Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92665.t1 | XP_003599445.2 | 96.5 | 1052 | 37 | 0 | 1 | 1052 | 1 | 1052 | 0.00E+00 | 1884.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92665.t1 | Q9LFS8 | 59.9 | 1038 | 416 | 0 | 3 | 1040 | 2 | 1039 | 0.0e+00 | 1161.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92665.t1 | G7J0X6 | 96.5 | 1052 | 37 | 0 | 1 | 1052 | 1 | 1052 | 0.0e+00 | 1884.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050838 | MS.gene92665 | 0.823497 | 1.34E-53 | -1.69E-46 |
| MS.gene056181 | MS.gene92665 | 0.804069 | 2.58E-49 | -1.69E-46 |
| MS.gene059171 | MS.gene92665 | 0.801193 | 1.01E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene99872 | MS.gene92665 | PPI |
| MS.gene043643 | MS.gene92665 | PPI |
| MS.gene043595 | MS.gene92665 | PPI |
| MS.gene043645 | MS.gene92665 | PPI |
| MS.gene043593 | MS.gene92665 | PPI |
| MS.gene064353 | MS.gene92665 | PPI |
| MS.gene035825 | MS.gene92665 | PPI |
| MS.gene73093 | MS.gene92665 | PPI |
| MS.gene035826 | MS.gene92665 | PPI |
| MS.gene064351 | MS.gene92665 | PPI |
| MS.gene035828 | MS.gene92665 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92665.t1 | MTR_3g033470 | 97.909 | 1052 | 22 | 0 | 1 | 1052 | 1 | 1052 | 0.0 | 2129 |
| MS.gene92665.t1 | MTR_4g115050 | 94.044 | 1041 | 62 | 0 | 12 | 1052 | 1 | 1041 | 0.0 | 1998 |
| MS.gene92665.t1 | MTR_5g036370 | 81.679 | 1048 | 191 | 1 | 5 | 1052 | 6 | 1052 | 0.0 | 1739 |
| MS.gene92665.t1 | MTR_5g036330 | 89.212 | 241 | 26 | 0 | 812 | 1052 | 1 | 241 | 2.48e-154 | 457 |
| MS.gene92665.t1 | MTR_5g036300 | 73.387 | 124 | 19 | 2 | 912 | 1032 | 2 | 114 | 9.43e-49 | 169 |
| MS.gene92665.t1 | MTR_4g061050 | 23.096 | 394 | 242 | 12 | 22 | 366 | 22 | 403 | 4.05e-13 | 74.3 |
| MS.gene92665.t1 | MTR_4g036760 | 24.045 | 445 | 248 | 15 | 21 | 394 | 22 | 447 | 7.45e-13 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92665.t1 | AT5G15920 | 61.524 | 1037 | 399 | 0 | 5 | 1041 | 4 | 1040 | 0.0 | 1287 |
| MS.gene92665.t1 | AT3G47460 | 23.146 | 445 | 277 | 16 | 23 | 424 | 2 | 424 | 3.44e-13 | 74.7 |
| MS.gene92665.t1 | AT3G47460 | 23.146 | 445 | 277 | 16 | 23 | 424 | 2 | 424 | 3.56e-13 | 74.7 |
| MS.gene92665.t1 | AT5G61460 | 23.293 | 249 | 172 | 5 | 13 | 244 | 6 | 252 | 2.44e-11 | 68.6 |
Find 214 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTAGTAATTCCCAATTT+TGG | 0.071387 | 3.1:-23945211 | None:intergenic |
| AACATCTTCCTTTCATTTAT+TGG | 0.074155 | 3.1:-23951380 | None:intergenic |
| TTCTACATGTTTCAGTTTAT+TGG | 0.091865 | 3.1:+23945154 | MS.gene92665:intron |
| TTGTAATTTGCTCCTCTTTA+TGG | 0.099665 | 3.1:-23935546 | None:intergenic |
| AATTGGGAATTACTAGTTTA+TGG | 0.115202 | 3.1:+23945215 | MS.gene92665:CDS |
| GACTAAAAGTTTCATTTATC+TGG | 0.131837 | 3.1:-23950460 | None:intergenic |
| ATCTCATCAACAACTCTAAA+TGG | 0.146895 | 3.1:-23951260 | None:intergenic |
| CATAAGTTCCATTCTCTTCT+TGG | 0.172420 | 3.1:-23940864 | None:intergenic |
| CCATAATGCAATTAAAATTA+AGG | 0.190460 | 3.1:+23946056 | MS.gene92665:CDS |
| AGCACTCACTGTGGTGTATT+TGG | 0.192925 | 3.1:-23951431 | None:intergenic |
| AGCTGATGGGGTCCCAAAAT+TGG | 0.195674 | 3.1:+23945198 | MS.gene92665:CDS |
| GTGAAGCGGGGAGAAGATTC+TGG | 0.232032 | 3.1:+23935496 | MS.gene92665:CDS |
| CTTACATTGGCAGATATTTC+AGG | 0.233435 | 3.1:-23944828 | None:intergenic |
| GAATTCCACAAGGAGGTTTA+TGG | 0.241297 | 3.1:+23943724 | MS.gene92665:CDS |
| GATATGGACTTTGATCAATT+TGG | 0.248571 | 3.1:+23950612 | MS.gene92665:CDS |
| CCTCGATTGAATCTCGTAAT+TGG | 0.254987 | 3.1:+23935273 | MS.gene92665:CDS |
| ATATGTTATTATTGACAAAA+AGG | 0.257309 | 3.1:-23949912 | None:intergenic |
| ATATATACCTCAACTAAAAC+TGG | 0.263878 | 3.1:-23943748 | None:intergenic |
| GCAGATCTGGTAACAACTTT+GGG | 0.277791 | 3.1:-23951828 | None:intergenic |
| GTTAACTCCTGTGCAACTTC+TGG | 0.284125 | 3.1:+23937428 | MS.gene92665:CDS |
| TTGTAAAATTTGCAGGTTGA+TGG | 0.302713 | 3.1:+23943603 | MS.gene92665:intron |
| AGGAAATATTGTGCCCAAAA+AGG | 0.305620 | 3.1:+23936308 | MS.gene92665:intron |
| TCTTGGCATTGTCACTTATT+CGG | 0.308112 | 3.1:-23940847 | None:intergenic |
| TCATGAACAAATTGCTTCCT+TGG | 0.327808 | 3.1:+23945535 | MS.gene92665:CDS |
| CTTGAGTCAAATTATTTACT+TGG | 0.327965 | 3.1:-23936362 | None:intergenic |
| GTAATTGGGCCAAATGGTTC+TGG | 0.330469 | 3.1:+23935288 | MS.gene92665:CDS |
| CTTGTATGTGCTATTGCTCT+TGG | 0.333455 | 3.1:+23935321 | MS.gene92665:CDS |
| TTGCATGCATTGCGAAAATC+TGG | 0.335891 | 3.1:+23943652 | MS.gene92665:CDS |
| GAAAGGATAGCATACTTAAT+AGG | 0.342576 | 3.1:-23938113 | None:intergenic |
| GGAAAGAAGCTTTGTGAATC+AGG | 0.346798 | 3.1:+23945586 | MS.gene92665:CDS |
| CAAGAAGAGAATGGAACTTA+TGG | 0.353352 | 3.1:+23940865 | MS.gene92665:CDS |
| TACATATAAAAGTCAAATTC+AGG | 0.356363 | 3.1:+23950637 | MS.gene92665:CDS |
| TCAATCTCTAAAATGTTTCC+AGG | 0.357210 | 3.1:-23935204 | None:intergenic |
| TACGACTTTCTGCAGTTGCT+TGG | 0.358431 | 3.1:+23935448 | MS.gene92665:intron |
| TTTCAACAGATGGCTGTTGC+TGG | 0.358447 | 3.1:+23950488 | MS.gene92665:CDS |
| CAAGCAATTGTTAGGCGTAT+TGG | 0.366177 | 3.1:+23945853 | MS.gene92665:CDS |
| TGCAGATCTGGTAACAACTT+TGG | 0.372012 | 3.1:-23951829 | None:intergenic |
| TGGGCGAGCCACAAGTATTC+AGG | 0.373583 | 3.1:+23935468 | MS.gene92665:CDS |
| TACAAGGTGTCTGGCTGAAC+TGG | 0.374002 | 3.1:+23950078 | MS.gene92665:CDS |
| TCCCCGCGATCGGGACTTCT+TGG | 0.375328 | 3.1:+23944734 | MS.gene92665:CDS |
| TTTCAGGAGGCGGCTCTCTT+CGG | 0.376451 | 3.1:-23944812 | None:intergenic |
| CTTCTCAGATGAGCATGATA+TGG | 0.377932 | 3.1:+23950596 | MS.gene92665:intron |
| TCATCCTTGGGAAGTTCATA+AGG | 0.384937 | 3.1:-23941253 | None:intergenic |
| GTTAGCAAAGCTTGTTGATC+AGG | 0.388465 | 3.1:+23946008 | MS.gene92665:CDS |
| CAGCATTACGTTCCTTCAAC+TGG | 0.389030 | 3.1:-23937662 | None:intergenic |
| ATTAGATGCAAAGTGCAAAA+AGG | 0.390121 | 3.1:+23940817 | MS.gene92665:CDS |
| GGCTGAACTGGATAACATTA+AGG | 0.392082 | 3.1:+23950090 | MS.gene92665:CDS |
| AACACCTCCTTGACAGCAAC+AGG | 0.393672 | 3.1:-23944970 | None:intergenic |
| CATTGGTCTAAGTCTAGATA+TGG | 0.405667 | 3.1:+23945256 | MS.gene92665:CDS |
| GGAATTCATCGCGATGCTCT+TGG | 0.407101 | 3.1:-23943708 | None:intergenic |
| GCCTCACTATATTGCAGATC+TGG | 0.407453 | 3.1:-23951841 | None:intergenic |
| ACGACTTTCTGCAGTTGCTT+GGG | 0.410346 | 3.1:+23935449 | MS.gene92665:intron |
| TATGAGAAATTACCCTTTGA+GGG | 0.412265 | 3.1:-23951907 | None:intergenic |
| GTCAAGTTGCTTGGTACACT+TGG | 0.416024 | 3.1:+23943880 | MS.gene92665:CDS |
| TGGCTTGTGAAGTTGTATCT+TGG | 0.427489 | 3.1:-23949882 | None:intergenic |
| TGATGCTCCTGTTGCTGTCA+AGG | 0.428280 | 3.1:+23944963 | MS.gene92665:CDS |
| CACACTTACAATCTCATCCT+TGG | 0.433193 | 3.1:-23941266 | None:intergenic |
| GCTGATGGGGTCCCAAAATT+GGG | 0.435739 | 3.1:+23945199 | MS.gene92665:CDS |
| GAACTCTTTCCAGAACCATT+TGG | 0.439353 | 3.1:-23935297 | None:intergenic |
| TGACCAGTATAATTTAAAAC+TGG | 0.439540 | 3.1:-23944783 | None:intergenic |
| CTCGATTGAATCTCGTAATT+GGG | 0.446122 | 3.1:+23935274 | MS.gene92665:CDS |
| CATCCTTGGGAAGTTCATAA+GGG | 0.449595 | 3.1:-23941252 | None:intergenic |
| GCGTGAGAAGGCTGCAGCAA+AGG | 0.451443 | 3.1:+23938049 | MS.gene92665:CDS |
| ACTAAAAGTTTCATTTATCT+GGG | 0.451888 | 3.1:-23950459 | None:intergenic |
| TAACATATTGGAACAATATG+AGG | 0.452120 | 3.1:+23949927 | MS.gene92665:CDS |
| CTCAGCGCCCATCATCAATC+TGG | 0.453912 | 3.1:+23951093 | MS.gene92665:CDS |
| CACCAGAAAATCACTATCAT+TGG | 0.458529 | 3.1:+23945239 | MS.gene92665:CDS |
| GAGAGAGGGAATTGTGGAGT+TGG | 0.462077 | 3.1:+23943418 | MS.gene92665:CDS |
| TTCATGAAGCTCCCTTTCCT+CGG | 0.462694 | 3.1:-23945519 | None:intergenic |
| GCCTACTACAATTGAGGAGT+TGG | 0.468182 | 3.1:+23949849 | MS.gene92665:CDS |
| GTCTCTTCCAGAAGTTGCAC+AGG | 0.473226 | 3.1:-23937435 | None:intergenic |
| AATCTCGTAATTGGGCCAAA+TGG | 0.473861 | 3.1:+23935282 | MS.gene92665:CDS |
| CACTAGCAACAAGTCGGAAT+GGG | 0.474425 | 3.1:+23935585 | MS.gene92665:CDS |
| CTGAATGATCAAGATTAGAT+TGG | 0.476451 | 3.1:-23944999 | None:intergenic |
| TGGCCTATGCGGAGAGCCCC+AGG | 0.479460 | 3.1:+23935341 | MS.gene92665:CDS |
| GGGGAGGATGATTATATGCC+TGG | 0.481452 | 3.1:+23935186 | MS.gene92665:CDS |
| AGGAGCGACAAGCAATTGTT+AGG | 0.482410 | 3.1:+23945845 | MS.gene92665:CDS |
| CACCAAGAAGTCCCGATCGC+GGG | 0.483962 | 3.1:-23944736 | None:intergenic |
| ACGAGATTCAATCGAGGCCC+GGG | 0.484233 | 3.1:-23935267 | None:intergenic |
| TATTCAGGCATTTGTGAAGC+GGG | 0.485114 | 3.1:+23935483 | MS.gene92665:CDS |
| TGAACAAATTGCTTCCTTGG+AGG | 0.485274 | 3.1:+23945538 | MS.gene92665:CDS |
| GTTGTTGATGAGATCAATCA+AGG | 0.485873 | 3.1:+23951269 | MS.gene92665:CDS |
| TGAAGCGGGGAGAAGATTCT+GGG | 0.486260 | 3.1:+23935497 | MS.gene92665:CDS |
| TCTCGGTATCAACTCTCGTT+TGG | 0.486444 | 3.1:+23944930 | MS.gene92665:CDS |
| TTTCATTGAATTTGATGCAA+AGG | 0.487383 | 3.1:+23946551 | MS.gene92665:CDS |
| GGATCTGAGCTCCGAGGAAA+GGG | 0.487507 | 3.1:+23945508 | MS.gene92665:CDS |
| GAAGGAATCTACAAGGTGTC+TGG | 0.489449 | 3.1:+23950069 | MS.gene92665:CDS |
| AGAATGTAGACAGAAGCTTA+TGG | 0.491081 | 3.1:+23948402 | MS.gene92665:CDS |
| AGAAGCACAAAATAAGCAAA+AGG | 0.492099 | 3.1:+23945825 | MS.gene92665:CDS |
| TACGAGATTCAATCGAGGCC+CGG | 0.492221 | 3.1:-23935268 | None:intergenic |
| AACACAGGATCCCCGCGATC+GGG | 0.493268 | 3.1:+23944725 | MS.gene92665:CDS |
| TTGGATGTTAAACCTCTGAA+TGG | 0.494697 | 3.1:-23936343 | None:intergenic |
| TCTCATCAACAACTCTAAAT+GGG | 0.495363 | 3.1:-23951259 | None:intergenic |
| GTATGAGAAATTACCCTTTG+AGG | 0.496181 | 3.1:-23951908 | None:intergenic |
| GATGGACGAGTTGAGGAAGC+AGG | 0.496512 | 3.1:+23941153 | MS.gene92665:CDS |
| ATCTAGAGGGTCAAGTTGCT+TGG | 0.497651 | 3.1:+23943871 | MS.gene92665:CDS |
| AGAAATTCCTTCTCTAGGTC+GGG | 0.499819 | 3.1:-23948463 | None:intergenic |
| TCGCAATGCATGCAAACACT+TGG | 0.502771 | 3.1:-23943644 | None:intergenic |
| TTAGATGCCTACTACAATTG+AGG | 0.503994 | 3.1:+23949843 | MS.gene92665:intron |
| CCTCAAGAAATTCCTTCTCT+AGG | 0.511891 | 3.1:-23948468 | None:intergenic |
| ATAAGTGCACGATGTTGCTC+TGG | 0.514176 | 3.1:-23937486 | None:intergenic |
| AAGAAATTCCTTCTCTAGGT+CGG | 0.514868 | 3.1:-23948464 | None:intergenic |
| TCCAACTCCTCAATTGTAGT+AGG | 0.515741 | 3.1:-23949850 | None:intergenic |
| ACACTTACAATCTCATCCTT+GGG | 0.518016 | 3.1:-23941265 | None:intergenic |
| AGGAACTTTAAACCAGTTGA+AGG | 0.518067 | 3.1:+23937650 | MS.gene92665:CDS |
| TAGACTGAGAGAGGGAATTG+TGG | 0.518288 | 3.1:+23943412 | MS.gene92665:CDS |
| AGGATCTGAGCTCCGAGGAA+AGG | 0.519212 | 3.1:+23945507 | MS.gene92665:CDS |
| TGCAGCAAAGGAGCTTGAGA+AGG | 0.522295 | 3.1:+23938061 | MS.gene92665:CDS |
| CAACCTGGGGCTCTCCGCAT+AGG | 0.523869 | 3.1:-23935344 | None:intergenic |
| GCACATTAAGATTACCTTGA+GGG | 0.528192 | 3.1:+23935519 | MS.gene92665:CDS |
| GTACCCCTCCAGATTGATGA+TGG | 0.530960 | 3.1:-23951101 | None:intergenic |
| TTTAAATGTGAGGGACATTG+AGG | 0.531854 | 3.1:+23945487 | MS.gene92665:CDS |
| ATATGAGGCTCGTCAGAGAC+AGG | 0.533677 | 3.1:+23949942 | MS.gene92665:CDS |
| TTTGAGGGTTGCTCAATCCA+AGG | 0.533889 | 3.1:-23951892 | None:intergenic |
| CCACGAGGTTTCTCAATGTA+GGG | 0.535694 | 3.1:-23950436 | None:intergenic |
| GTCTCAGATCAATCTCATGC+TGG | 0.536098 | 3.1:+23943846 | MS.gene92665:CDS |
| ACACTAGCAACAAGTCGGAA+TGG | 0.536162 | 3.1:+23935584 | MS.gene92665:CDS |
| TGACAATGCCAAGAAGAGAA+TGG | 0.536503 | 3.1:+23940856 | MS.gene92665:CDS |
| ACAAAGAGATGGACGAGTTG+AGG | 0.537247 | 3.1:+23941146 | MS.gene92665:CDS |
| TTGGATTGAGCAACCCTCAA+AGG | 0.539296 | 3.1:+23951894 | MS.gene92665:CDS |
| GTTGCTGGAGAAGTTTCACT+AGG | 0.539741 | 3.1:+23950503 | MS.gene92665:CDS |
| AAAACTCGATGCTGACAAGA+AGG | 0.542595 | 3.1:+23950051 | MS.gene92665:CDS |
| TCTTACCAGATGCGTGCTCT+CGG | 0.544720 | 3.1:+23944913 | MS.gene92665:intron |
| TAACACAGGATCCCCGCGAT+CGG | 0.545496 | 3.1:+23944724 | MS.gene92665:CDS |
| GGCTGAATATCGTGAAGCTA+AGG | 0.546055 | 3.1:+23938025 | MS.gene92665:CDS |
| TGGATTGAGCAACCCTCAAA+GGG | 0.546089 | 3.1:+23951895 | MS.gene92665:CDS |
| TTATAGGAGGTAGAATTACA+AGG | 0.546153 | 3.1:+23941118 | MS.gene92665:intron |
| TTGGCAGATATTTCAGGAGG+CGG | 0.549355 | 3.1:-23944822 | None:intergenic |
| GATTACTTAAAATGTAAACC+CGG | 0.551566 | 3.1:+23935249 | MS.gene92665:CDS |
| CGATGTTGCTCTGGAAGTTG+TGG | 0.553682 | 3.1:-23937477 | None:intergenic |
| ATACTATTCACTAGAAGTTG+AGG | 0.553846 | 3.1:-23945316 | None:intergenic |
| ACTTCTGGAAGAGACAGAAA+AGG | 0.555047 | 3.1:+23937443 | MS.gene92665:CDS |
| TGAATGTAATGAATGGCCCT+TGG | 0.555314 | 3.1:+23951875 | MS.gene92665:CDS |
| AAGAGATGAACTTCTTGCCA+AGG | 0.555563 | 3.1:+23937716 | MS.gene92665:CDS |
| CTATTTAGATTTAAATGTGA+GGG | 0.555671 | 3.1:+23945478 | MS.gene92665:intron |
| TGATAATCAGTGTGGACCGC+TGG | 0.555933 | 3.1:+23951990 | MS.gene92665:intron |
| AGTATTATCACTGGACATGT+TGG | 0.556987 | 3.1:+23952023 | MS.gene92665:CDS |
| CCTAGAGAAGGAATTTCTTG+AGG | 0.557053 | 3.1:+23948468 | MS.gene92665:CDS |
| GAAAAGCAAACTGAAATCGA+TGG | 0.558159 | 3.1:+23945960 | MS.gene92665:CDS |
| GAAACTGATCAGAAAGCTGA+TGG | 0.558582 | 3.1:+23945184 | MS.gene92665:CDS |
| TGCTAATCTTCGTAAGCAGT+TGG | 0.558627 | 3.1:+23945610 | MS.gene92665:CDS |
| TATAGGAGGTAGAATTACAA+GGG | 0.559652 | 3.1:+23941119 | MS.gene92665:intron |
| ACTTCTTGGTGAACAACCTA+CGG | 0.563548 | 3.1:+23944748 | MS.gene92665:CDS |
| CTAAGCGCCACAAAATCAGC+AGG | 0.568080 | 3.1:+23934235 | MS.gene92665:CDS |
| CTGGTACATCGTAGTTCCGT+AGG | 0.569457 | 3.1:-23944764 | None:intergenic |
| TGCATTGAAGCATGTTGAGC+TGG | 0.570946 | 3.1:+23937521 | MS.gene92665:CDS |
| AAAAGAAATTGCCATGGCTG+AGG | 0.571274 | 3.1:+23937988 | MS.gene92665:CDS |
| TACTATTCACTAGAAGTTGA+GGG | 0.572061 | 3.1:-23945315 | None:intergenic |
| TTGAGGGTTGCTCAATCCAA+GGG | 0.572526 | 3.1:-23951891 | None:intergenic |
| GATCGATGGAGTATTATCAC+TGG | 0.573187 | 3.1:+23952014 | MS.gene92665:CDS |
| GGATCTTCTTGTTGAAGCCG+CGG | 0.574639 | 3.1:+23946494 | MS.gene92665:intron |
| TGCATGCATTGCGAAAATCT+GGG | 0.575622 | 3.1:+23943653 | MS.gene92665:CDS |
| GATCTTCTTGTTGAAGCCGC+GGG | 0.577579 | 3.1:+23946495 | MS.gene92665:CDS |
| AGCGCCCATCATCAATCTGG+AGG | 0.582072 | 3.1:+23951096 | MS.gene92665:CDS |
| ATCTCATGCTGGATATCTAG+AGG | 0.584471 | 3.1:+23943857 | MS.gene92665:CDS |
| GAAGAGACAGAAAAGGCTGT+TGG | 0.586153 | 3.1:+23937450 | MS.gene92665:CDS |
| AGCAAAGGAGCTTGAGAAGG+CGG | 0.586361 | 3.1:+23938064 | MS.gene92665:CDS |
| CACAAATGCCTGAATACTTG+TGG | 0.586797 | 3.1:-23935476 | None:intergenic |
| AAACTGATCAGAAAGCTGAT+GGG | 0.587636 | 3.1:+23945185 | MS.gene92665:CDS |
| TGAAGCTAAGGAGCGTGAGA+AGG | 0.588670 | 3.1:+23938037 | MS.gene92665:CDS |
| TTACCAGCATAGACTGAGAG+AGG | 0.589240 | 3.1:+23943403 | MS.gene92665:intron |
| GTATTCAGGCATTTGTGAAG+CGG | 0.589507 | 3.1:+23935482 | MS.gene92665:CDS |
| GAATGGATCCAATAAATGAA+AGG | 0.594716 | 3.1:+23951372 | MS.gene92665:CDS |
| AGTTGCTTGGTACACTTGGA+AGG | 0.595673 | 3.1:+23943884 | MS.gene92665:CDS |
| CACATTAAGATTACCTTGAG+GGG | 0.596280 | 3.1:+23935520 | MS.gene92665:CDS |
| TGTGGACCGCTGGTGATCGA+TGG | 0.597266 | 3.1:+23952000 | MS.gene92665:CDS |
| CTGGGCCATAAACCTCCTTG+TGG | 0.598562 | 3.1:-23943729 | None:intergenic |
| GCCACGAGGTTTCTCAATGT+AGG | 0.601181 | 3.1:-23950437 | None:intergenic |
| CGCCCATCATCAATCTGGAG+GGG | 0.603760 | 3.1:+23951098 | MS.gene92665:CDS |
| ACCAAGAAGTCCCGATCGCG+GGG | 0.605568 | 3.1:-23944735 | None:intergenic |
| ACAAGGGAAGTACAAAGAGA+TGG | 0.607131 | 3.1:+23941135 | MS.gene92665:CDS |
| ATTACTTAAAATGTAAACCC+GGG | 0.608024 | 3.1:+23935250 | MS.gene92665:CDS |
| AAACCCTTATGAACTTCCCA+AGG | 0.608677 | 3.1:+23941249 | MS.gene92665:CDS |
| GCGCCCATCATCAATCTGGA+GGG | 0.610882 | 3.1:+23951097 | MS.gene92665:CDS |
| ACGTAATGCTGAATTAGAGA+AGG | 0.611337 | 3.1:+23937674 | MS.gene92665:CDS |
| AATGCAGTCTTTCATAACAC+AGG | 0.612682 | 3.1:+23944710 | MS.gene92665:intron |
| AGTATATTGAATGTAATGAA+TGG | 0.615421 | 3.1:+23951868 | MS.gene92665:CDS |
| TATGGAGAAAGAGAATCGAT+TGG | 0.615838 | 3.1:+23940883 | MS.gene92665:CDS |
| TTCATATCATACCTCAGCCA+TGG | 0.617052 | 3.1:-23937999 | None:intergenic |
| AACTGATCAGAAAGCTGATG+GGG | 0.617295 | 3.1:+23945186 | MS.gene92665:CDS |
| CTGACAAGAAGGAATCTACA+AGG | 0.619435 | 3.1:+23950062 | MS.gene92665:CDS |
| TACCCCTCCAGATTGATGAT+GGG | 0.619544 | 3.1:-23951100 | None:intergenic |
| CAGATCTGGTAACAACTTTG+GGG | 0.622648 | 3.1:-23951827 | None:intergenic |
| GCTGAGGTATGATATGAAGC+AGG | 0.623097 | 3.1:+23938004 | MS.gene92665:CDS |
| AACTCACAGACCCTGTCTTG+CGG | 0.625196 | 3.1:-23937399 | None:intergenic |
| GCTTACACCCGACCTAGAGA+AGG | 0.631541 | 3.1:+23948456 | MS.gene92665:CDS |
| GCATGCATTGCGAAAATCTG+GGG | 0.632232 | 3.1:+23943654 | MS.gene92665:CDS |
| AATAAACACTAGCAACAAGT+CGG | 0.633220 | 3.1:+23935579 | MS.gene92665:CDS |
| ACCAGATCTGCAATATAGTG+AGG | 0.635581 | 3.1:+23951840 | MS.gene92665:CDS |
| TCTTTAGATTGGAGAAGCGG+AGG | 0.635604 | 3.1:+23948234 | MS.gene92665:intron |
| TATATACCTCAACTAAAACT+GGG | 0.637444 | 3.1:-23943747 | None:intergenic |
| CTTTGATGAAGTGTAAAGAG+AGG | 0.639262 | 3.1:+23943510 | MS.gene92665:CDS |
| ACTATTTAGATTTAAATGTG+AGG | 0.639567 | 3.1:+23945477 | MS.gene92665:intron |
| ATTCAGGCATTTGTGAAGCG+GGG | 0.642294 | 3.1:+23935484 | MS.gene92665:CDS |
| ACATTAAGATTACCTTGAGG+GGG | 0.645553 | 3.1:+23935521 | MS.gene92665:CDS |
| TGCTCCTGTTGCTGTCAAGG+AGG | 0.645592 | 3.1:+23944966 | MS.gene92665:CDS |
| TGAGGAAGCAGGAAGAAACT+CGG | 0.649381 | 3.1:+23941164 | MS.gene92665:CDS |
| TACCAGCATAGACTGAGAGA+GGG | 0.652689 | 3.1:+23943404 | MS.gene92665:intron |
| ACATTGGCAGATATTTCAGG+AGG | 0.653264 | 3.1:-23944825 | None:intergenic |
| ATGTGGCTGAAACCATTCAG+AGG | 0.657774 | 3.1:+23936331 | MS.gene92665:CDS |
| GGCACATTAAGATTACCTTG+AGG | 0.658678 | 3.1:+23935518 | MS.gene92665:CDS |
| TCTCATGCTGGATATCTAGA+GGG | 0.660256 | 3.1:+23943858 | MS.gene92665:CDS |
| TCACCAAGAAGTCCCGATCG+CGG | 0.665560 | 3.1:-23944737 | None:intergenic |
| CATTAAGATTACCTTGAGGG+GGG | 0.680350 | 3.1:+23935522 | MS.gene92665:CDS |
| GCTATTGCTCTTGGCCTATG+CGG | 0.686307 | 3.1:+23935330 | MS.gene92665:CDS |
| CATTGAGGATCTGAGCTCCG+AGG | 0.695183 | 3.1:+23945502 | MS.gene92665:CDS |
| TTTCATTTATCTGGGCCACG+AGG | 0.696303 | 3.1:-23950451 | None:intergenic |
| CCCTACATTGAGAAACCTCG+TGG | 0.704731 | 3.1:+23950436 | MS.gene92665:CDS |
| CCAATTACGAGATTCAATCG+AGG | 0.705532 | 3.1:-23935273 | None:intergenic |
| GCATCGCGATGAATTCCACA+AGG | 0.711479 | 3.1:+23943714 | MS.gene92665:CDS |
| AATACTCCATCGATCACCAG+CGG | 0.716795 | 3.1:-23952006 | None:intergenic |
| TCGCGATGAATTCCACAAGG+AGG | 0.719403 | 3.1:+23943717 | MS.gene92665:CDS |
| ACTATGCTAAGTCAATTGCG+CGG | 0.733384 | 3.1:+23948434 | MS.gene92665:CDS |
| AAAACTTCGTCTGTAACCCG+CGG | 0.753881 | 3.1:-23946511 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 23934216 | 23952061 | 23934216 | ID=MS.gene92665 |
| chr3.1 | mRNA | 23934216 | 23952061 | 23934216 | ID=MS.gene92665.t1;Parent=MS.gene92665 |
| chr3.1 | exon | 23934216 | 23934256 | 23934216 | ID=MS.gene92665.t1.exon1;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23934216 | 23934256 | 23934216 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23935185 | 23935362 | 23935185 | ID=MS.gene92665.t1.exon2;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23935185 | 23935362 | 23935185 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23935463 | 23935616 | 23935463 | ID=MS.gene92665.t1.exon3;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23935463 | 23935616 | 23935463 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23936310 | 23936383 | 23936310 | ID=MS.gene92665.t1.exon4;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23936310 | 23936383 | 23936310 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23937393 | 23937542 | 23937393 | ID=MS.gene92665.t1.exon5;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23937393 | 23937542 | 23937393 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23937633 | 23937737 | 23937633 | ID=MS.gene92665.t1.exon6;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23937633 | 23937737 | 23937633 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23937975 | 23938120 | 23937975 | ID=MS.gene92665.t1.exon7;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23937975 | 23938120 | 23937975 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23940793 | 23940904 | 23940793 | ID=MS.gene92665.t1.exon8;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23940793 | 23940904 | 23940793 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23941124 | 23941279 | 23941124 | ID=MS.gene92665.t1.exon9;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23941124 | 23941279 | 23941124 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23943410 | 23943531 | 23943410 | ID=MS.gene92665.t1.exon10;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23943410 | 23943531 | 23943410 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23943618 | 23943762 | 23943618 | ID=MS.gene92665.t1.exon11;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23943618 | 23943762 | 23943618 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23943840 | 23943905 | 23943840 | ID=MS.gene92665.t1.exon12;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23943840 | 23943905 | 23943840 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23944717 | 23944845 | 23944717 | ID=MS.gene92665.t1.exon13;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23944717 | 23944845 | 23944717 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23944922 | 23945020 | 23944922 | ID=MS.gene92665.t1.exon14;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23944922 | 23945020 | 23944922 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23945169 | 23945334 | 23945169 | ID=MS.gene92665.t1.exon15;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23945169 | 23945334 | 23945169 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23945486 | 23945631 | 23945486 | ID=MS.gene92665.t1.exon16;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23945486 | 23945631 | 23945486 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23945811 | 23945874 | 23945811 | ID=MS.gene92665.t1.exon17;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23945811 | 23945874 | 23945811 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23945953 | 23946077 | 23945953 | ID=MS.gene92665.t1.exon18;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23945953 | 23946077 | 23945953 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23946495 | 23946572 | 23946495 | ID=MS.gene92665.t1.exon19;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23946495 | 23946572 | 23946495 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23948241 | 23948313 | 23948241 | ID=MS.gene92665.t1.exon20;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23948241 | 23948313 | 23948241 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23948386 | 23948489 | 23948386 | ID=MS.gene92665.t1.exon21;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23948386 | 23948489 | 23948386 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23949847 | 23949963 | 23949847 | ID=MS.gene92665.t1.exon22;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23949847 | 23949963 | 23949847 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23950034 | 23950111 | 23950034 | ID=MS.gene92665.t1.exon23;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23950034 | 23950111 | 23950034 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23950425 | 23950524 | 23950425 | ID=MS.gene92665.t1.exon24;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23950425 | 23950524 | 23950425 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23950604 | 23950658 | 23950604 | ID=MS.gene92665.t1.exon25;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23950604 | 23950658 | 23950604 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23951071 | 23951119 | 23951071 | ID=MS.gene92665.t1.exon26;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23951071 | 23951119 | 23951071 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23951203 | 23951290 | 23951203 | ID=MS.gene92665.t1.exon27;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23951203 | 23951290 | 23951203 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23951372 | 23951444 | 23951372 | ID=MS.gene92665.t1.exon28;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23951372 | 23951444 | 23951372 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23951813 | 23951916 | 23951813 | ID=MS.gene92665.t1.exon29;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23951813 | 23951916 | 23951813 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| chr3.1 | exon | 23952000 | 23952061 | 23952000 | ID=MS.gene92665.t1.exon30;Parent=MS.gene92665.t1 |
| chr3.1 | CDS | 23952000 | 23952061 | 23952000 | ID=cds.MS.gene92665.t1;Parent=MS.gene92665.t1 |
| Gene Sequence |
| Protein sequence |
