Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92778.t1 | XP_003623651.1 | 97.2 | 356 | 7 | 2 | 1 | 356 | 1 | 353 | 5.00E-160 | 573.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92778.t1 | Q9C9Z2 | 73.5 | 230 | 59 | 1 | 99 | 326 | 98 | 327 | 9.2e-94 | 345.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92778.t1 | G7KY81 | 97.2 | 356 | 7 | 2 | 1 | 356 | 1 | 353 | 3.6e-160 | 573.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene92778 | -0.810922 | 9.06E-51 | -1.69E-46 |
| MS.gene050577 | MS.gene92778 | -0.806351 | 8.58E-50 | -1.69E-46 |
| MS.gene052606 | MS.gene92778 | 0.806934 | 6.46E-50 | -1.69E-46 |
| MS.gene05470 | MS.gene92778 | -0.811758 | 5.96E-51 | -1.69E-46 |
| MS.gene05589 | MS.gene92778 | -0.80549 | 1.30E-49 | -1.69E-46 |
| MS.gene056694 | MS.gene92778 | 0.806072 | 9.82E-50 | -1.69E-46 |
| MS.gene060982 | MS.gene92778 | -0.804226 | 2.39E-49 | -1.69E-46 |
| MS.gene061044 | MS.gene92778 | 0.803841 | 2.88E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92778.t1 | MTR_7g074070 | 97.191 | 356 | 7 | 2 | 1 | 356 | 1 | 353 | 0.0 | 684 |
| MS.gene92778.t1 | MTR_7g074090 | 77.126 | 341 | 63 | 5 | 1 | 340 | 1 | 327 | 1.08e-164 | 463 |
| MS.gene92778.t1 | MTR_7g074090 | 77.126 | 341 | 63 | 5 | 1 | 340 | 1 | 327 | 3.11e-164 | 464 |
| MS.gene92778.t1 | MTR_7g074090 | 77.126 | 341 | 63 | 5 | 1 | 340 | 19 | 345 | 4.22e-164 | 464 |
| MS.gene92778.t1 | MTR_7g064130 | 34.498 | 229 | 130 | 8 | 110 | 321 | 223 | 448 | 4.75e-29 | 117 |
| MS.gene92778.t1 | MTR_0013s0150 | 33.197 | 244 | 143 | 6 | 94 | 321 | 138 | 377 | 3.42e-28 | 113 |
| MS.gene92778.t1 | MTR_2g084605 | 31.739 | 230 | 135 | 8 | 110 | 321 | 167 | 392 | 1.15e-23 | 101 |
| MS.gene92778.t1 | MTR_4g077000 | 30.568 | 229 | 142 | 4 | 108 | 321 | 162 | 388 | 3.27e-23 | 99.8 |
| MS.gene92778.t1 | MTR_3g033620 | 29.825 | 228 | 143 | 6 | 108 | 321 | 163 | 387 | 7.14e-22 | 95.9 |
| MS.gene92778.t1 | MTR_3g071970 | 29.661 | 236 | 145 | 6 | 106 | 321 | 482 | 716 | 9.78e-21 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92778.t1 | AT3G08640 | 67.578 | 256 | 73 | 2 | 91 | 344 | 90 | 337 | 5.56e-124 | 360 |
| MS.gene92778.t1 | AT3G08630 | 72.581 | 248 | 63 | 3 | 99 | 344 | 95 | 339 | 4.19e-123 | 358 |
| MS.gene92778.t1 | AT2G37860 | 34.694 | 245 | 139 | 9 | 96 | 321 | 190 | 432 | 4.50e-30 | 119 |
| MS.gene92778.t1 | AT2G37860 | 34.694 | 245 | 139 | 9 | 96 | 321 | 190 | 432 | 4.50e-30 | 119 |
| MS.gene92778.t1 | AT5G12470 | 33.913 | 230 | 137 | 5 | 108 | 323 | 157 | 385 | 1.87e-27 | 111 |
| MS.gene92778.t1 | AT5G22790 | 34.498 | 229 | 131 | 7 | 110 | 321 | 207 | 433 | 1.98e-26 | 109 |
| MS.gene92778.t1 | AT3G56140 | 27.839 | 273 | 169 | 8 | 106 | 351 | 255 | 526 | 6.06e-21 | 94.4 |
| MS.gene92778.t1 | AT3G56140 | 27.839 | 273 | 169 | 8 | 106 | 351 | 474 | 745 | 1.41e-20 | 93.6 |
| MS.gene92778.t1 | AT3G56140 | 27.839 | 273 | 169 | 8 | 106 | 351 | 474 | 745 | 1.41e-20 | 93.6 |
| MS.gene92778.t1 | AT2G40400 | 28.151 | 238 | 150 | 6 | 106 | 323 | 465 | 701 | 2.21e-19 | 90.1 |
| MS.gene92778.t1 | AT2G40400 | 28.151 | 238 | 150 | 6 | 106 | 323 | 465 | 701 | 2.21e-19 | 90.1 |
| MS.gene92778.t1 | AT2G40400 | 27.273 | 187 | 118 | 4 | 106 | 275 | 465 | 650 | 3.67e-14 | 73.9 |
| MS.gene92778.t1 | AT2G37860 | 32.911 | 158 | 92 | 6 | 96 | 239 | 190 | 347 | 5.85e-14 | 72.4 |
| MS.gene92778.t1 | AT2G37860 | 32.911 | 158 | 92 | 6 | 96 | 239 | 190 | 347 | 5.85e-14 | 72.4 |
Find 98 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTTGGTGTCTCAAAATT+TGG | 0.158296 | 7.4:-30906771 | None:intergenic |
| AAATCAAAAGATTCGTCTTT+TGG | 0.178684 | 7.4:+30906321 | MS.gene92778:CDS |
| TCTCACTTGGGCTGCTCATA+TGG | 0.219592 | 7.4:+30906818 | MS.gene92778:CDS |
| GGTGTTACTGCTTGTGTCTT+AGG | 0.224033 | 7.4:+30906432 | MS.gene92778:CDS |
| TGCTTGTGTCTTAGGTGATA+TGG | 0.238811 | 7.4:+30906440 | MS.gene92778:CDS |
| ATGGCTTCAAGGCCTAATTT+TGG | 0.265088 | 7.4:+30906459 | MS.gene92778:CDS |
| AGGAGTGGTGGAGGTGGTGG+TGG | 0.265858 | 7.4:+30906252 | MS.gene92778:CDS |
| CTTAGGTACCAAACACTAAA+TGG | 0.273009 | 7.4:+30906855 | MS.gene92778:CDS |
| GGGTTTGGTGCTGGTCTTGC+TGG | 0.288595 | 7.4:+30906702 | MS.gene92778:CDS |
| AAGGGAAAGGGAGGAGGCTT+TGG | 0.288917 | 7.4:+30907061 | MS.gene92778:CDS |
| TGATCCACAGTTTCCTTTCA+AGG | 0.295775 | 7.4:+30906389 | MS.gene92778:CDS |
| GTGGTGGTGGAAGTGAAAAT+TGG | 0.309300 | 7.4:+30906268 | MS.gene92778:CDS |
| GATTAAGATGAGGAAGAAAA+TGG | 0.310266 | 7.4:+30906746 | MS.gene92778:CDS |
| TTCACTTTGTTGATGTTGTT+TGG | 0.316535 | 7.4:-30907094 | None:intergenic |
| AGTTCATTCAAACCAAAATT+AGG | 0.316870 | 7.4:-30906471 | None:intergenic |
| AGTCCTCGGTGTTGGTGCTT+AGG | 0.330475 | 7.4:+30906922 | MS.gene92778:CDS |
| TTTCACACTTATGTATCTAT+TGG | 0.333696 | 7.4:+30906536 | MS.gene92778:CDS |
| CTTTACTCAATTCTCTCACT+TGG | 0.338283 | 7.4:+30906805 | MS.gene92778:CDS |
| CTCACTTGGGCTGCTCATAT+GGG | 0.340036 | 7.4:+30906819 | MS.gene92778:CDS |
| AGTGGTGGAGGTGGTGGTGG+TGG | 0.340666 | 7.4:+30906255 | MS.gene92778:CDS |
| AGGGTTGTGAACAATGTTCT+TGG | 0.363107 | 7.4:+30906942 | MS.gene92778:CDS |
| GGCTCAAACATGTGACTCTT+AGG | 0.367133 | 7.4:-30906612 | None:intergenic |
| GTCCTCGGTGTTGGTGCTTA+GGG | 0.370179 | 7.4:+30906923 | MS.gene92778:CDS |
| TATCTATTGGCACCAACATT+AGG | 0.370401 | 7.4:+30906549 | MS.gene92778:CDS |
| TTAGGTACTTTGGTGTATAA+AGG | 0.371386 | 7.4:+30906660 | MS.gene92778:CDS |
| TGGTGGTGGAAGTGAAAATT+GGG | 0.371524 | 7.4:+30906269 | MS.gene92778:CDS |
| GGTAGGAGTGGTGGAGGTGG+TGG | 0.373035 | 7.4:+30906249 | MS.gene92778:CDS |
| GCTGCTGTTGGGTTTGGTGC+TGG | 0.378702 | 7.4:+30906693 | MS.gene92778:CDS |
| TGGGTTTCAGCAGTAATCTT+AGG | 0.384948 | 7.4:+30906838 | MS.gene92778:CDS |
| ATTGGATAGGTTAGGTACTT+TGG | 0.391020 | 7.4:+30906650 | MS.gene92778:CDS |
| ACTCAGCACCATTTAGTGTT+TGG | 0.392898 | 7.4:-30906863 | None:intergenic |
| TTGACAGGGTCACAGAGTTC+TGG | 0.398819 | 7.4:+30906993 | MS.gene92778:CDS |
| CACAGATCAAATGTCAACTA+TGG | 0.404843 | 7.4:+30906035 | None:intergenic |
| GCTGGTACAGCACTTTCAAA+TGG | 0.406836 | 7.4:+30906720 | MS.gene92778:CDS |
| TTTCAACCTTTGAGGCAAAT+GGG | 0.407646 | 7.4:-30906178 | None:intergenic |
| AAAGTAGGTGGAGCTTTGTT+TGG | 0.417477 | 7.4:-30906786 | None:intergenic |
| TTCTGAATGGATGGAGATCA+AGG | 0.437567 | 7.4:+30906358 | MS.gene92778:CDS |
| AGTGGTAGGAGTGGTGGAGG+TGG | 0.438626 | 7.4:+30906246 | MS.gene92778:CDS |
| GGACAAGATGCAAAGATTGC+AGG | 0.441836 | 7.4:-30906591 | None:intergenic |
| GGTTGAAAGGGAAAGGGAGG+AGG | 0.442157 | 7.4:+30907055 | MS.gene92778:CDS |
| TTGAGAAGGTTGAAAGGGAA+AGG | 0.445930 | 7.4:+30907048 | MS.gene92778:CDS |
| TCTTAGGTGATATGGCTTCA+AGG | 0.452850 | 7.4:+30906448 | MS.gene92778:CDS |
| AGGCAAATGGGGTGATGGGT+TGG | 0.454846 | 7.4:-30906166 | None:intergenic |
| ATTTCATTTGTCGGAGGTGA+TGG | 0.455661 | 7.4:+30906201 | MS.gene92778:CDS |
| TTTAGTTTATTGGATAGGTT+AGG | 0.459730 | 7.4:+30906642 | MS.gene92778:CDS |
| GTGAGAGAATTGAGTAAAGT+AGG | 0.460473 | 7.4:-30906801 | None:intergenic |
| CTGGTACAGCACTTTCAAAT+GGG | 0.460536 | 7.4:+30906721 | MS.gene92778:CDS |
| AGTGGTAGTGGTAGGAGTGG+TGG | 0.460912 | 7.4:+30906240 | MS.gene92778:CDS |
| GGTAGTGGTAGGAGTGGTGG+AGG | 0.467310 | 7.4:+30906243 | MS.gene92778:CDS |
| TCCTTTAGCATTCAAGTCCT+CGG | 0.468351 | 7.4:+30906908 | MS.gene92778:CDS |
| TGGTGAGAAGCCATCACAAT+TGG | 0.468522 | 7.4:+30907013 | MS.gene92778:CDS |
| TGAGAAGGTTGAAAGGGAAA+GGG | 0.469805 | 7.4:+30907049 | MS.gene92778:CDS |
| AGGTTGAAAATTTCATTTGT+CGG | 0.472233 | 7.4:+30906192 | MS.gene92778:CDS |
| GGAGGTGATGGTGTTGGAAG+TGG | 0.472567 | 7.4:+30906213 | MS.gene92778:CDS |
| GGTGTTGGAAGTGGTGGTAG+TGG | 0.474532 | 7.4:+30906222 | MS.gene92778:CDS |
| CATCACCCCATTTGCCTCAA+AGG | 0.475084 | 7.4:+30906172 | MS.gene92778:CDS |
| CTTTGAGGCAAATGGGGTGA+TGG | 0.480889 | 7.4:-30906171 | None:intergenic |
| GCTAATAATGATAATGATGA+TGG | 0.498198 | 7.4:+30906297 | MS.gene92778:CDS |
| TTTACTCAATTCTCTCACTT+GGG | 0.504007 | 7.4:+30906806 | MS.gene92778:CDS |
| GATTAGTTGAGAAGGTTGAA+AGG | 0.504478 | 7.4:+30907042 | MS.gene92778:CDS |
| GGAAGTGGTGGTAGTGGTAG+TGG | 0.504685 | 7.4:+30906228 | MS.gene92778:CDS |
| AGCATTCAAGTCCTCGGTGT+TGG | 0.506923 | 7.4:+30906914 | MS.gene92778:CDS |
| TCTTCCATCAAAACCTTGAA+AGG | 0.510674 | 7.4:-30906402 | None:intergenic |
| GGAGGATGGATTAGTTGAGA+AGG | 0.522393 | 7.4:+30907034 | MS.gene92778:CDS |
| CGGTTATTTAACTGTGGAGG+TGG | 0.526642 | 7.4:-30906126 | None:intergenic |
| TGGGTCTGTTTCTGAATGGA+TGG | 0.532651 | 7.4:+30906349 | MS.gene92778:CDS |
| AAGAGTCACATGTTTGAGCC+TGG | 0.535287 | 7.4:+30906615 | MS.gene92778:CDS |
| ACCGAGGACTTGAATGCTAA+AGG | 0.535657 | 7.4:-30906909 | None:intergenic |
| TGAGAAGCCATCACAATTGG+AGG | 0.536920 | 7.4:+30907016 | MS.gene92778:CDS |
| ATTAGTTGAGAAGGTTGAAA+GGG | 0.539886 | 7.4:+30907043 | MS.gene92778:CDS |
| GAAGGTTGAAAGGGAAAGGG+AGG | 0.545788 | 7.4:+30907052 | MS.gene92778:CDS |
| GCAGAAGAAGCTCCTAATGT+TGG | 0.549484 | 7.4:-30906561 | None:intergenic |
| TTTAACTGTGGAGGTGGTGA+TGG | 0.550712 | 7.4:-30906120 | None:intergenic |
| GGTGGTGATGGTAATGATGA+TGG | 0.550866 | 7.4:-30906108 | None:intergenic |
| TGGTGAGATATATAGAAGTA+CGG | 0.554630 | 7.4:-30906146 | None:intergenic |
| TTTGAGGCAAATGGGGTGAT+GGG | 0.555890 | 7.4:-30906170 | None:intergenic |
| GGTGATGGTGTTGGAAGTGG+TGG | 0.556383 | 7.4:+30906216 | MS.gene92778:CDS |
| AGAGAATTGAGTAAAGTAGG+TGG | 0.556420 | 7.4:-30906798 | None:intergenic |
| GTTGTGAACAATGTTCTTGG+AGG | 0.557461 | 7.4:+30906945 | MS.gene92778:CDS |
| TCCAATAAACTAAAAGCACC+AGG | 0.562983 | 7.4:-30906633 | None:intergenic |
| TTGAAAATTTCATTTGTCGG+AGG | 0.564054 | 7.4:+30906195 | MS.gene92778:CDS |
| TTTGTCGGAGGTGATGGTGT+TGG | 0.574457 | 7.4:+30906207 | MS.gene92778:CDS |
| TTCAACCTTTGAGGCAAATG+GGG | 0.575584 | 7.4:-30906177 | None:intergenic |
| AAATGGTGCTGAGTTTGTGT+TGG | 0.577853 | 7.4:+30906872 | MS.gene92778:CDS |
| GTGGTGGTAGTGGTAGTGGT+AGG | 0.581739 | 7.4:+30906232 | MS.gene92778:CDS |
| GCACGGCTTTGACCAGATGA+AGG | 0.588877 | 7.4:-30906075 | None:intergenic |
| AATCCATCCTCCAATTGTGA+TGG | 0.593843 | 7.4:-30907023 | None:intergenic |
| CAAATGGGTTGATTAAGATG+AGG | 0.597867 | 7.4:+30906736 | MS.gene92778:CDS |
| AAGCCATCACAATTGGAGGA+TGG | 0.611487 | 7.4:+30907020 | MS.gene92778:CDS |
| GGTAGTGGTAGTGGTAGGAG+TGG | 0.629951 | 7.4:+30906237 | MS.gene92778:CDS |
| GAAGTACGGTTATTTAACTG+TGG | 0.640467 | 7.4:-30906132 | None:intergenic |
| GTACGGTTATTTAACTGTGG+AGG | 0.641560 | 7.4:-30906129 | None:intergenic |
| AAAACCTTGAAAGGAAACTG+TGG | 0.648612 | 7.4:-30906393 | None:intergenic |
| GGTGGAAGTGAAAATTGGGG+TGG | 0.659226 | 7.4:+30906273 | MS.gene92778:CDS |
| ATGATGGAAATGAAAGTGCA+CGG | 0.675516 | 7.4:-30906092 | None:intergenic |
| TCTGAATGGATGGAGATCAA+GGG | 0.679128 | 7.4:+30906359 | MS.gene92778:CDS |
| GGTGGTGGAAGTGAAAATTG+GGG | 0.698233 | 7.4:+30906270 | MS.gene92778:CDS |
| AACCCTAAGCACCAACACCG+AGG | 0.721627 | 7.4:-30906925 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AGGTTGAAAATTTCATTTGT+CGG | + | chr7.4:30906192-30906211 | MS.gene92778:CDS | 25.0% |
| ! | AGTTCATTCAAACCAAAATT+AGG | - | chr7.4:30906474-30906493 | None:intergenic | 25.0% |
| ! | TTTCACACTTATGTATCTAT+TGG | + | chr7.4:30906536-30906555 | MS.gene92778:CDS | 25.0% |
| !! | AAATCAAAAGATTCGTCTTT+TGG | + | chr7.4:30906321-30906340 | MS.gene92778:CDS | 25.0% |
| !! | AATCAAAAGATTCGTCTTTT+GGG | + | chr7.4:30906322-30906341 | MS.gene92778:CDS | 25.0% |
| !! | AATGAAATTTTCAACCTTTG+AGG | - | chr7.4:30906189-30906208 | None:intergenic | 25.0% |
| !! | GCTAATAATGATAATGATGA+TGG | + | chr7.4:30906297-30906316 | MS.gene92778:CDS | 25.0% |
| !! | TTTAGTTTATTGGATAGGTT+AGG | + | chr7.4:30906642-30906661 | MS.gene92778:CDS | 25.0% |
| ATTAGTTGAGAAGGTTGAAA+GGG | + | chr7.4:30907043-30907062 | MS.gene92778:CDS | 30.0% | |
| GATTAAGATGAGGAAGAAAA+TGG | + | chr7.4:30906746-30906765 | MS.gene92778:CDS | 30.0% | |
| TGGTGAGATATATAGAAGTA+CGG | - | chr7.4:30906149-30906168 | None:intergenic | 30.0% | |
| TTGAAAATTTCATTTGTCGG+AGG | + | chr7.4:30906195-30906214 | MS.gene92778:CDS | 30.0% | |
| TTTACTCAATTCTCTCACTT+GGG | + | chr7.4:30906806-30906825 | MS.gene92778:CDS | 30.0% | |
| ! | TTAGGTACTTTGGTGTATAA+AGG | + | chr7.4:30906660-30906679 | MS.gene92778:CDS | 30.0% |
| !! | TTGTTTGGTGTCTCAAAATT+TGG | - | chr7.4:30906774-30906793 | None:intergenic | 30.0% |
| !!! | GTGCTTTTAGTTTATTGGAT+AGG | + | chr7.4:30906637-30906656 | MS.gene92778:CDS | 30.0% |
| AAAACCTTGAAAGGAAACTG+TGG | - | chr7.4:30906396-30906415 | None:intergenic | 35.0% | |
| AGAGAATTGAGTAAAGTAGG+TGG | - | chr7.4:30906801-30906820 | None:intergenic | 35.0% | |
| ATTGGATAGGTTAGGTACTT+TGG | + | chr7.4:30906650-30906669 | MS.gene92778:CDS | 35.0% | |
| CTTAGGTACCAAACACTAAA+TGG | + | chr7.4:30906855-30906874 | MS.gene92778:CDS | 35.0% | |
| CTTTACTCAATTCTCTCACT+TGG | + | chr7.4:30906805-30906824 | MS.gene92778:CDS | 35.0% | |
| GAAGTACGGTTATTTAACTG+TGG | - | chr7.4:30906135-30906154 | None:intergenic | 35.0% | |
| GTGAGAGAATTGAGTAAAGT+AGG | - | chr7.4:30906804-30906823 | None:intergenic | 35.0% | |
| TATCTATTGGCACCAACATT+AGG | + | chr7.4:30906549-30906568 | MS.gene92778:CDS | 35.0% | |
| TCTTCCATCAAAACCTTGAA+AGG | - | chr7.4:30906405-30906424 | None:intergenic | 35.0% | |
| ! | AGGAATGTCTTTTGTGGTTT+TGG | + | chr7.4:30906965-30906984 | MS.gene92778:CDS | 35.0% |
| ! | ATGATGGAAATGAAAGTGCA+CGG | - | chr7.4:30906095-30906114 | None:intergenic | 35.0% |
| ! | GATTAGTTGAGAAGGTTGAA+AGG | + | chr7.4:30907042-30907061 | MS.gene92778:CDS | 35.0% |
| !! | CAAATGGGTTGATTAAGATG+AGG | + | chr7.4:30906736-30906755 | MS.gene92778:CDS | 35.0% |
| !! | GTGTTTTCAACTCTTGTTGT+TGG | + | chr7.4:30906501-30906520 | MS.gene92778:CDS | 35.0% |
| !! | GTTTCCTTTCAAGGTTTTGA+TGG | + | chr7.4:30906398-30906417 | MS.gene92778:CDS | 35.0% |
| !! | TCCAATAAACTAAAAGCACC+AGG | - | chr7.4:30906636-30906655 | None:intergenic | 35.0% |
| !! | TTTCAACCTTTGAGGCAAAT+GGG | - | chr7.4:30906181-30906200 | None:intergenic | 35.0% |
| !!! | AGATTCGTCTTTTGGGATTT+TGG | + | chr7.4:30906329-30906348 | MS.gene92778:CDS | 35.0% |
| !!! | ATTTTGGGTCTGTTTCTGAA+TGG | + | chr7.4:30906345-30906364 | MS.gene92778:CDS | 35.0% |
| !!! | GATTCGTCTTTTGGGATTTT+GGG | + | chr7.4:30906330-30906349 | MS.gene92778:CDS | 35.0% |
| !!! | TTTTCAACCTTTGAGGCAAA+TGG | - | chr7.4:30906182-30906201 | None:intergenic | 35.0% |
| AAACCCAACAGCAGCAAAAA+TGG | - | chr7.4:30906688-30906707 | None:intergenic | 40.0% | |
| AATCCATCCTCCAATTGTGA+TGG | - | chr7.4:30907026-30907045 | None:intergenic | 40.0% | |
| ACTCAGCACCATTTAGTGTT+TGG | - | chr7.4:30906866-30906885 | None:intergenic | 40.0% | |
| AGGGTTGTGAACAATGTTCT+TGG | + | chr7.4:30906942-30906961 | MS.gene92778:CDS | 40.0% | |
| ATTTCATTTGTCGGAGGTGA+TGG | + | chr7.4:30906201-30906220 | MS.gene92778:CDS | 40.0% | |
| CTGGTACAGCACTTTCAAAT+GGG | + | chr7.4:30906721-30906740 | MS.gene92778:CDS | 40.0% | |
| GTACGGTTATTTAACTGTGG+AGG | - | chr7.4:30906132-30906151 | None:intergenic | 40.0% | |
| GTTGTGAACAATGTTCTTGG+AGG | + | chr7.4:30906945-30906964 | MS.gene92778:CDS | 40.0% | |
| TCCTTTAGCATTCAAGTCCT+CGG | + | chr7.4:30906908-30906927 | MS.gene92778:CDS | 40.0% | |
| TCTGAATGGATGGAGATCAA+GGG | + | chr7.4:30906359-30906378 | MS.gene92778:CDS | 40.0% | |
| TCTTAGGTGATATGGCTTCA+AGG | + | chr7.4:30906448-30906467 | MS.gene92778:CDS | 40.0% | |
| TGAGAAGGTTGAAAGGGAAA+GGG | + | chr7.4:30907049-30907068 | MS.gene92778:CDS | 40.0% | |
| TGATCCACAGTTTCCTTTCA+AGG | + | chr7.4:30906389-30906408 | MS.gene92778:CDS | 40.0% | |
| TGCTTGTGTCTTAGGTGATA+TGG | + | chr7.4:30906440-30906459 | MS.gene92778:CDS | 40.0% | |
| TGGGTTTCAGCAGTAATCTT+AGG | + | chr7.4:30906838-30906857 | MS.gene92778:CDS | 40.0% | |
| TTCTGAATGGATGGAGATCA+AGG | + | chr7.4:30906358-30906377 | MS.gene92778:CDS | 40.0% | |
| TTGAGAAGGTTGAAAGGGAA+AGG | + | chr7.4:30907048-30907067 | MS.gene92778:CDS | 40.0% | |
| ! | AAATGGTGCTGAGTTTGTGT+TGG | + | chr7.4:30906872-30906891 | MS.gene92778:CDS | 40.0% |
| ! | ATGGCTTCAAGGCCTAATTT+TGG | + | chr7.4:30906459-30906478 | MS.gene92778:CDS | 40.0% |
| ! | ATTTTTGCTGCTGTTGGGTT+TGG | + | chr7.4:30906687-30906706 | MS.gene92778:CDS | 40.0% |
| ! | TCTTGGAGGAATGTCTTTTG+TGG | + | chr7.4:30906959-30906978 | MS.gene92778:CDS | 40.0% |
| !! | AAAGTAGGTGGAGCTTTGTT+TGG | - | chr7.4:30906789-30906808 | None:intergenic | 40.0% |
| !! | CAAGGTTTTGATGGAAGAGT+TGG | + | chr7.4:30906407-30906426 | MS.gene92778:CDS | 40.0% |
| !! | GTACCATTTTTGCTGCTGTT+GGG | + | chr7.4:30906682-30906701 | MS.gene92778:CDS | 40.0% |
| !! | GTTTTGATGGAAGAGTTGGT+TGG | + | chr7.4:30906411-30906430 | MS.gene92778:CDS | 40.0% |
| !! | TGGTGGTGGAAGTGAAAATT+GGG | + | chr7.4:30906269-30906288 | MS.gene92778:CDS | 40.0% |
| !! | TTCAACCTTTGAGGCAAATG+GGG | - | chr7.4:30906180-30906199 | None:intergenic | 40.0% |
| !!! | GCCTGGTGCTTTTAGTTTAT+TGG | + | chr7.4:30906632-30906651 | MS.gene92778:CDS | 40.0% |
| !!! | TGTCTTTTGTGGTTTTGGCA+AGG | + | chr7.4:30906970-30906989 | MS.gene92778:CDS | 40.0% |
| AAGAGTCACATGTTTGAGCC+TGG | + | chr7.4:30906615-30906634 | MS.gene92778:CDS | 45.0% | |
| AAGCCATCACAATTGGAGGA+TGG | + | chr7.4:30907020-30907039 | MS.gene92778:CDS | 45.0% | |
| ACCGAGGACTTGAATGCTAA+AGG | - | chr7.4:30906912-30906931 | None:intergenic | 45.0% | |
| CGGTTATTTAACTGTGGAGG+TGG | - | chr7.4:30906129-30906148 | None:intergenic | 45.0% | |
| GCAGAAGAAGCTCCTAATGT+TGG | - | chr7.4:30906564-30906583 | None:intergenic | 45.0% | |
| GCTGGTACAGCACTTTCAAA+TGG | + | chr7.4:30906720-30906739 | MS.gene92778:CDS | 45.0% | |
| GGACAAGATGCAAAGATTGC+AGG | - | chr7.4:30906594-30906613 | None:intergenic | 45.0% | |
| GGCTCAAACATGTGACTCTT+AGG | - | chr7.4:30906615-30906634 | None:intergenic | 45.0% | |
| TGAGAAGCCATCACAATTGG+AGG | + | chr7.4:30907016-30907035 | MS.gene92778:CDS | 45.0% | |
| TGGTGAGAAGCCATCACAAT+TGG | + | chr7.4:30907013-30907032 | MS.gene92778:CDS | 45.0% | |
| TTTAACTGTGGAGGTGGTGA+TGG | - | chr7.4:30906123-30906142 | None:intergenic | 45.0% | |
| ! | CTGCGTTTTACACCTTCATC+TGG | + | chr7.4:30906063-30906082 | MS.gene92778:CDS | 45.0% |
| ! | TTTGAGGCAAATGGGGTGAT+GGG | - | chr7.4:30906173-30906192 | None:intergenic | 45.0% |
| !! | GGAGGATGGATTAGTTGAGA+AGG | + | chr7.4:30907034-30907053 | MS.gene92778:CDS | 45.0% |
| !! | GGTACCATTTTTGCTGCTGT+TGG | + | chr7.4:30906681-30906700 | MS.gene92778:CDS | 45.0% |
| !! | GGTGGTGATGGTAATGATGA+TGG | - | chr7.4:30906111-30906130 | None:intergenic | 45.0% |
| !! | GGTGGTGGAAGTGAAAATTG+GGG | + | chr7.4:30906270-30906289 | MS.gene92778:CDS | 45.0% |
| !! | GGTGTTACTGCTTGTGTCTT+AGG | + | chr7.4:30906432-30906451 | MS.gene92778:CDS | 45.0% |
| !! | GTGGTGGTGGAAGTGAAAAT+TGG | + | chr7.4:30906268-30906287 | MS.gene92778:CDS | 45.0% |
| !! | TGGGTCTGTTTCTGAATGGA+TGG | + | chr7.4:30906349-30906368 | MS.gene92778:CDS | 45.0% |
| !!! | TGGTTTTGGCAAGGTTGACA+GGG | + | chr7.4:30906979-30906998 | MS.gene92778:CDS | 45.0% |
| CATCACCCCATTTGCCTCAA+AGG | + | chr7.4:30906172-30906191 | MS.gene92778:CDS | 50.0% | |
| CTCACTTGGGCTGCTCATAT+GGG | + | chr7.4:30906819-30906838 | MS.gene92778:CDS | 50.0% | |
| GAAGGTTGAAAGGGAAAGGG+AGG | + | chr7.4:30907052-30907071 | MS.gene92778:CDS | 50.0% | |
| GGTGGAAGTGAAAATTGGGG+TGG | + | chr7.4:30906273-30906292 | MS.gene92778:CDS | 50.0% | |
| TCTCACTTGGGCTGCTCATA+TGG | + | chr7.4:30906818-30906837 | MS.gene92778:CDS | 50.0% | |
| TTGACAGGGTCACAGAGTTC+TGG | + | chr7.4:30906993-30907012 | MS.gene92778:CDS | 50.0% | |
| ! | AGCATTCAAGTCCTCGGTGT+TGG | + | chr7.4:30906914-30906933 | MS.gene92778:CDS | 50.0% |
| ! | TTTGTCGGAGGTGATGGTGT+TGG | + | chr7.4:30906207-30906226 | MS.gene92778:CDS | 50.0% |
| !! | CTTTGAGGCAAATGGGGTGA+TGG | - | chr7.4:30906174-30906193 | None:intergenic | 50.0% |
| !!! | GTGGTTTTGGCAAGGTTGAC+AGG | + | chr7.4:30906978-30906997 | MS.gene92778:CDS | 50.0% |
| AACCCTAAGCACCAACACCG+AGG | - | chr7.4:30906928-30906947 | None:intergenic | 55.0% | |
| AAGGGAAAGGGAGGAGGCTT+TGG | + | chr7.4:30907061-30907080 | MS.gene92778:CDS | 55.0% | |
| GGTTGAAAGGGAAAGGGAGG+AGG | + | chr7.4:30907055-30907074 | MS.gene92778:CDS | 55.0% | |
| ! | GCACGGCTTTGACCAGATGA+AGG | - | chr7.4:30906078-30906097 | None:intergenic | 55.0% |
| ! | GGAGGTGATGGTGTTGGAAG+TGG | + | chr7.4:30906213-30906232 | MS.gene92778:CDS | 55.0% |
| ! | GGTGATGGTGTTGGAAGTGG+TGG | + | chr7.4:30906216-30906235 | MS.gene92778:CDS | 55.0% |
| ! | GGTGTTGGAAGTGGTGGTAG+TGG | + | chr7.4:30906222-30906241 | MS.gene92778:CDS | 55.0% |
| !! | AGGCAAATGGGGTGATGGGT+TGG | - | chr7.4:30906169-30906188 | None:intergenic | 55.0% |
| !! | AGTCCTCGGTGTTGGTGCTT+AGG | + | chr7.4:30906922-30906941 | MS.gene92778:CDS | 55.0% |
| !! | AGTGGTAGTGGTAGGAGTGG+TGG | + | chr7.4:30906240-30906259 | MS.gene92778:CDS | 55.0% |
| !! | GGAAGTGGTGGTAGTGGTAG+TGG | + | chr7.4:30906228-30906247 | MS.gene92778:CDS | 55.0% |
| !! | GGTAGTGGTAGTGGTAGGAG+TGG | + | chr7.4:30906237-30906256 | MS.gene92778:CDS | 55.0% |
| !! | GTCCTCGGTGTTGGTGCTTA+GGG | + | chr7.4:30906923-30906942 | MS.gene92778:CDS | 55.0% |
| !! | GTGGTGGTAGTGGTAGTGGT+AGG | + | chr7.4:30906232-30906251 | MS.gene92778:CDS | 55.0% |
| ! | AGTGGTAGGAGTGGTGGAGG+TGG | + | chr7.4:30906246-30906265 | MS.gene92778:CDS | 60.0% |
| ! | GGTAGTGGTAGGAGTGGTGG+AGG | + | chr7.4:30906243-30906262 | MS.gene92778:CDS | 60.0% |
| !! | GCTGCTGTTGGGTTTGGTGC+TGG | + | chr7.4:30906693-30906712 | MS.gene92778:CDS | 60.0% |
| !! | GGGTTTGGTGCTGGTCTTGC+TGG | + | chr7.4:30906702-30906721 | MS.gene92778:CDS | 60.0% |
| ! | AGGAGTGGTGGAGGTGGTGG+TGG | + | chr7.4:30906252-30906271 | MS.gene92778:CDS | 65.0% |
| ! | GGTAGGAGTGGTGGAGGTGG+TGG | + | chr7.4:30906249-30906268 | MS.gene92778:CDS | 65.0% |
| !! | AGTGGTGGAGGTGGTGGTGG+TGG | + | chr7.4:30906255-30906274 | MS.gene92778:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 30906045 | 30907115 | 30906045 | ID=MS.gene92778 |
| chr7.4 | mRNA | 30906045 | 30907115 | 30906045 | ID=MS.gene92778.t1;Parent=MS.gene92778 |
| chr7.4 | exon | 30906045 | 30907115 | 30906045 | ID=MS.gene92778.t1.exon1;Parent=MS.gene92778.t1 |
| chr7.4 | CDS | 30906045 | 30907115 | 30906045 | ID=cds.MS.gene92778.t1;Parent=MS.gene92778.t1 |
| Gene Sequence |
| Protein sequence |
