Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91931.t1 | XP_003613608.1 | 86.2 | 616 | 45 | 3 | 6 | 615 | 134 | 715 | 1.90E-120 | 443.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91931.t1 | Q8L4D8 | 45.6 | 90 | 48 | 1 | 530 | 618 | 491 | 580 | 6.9e-10 | 67.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91931.t1 | G7KB25 | 86.2 | 616 | 45 | 3 | 6 | 615 | 134 | 715 | 1.4e-120 | 443.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049341 | MS.gene91931 | 0.810155 | 1.33E-50 | -1.69E-46 |
| MS.gene049808 | MS.gene91931 | 0.808399 | 3.16E-50 | -1.69E-46 |
| MS.gene050194 | MS.gene91931 | 0.824054 | 9.93E-54 | -1.69E-46 |
| MS.gene050689 | MS.gene91931 | 0.81682 | 4.54E-52 | -1.69E-46 |
| MS.gene050838 | MS.gene91931 | 0.830053 | 3.65E-55 | -1.69E-46 |
| MS.gene051328 | MS.gene91931 | 0.828874 | 7.05E-55 | -1.69E-46 |
| MS.gene051719 | MS.gene91931 | 0.826802 | 2.22E-54 | -1.69E-46 |
| MS.gene051720 | MS.gene91931 | 0.804263 | 2.35E-49 | -1.69E-46 |
| MS.gene051850 | MS.gene91931 | 0.800007 | 1.76E-48 | -1.69E-46 |
| MS.gene052133 | MS.gene91931 | 0.83259 | 8.67E-56 | -1.69E-46 |
| MS.gene052732 | MS.gene91931 | 0.822728 | 2.03E-53 | -1.69E-46 |
| MS.gene052947 | MS.gene91931 | 0.824301 | 8.69E-54 | -1.69E-46 |
| MS.gene053144 | MS.gene91931 | 0.832218 | 1.07E-55 | -1.69E-46 |
| MS.gene053581 | MS.gene91931 | 0.828694 | 7.80E-55 | -1.69E-46 |
| MS.gene05364 | MS.gene91931 | 0.803437 | 3.49E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene91931 | 0.81608 | 6.65E-52 | -1.69E-46 |
| MS.gene055465 | MS.gene91931 | 0.824311 | 8.65E-54 | -1.69E-46 |
| MS.gene055466 | MS.gene91931 | 0.841342 | 5.04E-58 | -1.69E-46 |
| MS.gene055468 | MS.gene91931 | 0.852044 | 5.98E-61 | -1.69E-46 |
| MS.gene055580 | MS.gene91931 | -0.846436 | 2.17E-59 | -1.69E-46 |
| MS.gene055891 | MS.gene91931 | 0.813472 | 2.52E-51 | -1.69E-46 |
| MS.gene056043 | MS.gene91931 | -0.845179 | 4.77E-59 | -1.69E-46 |
| MS.gene056368 | MS.gene91931 | 0.816638 | 4.99E-52 | -1.69E-46 |
| MS.gene058339 | MS.gene91931 | 0.800102 | 1.69E-48 | -1.69E-46 |
| MS.gene058852 | MS.gene91931 | 0.812738 | 3.64E-51 | -1.69E-46 |
| MS.gene058906 | MS.gene91931 | 0.805712 | 1.17E-49 | -1.69E-46 |
| MS.gene060194 | MS.gene91931 | 0.834207 | 3.42E-56 | -1.69E-46 |
| MS.gene060429 | MS.gene91931 | 0.802142 | 6.45E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene91931 | 0.84425 | 8.49E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91931.t1 | MTR_5g038620 | 86.408 | 618 | 40 | 5 | 6 | 615 | 134 | 715 | 0.0 | 985 |
| MS.gene91931.t1 | MTR_4g108140 | 33.333 | 393 | 208 | 14 | 5 | 363 | 114 | 486 | 1.45e-35 | 142 |
| MS.gene91931.t1 | MTR_4g108140 | 51.485 | 101 | 47 | 1 | 514 | 614 | 475 | 573 | 2.65e-18 | 89.4 |
| MS.gene91931.t1 | MTR_4g108140 | 33.333 | 393 | 208 | 14 | 5 | 363 | 113 | 485 | 1.49e-35 | 142 |
| MS.gene91931.t1 | MTR_4g108140 | 51.485 | 101 | 47 | 1 | 514 | 614 | 474 | 572 | 2.90e-18 | 89.4 |
| MS.gene91931.t1 | MTR_1g023760 | 35.246 | 122 | 72 | 1 | 5 | 119 | 138 | 259 | 3.18e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91931.t1 | AT1G18840 | 38.182 | 220 | 103 | 5 | 5 | 195 | 123 | 338 | 4.78e-34 | 137 |
| MS.gene91931.t1 | AT1G18840 | 38.182 | 220 | 103 | 5 | 5 | 195 | 123 | 338 | 4.78e-34 | 137 |
| MS.gene91931.t1 | AT1G18840 | 38.182 | 220 | 103 | 5 | 5 | 195 | 123 | 338 | 4.78e-34 | 137 |
| MS.gene91931.t1 | AT1G74690 | 40.187 | 214 | 108 | 7 | 5 | 202 | 127 | 336 | 8.37e-32 | 131 |
| MS.gene91931.t1 | AT1G74690 | 44.211 | 95 | 52 | 1 | 530 | 623 | 491 | 585 | 2.21e-11 | 67.4 |
| MS.gene91931.t1 | AT1G14380 | 31.457 | 302 | 150 | 9 | 6 | 271 | 109 | 389 | 5.75e-26 | 113 |
| MS.gene91931.t1 | AT1G14380 | 48.113 | 106 | 50 | 3 | 513 | 615 | 489 | 592 | 2.37e-17 | 86.7 |
| MS.gene91931.t1 | AT1G14380 | 31.457 | 302 | 150 | 9 | 6 | 271 | 109 | 389 | 5.75e-26 | 113 |
| MS.gene91931.t1 | AT1G14380 | 48.113 | 106 | 50 | 3 | 513 | 615 | 489 | 592 | 2.37e-17 | 86.7 |
| MS.gene91931.t1 | AT1G14380 | 31.457 | 302 | 150 | 9 | 6 | 271 | 109 | 389 | 5.75e-26 | 113 |
| MS.gene91931.t1 | AT1G14380 | 48.113 | 106 | 50 | 3 | 513 | 615 | 489 | 592 | 2.37e-17 | 86.7 |
| MS.gene91931.t1 | AT1G14380 | 34.375 | 224 | 110 | 7 | 6 | 210 | 109 | 314 | 1.34e-25 | 112 |
| MS.gene91931.t1 | AT1G14380 | 48.113 | 106 | 50 | 3 | 513 | 615 | 551 | 654 | 2.04e-17 | 87.0 |
| MS.gene91931.t1 | AT1G14380 | 34.375 | 224 | 110 | 7 | 6 | 210 | 109 | 314 | 1.34e-25 | 112 |
| MS.gene91931.t1 | AT1G14380 | 48.113 | 106 | 50 | 3 | 513 | 615 | 551 | 654 | 2.04e-17 | 87.0 |
| MS.gene91931.t1 | AT1G14380 | 34.375 | 224 | 110 | 7 | 6 | 210 | 109 | 314 | 1.34e-25 | 112 |
| MS.gene91931.t1 | AT1G14380 | 48.113 | 106 | 50 | 3 | 513 | 615 | 551 | 654 | 2.04e-17 | 87.0 |
| MS.gene91931.t1 | AT1G14380 | 34.375 | 224 | 110 | 7 | 6 | 210 | 109 | 314 | 2.04e-25 | 111 |
| MS.gene91931.t1 | AT1G14380 | 48.113 | 106 | 50 | 3 | 513 | 615 | 461 | 564 | 2.68e-17 | 86.3 |
| MS.gene91931.t1 | AT2G02790 | 33.761 | 234 | 116 | 5 | 6 | 222 | 122 | 333 | 4.55e-23 | 104 |
| MS.gene91931.t1 | AT2G02790 | 51.485 | 101 | 48 | 1 | 514 | 613 | 485 | 585 | 5.09e-21 | 98.2 |
| MS.gene91931.t1 | AT2G02790 | 33.761 | 234 | 116 | 5 | 6 | 222 | 122 | 333 | 4.55e-23 | 104 |
| MS.gene91931.t1 | AT2G02790 | 51.485 | 101 | 48 | 1 | 514 | 613 | 485 | 585 | 5.09e-21 | 98.2 |
| MS.gene91931.t1 | AT2G02790 | 33.333 | 237 | 119 | 5 | 6 | 225 | 122 | 336 | 5.92e-23 | 104 |
| MS.gene91931.t1 | AT2G02790 | 44.882 | 127 | 64 | 2 | 514 | 639 | 485 | 606 | 1.68e-21 | 99.8 |
| MS.gene91931.t1 | AT1G19870 | 36.522 | 115 | 69 | 1 | 5 | 119 | 46 | 156 | 1.98e-14 | 77.0 |
| MS.gene91931.t1 | AT1G19870 | 36.522 | 115 | 69 | 1 | 5 | 119 | 229 | 339 | 2.45e-14 | 77.0 |
Find 138 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGTTTCTTCTTCAATTT+TGG | 0.131596 | 5.3:-26919290 | None:intergenic |
| GTAACAATGCCGATAGATTT+TGG | 0.176558 | 5.3:-26918431 | None:intergenic |
| TCCAAGACCTTTCTCTTCTT+TGG | 0.182427 | 5.3:-26919978 | None:intergenic |
| TCCAAGACCTTTCTCTTCTT+TGG | 0.182427 | 5.3:-26920206 | None:intergenic |
| CTTTCACGGCAGGTGATTTC+CGG | 0.192974 | 5.3:-26919352 | None:intergenic |
| TCTGAGACCTTTCTCTTCTT+TGG | 0.196588 | 5.3:-26920284 | None:intergenic |
| CTGCCATTCAAGCTCTTCTT+TGG | 0.209892 | 5.3:-26920259 | None:intergenic |
| TCCAAGACTGTTCTCTTCTT+TGG | 0.245150 | 5.3:-26919825 | None:intergenic |
| CCACCATTTGAGCTCTTCTT+TGG | 0.254127 | 5.3:-26919722 | None:intergenic |
| GGCTTATCGTTGTTCTCTTC+TGG | 0.254394 | 5.3:-26919857 | None:intergenic |
| GTTGGACAAGGTCAAGCTTT+TGG | 0.259433 | 5.3:+26919258 | MS.gene91931:CDS |
| CCACCATTTAAGCTCTTCTT+TGG | 0.271041 | 5.3:-26920106 | None:intergenic |
| CTGCCATTTAAGCTCTTCTT+TGG | 0.277905 | 5.3:-26919800 | None:intergenic |
| CCGCCATTTAAGCTCTTCTT+TGG | 0.283139 | 5.3:-26920031 | None:intergenic |
| CCGCCACTTACGCTCTTCTT+TGG | 0.286225 | 5.3:-26919953 | None:intergenic |
| AATGTTAGACGTTCTGATAT+TGG | 0.287099 | 5.3:+26918148 | MS.gene91931:CDS |
| CCGCCATTTAAGCTCTTCTT+TGG | 0.309644 | 5.3:-26919878 | None:intergenic |
| CCGCCACTTAAGCTCTTCTT+TGG | 0.309857 | 5.3:-26920181 | None:intergenic |
| AAGCCAAAGAAGAGCTTAAA+TGG | 0.311900 | 5.3:+26920103 | MS.gene91931:CDS |
| ACGTCTCCGTTTCTCTTTCT+CGG | 0.313865 | 5.3:+26921338 | MS.gene91931:CDS |
| ATGTTAGACGTTCTGATATT+GGG | 0.320597 | 5.3:+26918149 | MS.gene91931:CDS |
| AAGCCAAAGAAGAGCTTAAA+TGG | 0.320805 | 5.3:+26919797 | MS.gene91931:CDS |
| AAGCCAAAGAAGAGCTTAAA+TGG | 0.320805 | 5.3:+26919875 | MS.gene91931:CDS |
| AAGCCAAAGAAGAGCTTAAA+TGG | 0.327940 | 5.3:+26920028 | MS.gene91931:CDS |
| CTGAAAAGGCACAAGTTAAA+AGG | 0.331400 | 5.3:+26919324 | MS.gene91931:CDS |
| CAGGCAGTGAAGCTCTTCTT+TGG | 0.344810 | 5.3:-26920441 | None:intergenic |
| GCTGATGAGGGCTCAAGTTC+TGG | 0.345997 | 5.3:+26919374 | MS.gene91931:CDS |
| GCCATATAACTCGGCACTCT+TGG | 0.374824 | 5.3:-26920508 | None:intergenic |
| TCCAAGAGTGCCGAGTTATA+TGG | 0.386156 | 5.3:+26920507 | MS.gene91931:CDS |
| AAGGTAGGAGATGAAGAAAT+AGG | 0.392384 | 5.3:+26920370 | MS.gene91931:CDS |
| TGACTCGGTGTCGGCTGAAA+AGG | 0.392618 | 5.3:+26919310 | MS.gene91931:CDS |
| AAAGGATTCAAATCACTCAT+TGG | 0.395796 | 5.3:+26919424 | MS.gene91931:CDS |
| GTCAAAGAAGAGAAAGATCT+TGG | 0.396828 | 5.3:+26920130 | MS.gene91931:CDS |
| ATGATATCAGTAGCAAATCT+TGG | 0.399401 | 5.3:-26920574 | None:intergenic |
| TGATCTTGGAGAACCTTACT+TGG | 0.410168 | 5.3:+26919217 | MS.gene91931:CDS |
| AACTTCATTGAAGGCTCGTC+GGG | 0.417085 | 5.3:+26917994 | MS.gene91931:intron |
| TGAGCCCTCATCAGCTTTCA+CGG | 0.420821 | 5.3:-26919366 | None:intergenic |
| TCTTCACTTAACAGCAAGTC+AGG | 0.421600 | 5.3:+26920634 | MS.gene91931:CDS |
| TGATATCAGTAGCAAATCTT+GGG | 0.424517 | 5.3:-26920573 | None:intergenic |
| GTCAAAGAAGAGAAAGGTCT+TGG | 0.427941 | 5.3:+26919746 | MS.gene91931:CDS |
| ATAAATCTCTGTCATCTTCA+AGG | 0.431656 | 5.3:+26920719 | MS.gene91931:CDS |
| CTATCGCTAAATAGTGATCT+TGG | 0.432037 | 5.3:+26919203 | MS.gene91931:CDS |
| TTCTGTCCAAGACCTTTCTC+AGG | 0.432297 | 5.3:-26919674 | None:intergenic |
| GCCAAAGAAGAGAAAGGTCT+TGG | 0.435662 | 5.3:+26919977 | MS.gene91931:CDS |
| GCCAAAGAAGAGAAAGGTCT+TGG | 0.435662 | 5.3:+26920205 | MS.gene91931:CDS |
| TCTTGCCCTGAGAAAGGTCT+TGG | 0.436010 | 5.3:+26919668 | MS.gene91931:CDS |
| GATGTTTCAGAGCAGGGGCC+AGG | 0.436095 | 5.3:+26919596 | MS.gene91931:CDS |
| GGGCAAGACTCTTCCGACTT+TGG | 0.449990 | 5.3:-26919653 | None:intergenic |
| AGCCACTTTGAAGCCAAGTA+AGG | 0.453326 | 5.3:-26919230 | None:intergenic |
| TCACTCATTGGTTTCAGCTC+AGG | 0.453397 | 5.3:+26919436 | MS.gene91931:CDS |
| AGAAAAGAAAACACAGCTCT+AGG | 0.454796 | 5.3:+26919549 | MS.gene91931:CDS |
| CTGATAAATTTGAGCGGAAG+AGG | 0.454871 | 5.3:+26920682 | MS.gene91931:CDS |
| TTCAAAGAAGAGAAAGATGT+TGG | 0.458543 | 5.3:+26920055 | MS.gene91931:CDS |
| AAGCCAAAGAAGAGCTCAAA+TGG | 0.466804 | 5.3:+26919719 | MS.gene91931:CDS |
| CAGACAGAAAGCACTAGAAC+AGG | 0.470431 | 5.3:+26920303 | MS.gene91931:CDS |
| TTTCACGGCAGGTGATTTCC+GGG | 0.473542 | 5.3:-26919351 | None:intergenic |
| CTCTGTCATCTTCAAGGGAC+GGG | 0.476009 | 5.3:+26920725 | MS.gene91931:CDS |
| AGCTCTTATTCGTGGTCACT+TGG | 0.479958 | 5.3:+26918051 | MS.gene91931:CDS |
| AAAGCGCAAGAAGAGAATAA+TGG | 0.480554 | 5.3:+26920004 | MS.gene91931:CDS |
| AAAGCGCAAGAAGAGAATAA+TGG | 0.480554 | 5.3:+26920232 | MS.gene91931:CDS |
| CCCTCATCAGCTTTCACGGC+AGG | 0.480653 | 5.3:-26919362 | None:intergenic |
| AAGCCAAAGAAGAGCTTGAA+TGG | 0.481386 | 5.3:+26920256 | MS.gene91931:CDS |
| TCTTGATCATTAAAATTAGC+AGG | 0.485135 | 5.3:-26920460 | None:intergenic |
| AGATCACTATTTAGCGATAG+AGG | 0.485199 | 5.3:-26919200 | None:intergenic |
| CTTCAAAGTGGCTTGACCGT+TGG | 0.486768 | 5.3:+26919240 | MS.gene91931:CDS |
| TGTTACTGATGTTTCAGAGC+AGG | 0.494693 | 5.3:+26919589 | MS.gene91931:CDS |
| ACGTTCTGATATTGGGCTTG+AGG | 0.501350 | 5.3:+26918156 | MS.gene91931:CDS |
| AATCAGCAAAAGCTAGGCTA+AGG | 0.506190 | 5.3:+26920539 | MS.gene91931:CDS |
| ACCAAAGAAGAGAACAGTCT+TGG | 0.521726 | 5.3:+26919824 | MS.gene91931:CDS |
| GAAGAGTCTTGCCCTGAGAA+AGG | 0.521918 | 5.3:+26919662 | MS.gene91931:CDS |
| AAGCCAAAGAAGAGCTTAAG+TGG | 0.524060 | 5.3:+26920178 | MS.gene91931:CDS |
| CTTACAGACTAGTGTGAAGA+AGG | 0.530864 | 5.3:+26920351 | MS.gene91931:CDS |
| ACGCGACCGAGAAAGAGAAA+CGG | 0.534522 | 5.3:-26921344 | None:intergenic |
| GTTACTGATGTTTCAGAGCA+GGG | 0.534754 | 5.3:+26919590 | MS.gene91931:CDS |
| CAGCTGCAAGCTCTTATTCG+TGG | 0.539642 | 5.3:+26918043 | MS.gene91931:CDS |
| CAGACTAGTGTGAAGAAGGT+AGG | 0.543608 | 5.3:+26920355 | MS.gene91931:CDS |
| TAACTCGGCACTCTTGGACT+TGG | 0.545077 | 5.3:-26920502 | None:intergenic |
| TTCTGCTTTATATTGTGTGA+AGG | 0.546023 | 5.3:+26918090 | MS.gene91931:CDS |
| AATTGTTACAGTGCAAGCAT+TGG | 0.547871 | 5.3:+26918114 | MS.gene91931:CDS |
| ACTCAATGTCCAAAATCTAT+CGG | 0.549474 | 5.3:+26918422 | MS.gene91931:CDS |
| GAAAAGAAAACACAGCTCTA+GGG | 0.549824 | 5.3:+26919550 | MS.gene91931:CDS |
| GAGCTTAAATGGCGGTGTCA+AGG | 0.550330 | 5.3:+26919886 | MS.gene91931:CDS |
| AGAAAATGCCTTTGTTCACC+AGG | 0.551079 | 5.3:+26918478 | MS.gene91931:CDS |
| CGACTGAATCAGCAAAAGCT+AGG | 0.556769 | 5.3:+26920533 | MS.gene91931:CDS |
| TCATCTTCAAGGGACGGGAC+TGG | 0.557763 | 5.3:+26920730 | MS.gene91931:CDS |
| AAGCCAAAGAAGAGCGTAAG+TGG | 0.558887 | 5.3:+26919950 | MS.gene91931:CDS |
| TCTGCTTTATATTGTGTGAA+GGG | 0.562073 | 5.3:+26918091 | MS.gene91931:CDS |
| ACCTGCCGTGAAAGCTGATG+AGG | 0.565649 | 5.3:+26919361 | MS.gene91931:CDS |
| GGTGGTGTCAAAGAAGAGAA+AGG | 0.565727 | 5.3:+26919740 | MS.gene91931:CDS |
| GGAGTTAGCGAAGACTTGAA+TGG | 0.567098 | 5.3:+26920391 | MS.gene91931:CDS |
| ATCAGCAAAAGCTAGGCTAA+GGG | 0.567639 | 5.3:+26920540 | MS.gene91931:CDS |
| AGAAACGACGGTACCAAAGT+CGG | 0.568766 | 5.3:+26919640 | MS.gene91931:CDS |
| AAAGCTAGGCTAAGGGGACA+AGG | 0.569700 | 5.3:+26920547 | MS.gene91931:CDS |
| GACGTAAACCGCTACGACGG+CGG | 0.571909 | 5.3:-26921320 | None:intergenic |
| TAACTTCATTGAAGGCTCGT+CGG | 0.576552 | 5.3:+26917993 | MS.gene91931:intron |
| TAAATCTCTGTCATCTTCAA+GGG | 0.577185 | 5.3:+26920720 | MS.gene91931:CDS |
| GGCAGTGCCAAAGAAGAGAA+AGG | 0.578082 | 5.3:+26920277 | MS.gene91931:CDS |
| GGATACAACGACTGCAAAGA+CGG | 0.578595 | 5.3:-26921296 | None:intergenic |
| CTAGTCTGTAAGACAGCAGT+AGG | 0.581177 | 5.3:-26920340 | None:intergenic |
| TGTCGTCTCCGCCGCTGTTG+CGG | 0.583726 | 5.3:+26921258 | MS.gene91931:CDS |
| GAAGAAACTTGACTCGGTGT+CGG | 0.588481 | 5.3:+26919301 | MS.gene91931:CDS |
| GACAACAACCGCAACAGCGG+CGG | 0.588763 | 5.3:-26921266 | None:intergenic |
| TCTGTCCAAGACCTTTCTCA+GGG | 0.589944 | 5.3:-26919673 | None:intergenic |
| CCTGCCGTGAAAGCTGATGA+GGG | 0.596782 | 5.3:+26919362 | MS.gene91931:CDS |
| CACAAGTTAAAAGGACTACC+CGG | 0.602610 | 5.3:+26919333 | MS.gene91931:CDS |
| GGCGGTGCCAAAGAAGAGAA+AGG | 0.603794 | 5.3:+26919971 | MS.gene91931:CDS |
| GGCGGTGCCAAAGAAGAGAA+AGG | 0.603794 | 5.3:+26920199 | MS.gene91931:CDS |
| AGATGAAAGTGAATGCCTCC+TGG | 0.603995 | 5.3:-26920614 | None:intergenic |
| TCTCTGTCATCTTCAAGGGA+CGG | 0.611971 | 5.3:+26920724 | MS.gene91931:CDS |
| AACCTTACTTGGCTTCAAAG+TGG | 0.613672 | 5.3:+26919228 | MS.gene91931:CDS |
| AAAAGCTTGACCTTGTCCAA+CGG | 0.615531 | 5.3:-26919256 | None:intergenic |
| AGTGGCTTGACCGTTGGACA+AGG | 0.615551 | 5.3:+26919246 | MS.gene91931:CDS |
| TGTATCCGCCGCCGTCGTAG+CGG | 0.619037 | 5.3:+26921312 | MS.gene91931:CDS |
| TTACTGATGTTTCAGAGCAG+GGG | 0.623308 | 5.3:+26919591 | MS.gene91931:CDS |
| GTAAACCGCTACGACGGCGG+CGG | 0.629255 | 5.3:-26921317 | None:intergenic |
| TTAGCGATAGAGGAAACGCA+TGG | 0.630241 | 5.3:-26919190 | None:intergenic |
| AGAGACAACAACCGCAACAG+CGG | 0.631895 | 5.3:-26921269 | None:intergenic |
| TGAGCGGAAGAGGAGTTGCA+AGG | 0.632349 | 5.3:+26920692 | MS.gene91931:CDS |
| ACAGTGCAAGCATTGGCTCG+TGG | 0.637894 | 5.3:+26918121 | MS.gene91931:CDS |
| TCAGCAAAAGCTAGGCTAAG+GGG | 0.647323 | 5.3:+26920541 | MS.gene91931:CDS |
| AGTTCCTACCTGGTGAACAA+AGG | 0.648285 | 5.3:-26918486 | None:intergenic |
| TCAGTCGGAGCCATATAACT+CGG | 0.661998 | 5.3:-26920517 | None:intergenic |
| CCAAAGAAGAGCTCAAATGG+TGG | 0.663791 | 5.3:+26919722 | MS.gene91931:CDS |
| GATATCAGTAGCAAATCTTG+GGG | 0.666334 | 5.3:-26920572 | None:intergenic |
| CGGCATTGTTACATCTACAC+CGG | 0.669148 | 5.3:+26918442 | MS.gene91931:CDS |
| GAAAAGCTGATAAATTTGAG+CGG | 0.671178 | 5.3:+26920676 | MS.gene91931:CDS |
| CAGAAAGCACTAGAACAGGA+AGG | 0.674738 | 5.3:+26920307 | MS.gene91931:CDS |
| TAGCGATAGAGGAAACGCAT+GGG | 0.677774 | 5.3:-26919189 | None:intergenic |
| GGAGACGTAAACCGCTACGA+CGG | 0.680237 | 5.3:-26921323 | None:intergenic |
| CCAAAGAAGAGCTTAAATGG+TGG | 0.687938 | 5.3:+26920106 | MS.gene91931:CDS |
| TGAGAAAATGAAAGAAACGA+CGG | 0.688170 | 5.3:+26919628 | MS.gene91931:CDS |
| ATTGAAGAAGAAACTTGACT+CGG | 0.691260 | 5.3:+26919295 | MS.gene91931:CDS |
| CCAAAGAAGAGCGTAAGTGG+CGG | 0.702919 | 5.3:+26919953 | MS.gene91931:CDS |
| CCAAAGAAGAGCTTAAGTGG+CGG | 0.710668 | 5.3:+26920181 | MS.gene91931:CDS |
| CCAAAGAAGAGCTTAAATGG+CGG | 0.712376 | 5.3:+26920031 | MS.gene91931:CDS |
| GTTAGCGAAGACTTGAATGG+CGG | 0.720405 | 5.3:+26920394 | MS.gene91931:CDS |
| CCAAAGAAGAGCTTAAATGG+CGG | 0.731508 | 5.3:+26919878 | MS.gene91931:CDS |
| GGGTATCGTCGATTTCAACG+TGG | 0.789053 | 5.3:+26921234 | MS.gene91931:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATTTATCATCTATAT+CGG | - | chr5.3:26918531-26918550 | None:intergenic | 10.0% |
| !!! | AAATAATAATAGATTGTTTT+AGG | + | chr5.3:26918542-26918561 | MS.gene91931:intron | 10.0% |
| !! | AGTATTAATTGAATTAAAGA+AGG | + | chr5.3:26918693-26918712 | MS.gene91931:intron | 15.0% |
| !!! | AATTTTATATTCGATATGAA+TGG | + | chr5.3:26919009-26919028 | MS.gene91931:intron | 15.0% |
| !! | AAAAAAGAGAAATTGGTATA+AGG | - | chr5.3:26921095-26921114 | None:intergenic | 20.0% |
| !! | AAAAAGAGAAATTGGTATAA+GGG | - | chr5.3:26921094-26921113 | None:intergenic | 20.0% |
| !! | AAGAAGAAAAAATAAGAGAA+AGG | - | chr5.3:26921155-26921174 | None:intergenic | 20.0% |
| !! | CAATCACTAAGTAAATTAAA+AGG | - | chr5.3:26920788-26920807 | None:intergenic | 20.0% |
| !! | GAAAGAAAAAAAAGAGAAAT+TGG | - | chr5.3:26921102-26921121 | None:intergenic | 20.0% |
| !! | GTTTCTTTATGTATGATTAA+TGG | + | chr5.3:26917942-26917961 | MS.gene91931:intron | 20.0% |
| !! | TATATAACAAAGACAAATTC+AGG | - | chr5.3:26918756-26918775 | None:intergenic | 20.0% |
| !! | TCTTCATATAATTTCAGTTA+AGG | + | chr5.3:26918883-26918902 | MS.gene91931:intron | 20.0% |
| !! | TTAGTCATATTTCAGATATT+AGG | - | chr5.3:26918572-26918591 | None:intergenic | 20.0% |
| !!! | ATAATTTTATTGTTCATGGA+AGG | + | chr5.3:26918632-26918651 | MS.gene91931:intron | 20.0% |
| !!! | CTTTTAATTTACTTAGTGAT+TGG | + | chr5.3:26920786-26920805 | MS.gene91931:intron | 20.0% |
| !!! | GACGAAATTTTAAATGATTA+AGG | - | chr5.3:26920946-26920965 | None:intergenic | 20.0% |
| !!! | GTTGATAATTTTATTGTTCA+TGG | + | chr5.3:26918628-26918647 | MS.gene91931:intron | 20.0% |
| !!! | GTTTTGAAATTAAATTGTCT+TGG | + | chr5.3:26919102-26919121 | MS.gene91931:intron | 20.0% |
| !!! | TTTTCTCAATTTCTTTCTTT+GGG | - | chr5.3:26919472-26919491 | None:intergenic | 20.0% |
| ! | ATAAGAGAAAGGAAAGAATA+CGG | - | chr5.3:26921144-26921163 | None:intergenic | 25.0% |
| ! | ATGGTATCATTTACAAAGTT+TGG | + | chr5.3:26919028-26919047 | MS.gene91931:intron | 25.0% |
| ! | CAACTTAAAATCATAACATG+AGG | - | chr5.3:26918958-26918977 | None:intergenic | 25.0% |
| ! | GAATTTCTTAGTGAAAATGT+TGG | + | chr5.3:26918251-26918270 | MS.gene91931:intron | 25.0% |
| ! | TCTTGATCATTAAAATTAGC+AGG | - | chr5.3:26920463-26920482 | None:intergenic | 25.0% |
| ! | TTAATACTACTAGTGTTTAC+CGG | - | chr5.3:26918681-26918700 | None:intergenic | 25.0% |
| !! | ATCAACTGATAACATTTTCA+TGG | - | chr5.3:26918614-26918633 | None:intergenic | 25.0% |
| !! | CTTTTCTCAATTTCTTTCTT+TGG | - | chr5.3:26919473-26919492 | None:intergenic | 25.0% |
| !! | TCAAGTTTCTTCTTCAATTT+TGG | - | chr5.3:26919293-26919312 | None:intergenic | 25.0% |
| !! | TGTTAAGTGAAAAGTTGTTT+TGG | + | chr5.3:26918916-26918935 | MS.gene91931:intron | 25.0% |
| !!! | GATTTTTTTTTCTTTCCCTA+TGG | + | chr5.3:26919058-26919077 | MS.gene91931:intron | 25.0% |
| !!! | TTCTTTGAGATGTGTTTTTA+TGG | + | chr5.3:26920813-26920832 | MS.gene91931:intron | 25.0% |
| AAACTAAACCAAACAACCAT+AGG | - | chr5.3:26919077-26919096 | None:intergenic | 30.0% | |
| AAAGGATTCAAATCACTCAT+TGG | + | chr5.3:26919424-26919443 | MS.gene91931:CDS | 30.0% | |
| AACTAAACCAAACAACCATA+GGG | - | chr5.3:26919076-26919095 | None:intergenic | 30.0% | |
| AATCATAACATGAGGTTGAA+TGG | - | chr5.3:26918950-26918969 | None:intergenic | 30.0% | |
| AATGTTAGACGTTCTGATAT+TGG | + | chr5.3:26918148-26918167 | MS.gene91931:CDS | 30.0% | |
| ACAAAAACAACGTCCAAAAA+AGG | + | chr5.3:26919406-26919425 | MS.gene91931:CDS | 30.0% | |
| ACTCAATGTCCAAAATCTAT+CGG | + | chr5.3:26918422-26918441 | MS.gene91931:CDS | 30.0% | |
| ATAAATCTCTGTCATCTTCA+AGG | + | chr5.3:26920719-26920738 | MS.gene91931:CDS | 30.0% | |
| ATGATATCAGTAGCAAATCT+TGG | - | chr5.3:26920577-26920596 | None:intergenic | 30.0% | |
| ATGTTAGACGTTCTGATATT+GGG | + | chr5.3:26918149-26918168 | MS.gene91931:CDS | 30.0% | |
| ATTAATTAGAAGTTCCTACC+TGG | - | chr5.3:26918499-26918518 | None:intergenic | 30.0% | |
| ATTGAAGAAGAAACTTGACT+CGG | + | chr5.3:26919295-26919314 | MS.gene91931:CDS | 30.0% | |
| GAAAAGCTGATAAATTTGAG+CGG | + | chr5.3:26920676-26920695 | MS.gene91931:CDS | 30.0% | |
| TAAATCTCTGTCATCTTCAA+GGG | + | chr5.3:26920720-26920739 | MS.gene91931:CDS | 30.0% | |
| TAAGAGAAAGGAAAGAATAC+GGG | - | chr5.3:26921143-26921162 | None:intergenic | 30.0% | |
| TAATACTACTAGTGTTTACC+GGG | - | chr5.3:26918680-26918699 | None:intergenic | 30.0% | |
| TAGACAAAAACAGTTTAACC+AGG | + | chr5.3:26920596-26920615 | MS.gene91931:CDS | 30.0% | |
| TAGTTAGTGAAGCAATACAA+GGG | - | chr5.3:26918379-26918398 | None:intergenic | 30.0% | |
| TCTGCTTTATATTGTGTGAA+GGG | + | chr5.3:26918091-26918110 | MS.gene91931:CDS | 30.0% | |
| TGAGAAAATGAAAGAAACGA+CGG | + | chr5.3:26919628-26919647 | MS.gene91931:CDS | 30.0% | |
| TGATATCAGTAGCAAATCTT+GGG | - | chr5.3:26920576-26920595 | None:intergenic | 30.0% | |
| TTACCGGGAGAAAAAAAAAA+GGG | - | chr5.3:26918665-26918684 | None:intergenic | 30.0% | |
| TTCAAAGAAGAGAAAGATGT+TGG | + | chr5.3:26920055-26920074 | MS.gene91931:CDS | 30.0% | |
| TTCTGCTTTATATTGTGTGA+AGG | + | chr5.3:26918090-26918109 | MS.gene91931:CDS | 30.0% | |
| TTCTTGCATAACTTCATTGA+AGG | + | chr5.3:26917985-26918004 | MS.gene91931:intron | 30.0% | |
| TTTACCGGGAGAAAAAAAAA+AGG | - | chr5.3:26918666-26918685 | None:intergenic | 30.0% | |
| ! | ATTTTGCCATGTTGTATAGA+AGG | - | chr5.3:26921061-26921080 | None:intergenic | 30.0% |
| ! | GTACATTCTTTTTGTATGAC+AGG | - | chr5.3:26918310-26918329 | None:intergenic | 30.0% |
| ! | TTATCAGCTTTTCTACTCTT+GGG | - | chr5.3:26920669-26920688 | None:intergenic | 30.0% |
| ! | TTCTTTCATTTTCTCAGAAG+AGG | - | chr5.3:26919624-26919643 | None:intergenic | 30.0% |
| ! | TTTATCAGCTTTTCTACTCT+TGG | - | chr5.3:26920670-26920689 | None:intergenic | 30.0% |
| !! | TACTTCAATCTACTTTTCTC+AGG | + | chr5.3:26918397-26918416 | MS.gene91931:intron | 30.0% |
| !! | TGAGATGTGTTTTTATGGTA+AGG | + | chr5.3:26920818-26920837 | MS.gene91931:intron | 30.0% |
| !! | TTCTTCTTCAATTTTGGAAG+AGG | - | chr5.3:26919287-26919306 | None:intergenic | 30.0% |
| !!! | GAGTGATTTGAATCCTTTTT+TGG | - | chr5.3:26919422-26919441 | None:intergenic | 30.0% |
| AAAATTCGTCTCTGTAATCG+TGG | + | chr5.3:26920903-26920922 | MS.gene91931:intron | 35.0% | |
| AAAGCGCAAGAAGAGAATAA+TGG | + | chr5.3:26920004-26920023 | MS.gene91931:CDS | 35.0% | |
| AAGAATGTACTTGTGACTCA+TGG | + | chr5.3:26918320-26918339 | MS.gene91931:intron | 35.0% | |
| AAGAGAAAGGAAAGAATACG+GGG | - | chr5.3:26921142-26921161 | None:intergenic | 35.0% | |
| AAGCCAAAGAAGAGCTTAAA+TGG | + | chr5.3:26919797-26919816 | MS.gene91931:CDS | 35.0% | |
| AAGGTAGGAGATGAAGAAAT+AGG | + | chr5.3:26920370-26920389 | MS.gene91931:CDS | 35.0% | |
| AATTGTTACAGTGCAAGCAT+TGG | + | chr5.3:26918114-26918133 | MS.gene91931:CDS | 35.0% | |
| ACAAAAACAGTTTAACCAGG+AGG | + | chr5.3:26920599-26920618 | MS.gene91931:CDS | 35.0% | |
| AGAAAAGAAAACACAGCTCT+AGG | + | chr5.3:26919549-26919568 | MS.gene91931:CDS | 35.0% | |
| AGATCACTATTTAGCGATAG+AGG | - | chr5.3:26919203-26919222 | None:intergenic | 35.0% | |
| CAGCTGAAATGGATATCATA+TGG | - | chr5.3:26919156-26919175 | None:intergenic | 35.0% | |
| CTATCGCTAAATAGTGATCT+TGG | + | chr5.3:26919203-26919222 | MS.gene91931:CDS | 35.0% | |
| GAAAAGAAAACACAGCTCTA+GGG | + | chr5.3:26919550-26919569 | MS.gene91931:CDS | 35.0% | |
| GATATCAGTAGCAAATCTTG+GGG | - | chr5.3:26920575-26920594 | None:intergenic | 35.0% | |
| GTAGTTAGTGAAGCAATACA+AGG | - | chr5.3:26918380-26918399 | None:intergenic | 35.0% | |
| GTATGACAGGAAACATCTAT+TGG | - | chr5.3:26918297-26918316 | None:intergenic | 35.0% | |
| GTCAAAGAAGAGAAAGATCT+TGG | + | chr5.3:26920130-26920149 | MS.gene91931:CDS | 35.0% | |
| GTCAAGGAAGAGAAAAATCT+TGG | + | chr5.3:26919902-26919921 | MS.gene91931:CDS | 35.0% | |
| TACCGGGAGAAAAAAAAAAG+GGG | - | chr5.3:26918664-26918683 | None:intergenic | 35.0% | |
| TCCAAAACGTGACAATACAA+AGG | - | chr5.3:26917920-26917939 | None:intergenic | 35.0% | |
| TTAAACAACGCCTAATTGCA+GGG | - | chr5.3:26920884-26920903 | None:intergenic | 35.0% | |
| TTTAAACAACGCCTAATTGC+AGG | - | chr5.3:26920885-26920904 | None:intergenic | 35.0% | |
| TTTCTTTCCCTATGGTTGTT+TGG | + | chr5.3:26919066-26919085 | MS.gene91931:intron | 35.0% | |
| ! | CTGAAAAGGCACAAGTTAAA+AGG | + | chr5.3:26919324-26919343 | MS.gene91931:CDS | 35.0% |
| ! | GTAACAATGCCGATAGATTT+TGG | - | chr5.3:26918434-26918453 | None:intergenic | 35.0% |
| ! | TATCAGCTTTTCTACTCTTG+GGG | - | chr5.3:26920668-26920687 | None:intergenic | 35.0% |
| ! | TTGTTCTCTTCTGGTGTTTT+CGG | - | chr5.3:26919851-26919870 | None:intergenic | 35.0% |
| !! | CGATTCCAGTTTTAACGAAA+GGG | + | chr5.3:26921214-26921233 | MS.gene91931:intron | 35.0% |
| AAAAGCTTGACCTTGTCCAA+CGG | - | chr5.3:26919259-26919278 | None:intergenic | 40.0% | |
| AACCTTACTTGGCTTCAAAG+TGG | + | chr5.3:26919228-26919247 | MS.gene91931:CDS | 40.0% | |
| AAGCCAAAGAAGAGCTCAAA+TGG | + | chr5.3:26919719-26919738 | MS.gene91931:CDS | 40.0% | |
| AAGCCAAAGAAGAGCTTAAG+TGG | + | chr5.3:26920178-26920197 | MS.gene91931:CDS | 40.0% | |
| AAGCCAAAGAAGAGCTTGAA+TGG | + | chr5.3:26920256-26920275 | MS.gene91931:CDS | 40.0% | |
| AATCAGCAAAAGCTAGGCTA+AGG | + | chr5.3:26920539-26920558 | MS.gene91931:CDS | 40.0% | |
| ACCAAAGAAGAGAACAGTCT+TGG | + | chr5.3:26919824-26919843 | MS.gene91931:CDS | 40.0% | |
| ACCAATTCAGTACCAATTGC+TGG | - | chr5.3:26921185-26921204 | None:intergenic | 40.0% | |
| AGAAAATGCCTTTGTTCACC+AGG | + | chr5.3:26918478-26918497 | MS.gene91931:CDS | 40.0% | |
| AGAAACTTCAGACTCAGTTG+AGG | - | chr5.3:26918866-26918885 | None:intergenic | 40.0% | |
| AGAGAAAGGAAAGAATACGG+GGG | - | chr5.3:26921141-26921160 | None:intergenic | 40.0% | |
| AGTGAAGCAATACAAGGGTA+TGG | - | chr5.3:26918374-26918393 | None:intergenic | 40.0% | |
| ATCAGCAAAAGCTAGGCTAA+GGG | + | chr5.3:26920540-26920559 | MS.gene91931:CDS | 40.0% | |
| ATGATATCCATTTCAGCTGC+TGG | + | chr5.3:26919157-26919176 | MS.gene91931:intron | 40.0% | |
| CACAAGTTAAAAGGACTACC+CGG | + | chr5.3:26919333-26919352 | MS.gene91931:CDS | 40.0% | |
| CCAAAGAAGAGCTTAAATGG+CGG | + | chr5.3:26919800-26919819 | MS.gene91931:CDS | 40.0% | |
| CCAAAGAAGAGCTTAAATGG+TGG | + | chr5.3:26919800-26919819 | MS.gene91931:CDS | 40.0% | |
| CCAATTCAGTACCAATTGCT+GGG | - | chr5.3:26921184-26921203 | None:intergenic | 40.0% | |
| CCACCATTTAAGCTCTTCTT+TGG | - | chr5.3:26920109-26920128 | None:intergenic | 40.0% | |
| CGATACCCTTTCGTTAAAAC+TGG | - | chr5.3:26921222-26921241 | None:intergenic | 40.0% | |
| CTGATAAATTTGAGCGGAAG+AGG | + | chr5.3:26920682-26920701 | MS.gene91931:CDS | 40.0% | |
| CTTACAGACTAGTGTGAAGA+AGG | + | chr5.3:26920351-26920370 | MS.gene91931:CDS | 40.0% | |
| GCAGTGATTAACTGTGATGA+GGG | - | chr5.3:26920968-26920987 | None:intergenic | 40.0% | |
| GTCAAAGAAGAGAAAGGTCT+TGG | + | chr5.3:26919746-26919765 | MS.gene91931:CDS | 40.0% | |
| GTTACTGATGTTTCAGAGCA+GGG | + | chr5.3:26919590-26919609 | MS.gene91931:CDS | 40.0% | |
| TAACTTCATTGAAGGCTCGT+CGG | + | chr5.3:26917993-26918012 | MS.gene91931:intron | 40.0% | |
| TCCAAGACCTTTCTCTTCTT+TGG | - | chr5.3:26919750-26919769 | None:intergenic | 40.0% | |
| TCCAAGACTGTTCTCTTCTT+TGG | - | chr5.3:26919828-26919847 | None:intergenic | 40.0% | |
| TCTTCACTTAACAGCAAGTC+AGG | + | chr5.3:26920634-26920653 | MS.gene91931:CDS | 40.0% | |
| TGATCTTGGAGAACCTTACT+TGG | + | chr5.3:26919217-26919236 | MS.gene91931:CDS | 40.0% | |
| TGCCATGTTGTATAGAAGGA+GGG | - | chr5.3:26921057-26921076 | None:intergenic | 40.0% | |
| TGTGTTTCATCCCTGCAATT+AGG | + | chr5.3:26920871-26920890 | MS.gene91931:intron | 40.0% | |
| TGTTACTGATGTTTCAGAGC+AGG | + | chr5.3:26919589-26919608 | MS.gene91931:CDS | 40.0% | |
| TTACTGATGTTTCAGAGCAG+GGG | + | chr5.3:26919591-26919610 | MS.gene91931:CDS | 40.0% | |
| TTCGCAAGGCAAAAGTTCTT+TGG | + | chr5.3:26918188-26918207 | MS.gene91931:intron | 40.0% | |
| TTCTTCTTCTTCCCAGCAAT+TGG | + | chr5.3:26921170-26921189 | MS.gene91931:intron | 40.0% | |
| TTGCCATGTTGTATAGAAGG+AGG | - | chr5.3:26921058-26921077 | None:intergenic | 40.0% | |
| ! | ATTTTCTCAGAAGAGGAACC+TGG | - | chr5.3:26919617-26919636 | None:intergenic | 40.0% |
| ! | CTGCCATTTAAGCTCTTCTT+TGG | - | chr5.3:26919803-26919822 | None:intergenic | 40.0% |
| ! | GCCTTTGTATTGTCACGTTT+TGG | + | chr5.3:26917916-26917935 | MS.gene91931:intron | 40.0% |
| ! | TCTGAGACCTTTCTCTTCTT+TGG | - | chr5.3:26920287-26920306 | None:intergenic | 40.0% |
| ! | TTGGACAAGGTCAAGCTTTT+GGG | + | chr5.3:26919259-26919278 | MS.gene91931:CDS | 40.0% |
| !! | GCGATTCCAGTTTTAACGAA+AGG | + | chr5.3:26921213-26921232 | MS.gene91931:intron | 40.0% |
| !!! | CTAGCTTTTGCTGATTCAGT+CGG | - | chr5.3:26920535-26920554 | None:intergenic | 40.0% |
| !!! | CTCCCCTTTTTTTTTTCTCC+CGG | + | chr5.3:26918659-26918678 | MS.gene91931:intron | 40.0% |
| AACTTCATTGAAGGCTCGTC+GGG | + | chr5.3:26917994-26918013 | MS.gene91931:intron | 45.0% | |
| AATGCCTTTGTTCACCAGGT+AGG | + | chr5.3:26918482-26918501 | MS.gene91931:intron | 45.0% | |
| ACGTCTCCGTTTCTCTTTCT+CGG | + | chr5.3:26921338-26921357 | MS.gene91931:CDS | 45.0% | |
| ACGTTCTGATATTGGGCTTG+AGG | + | chr5.3:26918156-26918175 | MS.gene91931:CDS | 45.0% | |
| AGAAACGACGGTACCAAAGT+CGG | + | chr5.3:26919640-26919659 | MS.gene91931:CDS | 45.0% | |
| AGATGAAAGTGAATGCCTCC+TGG | - | chr5.3:26920617-26920636 | None:intergenic | 45.0% | |
| AGCTCTTATTCGTGGTCACT+TGG | + | chr5.3:26918051-26918070 | MS.gene91931:CDS | 45.0% | |
| AGTTCCTACCTGGTGAACAA+AGG | - | chr5.3:26918489-26918508 | None:intergenic | 45.0% | |
| CAGACTAGTGTGAAGAAGGT+AGG | + | chr5.3:26920355-26920374 | MS.gene91931:CDS | 45.0% | |
| CCAAAGAAGAGCTCAAATGG+TGG | + | chr5.3:26919722-26919741 | MS.gene91931:CDS | 45.0% | |
| CCAAAGAAGAGCTTAAGTGG+CGG | + | chr5.3:26920181-26920200 | MS.gene91931:CDS | 45.0% | |
| CCACCATTTGAGCTCTTCTT+TGG | - | chr5.3:26919725-26919744 | None:intergenic | 45.0% | |
| CCGCCATTTAAGCTCTTCTT+TGG | - | chr5.3:26919881-26919900 | None:intergenic | 45.0% | |
| CGACTGAATCAGCAAAAGCT+AGG | + | chr5.3:26920533-26920552 | MS.gene91931:CDS | 45.0% | |
| CGGCATTGTTACATCTACAC+CGG | + | chr5.3:26918442-26918461 | MS.gene91931:CDS | 45.0% | |
| CGGGAGAAAAAAAAAAGGGG+AGG | - | chr5.3:26918661-26918680 | None:intergenic | 45.0% | |
| CTAGTCTGTAAGACAGCAGT+AGG | - | chr5.3:26920343-26920362 | None:intergenic | 45.0% | |
| CTGCCATTCAAGCTCTTCTT+TGG | - | chr5.3:26920262-26920281 | None:intergenic | 45.0% | |
| GCCAAAGAAGAGAAAGGTCT+TGG | + | chr5.3:26919977-26919996 | MS.gene91931:CDS | 45.0% | |
| GCCATGTTGTATAGAAGGAG+GGG | - | chr5.3:26921056-26921075 | None:intergenic | 45.0% | |
| GGAGTTAGCGAAGACTTGAA+TGG | + | chr5.3:26920391-26920410 | MS.gene91931:CDS | 45.0% | |
| GGATACAACGACTGCAAAGA+CGG | - | chr5.3:26921299-26921318 | None:intergenic | 45.0% | |
| GGCAGTGATTAACTGTGATG+AGG | - | chr5.3:26920969-26920988 | None:intergenic | 45.0% | |
| GGCTTATCGTTGTTCTCTTC+TGG | - | chr5.3:26919860-26919879 | None:intergenic | 45.0% | |
| GTTAGCGAAGACTTGAATGG+CGG | + | chr5.3:26920394-26920413 | MS.gene91931:CDS | 45.0% | |
| TAGCGATAGAGGAAACGCAT+GGG | - | chr5.3:26919192-26919211 | None:intergenic | 45.0% | |
| TCAGCAAAAGCTAGGCTAAG+GGG | + | chr5.3:26920541-26920560 | MS.gene91931:CDS | 45.0% | |
| TCAGTCGGAGCCATATAACT+CGG | - | chr5.3:26920520-26920539 | None:intergenic | 45.0% | |
| TCTCTGTCATCTTCAAGGGA+CGG | + | chr5.3:26920724-26920743 | MS.gene91931:CDS | 45.0% | |
| TCTGTCCAAGACCTTTCTCA+GGG | - | chr5.3:26919676-26919695 | None:intergenic | 45.0% | |
| TGTTCAAGCCAAGCTTTGCT+GGG | - | chr5.3:26921023-26921042 | None:intergenic | 45.0% | |
| TTAGCGATAGAGGAAACGCA+TGG | - | chr5.3:26919193-26919212 | None:intergenic | 45.0% | |
| TTCTGTCCAAGACCTTTCTC+AGG | - | chr5.3:26919677-26919696 | None:intergenic | 45.0% | |
| ! | AAGCCAAAGAAGAGCGTAAG+TGG | + | chr5.3:26919950-26919969 | MS.gene91931:CDS | 45.0% |
| ! | CCCAGCAATTGGTACTGAAT+TGG | + | chr5.3:26921181-26921200 | MS.gene91931:intron | 45.0% |
| ! | GGTGGTGTCAAAGAAGAGAA+AGG | + | chr5.3:26919740-26919759 | MS.gene91931:CDS | 45.0% |
| ! | GTTGGACAAGGTCAAGCTTT+TGG | + | chr5.3:26919258-26919277 | MS.gene91931:CDS | 45.0% |
| ! | TTTTCTGACAGCTTGTCTGC+CGG | - | chr5.3:26918464-26918483 | None:intergenic | 45.0% |
| !! | AGCCACTTTGAAGCCAAGTA+AGG | - | chr5.3:26919233-26919252 | None:intergenic | 45.0% |
| !! | CACTCTCGACTCGACTTTTA+GGG | + | chr5.3:26918729-26918748 | MS.gene91931:intron | 45.0% |
| !! | CAGAAAGCACTAGAACAGGA+AGG | + | chr5.3:26920307-26920326 | MS.gene91931:CDS | 45.0% |
| !! | CAGACAGAAAGCACTAGAAC+AGG | + | chr5.3:26920303-26920322 | MS.gene91931:CDS | 45.0% |
| !! | GAAGAAACTTGACTCGGTGT+CGG | + | chr5.3:26919301-26919320 | MS.gene91931:CDS | 45.0% |
| !! | TCACTCATTGGTTTCAGCTC+AGG | + | chr5.3:26919436-26919455 | MS.gene91931:CDS | 45.0% |
| !! | TCACTCTCGACTCGACTTTT+AGG | + | chr5.3:26918728-26918747 | MS.gene91931:intron | 45.0% |
| !! | TCCAAGAGTGCCGAGTTATA+TGG | + | chr5.3:26920507-26920526 | MS.gene91931:CDS | 45.0% |
| !! | TGAGGTTCTGAAAGTTCGCA+AGG | + | chr5.3:26918174-26918193 | MS.gene91931:intron | 45.0% |
| AAAGCTAGGCTAAGGGGACA+AGG | + | chr5.3:26920547-26920566 | MS.gene91931:CDS | 50.0% | |
| ACGCGACCGAGAAAGAGAAA+CGG | - | chr5.3:26921347-26921366 | None:intergenic | 50.0% | |
| ACGTCAGCTAATCAGTGACG+TGG | - | chr5.3:26920990-26921009 | None:intergenic | 50.0% | |
| AGAGACAACAACCGCAACAG+CGG | - | chr5.3:26921272-26921291 | None:intergenic | 50.0% | |
| ATACGGGGGAGAAGAGAAGA+AGG | - | chr5.3:26921127-26921146 | None:intergenic | 50.0% | |
| CAGCTGCAAGCTCTTATTCG+TGG | + | chr5.3:26918043-26918062 | MS.gene91931:CDS | 50.0% | |
| CAGGCAGTGAAGCTCTTCTT+TGG | - | chr5.3:26920444-26920463 | None:intergenic | 50.0% | |
| CCGCCACTTAAGCTCTTCTT+TGG | - | chr5.3:26920184-26920203 | None:intergenic | 50.0% | |
| CTCTGTCATCTTCAAGGGAC+GGG | + | chr5.3:26920725-26920744 | MS.gene91931:CDS | 50.0% | |
| CTGTTCAAGCCAAGCTTTGC+TGG | - | chr5.3:26921024-26921043 | None:intergenic | 50.0% | |
| CTTCAAAGTGGCTTGACCGT+TGG | + | chr5.3:26919240-26919259 | MS.gene91931:CDS | 50.0% | |
| CTTTCACGGCAGGTGATTTC+CGG | - | chr5.3:26919355-26919374 | None:intergenic | 50.0% | |
| GAAGAGTCTTGCCCTGAGAA+AGG | + | chr5.3:26919662-26919681 | MS.gene91931:CDS | 50.0% | |
| GATGAAGCCAGCAGCTGAAA+TGG | - | chr5.3:26919167-26919186 | None:intergenic | 50.0% | |
| GCCATATAACTCGGCACTCT+TGG | - | chr5.3:26920511-26920530 | None:intergenic | 50.0% | |
| GCCCCTCCTTCTATACAACA+TGG | + | chr5.3:26921052-26921071 | MS.gene91931:intron | 50.0% | |
| GGCAGTGCCAAAGAAGAGAA+AGG | + | chr5.3:26920277-26920296 | MS.gene91931:CDS | 50.0% | |
| GTACTTGTGACTCATGGCGT+AGG | + | chr5.3:26918326-26918345 | MS.gene91931:intron | 50.0% | |
| TAACTCGGCACTCTTGGACT+TGG | - | chr5.3:26920505-26920524 | None:intergenic | 50.0% | |
| TACGGGGGAGAAGAGAAGAA+GGG | - | chr5.3:26921126-26921145 | None:intergenic | 50.0% | |
| TCTTGCCCTGAGAAAGGTCT+TGG | + | chr5.3:26919668-26919687 | MS.gene91931:CDS | 50.0% | |
| TGAGCCCTCATCAGCTTTCA+CGG | - | chr5.3:26919369-26919388 | None:intergenic | 50.0% | |
| TTTCACGGCAGGTGATTTCC+GGG | - | chr5.3:26919354-26919373 | None:intergenic | 50.0% | |
| ! | ACGTCACTGATTAGCTGACG+TGG | + | chr5.3:26920989-26921008 | MS.gene91931:intron | 50.0% |
| ! | CCAAAGAAGAGCGTAAGTGG+CGG | + | chr5.3:26919953-26919972 | MS.gene91931:CDS | 50.0% |
| ! | GAGCTTAAATGGCGGTGTCA+AGG | + | chr5.3:26919886-26919905 | MS.gene91931:CDS | 50.0% |
| !! | GGGTATCGTCGATTTCAACG+TGG | + | chr5.3:26921234-26921253 | MS.gene91931:CDS | 50.0% |
| ACCTGCCGTGAAAGCTGATG+AGG | + | chr5.3:26919361-26919380 | MS.gene91931:CDS | 55.0% | |
| AGTGGCTTGACCGTTGGACA+AGG | + | chr5.3:26919246-26919265 | MS.gene91931:CDS | 55.0% | |
| CAGTCTGACCCAGCAAAGCT+TGG | + | chr5.3:26921012-26921031 | MS.gene91931:intron | 55.0% | |
| CCGCCACTTACGCTCTTCTT+TGG | - | chr5.3:26919956-26919975 | None:intergenic | 55.0% | |
| CCTGCCGTGAAAGCTGATGA+GGG | + | chr5.3:26919362-26919381 | MS.gene91931:CDS | 55.0% | |
| GCTGATGAGGGCTCAAGTTC+TGG | + | chr5.3:26919374-26919393 | MS.gene91931:CDS | 55.0% | |
| GGAGACGTAAACCGCTACGA+CGG | - | chr5.3:26921326-26921345 | None:intergenic | 55.0% | |
| GGGCAAGACTCTTCCGACTT+TGG | - | chr5.3:26919656-26919675 | None:intergenic | 55.0% | |
| TCATCTTCAAGGGACGGGAC+TGG | + | chr5.3:26920730-26920749 | MS.gene91931:CDS | 55.0% | |
| TGAGCGGAAGAGGAGTTGCA+AGG | + | chr5.3:26920692-26920711 | MS.gene91931:CDS | 55.0% | |
| ! | GGCGGTGCCAAAGAAGAGAA+AGG | + | chr5.3:26919971-26919990 | MS.gene91931:CDS | 55.0% |
| !! | ACAGTGCAAGCATTGGCTCG+TGG | + | chr5.3:26918121-26918140 | MS.gene91931:CDS | 55.0% |
| !! | TGACTCGGTGTCGGCTGAAA+AGG | + | chr5.3:26919310-26919329 | MS.gene91931:CDS | 55.0% |
| CCCTCATCAGCTTTCACGGC+AGG | - | chr5.3:26919365-26919384 | None:intergenic | 60.0% | |
| GACAACAACCGCAACAGCGG+CGG | - | chr5.3:26921269-26921288 | None:intergenic | 60.0% | |
| GACGTAAACCGCTACGACGG+CGG | - | chr5.3:26921323-26921342 | None:intergenic | 60.0% | |
| GATGTTTCAGAGCAGGGGCC+AGG | + | chr5.3:26919596-26919615 | MS.gene91931:CDS | 60.0% | |
| GTAAACCGCTACGACGGCGG+CGG | - | chr5.3:26921320-26921339 | None:intergenic | 65.0% | |
| TGTATCCGCCGCCGTCGTAG+CGG | + | chr5.3:26921312-26921331 | MS.gene91931:CDS | 65.0% | |
| TGTCGTCTCCGCCGCTGTTG+CGG | + | chr5.3:26921258-26921277 | MS.gene91931:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 26917907 | 26921383 | 26917907 | ID=MS.gene91931 |
| chr5.3 | mRNA | 26917907 | 26921383 | 26917907 | ID=MS.gene91931.t1;Parent=MS.gene91931 |
| chr5.3 | exon | 26917907 | 26917921 | 26917907 | ID=MS.gene91931.t1.exon1;Parent=MS.gene91931.t1 |
| chr5.3 | CDS | 26917907 | 26917921 | 26917907 | ID=cds.MS.gene91931.t1;Parent=MS.gene91931.t1 |
| chr5.3 | exon | 26918007 | 26918177 | 26918007 | ID=MS.gene91931.t1.exon2;Parent=MS.gene91931.t1 |
| chr5.3 | CDS | 26918007 | 26918177 | 26918007 | ID=cds.MS.gene91931.t1;Parent=MS.gene91931.t1 |
| chr5.3 | exon | 26918419 | 26918499 | 26918419 | ID=MS.gene91931.t1.exon3;Parent=MS.gene91931.t1 |
| chr5.3 | CDS | 26918419 | 26918499 | 26918419 | ID=cds.MS.gene91931.t1;Parent=MS.gene91931.t1 |
| chr5.3 | exon | 26919173 | 26920751 | 26919173 | ID=MS.gene91931.t1.exon4;Parent=MS.gene91931.t1 |
| chr5.3 | CDS | 26919173 | 26920751 | 26919173 | ID=cds.MS.gene91931.t1;Parent=MS.gene91931.t1 |
| chr5.3 | exon | 26921223 | 26921383 | 26921223 | ID=MS.gene91931.t1.exon5;Parent=MS.gene91931.t1 |
| chr5.3 | CDS | 26921223 | 26921383 | 26921223 | ID=cds.MS.gene91931.t1;Parent=MS.gene91931.t1 |
| Gene Sequence |
| Protein sequence |
