AGG | 0.373583 | 3.2:+22320251 | MS.gene91844:CDS |
| TACAAGGTGTCTGGCTGAAC+TGG | 0.374002 | 3.2:+22335138 | MS.gene91844:CDS |
| TCCCCGCGATCGGGACTTCT+TGG | 0.375328 | 3.2:+22329773 | MS.gene91844:CDS |
| TTTCAGGAGGCGGCTCTCTT+CGG | 0.376451 | 3.2:-22329851 | None:intergenic |
| CTTCTCAGATGAGCATGATA+TGG | 0.377932 | 3.2:+22335674 | MS.gene91844:intron |
| TCATCCTTGGGAAGTTCATA+AGG | 0.384937 | 3.2:-22326365 | None:intergenic |
| GTTAGCAAAGCTTGTTGATC+AGG | 0.388465 | 3.2:+22331040 | MS.gene91844:CDS |
| CAGCATTACGTTCCTTCAAC+TGG | 0.389030 | 3.2:-22322741 | None:intergenic |
| ATTAGATGCAAAGTGCAAAA+AGG | 0.390121 | 3.2:+22325929 | MS.gene91844:CDS |
| GGCTGAACTGGATAACATTA+AGG | 0.392082 | 3.2:+22335150 | MS.gene91844:CDS |
| AACACCTCCTTGACAGCAAC+AGG | 0.393672 | 3.2:-22330009 | None:intergenic |
| CATTGGTCTAAGTCTAGATA+TGG | 0.405667 | 3.2:+22330295 | MS.gene91844:CDS |
| GCCTCACTATATTGCAGATC+TGG | 0.407453 | 3.2:-22336706 | None:intergenic |
| ACGACTTTCTGCAGTTGCTT+GGG | 0.410346 | 3.2:+22320232 | MS.gene91844:intron |
| TATGAGAAATTACCCTTTGA+GGG | 0.412265 | 3.2:-22336772 | None:intergenic |
| GTCAAGTTGCTTGGTACACT+TGG | 0.416024 | 3.2:+22328925 | MS.gene91844:CDS |
| TGGCTTGTGAAGTTGTATCT+TGG | 0.427489 | 3.2:-22334942 | None:intergenic |
| TGATGCTCCTGTTGCTGTCA+AGG | 0.428280 | 3.2:+22330002 | MS.gene91844:CDS |
| CACACTTACAATCTCATCCT+TGG | 0.433193 | 3.2:-22326378 | None:intergenic |
| GCTGATGGGGTCCCAAAATT+GGG | 0.435739 | 3.2:+22330238 | MS.gene91844:CDS |
| GAACTCTTTCCAGAACCATT+TGG | 0.439353 | 3.2:-22320080 | None:intergenic |
| TGACCAGTATAATTTAAAAC+TGG | 0.439540 | 3.2:-22329822 | None:intergenic |
| CTCGATTGAATCTCGTAATT+GGG | 0.446122 | 3.2:+22320057 | MS.gene91844:CDS |
| CATCCTTGGGAAGTTCATAA+GGG | 0.449595 | 3.2:-22326364 | None:intergenic |
| ACTAAAAGTTTCATTTATCT+GGG | 0.451888 | 3.2:-22335537 | None:intergenic |
| TAACATATTGGAACAATATG+AGG | 0.452120 | 3.2:+22334987 | MS.gene91844:CDS |
| CTCAGCGCCCATCATCAATC+TGG | 0.453912 | 3.2:+22335955 | MS.gene91844:CDS |
| CACCAGAAAATCACTATCAT+TGG | 0.458529 | 3.2:+22330278 | MS.gene91844:CDS |
| GAGAGAGGGAATTGTGGAGT+TGG | 0.462077 | 3.2:+22328463 | MS.gene91844:CDS |
| TTCATGAAGCTCCCTTTCCT+CGG | 0.462694 | 3.2:-22330532 | None:intergenic |
| GCCTACTACAATTGAGGAGT+TGG | 0.468182 | 3.2:+22334909 | MS.gene91844:CDS |
| GTCTCTTCCAGAAGTTGCAC+AGG | 0.473226 | 3.2:-22322514 | None:intergenic |
| AATCTCGTAATTGGGCCAAA+TGG | 0.473861 | 3.2:+22320065 | MS.gene91844:CDS |
| CACTAGCAACAAGTCGGAAT+GGG | 0.474425 | 3.2:+22320368 | MS.gene91844:CDS |
| CTGAATGATCAAGATTAGAT+TGG | 0.476451 | 3.2:-22330038 | None:intergenic |
| TGGCCTATGCGGAGAGCCCC+AGG | 0.479460 | 3.2:+22320124 | MS.gene91844:CDS |
| GGGGAGGATGATTATATGCC+TGG | 0.481452 | 3.2:+22319969 | MS.gene91844:CDS |
| AGGAGCGACAAGCAATTGTT+AGG | 0.482410 | 3.2:+22330858 | MS.gene91844:CDS |
| CACCAAGAAGTCCCGATCGC+GGG | 0.483962 | 3.2:-22329775 | None:intergenic |
| ACGAGATTCAATCGAGGCCC+GGG | 0.484233 | 3.2:-22320050 | None:intergenic |
| TATTCAGGCATTTGTGAAGC+GGG | 0.485114 | 3.2:+22320266 | MS.gene91844:CDS |
| GTTGTTGATGAGATCAATCA+AGG | 0.485873 | 3.2:+22336131 | MS.gene91844:CDS |
| TGAAGCGGGGAGAAGATTCT+GGG | 0.486260 | 3.2:+22320280 | MS.gene91844:CDS |
| TCTCGGTATCAACTCTCGTT+TGG | 0.486444 | 3.2:+22329969 | MS.gene91844:CDS |
| TTTCATTGAATTTGATGCAA+AGG | 0.487383 | 3.2:+22331587 | MS.gene91844:CDS |
| GGATCTGAGCTCCGAGGAAA+GGG | 0.487507 | 3.2:+22330521 | MS.gene91844:CDS |
| GAAGGAATCTACAAGGTGTC+TGG | 0.489449 | 3.2:+22335129 | MS.gene91844:CDS |
| AGAAGCACAAAATAAGCAAA+AGG | 0.492099 | 3.2:+22330838 | MS.gene91844:CDS |
| TACGAGATTCAATCGAGGCC+CGG | 0.492221 | 3.2:-22320051 | None:intergenic |
| AACACAGGATCCCCGCGATC+GGG | 0.493268 | 3.2:+22329764 | MS.gene91844:CDS |
| TTGGATGTTAAACCTCTGAA+TGG | 0.494697 | 3.2:-22321198 | None:intergenic |
| TTATAGGAGGTGGAATTACA+AGG | 0.494713 | 3.2:+22326230 | MS.gene91844:intron |
| TCTCATCAACAACTCTAAAT+GGG | 0.495363 | 3.2:-22336121 | None:intergenic |
| GTATGAGAAATTACCCTTTG+AGG | 0.496181 | 3.2:-22336773 | None:intergenic |
| GATGGACGAGTTGAGGAAGC+AGG | 0.496512 | 3.2:+22326265 | MS.gene91844:CDS |
| ATCTAGAGGGTCAAGTTGCT+TGG | 0.497651 | 3.2:+22328916 | MS.gene91844:CDS |
| AGAAATTCCTTCTCTAGGTC+GGG | 0.499819 | 3.2:-22333480 | None:intergenic |
| TCGCAATGCATGCAAACACT+TGG | 0.502771 | 3.2:-22328689 | None:intergenic |
| TGAACAAATTGCTTCATTGG+AGG | 0.503879 | 3.2:+22330551 | MS.gene91844:CDS |
| TTAGATGCCTACTACAATTG+AGG | 0.503994 | 3.2:+22334903 | MS.gene91844:intron |
| CCTCAAGAAATTCCTTCTCT+AGG | 0.511891 | 3.2:-22333485 | None:intergenic |
| ATAAGTGCACGATGTTGCTC+TGG | 0.514176 | 3.2:-22322565 | None:intergenic |
| AAGAAATTCCTTCTCTAGGT+CGG | 0.514868 | 3.2:-22333481 | None:intergenic |
| TCCAACTCCTCAATTGTAGT+AGG | 0.515741 | 3.2:-22334910 | None:intergenic |
| ACACTTACAATCTCATCCTT+GGG | 0.518016 | 3.2:-22326377 | None:intergenic |
| AGGAACTTTAAACCAGTTGA+AGG | 0.518067 | 3.2:+22322729 | MS.gene91844:CDS |
| TAGACTGAGAGAGGGAATTG+TGG | 0.518288 | 3.2:+22328457 | MS.gene91844:CDS |
| AGGATCTGAGCTCCGAGGAA+AGG | 0.519212 | 3.2:+22330520 | MS.gene91844:CDS |
| CAACCTGGGGCTCTCCGCAT+AGG | 0.523869 | 3.2:-22320127 | None:intergenic |
| GCACATTAAGATTACCTTGA+GGG | 0.528192 | 3.2:+22320302 | MS.gene91844:CDS |
| GTACCCCTCCAGATTGATGA+TGG | 0.530960 | 3.2:-22335963 | None:intergenic |
| TTTAAATGTGAGGGACATTG+AGG | 0.531854 | 3.2:+22330500 | MS.gene91844:CDS |
| GCGTGAGAAGACTGCAGCAA+AGG | 0.532725 | 3.2:+22323132 | MS.gene91844:CDS |
| ATATGAGGCTCGTCAGAGAC+AGG | 0.533677 | 3.2:+22335002 | MS.gene91844:CDS |
| TTTGAGGGTTGCTCAATCCA+AGG | 0.533889 | 3.2:-22336757 | None:intergenic |
| CCACGAGGTTTCTCAATGTA+GGG | 0.535694 | 3.2:-22335514 | None:intergenic |
| GTCTCAGATCAATCTCATGC+TGG | 0.536098 | 3.2:+22328891 | MS.gene91844:CDS |
| ACACTAGCAACAAGTCGGAA+TGG | 0.536162 | 3.2:+22320367 | MS.gene91844:CDS |
| TGACAATGCCAAGAAGAGAA+TGG | 0.536503 | 3.2:+22325968 | MS.gene91844:CDS |
| ACAAAGAGATGGACGAGTTG+AGG | 0.537247 | 3.2:+22326258 | MS.gene91844:CDS |
| TTGGATTGAGCAACCCTCAA+AGG | 0.539296 | 3.2:+22336759 | MS.gene91844:CDS |
| GTTGCTGGAGAAGTTTCACT+AGG | 0.539741 | 3.2:+22335581 | MS.gene91844:CDS |
| AAAACTCGATGCTGACAAGA+AGG | 0.542595 | 3.2:+22335111 | MS.gene91844:CDS |
| TCTTACCAGATGCGTGCTCT+CGG | 0.544720 | 3.2:+22329952 | MS.gene91844:intron |
| GATCTTCTTGTTGAAGCCGC+TGG | 0.545138 | 3.2:+22331531 | MS.gene91844:CDS |
| TAACACAGGATCCCCGCGAT+CGG | 0.545496 | 3.2:+22329763 | MS.gene91844:CDS |
| GGCTGAATATCGTGAAGCTA+AGG | 0.546055 | 3.2:+22323108 | MS.gene91844:CDS |
| TGGATTGAGCAACCCTCAAA+GGG | 0.546089 | 3.2:+22336760 | MS.gene91844:CDS |
| TTGGCTGATATTTCAGGAGG+CGG | 0.548588 | 3.2:-22329861 | None:intergenic |
| GATTACTTAAAATGTAAACC+CGG | 0.551566 | 3.2:+22320032 | MS.gene91844:CDS |
| CGATGTTGCTCTGGAAGTTG+TGG | 0.553682 | 3.2:-22322556 | None:intergenic |
| ATACTATTCACTAGAAGTTG+AGG | 0.553846 | 3.2:-22330355 | None:intergenic |
| ACTTCTGGAAGAGACAGAAA+AGG | 0.555047 | 3.2:+22322522 | MS.gene91844:CDS |
| TGAATGTAATGAATGGCCCT+TGG | 0.555314 | 3.2:+22336740 | MS.gene91844:CDS |
| AAGAGATGAACTTCTTGCCA+AGG | 0.555563 | 3.2:+22322795 | MS.gene91844:CDS |
| CTATTTAGATTTAAATGTGA+GGG | 0.555671 | 3.2:+22330491 | MS.gene91844:intron |
| TGATAATCAGTGTGGACCGC+TGG | 0.555933 | 3.2:+22336855 | MS.gene91844:intron |
| AGTATTATCACTGGACATGT+TGG | 0.556987 | 3.2:+22336888 | MS.gene91844:CDS |
| CCTAGAGAAGGAATTTCTTG+AGG | 0.557053 | 3.2:+22333485 | MS.gene91844:CDS |
| GAAAAGCAAACTGAAATCGA+TGG | 0.558159 | 3.2:+22330992 | MS.gene91844:CDS |
| GAAACTGATCAGAAAGCTGA+TGG | 0.558582 | 3.2:+22330223 | MS.gene91844:CDS |
| TGCTAATCTTCGTAAGCAGT+TGG | 0.558627 | 3.2:+22330623 | MS.gene91844:CDS |
| ACTTCTTGGTGAACAACCTA+CGG | 0.563548 | 3.2:+22329787 | MS.gene91844:CDS |
| CTAAGCGCCACAAAATCAGC+AGG | 0.568080 | 3.2:+22319027 | MS.gene91844:CDS |
| CTGGTACATCGTAGTTCCGT+AGG | 0.569457 | 3.2:-22329803 | None:intergenic |
| TGCATTGAAGCATGTTGAGC+TGG | 0.570946 | 3.2:+22322600 | MS.gene91844:CDS |
| AAAAGAAATTGCCATGGCTG+AGG | 0.571274 | 3.2:+22323071 | MS.gene91844:CDS |
| TACTATTCACTAGAAGTTGA+GGG | 0.572061 | 3.2:-22330354 | None:intergenic |
| TTGAGGGTTGCTCAATCCAA+GGG | 0.572526 | 3.2:-22336756 | None:intergenic |
| GATCGATGGAGTATTATCAC+TGG | 0.573187 | 3.2:+22336879 | MS.gene91844:CDS |
| TGCATGCATTGCGAAAATCT+GGG | 0.575622 | 3.2:+22328698 | MS.gene91844:CDS |
| TGCAGCAAAGGAGCTTGAGA+AGG | 0.575951 | 3.2:+22323144 | MS.gene91844:CDS |
| AGCGCCCATCATCAATCTGG+AGG | 0.582072 | 3.2:+22335958 | MS.gene91844:CDS |
| ATCTCATGCTGGATATCTAG+AGG | 0.584471 | 3.2:+22328902 | MS.gene91844:CDS |
| GAAGAGACAGAAAAGGCTGT+TGG | 0.586153 | 3.2:+22322529 | MS.gene91844:CDS |
| AGCAAAGGAGCTTGAGAAGG+CGG | 0.586361 | 3.2:+22323147 | MS.gene91844:CDS |
| CACAAATGCCTGAATACTTG+TGG | 0.586797 | 3.2:-22320259 | None:intergenic |
| AAACTGATCAGAAAGCTGAT+GGG | 0.587636 | 3.2:+22330224 | MS.gene91844:CDS |
| GTATTCAGGCATTTGTGAAG+CGG | 0.589507 | 3.2:+22320265 | MS.gene91844:CDS |
| TATAGGAGGTGGAATTACAA+GGG | 0.590156 | 3.2:+22326231 | MS.gene91844:intron |
| GAATGGATCCAATAAATGAA+AGG | 0.594716 | 3.2:+22336235 | MS.gene91844:CDS |
| AGTTGCTTGGTACACTTGGA+AGG | 0.595673 | 3.2:+22328929 | MS.gene91844:CDS |
| CACATTAAGATTACCTTGAG+GGG | 0.596280 | 3.2:+22320303 | MS.gene91844:CDS |
| TGTGGACCGCTGGTGATCGA+TGG | 0.597266 | 3.2:+22336865 | MS.gene91844:CDS |
| CTGGGCCATAAACCTCCTTG+TGG | 0.598562 | 3.2:-22328774 | None:intergenic |
| GCCACGAGGTTTCTCAATGT+AGG | 0.601181 | 3.2:-22335515 | None:intergenic |
| CGCCCATCATCAATCTGGAG+GGG | 0.603760 | 3.2:+22335960 | MS.gene91844:CDS |
| ACCAAGAAGTCCCGATCGCG+GGG | 0.605568 | 3.2:-22329774 | None:intergenic |
| ACAAGGGAAGTACAAAGAGA+TGG | 0.607131 | 3.2:+22326247 | MS.gene91844:CDS |
| ATTACTTAAAATGTAAACCC+GGG | 0.608024 | 3.2:+22320033 | MS.gene91844:CDS |
| AAACCCTTATGAACTTCCCA+AGG | 0.608677 | 3.2:+22326361 | MS.gene91844:CDS |
| GCGCCCATCATCAATCTGGA+GGG | 0.610882 | 3.2:+22335959 | MS.gene91844:CDS |
| ACGTAATGCTGAATTAGAGA+AGG | 0.611337 | 3.2:+22322753 | MS.gene91844:CDS |
| AATGCAGTCTTTCATAACAC+AGG | 0.612682 | 3.2:+22329749 | MS.gene91844:intron |
| AGTATATTGAATGTAATGAA+TGG | 0.615421 | 3.2:+22336733 | MS.gene91844:CDS |
| TATGGAGAAAGAGAATCGAT+TGG | 0.615838 | 3.2:+22325995 | MS.gene91844:CDS |
| TTCATATCATACCTCAGCCA+TGG | 0.617052 | 3.2:-22323082 | None:intergenic |
| AACTGATCAGAAAGCTGATG+GGG | 0.617295 | 3.2:+22330225 | MS.gene91844:CDS |
| CTGACAAGAAGGAATCTACA+AGG | 0.619435 | 3.2:+22335122 | MS.gene91844:CDS |
| TACCCCTCCAGATTGATGAT+GGG | 0.619544 | 3.2:-22335962 | None:intergenic |
| CAGATCTGGTAACAACTTTG+GGG | 0.622648 | 3.2:-22336692 | None:intergenic |
| GCTGAGGTATGATATGAAGC+AGG | 0.623097 | 3.2:+22323087 | MS.gene91844:CDS |
| TTACCAGCATAGACTGAGAG+AGG | 0.623689 | 3.2:+22328448 | MS.gene91844:intron |
| AACTCACAGACCCTGTCTTG+CGG | 0.625196 | 3.2:-22322478 | None:intergenic |
| GCTTACACCCGACCTAGAGA+AGG | 0.631541 | 3.2:+22333473 | MS.gene91844:CDS |
| GCATGCATTGCGAAAATCTG+GGG | 0.632232 | 3.2:+22328699 | MS.gene91844:CDS |
| AATAAACACTAGCAACAAGT+CGG | 0.633220 | 3.2:+22320362 | MS.gene91844:CDS |
| ACCAGATCTGCAATATAGTG+AGG | 0.635581 | 3.2:+22336705 | MS.gene91844:CDS |
| TCTTTAGATTGGAGAAGCGG+AGG | 0.635604 | 3.2:+22333251 | MS.gene91844:intron |
| ACATTGGCTGATATTTCAGG+AGG | 0.637260 | 3.2:-22329864 | None:intergenic |
| TATATACCTCAACTAAAACT+GGG | 0.637444 | 3.2:-22328792 | None:intergenic |
| CTTTGATGAAGTGTAAAGAG+AGG | 0.639262 | 3.2:+22328555 | MS.gene91844:CDS |
| ACTATTTAGATTTAAATGTG+AGG | 0.639567 | 3.2:+22330490 | MS.gene91844:intron |
| AAAATTTCGTCTGTAACCAG+CGG | 0.641658 | 3.2:-22331547 | None:intergenic |
| ATTCAGGCATTTGTGAAGCG+GGG | 0.642294 | 3.2:+22320267 | MS.gene91844:CDS |
| ACATTAAGATTACCTTGAGG+GGG | 0.645553 | 3.2:+22320304 | MS.gene91844:CDS |
| TGCTCCTGTTGCTGTCAAGG+AGG | 0.645592 | 3.2:+22330005 | MS.gene91844:CDS |
| TGAGGAAGCAGGAAGAAACT+CGG | 0.649381 | 3.2:+22326276 | MS.gene91844:CDS |
| AGAATGTAGACAGAAGCTTA+CGG | 0.650313 | 3.2:+22333419 | MS.gene91844:CDS |
| ATGTGGCTGAAACCATTCAG+AGG | 0.657774 | 3.2:+22321186 | MS.gene91844:CDS |
| GGCACATTAAGATTACCTTG+AGG | 0.658678 | 3.2:+22320301 | MS.gene91844:CDS |
| TCTCATGCTGGATATCTAGA+GGG | 0.660256 | 3.2:+22328903 | MS.gene91844:CDS |
| TACCAGCATAGACTGAGAGA+GGG | 0.661024 | 3.2:+22328449 | MS.gene91844:intron |
| TCACCAAGAAGTCCCGATCG+CGG | 0.665560 | 3.2:-22329776 | None:intergenic |
| CATTAAGATTACCTTGAGGG+GGG | 0.680350 | 3.2:+22320305 | MS.gene91844:CDS |
| GCTATTGCTCTTGGCCTATG+CGG | 0.686307 | 3.2:+22320113 | MS.gene91844:CDS |
| CATTGAGGATCTGAGCTCCG+AGG | 0.695183 | 3.2:+22330515 | MS.gene91844:CDS |
| TTTCATTTATCTGGGCCACG+AGG | 0.696303 | 3.2:-22335529 | None:intergenic |
| CCCTACATTGAGAAACCTCG+TGG | 0.704731 | 3.2:+22335514 | MS.gene91844:CDS |
| CCAATTACGAGATTCAATCG+AGG | 0.705532 | 3.2:-22320056 | None:intergenic |
| GCATCGCGATGAATTCCACA+AGG | 0.711479 | 3.2:+22328759 | MS.gene91844:CDS |
| AATACTCCATCGATCACCAG+CGG | 0.716795 | 3.2:-22336871 | None:intergenic |
| TCGCGATGAATTCCACAAGG+AGG | 0.719403 | 3.2:+22328762 | MS.gene91844:CDS |
| ACTATGCTAAGTCAATTGCG+CGG | 0.733384 | 3.2:+22333451 | MS.gene91844:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 22319008 | 22336926 | 22319008 | ID=MS.gene91844 |
| chr3.2 | mRNA | 22319008 | 22336926 | 22319008 | ID=MS.gene91844.t1;Parent=MS.gene91844 |
| chr3.2 | exon | 22319008 | 22319048 | 22319008 | ID=MS.gene91844.t1.exon1;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22319008 | 22319048 | 22319008 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22319968 | 22320145 | 22319968 | ID=MS.gene91844.t1.exon2;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22319968 | 22320145 | 22319968 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22320246 | 22320399 | 22320246 | ID=MS.gene91844.t1.exon3;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22320246 | 22320399 | 22320246 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22321165 | 22321238 | 22321165 | ID=MS.gene91844.t1.exon4;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22321165 | 22321238 | 22321165 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22322472 | 22322621 | 22322472 | ID=MS.gene91844.t1.exon5;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22322472 | 22322621 | 22322472 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22322712 | 22322816 | 22322712 | ID=MS.gene91844.t1.exon6;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22322712 | 22322816 | 22322712 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22323058 | 22323203 | 22323058 | ID=MS.gene91844.t1.exon7;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22323058 | 22323203 | 22323058 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22325905 | 22326016 | 22325905 | ID=MS.gene91844.t1.exon8;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22325905 | 22326016 | 22325905 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22326236 | 22326391 | 22326236 | ID=MS.gene91844.t1.exon9;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22326236 | 22326391 | 22326236 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22328455 | 22328576 | 22328455 | ID=MS.gene91844.t1.exon10;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22328455 | 22328576 | 22328455 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22328663 | 22328807 | 22328663 | ID=MS.gene91844.t1.exon11;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22328663 | 22328807 | 22328663 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22328885 | 22328950 | 22328885 | ID=MS.gene91844.t1.exon12;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22328885 | 22328950 | 22328885 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22329756 | 22329884 | 22329756 | ID=MS.gene91844.t1.exon13;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22329756 | 22329884 | 22329756 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22329961 | 22330059 | 22329961 | ID=MS.gene91844.t1.exon14;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22329961 | 22330059 | 22329961 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22330208 | 22330373 | 22330208 | ID=MS.gene91844.t1.exon15;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22330208 | 22330373 | 22330208 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22330499 | 22330644 | 22330499 | ID=MS.gene91844.t1.exon16;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22330499 | 22330644 | 22330499 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22330824 | 22330887 | 22330824 | ID=MS.gene91844.t1.exon17;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22330824 | 22330887 | 22330824 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22330985 | 22331109 | 22330985 | ID=MS.gene91844.t1.exon18;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22330985 | 22331109 | 22330985 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22331531 | 22331608 | 22331531 | ID=MS.gene91844.t1.exon19;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22331531 | 22331608 | 22331531 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22333258 | 22333330 | 22333258 | ID=MS.gene91844.t1.exon20;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22333258 | 22333330 | 22333258 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22333403 | 22333506 | 22333403 | ID=MS.gene91844.t1.exon21;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22333403 | 22333506 | 22333403 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22334907 | 22335023 | 22334907 | ID=MS.gene91844.t1.exon22;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22334907 | 22335023 | 22334907 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22335094 | 22335171 | 22335094 | ID=MS.gene91844.t1.exon23;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22335094 | 22335171 | 22335094 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22335503 | 22335602 | 22335503 | ID=MS.gene91844.t1.exon24;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22335503 | 22335602 | 22335503 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22335682 | 22335736 | 22335682 | ID=MS.gene91844.t1.exon25;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22335682 | 22335736 | 22335682 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22335933 | 22335981 | 22335933 | ID=MS.gene91844.t1.exon26;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22335933 | 22335981 | 22335933 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22336065 | 22336152 | 22336065 | ID=MS.gene91844.t1.exon27;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22336065 | 22336152 | 22336065 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22336235 | 22336307 | 22336235 | ID=MS.gene91844.t1.exon28;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22336235 | 22336307 | 22336235 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22336678 | 22336781 | 22336678 | ID=MS.gene91844.t1.exon29;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22336678 | 22336781 | 22336678 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| chr3.2 | exon | 22336865 | 22336926 | 22336865 | ID=MS.gene91844.t1.exon30;Parent=MS.gene91844.t1 |
| chr3.2 | CDS | 22336865 | 22336926 | 22336865 | ID=cds.MS.gene91844.t1;Parent=MS.gene91844.t1 |
| Gene Sequence |
| Protein sequence |
