Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92809.t1 | RHN46759.1 | 92.7 | 329 | 24 | 0 | 1 | 329 | 38 | 366 | 9.40E-177 | 629.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92809.t1 | Q40316 | 68.4 | 329 | 101 | 2 | 1 | 329 | 1 | 326 | 4.6e-132 | 472.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92809.t1 | A0A396H071 | 92.7 | 329 | 24 | 0 | 1 | 329 | 38 | 366 | 6.7e-177 | 629.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene92809 | MS.gene56554 | PPI |
| MS.gene92809 | MS.gene006771 | PPI |
| MS.gene028567 | MS.gene92809 | PPI |
| MS.gene92809 | MS.gene40154 | PPI |
| MS.gene071401 | MS.gene92809 | PPI |
| MS.gene92809 | MS.gene96808 | PPI |
| MS.gene92809 | MS.gene40148 | PPI |
| MS.gene92809 | MS.gene071398 | PPI |
| MS.gene92809 | MS.gene031525 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92809.t1 | MTR_7g074730 | 92.705 | 329 | 23 | 1 | 1 | 329 | 1 | 328 | 0.0 | 634 |
| MS.gene92809.t1 | MTR_7g074820 | 87.273 | 330 | 40 | 2 | 1 | 329 | 1 | 329 | 0.0 | 592 |
| MS.gene92809.t1 | MTR_7g074850 | 86.667 | 330 | 42 | 2 | 1 | 329 | 1 | 329 | 0.0 | 588 |
| MS.gene92809.t1 | MTR_7g074880 | 79.635 | 329 | 64 | 2 | 1 | 329 | 1 | 326 | 0.0 | 555 |
| MS.gene92809.t1 | MTR_7g074710 | 68.085 | 329 | 102 | 2 | 1 | 329 | 1 | 326 | 2.63e-171 | 479 |
| MS.gene92809.t1 | MTR_7g074870 | 75.610 | 287 | 68 | 1 | 43 | 329 | 4 | 288 | 2.13e-162 | 454 |
| MS.gene92809.t1 | MTR_4g023730 | 51.212 | 330 | 159 | 2 | 1 | 329 | 1 | 329 | 1.63e-113 | 332 |
| MS.gene92809.t1 | MTR_1g022440 | 46.584 | 322 | 168 | 4 | 8 | 329 | 8 | 325 | 6.84e-100 | 298 |
| MS.gene92809.t1 | MTR_1g022445 | 46.483 | 327 | 161 | 5 | 8 | 329 | 8 | 325 | 3.21e-96 | 288 |
| MS.gene92809.t1 | MTR_4g092080 | 40.299 | 335 | 187 | 5 | 1 | 327 | 7 | 336 | 6.71e-80 | 247 |
| MS.gene92809.t1 | MTR_4g081440 | 37.243 | 341 | 189 | 7 | 6 | 329 | 22 | 354 | 3.61e-73 | 230 |
| MS.gene92809.t1 | MTR_4g081440 | 37.243 | 341 | 188 | 8 | 6 | 329 | 18 | 349 | 1.25e-71 | 226 |
| MS.gene92809.t1 | MTR_2g101330 | 38.415 | 328 | 185 | 9 | 7 | 329 | 4 | 319 | 2.65e-67 | 214 |
| MS.gene92809.t1 | MTR_5g056600 | 36.000 | 325 | 194 | 9 | 9 | 329 | 5 | 319 | 1.02e-60 | 197 |
| MS.gene92809.t1 | MTR_8g062110 | 36.747 | 332 | 191 | 9 | 1 | 326 | 1 | 319 | 1.96e-60 | 196 |
| MS.gene92809.t1 | MTR_8g062110 | 36.446 | 332 | 192 | 8 | 1 | 326 | 10 | 328 | 2.31e-60 | 196 |
| MS.gene92809.t1 | MTR_8g062440 | 36.747 | 332 | 192 | 9 | 4 | 329 | 3 | 322 | 4.65e-59 | 192 |
| MS.gene92809.t1 | MTR_8g062110 | 38.163 | 283 | 162 | 5 | 1 | 279 | 1 | 274 | 3.05e-58 | 189 |
| MS.gene92809.t1 | MTR_8g062110 | 37.801 | 291 | 167 | 6 | 1 | 287 | 1 | 281 | 3.52e-58 | 189 |
| MS.gene92809.t1 | MTR_8g062440 | 36.826 | 334 | 188 | 10 | 4 | 329 | 3 | 321 | 2.47e-57 | 188 |
| MS.gene92809.t1 | MTR_2g013230 | 34.844 | 353 | 193 | 9 | 1 | 329 | 1 | 340 | 6.55e-57 | 188 |
| MS.gene92809.t1 | MTR_3g005210 | 34.663 | 326 | 198 | 7 | 8 | 329 | 6 | 320 | 6.94e-57 | 187 |
| MS.gene92809.t1 | MTR_8g062440 | 39.362 | 282 | 154 | 7 | 4 | 279 | 3 | 273 | 6.36e-55 | 182 |
| MS.gene92809.t1 | MTR_4g077130 | 35.207 | 338 | 193 | 12 | 1 | 328 | 1 | 322 | 3.87e-53 | 177 |
| MS.gene92809.t1 | MTR_2g013250 | 33.908 | 348 | 195 | 8 | 3 | 327 | 2 | 337 | 1.41e-52 | 176 |
| MS.gene92809.t1 | MTR_3g005170 | 33.129 | 326 | 201 | 9 | 8 | 328 | 10 | 323 | 3.06e-52 | 175 |
| MS.gene92809.t1 | MTR_3g031650 | 34.036 | 332 | 192 | 11 | 8 | 329 | 5 | 319 | 1.46e-51 | 173 |
| MS.gene92809.t1 | MTR_3g005170 | 35.145 | 276 | 168 | 6 | 8 | 280 | 10 | 277 | 2.20e-51 | 171 |
| MS.gene92809.t1 | MTR_5g072620 | 35.347 | 331 | 189 | 10 | 8 | 329 | 5 | 319 | 4.91e-50 | 169 |
| MS.gene92809.t1 | MTR_2g013260 | 35.328 | 351 | 190 | 11 | 1 | 327 | 1 | 338 | 2.67e-49 | 168 |
| MS.gene92809.t1 | MTR_2g104960 | 35.583 | 326 | 190 | 13 | 8 | 329 | 20 | 329 | 1.12e-48 | 166 |
| MS.gene92809.t1 | MTR_4g077100 | 34.386 | 285 | 173 | 7 | 1 | 280 | 3 | 278 | 3.46e-48 | 163 |
| MS.gene92809.t1 | MTR_4g077100 | 34.737 | 285 | 172 | 8 | 1 | 280 | 3 | 278 | 1.22e-47 | 163 |
| MS.gene92809.t1 | MTR_4g006940 | 33.030 | 330 | 201 | 12 | 4 | 329 | 13 | 326 | 1.27e-45 | 158 |
| MS.gene92809.t1 | MTR_4g009040 | 33.129 | 326 | 201 | 8 | 7 | 329 | 12 | 323 | 1.40e-45 | 158 |
| MS.gene92809.t1 | MTR_7g117190 | 32.665 | 349 | 203 | 10 | 3 | 329 | 2 | 340 | 1.80e-45 | 158 |
| MS.gene92809.t1 | MTR_3g031650 | 33.935 | 277 | 168 | 7 | 8 | 279 | 5 | 271 | 2.13e-45 | 155 |
| MS.gene92809.t1 | MTR_4g009040 | 32.628 | 331 | 200 | 9 | 7 | 329 | 12 | 327 | 1.41e-44 | 155 |
| MS.gene92809.t1 | MTR_2g013260 | 35.430 | 302 | 163 | 8 | 1 | 279 | 1 | 293 | 1.29e-43 | 152 |
| MS.gene92809.t1 | MTR_4g006940 | 34.643 | 280 | 168 | 8 | 4 | 281 | 13 | 279 | 4.88e-43 | 150 |
| MS.gene92809.t1 | MTR_4g006940 | 34.643 | 280 | 168 | 8 | 4 | 281 | 13 | 279 | 4.88e-43 | 150 |
| MS.gene92809.t1 | MTR_2g028620 | 32.456 | 342 | 186 | 14 | 8 | 329 | 10 | 326 | 1.29e-42 | 150 |
| MS.gene92809.t1 | MTR_4g009690 | 31.902 | 326 | 205 | 8 | 7 | 329 | 12 | 323 | 3.33e-40 | 144 |
| MS.gene92809.t1 | MTR_7g117190 | 33.557 | 298 | 171 | 8 | 3 | 279 | 2 | 293 | 4.33e-40 | 143 |
| MS.gene92809.t1 | MTR_4g009690 | 31.902 | 326 | 204 | 8 | 7 | 329 | 12 | 322 | 4.37e-40 | 143 |
| MS.gene92809.t1 | MTR_2g028620 | 34.286 | 280 | 165 | 9 | 8 | 279 | 10 | 278 | 2.32e-39 | 141 |
| MS.gene92809.t1 | MTR_3g005170 | 29.755 | 326 | 181 | 10 | 8 | 328 | 10 | 292 | 6.87e-37 | 134 |
| MS.gene92809.t1 | MTR_2g013230 | 32.016 | 253 | 137 | 8 | 101 | 329 | 9 | 250 | 3.72e-27 | 107 |
| MS.gene92809.t1 | MTR_8g062110 | 33.186 | 226 | 135 | 7 | 106 | 326 | 19 | 233 | 4.09e-27 | 107 |
| MS.gene92809.t1 | MTR_0164s0070 | 37.984 | 129 | 77 | 2 | 7 | 134 | 4 | 130 | 1.55e-25 | 102 |
| MS.gene92809.t1 | MTR_8g062110 | 34.463 | 177 | 106 | 3 | 106 | 279 | 19 | 188 | 9.76e-25 | 99.4 |
| MS.gene92809.t1 | MTR_5g029990 | 26.978 | 278 | 169 | 8 | 8 | 276 | 12 | 264 | 2.52e-24 | 100 |
| MS.gene92809.t1 | MTR_6g406250 | 28.195 | 266 | 162 | 11 | 4 | 256 | 51 | 300 | 6.26e-22 | 95.1 |
| MS.gene92809.t1 | MTR_7g074865 | 87.500 | 40 | 5 | 0 | 1 | 40 | 1 | 40 | 6.70e-20 | 82.8 |
| MS.gene92809.t1 | MTR_7g117190 | 30.932 | 236 | 133 | 9 | 116 | 329 | 3 | 230 | 1.13e-19 | 86.7 |
| MS.gene92809.t1 | MTR_2g013260 | 32.669 | 251 | 134 | 10 | 101 | 327 | 28 | 267 | 1.38e-19 | 87.4 |
| MS.gene92809.t1 | MTR_6g406250 | 28.634 | 227 | 133 | 8 | 4 | 217 | 51 | 261 | 1.52e-19 | 87.0 |
| MS.gene92809.t1 | MTR_3g101500 | 25.524 | 286 | 173 | 10 | 7 | 280 | 3 | 260 | 8.23e-13 | 68.6 |
| MS.gene92809.t1 | MTR_3g101500 | 25.490 | 255 | 156 | 8 | 7 | 254 | 3 | 230 | 1.24e-12 | 67.8 |
| MS.gene92809.t1 | MTR_3g101500 | 27.604 | 192 | 118 | 6 | 7 | 198 | 3 | 173 | 2.16e-12 | 65.9 |
| MS.gene92809.t1 | MTR_0685s0030 | 33.621 | 116 | 74 | 2 | 165 | 280 | 3 | 115 | 7.24e-12 | 62.0 |
| MS.gene92809.t1 | MTR_0685s0030 | 33.621 | 116 | 74 | 2 | 165 | 280 | 3 | 115 | 1.25e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92809.t1 | AT2G45400 | 53.495 | 329 | 146 | 4 | 6 | 329 | 38 | 364 | 5.32e-116 | 340 |
| MS.gene92809.t1 | AT2G45400 | 54.093 | 281 | 123 | 3 | 6 | 281 | 38 | 317 | 2.93e-101 | 301 |
| MS.gene92809.t1 | AT5G42800 | 47.041 | 338 | 157 | 6 | 1 | 329 | 1 | 325 | 3.56e-97 | 292 |
| MS.gene92809.t1 | AT2G45400 | 52.381 | 294 | 133 | 4 | 41 | 329 | 16 | 307 | 3.82e-96 | 287 |
| MS.gene92809.t1 | AT4G35420 | 40.361 | 332 | 184 | 9 | 1 | 329 | 1 | 321 | 1.51e-80 | 248 |
| MS.gene92809.t1 | AT2G45400 | 56.221 | 217 | 90 | 2 | 6 | 217 | 38 | 254 | 2.92e-80 | 245 |
| MS.gene92809.t1 | AT1G61720 | 40.419 | 334 | 186 | 7 | 4 | 329 | 9 | 337 | 1.99e-76 | 238 |
| MS.gene92809.t1 | AT1G68540 | 37.538 | 325 | 189 | 9 | 10 | 329 | 6 | 321 | 1.84e-59 | 194 |
| MS.gene92809.t1 | AT1G09480 | 35.843 | 332 | 200 | 7 | 1 | 329 | 1 | 322 | 1.03e-57 | 189 |
| MS.gene92809.t1 | AT1G09480 | 36.170 | 329 | 195 | 7 | 1 | 323 | 48 | 367 | 3.22e-57 | 189 |
| MS.gene92809.t1 | AT4G27250 | 31.515 | 330 | 204 | 4 | 9 | 321 | 14 | 338 | 4.15e-57 | 189 |
| MS.gene92809.t1 | AT4G27250 | 31.790 | 324 | 201 | 4 | 9 | 321 | 14 | 328 | 1.07e-56 | 187 |
| MS.gene92809.t1 | AT2G02400 | 36.012 | 336 | 186 | 12 | 4 | 329 | 2 | 318 | 1.52e-56 | 186 |
| MS.gene92809.t1 | AT1G25460 | 35.802 | 324 | 194 | 7 | 10 | 329 | 6 | 319 | 2.40e-55 | 183 |
| MS.gene92809.t1 | AT1G09510 | 37.082 | 329 | 194 | 9 | 1 | 326 | 1 | 319 | 2.83e-55 | 183 |
| MS.gene92809.t1 | AT1G09490 | 36.934 | 287 | 170 | 6 | 1 | 284 | 1 | 279 | 5.98e-55 | 182 |
| MS.gene92809.t1 | AT5G58490 | 35.821 | 335 | 182 | 10 | 8 | 329 | 9 | 323 | 8.70e-55 | 182 |
| MS.gene92809.t1 | AT1G51410 | 33.333 | 330 | 207 | 8 | 3 | 329 | 4 | 323 | 2.63e-54 | 181 |
| MS.gene92809.t1 | AT5G19440 | 35.629 | 334 | 191 | 11 | 4 | 328 | 5 | 323 | 8.30e-54 | 179 |
| MS.gene92809.t1 | AT1G76470 | 36.792 | 318 | 191 | 7 | 5 | 320 | 4 | 313 | 1.39e-52 | 176 |
| MS.gene92809.t1 | AT1G66800 | 37.729 | 273 | 160 | 7 | 4 | 275 | 3 | 266 | 8.08e-52 | 174 |
| MS.gene92809.t1 | AT1G15950 | 36.280 | 328 | 185 | 14 | 8 | 329 | 13 | 322 | 1.13e-49 | 169 |
| MS.gene92809.t1 | AT1G15950 | 36.280 | 328 | 185 | 14 | 8 | 329 | 13 | 322 | 1.13e-49 | 169 |
| MS.gene92809.t1 | AT1G09500 | 35.336 | 283 | 171 | 6 | 1 | 279 | 1 | 275 | 1.15e-49 | 167 |
| MS.gene92809.t1 | AT1G09500 | 35.417 | 288 | 174 | 7 | 1 | 284 | 1 | 280 | 1.79e-49 | 168 |
| MS.gene92809.t1 | AT1G15950 | 35.987 | 314 | 182 | 10 | 8 | 317 | 13 | 311 | 1.08e-47 | 164 |
| MS.gene92809.t1 | AT2G33590 | 33.642 | 324 | 191 | 11 | 5 | 321 | 6 | 312 | 1.04e-46 | 160 |
| MS.gene92809.t1 | AT1G15950 | 38.489 | 278 | 152 | 10 | 8 | 281 | 13 | 275 | 2.93e-46 | 158 |
| MS.gene92809.t1 | AT1G15950 | 38.351 | 279 | 153 | 10 | 8 | 282 | 13 | 276 | 4.46e-46 | 158 |
| MS.gene92809.t1 | AT1G15950 | 38.351 | 279 | 153 | 10 | 8 | 282 | 13 | 276 | 5.95e-46 | 158 |
| MS.gene92809.t1 | AT1G80820 | 35.061 | 328 | 189 | 14 | 8 | 329 | 8 | 317 | 3.33e-45 | 157 |
| MS.gene92809.t1 | AT2G33600 | 35.938 | 320 | 189 | 11 | 5 | 321 | 6 | 312 | 1.94e-43 | 152 |
| MS.gene92809.t1 | AT1G80820 | 36.331 | 278 | 158 | 10 | 8 | 281 | 8 | 270 | 3.07e-41 | 145 |
| MS.gene92809.t1 | AT1G09490 | 33.992 | 253 | 157 | 5 | 35 | 284 | 3 | 248 | 3.27e-40 | 143 |
| MS.gene92809.t1 | AT1G09500 | 32.800 | 250 | 157 | 6 | 39 | 284 | 4 | 246 | 1.02e-34 | 128 |
| MS.gene92809.t1 | AT1G68540 | 34.842 | 221 | 133 | 6 | 113 | 329 | 1 | 214 | 1.88e-31 | 117 |
| MS.gene92809.t1 | AT2G23910 | 26.557 | 305 | 204 | 9 | 9 | 306 | 11 | 302 | 2.96e-29 | 114 |
| MS.gene92809.t1 | AT2G23910 | 25.993 | 277 | 189 | 7 | 9 | 282 | 11 | 274 | 6.22e-27 | 107 |
| MS.gene92809.t1 | AT2G23910 | 25.818 | 275 | 188 | 7 | 9 | 280 | 11 | 272 | 9.60e-27 | 107 |
| MS.gene92809.t1 | AT4G30470 | 25.246 | 305 | 205 | 9 | 9 | 305 | 11 | 300 | 3.44e-24 | 100 |
| MS.gene92809.t1 | AT5G14700 | 28.421 | 285 | 162 | 11 | 2 | 264 | 49 | 313 | 1.64e-22 | 97.1 |
| MS.gene92809.t1 | AT1G15950 | 32.609 | 230 | 138 | 10 | 106 | 329 | 6 | 224 | 4.74e-22 | 93.6 |
| MS.gene92809.t1 | AT5G14700 | 28.704 | 216 | 120 | 8 | 2 | 198 | 49 | 249 | 1.49e-19 | 87.4 |
| MS.gene92809.t1 | AT2G23910 | 25.000 | 264 | 180 | 8 | 50 | 306 | 16 | 268 | 6.98e-19 | 85.5 |
| MS.gene92809.t1 | AT4G33360 | 26.761 | 284 | 172 | 10 | 7 | 280 | 2 | 259 | 1.98e-17 | 82.0 |
| MS.gene92809.t1 | AT4G33360 | 26.761 | 284 | 172 | 10 | 7 | 280 | 14 | 271 | 3.04e-17 | 81.3 |
| MS.gene92809.t1 | AT4G33360 | 26.761 | 284 | 172 | 10 | 7 | 280 | 14 | 271 | 3.25e-17 | 81.6 |
Find 63 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCTGCATTGAAACTTTC+TGG | 0.117961 | 7.4:+30443356 | None:intergenic |
| AATTCACTAGCTTTCTTATT+TGG | 0.119579 | 7.4:-30442936 | MS.gene92809:intron |
| GAGAAAGCTGTTCTTGAATT+TGG | 0.151014 | 7.4:-30443047 | MS.gene92809:CDS |
| TTCATATTCTAGAGAGCTTA+TGG | 0.191999 | 7.4:-30441415 | MS.gene92809:intron |
| GAGCAATTGTACCTCCCTTT+TGG | 0.241092 | 7.4:+30441616 | None:intergenic |
| TTCATTTGCCCTAAGCTTCC+TGG | 0.249284 | 7.4:-30442969 | MS.gene92809:CDS |
| GGTAGCTAACATCTTTCTTT+TGG | 0.266690 | 7.4:+30443438 | None:intergenic |
| AGAGAGCTTATGGGAGTTAA+AGG | 0.273617 | 7.4:-30441405 | MS.gene92809:CDS |
| ACTGGAGGTACAGGGTTTAT+TGG | 0.300052 | 7.4:-30445229 | MS.gene92809:CDS |
| AGAACCATTGATGGAGCATT+AGG | 0.319772 | 7.4:-30443254 | MS.gene92809:CDS |
| AGGTAATGGATGAAAGTTAT+TGG | 0.353449 | 7.4:-30443139 | MS.gene92809:CDS |
| GAAGTTAAATGTGGAAGCTT+AGG | 0.375861 | 7.4:+30441381 | None:intergenic |
| ATTTGGAGAACAACATGGTT+TGG | 0.377334 | 7.4:-30443030 | MS.gene92809:CDS |
| AATTGAATGTTGCAAGGAAA+AGG | 0.383505 | 7.4:-30441295 | MS.gene92809:CDS |
| GTACAGGGTTTATTGGTTCA+TGG | 0.397157 | 7.4:-30445222 | MS.gene92809:CDS |
| TCATATTCTAGAGAGCTTAT+GGG | 0.397986 | 7.4:-30441414 | MS.gene92809:intron |
| TTGCTGCATTGAAACTTTCT+GGG | 0.400104 | 7.4:+30443357 | None:intergenic |
| TAAACTGAGCCAGGAAGCTT+AGG | 0.400902 | 7.4:+30442960 | None:intergenic |
| TCGTTCTCTTCAAAATCAAT+TGG | 0.419138 | 7.4:+30443299 | None:intergenic |
| AAAGGAAGAGTTTGTGTGAC+TGG | 0.438296 | 7.4:-30445247 | MS.gene92809:CDS |
| CTTGAACATCCTAATCCAAA+AGG | 0.439060 | 7.4:-30441631 | MS.gene92809:CDS |
| GTTTGTGTGACTGGAGGTAC+AGG | 0.443705 | 7.4:-30445238 | MS.gene92809:CDS |
| TCATCAATAGTTGCAATGAA+TGG | 0.444162 | 7.4:+30441592 | None:intergenic |
| CGTCATCAACATGCACCATA+TGG | 0.451162 | 7.4:+30441677 | None:intergenic |
| AATTCCTAATGCTCCATCAA+TGG | 0.462695 | 7.4:+30443250 | None:intergenic |
| AGTTTCAATGCAGCAATTGA+AGG | 0.465129 | 7.4:-30443350 | MS.gene92809:CDS |
| GGCAGCCTCTCGTCTCCATA+TGG | 0.466564 | 7.4:-30441692 | MS.gene92809:CDS |
| TAACAGCGTAACCATCTTCA+AGG | 0.473218 | 7.4:+30445185 | None:intergenic |
| AAACAAAGAAGAAGAGGTAA+TGG | 0.474396 | 7.4:-30443153 | MS.gene92809:CDS |
| TCAAAGAAACTGATGGATGC+TGG | 0.475623 | 7.4:-30441360 | MS.gene92809:CDS |
| AAGAGTGTAGTAATGGAAGA+AGG | 0.480153 | 7.4:-30445271 | None:intergenic |
| ATCAAGAGACTCCTTGAAGA+TGG | 0.485072 | 7.4:-30445196 | MS.gene92809:CDS |
| ATTGAATGTTGCAAGGAAAA+GGG | 0.495429 | 7.4:-30441294 | MS.gene92809:CDS |
| GCAGCAATTGAAGGGTGCAT+TGG | 0.498418 | 7.4:-30443341 | MS.gene92809:CDS |
| TAGCCTTGAGGAAATGTTTG+AGG | 0.499613 | 7.4:-30441322 | MS.gene92809:CDS |
| ACAGCATATGACCAAGCAAA+AGG | 0.516501 | 7.4:+30443086 | None:intergenic |
| AGAGTGTAGTAATGGAAGAA+GGG | 0.518812 | 7.4:-30445270 | None:intergenic |
| AGCCTTGAGGAAATGTTTGA+GGG | 0.526432 | 7.4:-30441321 | MS.gene92809:CDS |
| AGTGAATTATAAACTGAGCC+AGG | 0.528708 | 7.4:+30442951 | None:intergenic |
| TTTAACTTCAAAGAAACTGA+TGG | 0.529224 | 7.4:-30441367 | MS.gene92809:CDS |
| AGGAAGCTTAGGGCAAATGA+AGG | 0.532077 | 7.4:+30442971 | None:intergenic |
| AAGGGTCCAACAACAAAACT+TGG | 0.536983 | 7.4:+30442990 | None:intergenic |
| CTTGAATTTGGAGAACAACA+TGG | 0.539504 | 7.4:-30443035 | MS.gene92809:CDS |
| CGCCCTCAAACATTTCCTCA+AGG | 0.552005 | 7.4:+30441319 | None:intergenic |
| TTGAACATCCTAATCCAAAA+GGG | 0.565903 | 7.4:-30441630 | MS.gene92809:CDS |
| AAACTGAGCCAGGAAGCTTA+GGG | 0.566911 | 7.4:+30442961 | None:intergenic |
| GTTTCAATGCAGCAATTGAA+GGG | 0.573950 | 7.4:-30443349 | MS.gene92809:CDS |
| TGTAGAACTCACTTGGATGT+TGG | 0.581215 | 7.4:+30441526 | None:intergenic |
| TGATATTGACAATAGTCCAT+TGG | 0.582137 | 7.4:-30441713 | MS.gene92809:CDS |
| ACCACTGTTAGATCTAATCC+AGG | 0.585583 | 7.4:-30445160 | MS.gene92809:intron |
| GTAGTAATGGAAGAAGGGAA+AGG | 0.589604 | 7.4:-30445265 | None:intergenic |
| TGGAGACGAGAGGCTGCCAA+TGG | 0.597283 | 7.4:+30441697 | None:intergenic |
| AGTTTCTTTGAAGTTAAATG+TGG | 0.603651 | 7.4:+30441372 | None:intergenic |
| GGGCGCAATTGAATGTTGCA+AGG | 0.611585 | 7.4:-30441301 | MS.gene92809:CDS |
| TTTGTGTGACTGGAGGTACA+GGG | 0.633409 | 7.4:-30445237 | MS.gene92809:CDS |
| AACATCCTAATCCAAAAGGG+AGG | 0.662110 | 7.4:-30441627 | MS.gene92809:CDS |
| GGAAGCTTAGGGCAAATGAA+GGG | 0.663348 | 7.4:+30442972 | None:intergenic |
| AATCAATTGGAGTAGCTGTG+TGG | 0.667434 | 7.4:+30443312 | None:intergenic |
| CAAGTTCAAGTATAGCCTTG+AGG | 0.674084 | 7.4:-30441334 | MS.gene92809:CDS |
| ATGCACCATATGGAGACGAG+AGG | 0.702189 | 7.4:+30441687 | None:intergenic |
| GGAAGAGTTTGTGTGACTGG+AGG | 0.702220 | 7.4:-30445244 | MS.gene92809:CDS |
| ATGCATTTGGAAGATTTGTG+AGG | 0.707774 | 7.4:+30443417 | None:intergenic |
| ACCTGGATTAGATCTAACAG+TGG | 0.730654 | 7.4:+30445159 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAATAAACTCTTAT+AGG | + | chr7.4:30444744-30444763 | None:intergenic | 10.0% |
| !! | AAAAATAAAATAAAAAACTG+AGG | - | chr7.4:30442748-30442767 | MS.gene92809:intron | 10.0% |
| !! | AGATAAAAAAGTTAATAATA+AGG | - | chr7.4:30442797-30442816 | MS.gene92809:intron | 10.0% |
| !! | CTATATATAAAAAAAATAAG+GGG | + | chr7.4:30442632-30442651 | None:intergenic | 10.0% |
| !! | TAGAAAATGATTTAAATTAA+GGG | - | chr7.4:30442869-30442888 | MS.gene92809:intron | 10.0% |
| !!! | AAATATACTACAATTTTTTT+AGG | + | chr7.4:30444673-30444692 | None:intergenic | 10.0% |
| !!! | AATACAAAATATTTTAACAA+AGG | - | chr7.4:30441577-30441596 | MS.gene92809:CDS | 10.0% |
| !!! | AATATACTACAATTTTTTTA+GGG | + | chr7.4:30444672-30444691 | None:intergenic | 10.0% |
| !!! | AGTTTTTTTTACTTTAAAAA+AGG | + | chr7.4:30442235-30442254 | None:intergenic | 10.0% |
| !!! | ATAAGAGTTTATTTTTTTTT+GGG | - | chr7.4:30444744-30444763 | MS.gene92809:intron | 10.0% |
| !!! | ATTTTATACAAAAAGTTTAA+AGG | - | chr7.4:30444281-30444300 | MS.gene92809:intron | 10.0% |
| !!! | TAGTTTATTTTTTTCAAAAA+GGG | + | chr7.4:30441413-30441432 | None:intergenic | 10.0% |
| !!! | TATAAGAGTTTATTTTTTTT+TGG | - | chr7.4:30444743-30444762 | MS.gene92809:intron | 10.0% |
| !!! | TTAGTTTATTTTTTTCAAAA+AGG | + | chr7.4:30441414-30441433 | None:intergenic | 10.0% |
| !!! | TTTTTATCTTATTTTTTTCT+AGG | + | chr7.4:30442786-30442805 | None:intergenic | 10.0% |
| !! | AAAATCATGTATGTAAATAA+AGG | + | chr7.4:30444492-30444511 | None:intergenic | 15.0% |
| !! | AACAAAAATGACATATAATT+TGG | + | chr7.4:30443009-30443028 | None:intergenic | 15.0% |
| !! | AATTAATGAAAATTAACAAG+TGG | - | chr7.4:30444790-30444809 | MS.gene92809:intron | 15.0% |
| !! | AATTTAAATGAATGACAAAA+TGG | - | chr7.4:30444408-30444427 | MS.gene92809:intron | 15.0% |
| !! | ATGAAAATACAAAAATTTGA+TGG | + | chr7.4:30441442-30441461 | None:intergenic | 15.0% |
| !! | ATTTAGTTAAGTTATTAACA+TGG | + | chr7.4:30445063-30445082 | None:intergenic | 15.0% |
| !! | GTAGAAAATGATTTAAATTA+AGG | - | chr7.4:30442868-30442887 | MS.gene92809:intron | 15.0% |
| !!! | AGTTTATTTTTTTCAAAAAG+GGG | + | chr7.4:30441412-30441431 | None:intergenic | 15.0% |
| !!! | ATATACTACAATTTTTTTAG+GGG | + | chr7.4:30444671-30444690 | None:intergenic | 15.0% |
| !!! | ATATTTGAATGTTTAAAACA+CGG | + | chr7.4:30443851-30443870 | None:intergenic | 15.0% |
| !!! | ATTTTATATAAGGGTATAAT+TGG | - | chr7.4:30442571-30442590 | MS.gene92809:intron | 15.0% |
| !!! | TACACATATTTATTCTAAAA+TGG | + | chr7.4:30441997-30442016 | None:intergenic | 15.0% |
| !!! | TACTTTTTTTTTTTTCTCAA+AGG | - | chr7.4:30443934-30443953 | MS.gene92809:intron | 15.0% |
| !!! | TTTGTATTCAAAATTTTACT+AGG | + | chr7.4:30443735-30443754 | None:intergenic | 15.0% |
| !! | AATAAGATTATATCAAAGAC+AGG | + | chr7.4:30441670-30441689 | None:intergenic | 20.0% |
| !! | ACCAAAATTATGTAAATAGA+AGG | - | chr7.4:30443082-30443101 | MS.gene92809:CDS | 20.0% |
| !! | ATAAGATTATATCAAAGACA+GGG | + | chr7.4:30441669-30441688 | None:intergenic | 20.0% |
| !! | CTATAATAATGTAATATCGT+TGG | + | chr7.4:30442548-30442567 | None:intergenic | 20.0% |
| !! | GATATATACTAATAAATGTG+AGG | + | chr7.4:30444184-30444203 | None:intergenic | 20.0% |
| !! | GCGCTATTAAAAAAAAAAAA+AGG | + | chr7.4:30442314-30442333 | None:intergenic | 20.0% |
| !! | TATACAAAAAGTTTAAAGGA+AGG | - | chr7.4:30444285-30444304 | MS.gene92809:intron | 20.0% |
| !! | TGTCTTTGATATAATCTTAT+TGG | - | chr7.4:30441669-30441688 | MS.gene92809:CDS | 20.0% |
| !! | TTAAACATTCAAATATTGCT+TGG | - | chr7.4:30443855-30443874 | MS.gene92809:intron | 20.0% |
| !!! | AAAAAAAATAAGGGGTTTTT+GGG | + | chr7.4:30442624-30442643 | None:intergenic | 20.0% |
| !!! | AATTTTGACATAGTTTTTGA+AGG | + | chr7.4:30444461-30444480 | None:intergenic | 20.0% |
| !!! | ATCTTATTTTTTTCTAGGTT+AGG | + | chr7.4:30442781-30442800 | None:intergenic | 20.0% |
| !!! | ATGTAAATTTTAACCACTAA+CGG | + | chr7.4:30442978-30442997 | None:intergenic | 20.0% |
| !!! | ATGTTGGTATTTTAAATGTA+GGG | + | chr7.4:30445004-30445023 | None:intergenic | 20.0% |
| !!! | ATTTTGACATAGTTTTTGAA+GGG | + | chr7.4:30444460-30444479 | None:intergenic | 20.0% |
| !!! | CAACTAGTACATTTTATTAA+TGG | - | chr7.4:30443957-30443976 | MS.gene92809:intron | 20.0% |
| !!! | CTTTTTTTCAATTTTTCACT+CGG | - | chr7.4:30441795-30441814 | MS.gene92809:intron | 20.0% |
| !!! | TAAAAAAAATAAGGGGTTTT+TGG | + | chr7.4:30442625-30442644 | None:intergenic | 20.0% |
| !!! | TATACAACTATTTTTTTGAC+TGG | + | chr7.4:30444703-30444722 | None:intergenic | 20.0% |
| ! | AGAATTATGTTTATGCATCA+AGG | - | chr7.4:30442919-30442938 | MS.gene92809:intron | 25.0% |
| ! | AGTTTAAAGGAAGGTAAAAT+TGG | - | chr7.4:30444294-30444313 | MS.gene92809:intron | 25.0% |
| ! | ATATGTCTAACTTATTTCAC+TGG | - | chr7.4:30441742-30441761 | MS.gene92809:intron | 25.0% |
| ! | ATTAATATGTAGAACTCACT+TGG | + | chr7.4:30445027-30445046 | None:intergenic | 25.0% |
| ! | TAGTTATATGTCAACTTCAA+CGG | - | chr7.4:30444620-30444639 | MS.gene92809:intron | 25.0% |
| ! | TCCAATAAATACATATGACA+TGG | - | chr7.4:30444032-30444051 | MS.gene92809:intron | 25.0% |
| ! | TCCATGTCATATGTATTTAT+TGG | + | chr7.4:30444036-30444055 | None:intergenic | 25.0% |
| ! | TTAAGTTATTAACATGGAGA+AGG | + | chr7.4:30445057-30445076 | None:intergenic | 25.0% |
| ! | TTAATTGATCAACAACAACA+TGG | - | chr7.4:30444589-30444608 | MS.gene92809:intron | 25.0% |
| !! | CTATTTAAGATTGTGACATT+CGG | - | chr7.4:30441824-30441843 | MS.gene92809:intron | 25.0% |
| !! | GCCTTCTATTTACATAATTT+TGG | + | chr7.4:30443086-30443105 | None:intergenic | 25.0% |
| !! | GTATTCAAAATTTTACTAGG+TGG | + | chr7.4:30443732-30443751 | None:intergenic | 25.0% |
| !! | TCTTCTACTTCTAATTTTGT+TGG | + | chr7.4:30442044-30442063 | None:intergenic | 25.0% |
| !! | TTACTTTAAAAAAGGATACC+TGG | + | chr7.4:30442227-30442246 | None:intergenic | 25.0% |
| !! | TTTAACTTCAAAGAAACTGA+TGG | - | chr7.4:30445176-30445195 | MS.gene92809:CDS | 25.0% |
| !! | TTTTCAAAACAAAGAAGAAG+AGG | - | chr7.4:30443384-30443403 | MS.gene92809:CDS | 25.0% |
| !!! | AATATTTTAACAAAGGACCT+AGG | - | chr7.4:30441584-30441603 | MS.gene92809:CDS | 25.0% |
| !!! | AATTCACTAGCTTTCTTATT+TGG | - | chr7.4:30443607-30443626 | MS.gene92809:intron | 25.0% |
| !!! | ACCATGTGATTTTAATACAA+CGG | - | chr7.4:30443767-30443786 | MS.gene92809:intron | 25.0% |
| !!! | AGTTTCTTTGAAGTTAAATG+TGG | + | chr7.4:30445174-30445193 | None:intergenic | 25.0% |
| !!! | ATATTTTAACAAAGGACCTA+GGG | - | chr7.4:30441585-30441604 | MS.gene92809:CDS | 25.0% |
| !!! | GATGTTGGTATTTTAAATGT+AGG | + | chr7.4:30445005-30445024 | None:intergenic | 25.0% |
| !!! | TATTTTAAATGTAGGGTACT+TGG | + | chr7.4:30444997-30445016 | None:intergenic | 25.0% |
| !!! | TGTTGCTTTTCAAAGAATTT+TGG | + | chr7.4:30444157-30444176 | None:intergenic | 25.0% |
| !!! | TTTTGACATAGTTTTTGAAG+GGG | + | chr7.4:30444459-30444478 | None:intergenic | 25.0% |
| AAACAAAGAAGAAGAGGTAA+TGG | - | chr7.4:30443390-30443409 | MS.gene92809:CDS | 30.0% | |
| AAAGATTAAGCAAACCACAA+AGG | - | chr7.4:30442072-30442091 | MS.gene92809:intron | 30.0% | |
| AAATACCTTATATGTACTCG+TGG | - | chr7.4:30444102-30444121 | MS.gene92809:intron | 30.0% | |
| AAATATTCCTCTAACTAAGC+CGG | - | chr7.4:30442823-30442842 | MS.gene92809:intron | 30.0% | |
| AATAGAAAAGTCCTCTGAAT+AGG | - | chr7.4:30441887-30441906 | MS.gene92809:intron | 30.0% | |
| AATTGAATGTTGCAAGGAAA+AGG | - | chr7.4:30445248-30445267 | MS.gene92809:CDS | 30.0% | |
| ACCGTTGTATTAAAATCACA+TGG | + | chr7.4:30443771-30443790 | None:intergenic | 30.0% | |
| ATCAACACTATCGTTATGAT+GGG | - | chr7.4:30444207-30444226 | MS.gene92809:intron | 30.0% | |
| ATTGAATGTTGCAAGGAAAA+GGG | - | chr7.4:30445249-30445268 | MS.gene92809:CDS | 30.0% | |
| TATCAACACTATCGTTATGA+TGG | - | chr7.4:30444206-30444225 | MS.gene92809:intron | 30.0% | |
| TCATCAATAGTTGCAATGAA+TGG | + | chr7.4:30444954-30444973 | None:intergenic | 30.0% | |
| TCGTTCTCTTCAAAATCAAT+TGG | + | chr7.4:30443247-30443266 | None:intergenic | 30.0% | |
| TGATATTGACAATAGTCCAT+TGG | - | chr7.4:30444830-30444849 | MS.gene92809:intron | 30.0% | |
| TGATTAAAACCTCGTGAAAA+TGG | - | chr7.4:30444537-30444556 | MS.gene92809:intron | 30.0% | |
| TGTAGTGTACACTAAGAATA+AGG | - | chr7.4:30442013-30442032 | MS.gene92809:intron | 30.0% | |
| TTAATAGCGCTAACACATTT+AGG | - | chr7.4:30442324-30442343 | MS.gene92809:intron | 30.0% | |
| TTGAACATCCTAATCCAAAA+GGG | - | chr7.4:30444913-30444932 | MS.gene92809:intron | 30.0% | |
| ! | AGTGTGTCAAACACTAATTT+TGG | - | chr7.4:30441693-30441712 | MS.gene92809:CDS | 30.0% |
| ! | GAATGTTTAAAACACGGATT+TGG | + | chr7.4:30443845-30443864 | None:intergenic | 30.0% |
| ! | TATTCAGAGGACTTTTCTAT+TGG | + | chr7.4:30441888-30441907 | None:intergenic | 30.0% |
| ! | TCATATTCTAGAGAGCTTAT+GGG | - | chr7.4:30445129-30445148 | MS.gene92809:intron | 30.0% |
| ! | TTCATATTCTAGAGAGCTTA+TGG | - | chr7.4:30445128-30445147 | MS.gene92809:intron | 30.0% |
| !! | AGGTAATGGATGAAAGTTAT+TGG | - | chr7.4:30443404-30443423 | MS.gene92809:CDS | 30.0% |
| !!! | ACATGGAATTTTTTTGCATG+TGG | - | chr7.4:30444049-30444068 | MS.gene92809:intron | 30.0% |
| !!! | ACTATTTTTTTGACTGGACT+TGG | + | chr7.4:30444697-30444716 | None:intergenic | 30.0% |
| !!! | CTAATACCAAGTTTTGTTGT+TGG | - | chr7.4:30443547-30443566 | MS.gene92809:intron | 30.0% |
| AAAGGAAGAGTTTGTGTAAC+TGG | - | chr7.4:30442119-30442138 | MS.gene92809:intron | 35.0% | |
| AATTCCTAATGCTCCATCAA+TGG | + | chr7.4:30443296-30443315 | None:intergenic | 35.0% | |
| AGTGAATTATAAACTGAGCC+AGG | + | chr7.4:30443595-30443614 | None:intergenic | 35.0% | |
| AGTTTCAATGCAGCAATTGA+AGG | - | chr7.4:30443193-30443212 | MS.gene92809:CDS | 35.0% | |
| ATGCATTTGGAAGATTTGTG+AGG | + | chr7.4:30443129-30443148 | None:intergenic | 35.0% | |
| ATTAAGAGACTCCTTGAAGA+TGG | - | chr7.4:30442170-30442189 | MS.gene92809:intron | 35.0% | |
| ATTGCTGCATTGAAACTTTC+TGG | + | chr7.4:30443190-30443209 | None:intergenic | 35.0% | |
| ATTTGGAGAACAACATGGTT+TGG | - | chr7.4:30443513-30443532 | MS.gene92809:intron | 35.0% | |
| CTTGAACATCCTAATCCAAA+AGG | - | chr7.4:30444912-30444931 | MS.gene92809:intron | 35.0% | |
| CTTGAATTTGGAGAACAACA+TGG | - | chr7.4:30443508-30443527 | MS.gene92809:intron | 35.0% | |
| GAAGTTAAATGTGGAAGCTT+AGG | + | chr7.4:30445165-30445184 | None:intergenic | 35.0% | |
| GAGAAAGCTGTTCTTGAATT+TGG | - | chr7.4:30443496-30443515 | MS.gene92809:intron | 35.0% | |
| GTGACAAAAAGAACCATTGA+TGG | - | chr7.4:30443280-30443299 | MS.gene92809:CDS | 35.0% | |
| GTTTCAATGCAGCAATTGAA+GGG | - | chr7.4:30443194-30443213 | MS.gene92809:CDS | 35.0% | |
| TAACAGTGTAACCATCTTCA+AGG | + | chr7.4:30442184-30442203 | None:intergenic | 35.0% | |
| TTAAGATTGTGACATTCGGT+TGG | - | chr7.4:30441828-30441847 | MS.gene92809:intron | 35.0% | |
| TTGCTGCATTGAAACTTTCT+GGG | + | chr7.4:30443189-30443208 | None:intergenic | 35.0% | |
| ! | AAAGAACATCCATTTTCACG+AGG | + | chr7.4:30444549-30444568 | None:intergenic | 35.0% |
| ! | CTTTTTGTCACAATTTCCTC+TGG | + | chr7.4:30443271-30443290 | None:intergenic | 35.0% |
| ! | GGTAGCTAACATCTTTCTTT+TGG | + | chr7.4:30443108-30443127 | None:intergenic | 35.0% |
| ! | GTAGTAATGGAAGATGGAAA+AGG | - | chr7.4:30442101-30442120 | MS.gene92809:intron | 35.0% |
| ! | TGCTATAGCATCACACTTTT+TGG | - | chr7.4:30442944-30442963 | MS.gene92809:CDS | 35.0% |
| ! | TTTTATCCTCCTTGAATGGT+GGG | - | chr7.4:30442846-30442865 | MS.gene92809:intron | 35.0% |
| !! | TTTTTCAAAAAGGGGTTACC+TGG | + | chr7.4:30441404-30441423 | None:intergenic | 35.0% |
| !!! | CTTAGCTTTTGAGATGCATT+TGG | + | chr7.4:30443142-30443161 | None:intergenic | 35.0% |
| AAAGGAAGAGTTTGTGTGAC+TGG | - | chr7.4:30441296-30441315 | MS.gene92809:CDS | 40.0% | |
| AACATCCTAATCCAAAAGGG+AGG | - | chr7.4:30444916-30444935 | MS.gene92809:intron | 40.0% | |
| AAGGGTCCAACAACAAAACT+TGG | + | chr7.4:30443556-30443575 | None:intergenic | 40.0% | |
| AATCAATTGGAGTAGCTGTG+TGG | + | chr7.4:30443234-30443253 | None:intergenic | 40.0% | |
| ACAGCATATGACCAAGCAAA+AGG | + | chr7.4:30443460-30443479 | None:intergenic | 40.0% | |
| ACCACTGTTAGATCTAATCC+AGG | - | chr7.4:30441383-30441402 | MS.gene92809:CDS | 40.0% | |
| AGAGAGCTTATGGGAGTTAA+AGG | - | chr7.4:30445138-30445157 | MS.gene92809:intron | 40.0% | |
| AGCCTTGAGGAAATGTTTGA+GGG | - | chr7.4:30445222-30445241 | MS.gene92809:CDS | 40.0% | |
| AGTTTGTGTAACTGGAGGTA+CGG | - | chr7.4:30442127-30442146 | MS.gene92809:intron | 40.0% | |
| ATCAAGAGACTCCTTGAAGA+TGG | - | chr7.4:30441347-30441366 | MS.gene92809:CDS | 40.0% | |
| ATTACTACACTCCTCCTTTG+TGG | + | chr7.4:30442089-30442108 | None:intergenic | 40.0% | |
| ATTTCCACAGACCTATTCAG+AGG | + | chr7.4:30441901-30441920 | None:intergenic | 40.0% | |
| CCATTCAAGGAGGATAAAAC+CGG | + | chr7.4:30442845-30442864 | None:intergenic | 40.0% | |
| GAGCAAGAAAATTAAGCCCT+AGG | + | chr7.4:30441604-30441623 | None:intergenic | 40.0% | |
| GATTAAGCAAACCACAAAGG+AGG | - | chr7.4:30442075-30442094 | MS.gene92809:intron | 40.0% | |
| GTGCTTACTGCAATAATCGT+AGG | - | chr7.4:30443797-30443816 | MS.gene92809:intron | 40.0% | |
| GTTAGCCACGAGTACATATA+AGG | + | chr7.4:30444110-30444129 | None:intergenic | 40.0% | |
| TAACAGCGTAACCATCTTCA+AGG | + | chr7.4:30441361-30441380 | None:intergenic | 40.0% | |
| TGGCTAACTTTCATCTGTGT+TGG | - | chr7.4:30444122-30444141 | MS.gene92809:intron | 40.0% | |
| TGTAGAACTCACTTGGATGT+TGG | + | chr7.4:30445020-30445039 | None:intergenic | 40.0% | |
| ! | ACAAAGGAGGAGTGTAGTAA+TGG | - | chr7.4:30442088-30442107 | MS.gene92809:intron | 40.0% |
| ! | ACACGGATTTGGATTAGATG+CGG | + | chr7.4:30443834-30443853 | None:intergenic | 40.0% |
| ! | ACCTGGATTAGATCTAACAG+TGG | + | chr7.4:30441387-30441406 | None:intergenic | 40.0% |
| ! | AGAACCATTGATGGAGCATT+AGG | - | chr7.4:30443289-30443308 | MS.gene92809:CDS | 40.0% |
| ! | AGGAGTGTAGTAATGGAAGA+TGG | - | chr7.4:30442095-30442114 | MS.gene92809:intron | 40.0% |
| ! | CAAGTTCAAGTATAGCCTTG+AGG | - | chr7.4:30445209-30445228 | MS.gene92809:CDS | 40.0% |
| ! | CATTTTCTACCCACCATTCA+AGG | + | chr7.4:30442858-30442877 | None:intergenic | 40.0% |
| ! | GATAAAACCGGCTTAGTTAG+AGG | + | chr7.4:30442833-30442852 | None:intergenic | 40.0% |
| ! | GATACCTGGACTAGATCTAA+CGG | + | chr7.4:30442213-30442232 | None:intergenic | 40.0% |
| ! | GTTTTATCCTCCTTGAATGG+TGG | - | chr7.4:30442845-30442864 | MS.gene92809:intron | 40.0% |
| ! | TAGCCTTGAGGAAATGTTTG+AGG | - | chr7.4:30445221-30445240 | MS.gene92809:CDS | 40.0% |
| ! | TCAAAGAAACTGATGGATGC+TGG | - | chr7.4:30445183-30445202 | MS.gene92809:CDS | 40.0% |
| ! | TTGTACCTCCCTTTTGGATT+AGG | + | chr7.4:30444924-30444943 | None:intergenic | 40.0% |
| !! | GTACAGGGTTTATTGGTTCA+TGG | - | chr7.4:30441321-30441340 | MS.gene92809:CDS | 40.0% |
| !! | TTTTGAAGAGAACGAACCAG+AGG | - | chr7.4:30443252-30443271 | MS.gene92809:CDS | 40.0% |
| !!! | GAACTTTGAAGCCTTTTGCT+TGG | - | chr7.4:30443446-30443465 | MS.gene92809:intron | 40.0% |
| AAACTGAGCCAGGAAGCTTA+GGG | + | chr7.4:30443585-30443604 | None:intergenic | 45.0% | |
| AAGTCCTCTGAATAGGTCTG+TGG | - | chr7.4:30441894-30441913 | MS.gene92809:intron | 45.0% | |
| AAGTGGAAGTTGTTGCATGC+AGG | - | chr7.4:30444807-30444826 | MS.gene92809:intron | 45.0% | |
| AGACGAGCACGTGAGTTTAA+CGG | + | chr7.4:30442289-30442308 | None:intergenic | 45.0% | |
| AGGAAGCTTAGGGCAAATGA+AGG | + | chr7.4:30443575-30443594 | None:intergenic | 45.0% | |
| CGTCATCAACATGCACCATA+TGG | + | chr7.4:30444869-30444888 | None:intergenic | 45.0% | |
| GCTGCTCTTCGAAGAATTGT+TGG | - | chr7.4:30443995-30444014 | MS.gene92809:intron | 45.0% | |
| GGAAGAGTTTGTGTAACTGG+AGG | - | chr7.4:30442122-30442141 | MS.gene92809:intron | 45.0% | |
| GGAAGCTTAGGGCAAATGAA+GGG | + | chr7.4:30443574-30443593 | None:intergenic | 45.0% | |
| TAAACTGAGCCAGGAAGCTT+AGG | + | chr7.4:30443586-30443605 | None:intergenic | 45.0% | |
| TATTTCACTGGACCGAGCTT+CGG | - | chr7.4:30441754-30441773 | MS.gene92809:intron | 45.0% | |
| TTCATTTGCCCTAAGCTTCC+TGG | - | chr7.4:30443574-30443593 | MS.gene92809:intron | 45.0% | |
| TTTCTACCCACCATTCAAGG+AGG | + | chr7.4:30442855-30442874 | None:intergenic | 45.0% | |
| ! | ACTGGAGGTACAGGGTTTAT+TGG | - | chr7.4:30441314-30441333 | MS.gene92809:CDS | 45.0% |
| ! | GAGCAATTGTACCTCCCTTT+TGG | + | chr7.4:30444930-30444949 | None:intergenic | 45.0% |
| ! | GTTTGTGTAACTGGAGGTAC+GGG | - | chr7.4:30442128-30442147 | MS.gene92809:intron | 45.0% |
| ! | TTTGGTGCATTCTCCGTTAG+TGG | - | chr7.4:30442962-30442981 | MS.gene92809:CDS | 45.0% |
| ! | TTTGTGTAACTGGAGGTACG+GGG | - | chr7.4:30442129-30442148 | MS.gene92809:intron | 45.0% |
| ! | TTTGTGTGACTGGAGGTACA+GGG | - | chr7.4:30441306-30441325 | MS.gene92809:CDS | 45.0% |
| !! | CCGGTTTTATCCTCCTTGAA+TGG | - | chr7.4:30442842-30442861 | MS.gene92809:intron | 45.0% |
| !! | TTTTGATAGCAGCCGAAGCT+CGG | + | chr7.4:30441769-30441788 | None:intergenic | 45.0% |
| !! | AATATTTAATAAAAAAAAGT+TGG | - | chr7.4:30442669-30442688 | MS.gene92809:intron | 5.0% |
| !! | ACTATATATAAAAAAAATAA+GGG | + | chr7.4:30442633-30442652 | None:intergenic | 5.0% |
| !! | TACTATATATAAAAAAAATA+AGG | + | chr7.4:30442634-30442653 | None:intergenic | 5.0% |
| !!! | ATTATAGAAAATTTTATATA+AGG | - | chr7.4:30442561-30442580 | MS.gene92809:intron | 5.0% |
| !!! | TTAATTTAAAAATCTTTTAT+AGG | + | chr7.4:30444776-30444795 | None:intergenic | 5.0% |
| !!! | TTATAGAAAATTTTATATAA+GGG | - | chr7.4:30442562-30442581 | MS.gene92809:intron | 5.0% |
| ATGCACCATATGGAGACGAG+AGG | + | chr7.4:30444859-30444878 | None:intergenic | 50.0% | |
| CGCCCTCAAACATTTCCTCA+AGG | + | chr7.4:30445227-30445246 | None:intergenic | 50.0% | |
| GGAAGAGTTTGTGTGACTGG+AGG | - | chr7.4:30441299-30441318 | MS.gene92809:CDS | 50.0% | |
| GGGCGCAATTGAATGTTGCA+AGG | - | chr7.4:30445242-30445261 | MS.gene92809:CDS | 50.0% | |
| GTACGGGGTTTCTTGGTTCA+TGG | - | chr7.4:30442144-30442163 | MS.gene92809:intron | 50.0% | |
| TCCACCGTTAGATCTAGTCC+AGG | - | chr7.4:30442206-30442225 | MS.gene92809:intron | 50.0% | |
| ! | ACCTGGACTAGATCTAACGG+TGG | + | chr7.4:30442210-30442229 | None:intergenic | 50.0% |
| ! | GCAGCAATTGAAGGGTGCAT+TGG | - | chr7.4:30443202-30443221 | MS.gene92809:CDS | 50.0% |
| ! | GTTTGTGTGACTGGAGGTAC+AGG | - | chr7.4:30441305-30441324 | MS.gene92809:CDS | 50.0% |
| ! | ACTGGAGGTACGGGGTTTCT+TGG | - | chr7.4:30442137-30442156 | MS.gene92809:intron | 55.0% |
| GGCAGCCTCTCGTCTCCATA+TGG | - | chr7.4:30444851-30444870 | MS.gene92809:intron | 60.0% | |
| TGGAGACGAGAGGCTGCCAA+TGG | + | chr7.4:30444849-30444868 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 30441284 | 30445281 | 30441284 | ID=MS.gene92809 |
| chr7.4 | mRNA | 30441284 | 30445281 | 30441284 | ID=MS.gene92809.t1;Parent=MS.gene92809 |
| chr7.4 | exon | 30445161 | 30445281 | 30445161 | ID=MS.gene92809.t1.exon1;Parent=MS.gene92809.t1 |
| chr7.4 | CDS | 30445161 | 30445281 | 30445161 | ID=cds.MS.gene92809.t1;Parent=MS.gene92809.t1 |
| chr7.4 | exon | 30442937 | 30443464 | 30442937 | ID=MS.gene92809.t1.exon2;Parent=MS.gene92809.t1 |
| chr7.4 | CDS | 30442937 | 30443464 | 30442937 | ID=cds.MS.gene92809.t1;Parent=MS.gene92809.t1 |
| chr7.4 | exon | 30441538 | 30441736 | 30441538 | ID=MS.gene92809.t1.exon3;Parent=MS.gene92809.t1 |
| chr7.4 | CDS | 30441538 | 30441736 | 30441538 | ID=cds.MS.gene92809.t1;Parent=MS.gene92809.t1 |
| chr7.4 | exon | 30441284 | 30441425 | 30441284 | ID=MS.gene92809.t1.exon4;Parent=MS.gene92809.t1 |
| chr7.4 | CDS | 30441284 | 30441425 | 30441284 | ID=cds.MS.gene92809.t1;Parent=MS.gene92809.t1 |
| Gene Sequence |
| Protein sequence |
