Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93159.t1 | XP_024631268.1 | 98.5 | 454 | 7 | 0 | 1 | 454 | 1 | 454 | 6.50E-261 | 909.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93159.t1 | O49285 | 69.2 | 461 | 125 | 7 | 1 | 453 | 1 | 452 | 1.1e-181 | 637.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93159.t1 | A0A396JL16 | 98.5 | 454 | 7 | 0 | 1 | 454 | 1 | 454 | 4.7e-261 | 909.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene93159 | MS.gene015275 | PPI |
MS.gene93159 | MS.gene44446 | PPI |
MS.gene93159 | MS.gene43525 | PPI |
MS.gene93159 | MS.gene60184 | PPI |
MS.gene93159 | MS.gene011698 | PPI |
MS.gene93159 | MS.gene20314 | PPI |
MS.gene09616 | MS.gene93159 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93159.t1 | MTR_1g029520 | 98.372 | 430 | 7 | 0 | 25 | 454 | 254 | 683 | 0.0 | 876 |
MS.gene93159.t1 | MTR_3g088885 | 80.617 | 454 | 80 | 6 | 1 | 453 | 1 | 447 | 0.0 | 741 |
MS.gene93159.t1 | MTR_5g047260 | 53.303 | 439 | 185 | 7 | 8 | 446 | 16 | 434 | 2.02e-152 | 441 |
MS.gene93159.t1 | MTR_7g022470 | 51.910 | 445 | 201 | 6 | 9 | 453 | 10 | 441 | 2.94e-151 | 437 |
MS.gene93159.t1 | MTR_7g028050 | 48.539 | 445 | 218 | 6 | 9 | 452 | 1 | 435 | 2.73e-140 | 409 |
MS.gene93159.t1 | MTR_4g101950 | 46.387 | 429 | 190 | 7 | 6 | 426 | 3 | 399 | 2.29e-131 | 387 |
MS.gene93159.t1 | MTR_5g011580 | 44.812 | 453 | 221 | 8 | 6 | 453 | 3 | 431 | 1.19e-128 | 380 |
MS.gene93159.t1 | MTR_5g015170 | 46.667 | 435 | 213 | 8 | 10 | 432 | 10 | 437 | 1.22e-128 | 381 |
MS.gene93159.t1 | MTR_5g047260 | 52.078 | 361 | 157 | 5 | 8 | 368 | 16 | 360 | 1.37e-121 | 359 |
MS.gene93159.t1 | MTR_4g097380 | 42.619 | 420 | 233 | 3 | 7 | 420 | 26 | 443 | 2.51e-117 | 352 |
MS.gene93159.t1 | MTR_5g047260 | 53.074 | 309 | 130 | 4 | 8 | 316 | 16 | 309 | 6.41e-104 | 312 |
MS.gene93159.t1 | MTR_7g028050 | 48.048 | 333 | 167 | 4 | 121 | 452 | 5 | 332 | 1.40e-97 | 296 |
MS.gene93159.t1 | MTR_1g012740 | 48.000 | 100 | 46 | 1 | 283 | 382 | 54 | 147 | 2.25e-23 | 96.7 |
MS.gene93159.t1 | MTR_1g012740 | 35.099 | 151 | 69 | 6 | 6 | 150 | 7 | 134 | 2.30e-16 | 77.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93159.t1 | AT1G76990 | 69.197 | 461 | 125 | 7 | 1 | 453 | 1 | 452 | 0.0 | 653 |
MS.gene93159.t1 | AT1G76990 | 69.197 | 461 | 125 | 7 | 1 | 453 | 1 | 452 | 0.0 | 653 |
MS.gene93159.t1 | AT1G76990 | 69.197 | 461 | 125 | 7 | 1 | 453 | 1 | 452 | 0.0 | 653 |
MS.gene93159.t1 | AT1G76990 | 69.197 | 461 | 125 | 7 | 1 | 453 | 1 | 452 | 0.0 | 653 |
MS.gene93159.t1 | AT1G76990 | 69.197 | 461 | 125 | 7 | 1 | 453 | 1 | 452 | 0.0 | 653 |
MS.gene93159.t1 | AT1G69040 | 52.339 | 449 | 189 | 9 | 9 | 450 | 11 | 441 | 7.97e-149 | 432 |
MS.gene93159.t1 | AT1G69040 | 52.339 | 449 | 189 | 9 | 9 | 450 | 7 | 437 | 8.30e-149 | 431 |
MS.gene93159.t1 | AT5G25320 | 49.660 | 441 | 194 | 7 | 1 | 414 | 1 | 440 | 9.11e-148 | 431 |
MS.gene93159.t1 | AT2G03730 | 49.782 | 458 | 206 | 9 | 4 | 451 | 3 | 446 | 1.07e-143 | 419 |
MS.gene93159.t1 | AT2G03730 | 49.782 | 458 | 206 | 9 | 4 | 451 | 3 | 446 | 1.07e-143 | 419 |
MS.gene93159.t1 | AT3G01990 | 50.246 | 406 | 187 | 5 | 10 | 415 | 17 | 407 | 1.19e-135 | 398 |
MS.gene93159.t1 | AT3G01990 | 50.246 | 406 | 187 | 5 | 10 | 415 | 17 | 407 | 1.19e-135 | 398 |
MS.gene93159.t1 | AT3G01990 | 50.246 | 406 | 187 | 5 | 10 | 415 | 3 | 393 | 1.66e-135 | 397 |
MS.gene93159.t1 | AT3G01990 | 50.246 | 406 | 187 | 5 | 10 | 415 | 3 | 393 | 1.66e-135 | 397 |
MS.gene93159.t1 | AT3G01990 | 50.246 | 406 | 187 | 5 | 10 | 415 | 17 | 407 | 2.10e-135 | 397 |
MS.gene93159.t1 | AT3G01990 | 50.246 | 406 | 187 | 5 | 10 | 415 | 3 | 393 | 2.43e-135 | 396 |
MS.gene93159.t1 | AT5G25320 | 48.507 | 402 | 181 | 5 | 38 | 414 | 1 | 401 | 1.65e-128 | 380 |
MS.gene93159.t1 | AT4G22780 | 48.030 | 406 | 184 | 5 | 12 | 415 | 9 | 389 | 1.03e-125 | 372 |
MS.gene93159.t1 | AT4G22780 | 48.030 | 406 | 184 | 5 | 12 | 415 | 9 | 389 | 1.03e-125 | 372 |
MS.gene93159.t1 | AT1G12420 | 45.476 | 420 | 206 | 8 | 8 | 427 | 6 | 402 | 1.24e-120 | 359 |
MS.gene93159.t1 | AT5G25320 | 47.326 | 374 | 169 | 7 | 1 | 347 | 1 | 373 | 2.75e-113 | 338 |
MS.gene93159.t1 | AT5G65890 | 40.890 | 472 | 248 | 7 | 7 | 454 | 8 | 472 | 1.08e-112 | 340 |
MS.gene93159.t1 | AT5G65890 | 40.890 | 472 | 248 | 7 | 7 | 454 | 8 | 472 | 1.08e-112 | 340 |
MS.gene93159.t1 | AT3G01990 | 48.980 | 343 | 160 | 5 | 10 | 352 | 17 | 344 | 2.05e-107 | 322 |
MS.gene93159.t1 | AT3G01990 | 48.980 | 343 | 160 | 5 | 10 | 352 | 3 | 330 | 2.25e-107 | 322 |
MS.gene93159.t1 | AT3G01990 | 49.408 | 338 | 156 | 5 | 10 | 347 | 17 | 339 | 4.37e-107 | 321 |
MS.gene93159.t1 | AT1G12420 | 43.182 | 352 | 178 | 7 | 76 | 427 | 1 | 330 | 6.68e-92 | 283 |
MS.gene93159.t1 | AT5G65890 | 38.642 | 427 | 231 | 7 | 52 | 454 | 1 | 420 | 3.45e-91 | 283 |
MS.gene93159.t1 | AT5G65890 | 38.642 | 427 | 231 | 7 | 52 | 454 | 1 | 420 | 3.45e-91 | 283 |
MS.gene93159.t1 | AT3G01990 | 47.003 | 317 | 153 | 5 | 10 | 326 | 17 | 318 | 8.29e-88 | 271 |
MS.gene93159.t1 | AT3G01990 | 47.003 | 317 | 153 | 5 | 10 | 326 | 3 | 304 | 8.81e-88 | 270 |
MS.gene93159.t1 | AT5G65890 | 37.143 | 350 | 197 | 5 | 124 | 454 | 13 | 358 | 6.82e-68 | 221 |
Find 134 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCCAACTCTTCACACCTTC+TGG | 0.132030 | 1.3:+15453591 | None:intergenic |
TTGATTCTCCTCCCTCTTTC+AGG | 0.151257 | 1.3:-15453170 | MS.gene93159:CDS |
TTCTGATGGTAGTTGGTTTA+TGG | 0.190044 | 1.3:-15454396 | MS.gene93159:CDS |
AATACGTTCTATTTCGATAA+TGG | 0.203955 | 1.3:+15453146 | None:intergenic |
GCCCATCCTCGAGAGGTTTC+TGG | 0.246221 | 1.3:+15450896 | None:intergenic |
ATACGTTCTATTTCGATAAT+GGG | 0.299154 | 1.3:+15453147 | None:intergenic |
CCCAACTCTTCACACCTTCT+GGG | 0.315377 | 1.3:+15453592 | None:intergenic |
GAAGCACTGCGTAAAGAAAT+TGG | 0.317035 | 1.3:-15450968 | MS.gene93159:CDS |
GCTAGAGTAAGCTTCTTCTT+TGG | 0.317293 | 1.3:-15450875 | MS.gene93159:CDS |
CTAGAGTAAGCTTCTTCTTT+GGG | 0.326628 | 1.3:-15450874 | MS.gene93159:CDS |
CCAAATGTTGTTTGCTGATA+GGG | 0.330716 | 1.3:-15453232 | MS.gene93159:CDS |
ATAGAACGTATTGAAGAAAA+AGG | 0.338531 | 1.3:-15453135 | MS.gene93159:CDS |
ACCAAATGTTGTTTGCTGAT+AGG | 0.341425 | 1.3:-15453233 | MS.gene93159:CDS |
TCCACTTCGCAGGGTCTCTA+TGG | 0.347979 | 1.3:-15455056 | MS.gene93159:intron |
CCCTATCAGCAAACAACATT+TGG | 0.356933 | 1.3:+15453232 | None:intergenic |
ATTTAGTCCTTTCTCTCCTA+TGG | 0.378855 | 1.3:+15451042 | None:intergenic |
CTTCTTCTTTGGGAACTTGT+TGG | 0.378986 | 1.3:-15450864 | MS.gene93159:CDS |
GGTGAAACCCATGGAGAAAC+TGG | 0.381534 | 1.3:+15453281 | None:intergenic |
TCGAGAGGTTTCTGGTGCTT+TGG | 0.382279 | 1.3:+15450904 | None:intergenic |
ATCAGAAGATATGTAAGCTT+TGG | 0.390558 | 1.3:+15454412 | None:intergenic |
CAGCTGCAATCACATTGAAT+TGG | 0.392381 | 1.3:+15453460 | None:intergenic |
TCTGGGCTCTTGCGGCCCTT+TGG | 0.393975 | 1.3:+15453609 | None:intergenic |
ACGACTTCCAGCAGAATTCC+CGG | 0.398838 | 1.3:+15454467 | None:intergenic |
CTGAAGTTTGGACTCATAAC+AGG | 0.401956 | 1.3:-15453440 | MS.gene93159:CDS |
TCTGGTGCTTTGGTGTTGGC+TGG | 0.406285 | 1.3:+15450914 | None:intergenic |
ACATATCTTCTGATGGTAGT+TGG | 0.412715 | 1.3:-15454403 | MS.gene93159:CDS |
GATTGATAGCGTCAATAAAC+CGG | 0.415676 | 1.3:-15454486 | MS.gene93159:CDS |
ATGTGATTGCAGCTGAAGTT+TGG | 0.418119 | 1.3:-15453452 | MS.gene93159:CDS |
GCCCAGAAGGTGTGAAGAGT+TGG | 0.421778 | 1.3:-15453593 | MS.gene93159:CDS |
AGAACGGCTTAACAGTTTGT+AGG | 0.425881 | 1.3:-15451078 | MS.gene93159:CDS |
CATTGAATTGGAAGCTCGCC+AGG | 0.426882 | 1.3:+15453472 | None:intergenic |
GGTTTCTGGTGCTTTGGTGT+TGG | 0.431935 | 1.3:+15450910 | None:intergenic |
AATTATTGACTTTATTGAAA+AGG | 0.437841 | 1.3:-15454091 | MS.gene93159:intron |
CAATAAACCGGGAATTCTGC+TGG | 0.451982 | 1.3:-15454474 | MS.gene93159:CDS |
ATTGAATGGCAAAAGTTTGC+TGG | 0.454558 | 1.3:-15455565 | None:intergenic |
TCGTACTCAGGATCAAAGTA+TGG | 0.456449 | 1.3:+15455542 | None:intergenic |
CATACAGCCATTGAGCTCAT+TGG | 0.456613 | 1.3:-15453534 | MS.gene93159:CDS |
CCCAGAAGGTGTGAAGAGTT+GGG | 0.459787 | 1.3:-15453592 | MS.gene93159:CDS |
TCTTTGGGAACTTGTTGGAA+AGG | 0.462241 | 1.3:-15450859 | MS.gene93159:CDS |
CATGCCTCCATCTCATCTGA+AGG | 0.466025 | 1.3:-15453021 | MS.gene93159:CDS |
TGAAGAGTTGGGAAGGCAAA+CGG | 0.470682 | 1.3:-15453581 | MS.gene93159:CDS |
GGCTTAACAGTTTGTAGGGC+AGG | 0.471990 | 1.3:-15451073 | MS.gene93159:CDS |
GCCCGGACCAGTTTCTCCAT+GGG | 0.476717 | 1.3:-15453288 | MS.gene93159:CDS |
GGCCCGGACCAGTTTCTCCA+TGG | 0.476875 | 1.3:-15453289 | MS.gene93159:CDS |
TGATGCAACAAACCAAGGTC+TGG | 0.477403 | 1.3:-15453391 | MS.gene93159:CDS |
ACACTGAAGGGGAGAAAGAA+AGG | 0.477680 | 1.3:-15452084 | MS.gene93159:CDS |
TCAATGATGTTCATATCCAC+AGG | 0.481133 | 1.3:+15450989 | None:intergenic |
TTGCTGAAGTTCTCGTACTC+AGG | 0.482576 | 1.3:+15455530 | None:intergenic |
TTATGAAGTCAAGGTCTGTC+AGG | 0.485620 | 1.3:+15454438 | None:intergenic |
CGGGTTGGCATTCACTCCAT+TGG | 0.490248 | 1.3:-15453561 | MS.gene93159:CDS |
GTCTGAGATATCAGCTGTCC+TGG | 0.493937 | 1.3:-15453490 | MS.gene93159:CDS |
AACCCATGGAGAAACTGGTC+CGG | 0.494805 | 1.3:+15453286 | None:intergenic |
CTCATTGGTCGGGACCGTCC+AGG | 0.495249 | 1.3:-15453519 | MS.gene93159:CDS |
TCACATTGACCATCACAGTC+TGG | 0.502894 | 1.3:+15450945 | None:intergenic |
GAAGAGTTGGGAAGGCAAAC+GGG | 0.503318 | 1.3:-15453580 | MS.gene93159:CDS |
TTGAATCATCATCCAGACCT+TGG | 0.507102 | 1.3:+15453379 | None:intergenic |
ATTCTTAGGAGTACTTCATC+AGG | 0.510626 | 1.3:-15452129 | MS.gene93159:intron |
TGAACATTTAAATAGGCTCT+AGG | 0.512518 | 1.3:-15453633 | MS.gene93159:intron |
CCATGATTGTACACTGATCA+AGG | 0.512717 | 1.3:-15455020 | MS.gene93159:intron |
ACCCATGGAGAAACTGGTCC+GGG | 0.514443 | 1.3:+15453287 | None:intergenic |
AGCCATTGAGCTCATTGGTC+GGG | 0.518001 | 1.3:-15453529 | MS.gene93159:CDS |
TTCGATAATGGGCCTGAAAG+AGG | 0.518921 | 1.3:+15453158 | None:intergenic |
CCTTGATCAGTGTACAATCA+TGG | 0.522276 | 1.3:+15455020 | None:intergenic |
TCGATAATGGGCCTGAAAGA+GGG | 0.522792 | 1.3:+15453159 | None:intergenic |
CACCAGAAACCTCTCGAGGA+TGG | 0.523676 | 1.3:-15450898 | MS.gene93159:CDS |
AAGCTCAACCACATCCTTCG+TGG | 0.529052 | 1.3:-15453333 | MS.gene93159:CDS |
TATCAGCAAACAACATTTGG+TGG | 0.529977 | 1.3:+15453235 | None:intergenic |
TGAAGGGCCATATGCTTCAC+AGG | 0.531696 | 1.3:-15453004 | MS.gene93159:intron |
TTCTATGTGAGAGATGCATA+TGG | 0.536976 | 1.3:-15451016 | MS.gene93159:CDS |
TAGTGTGAGATGCAAAGATC+GGG | 0.541924 | 1.3:-15453100 | MS.gene93159:CDS |
GATGGTAGTTGGTTTATGGA+TGG | 0.543454 | 1.3:-15454392 | MS.gene93159:intron |
GAGTTAACAGGGAACCTTGG+AGG | 0.545613 | 1.3:+15455497 | None:intergenic |
TACTTCATCAGGCACGTGGA+TGG | 0.545747 | 1.3:-15452118 | MS.gene93159:CDS |
GTGTCAACCATAGGAGAGAA+AGG | 0.546097 | 1.3:-15451049 | MS.gene93159:CDS |
CCTTCTGTCCATGTGGGTGA+AGG | 0.546823 | 1.3:+15453260 | None:intergenic |
ACCAGAAACCTCTCGAGGAT+GGG | 0.548981 | 1.3:-15450897 | MS.gene93159:CDS |
GAACGGCTTAACAGTTTGTA+GGG | 0.558245 | 1.3:-15451077 | MS.gene93159:CDS |
ATGCATACCTGTGAAGCATA+TGG | 0.558826 | 1.3:+15452997 | None:intergenic |
TAAATAGGCTCTAGGACCAA+AGG | 0.562311 | 1.3:-15453625 | MS.gene93159:intron |
AAGGGCCGCAAGAGCCCAGA+AGG | 0.562789 | 1.3:-15453606 | MS.gene93159:CDS |
GGATGCACACTTGACACTGA+AGG | 0.564728 | 1.3:-15452097 | MS.gene93159:CDS |
GGGTTTCACCTTCACCCACA+TGG | 0.565505 | 1.3:-15453268 | MS.gene93159:CDS |
GCTTGCTGTCTGAAGTGACT+AGG | 0.566444 | 1.3:-15451111 | MS.gene93159:CDS |
CTTTGGTTATTATGAAGTCA+AGG | 0.566582 | 1.3:+15454429 | None:intergenic |
AGTTAACAGGGAACCTTGGA+GGG | 0.567218 | 1.3:+15455498 | None:intergenic |
TCACACCTTCTGGGCTCTTG+CGG | 0.569295 | 1.3:+15453601 | None:intergenic |
AAATAGGCTCTAGGACCAAA+GGG | 0.571475 | 1.3:-15453624 | MS.gene93159:intron |
CCTCACAACCACGAAGGATG+TGG | 0.572226 | 1.3:+15453325 | None:intergenic |
GTCCCGACCAATGAGCTCAA+TGG | 0.573813 | 1.3:+15453527 | None:intergenic |
CCTTCACCCACATGGACAGA+AGG | 0.575437 | 1.3:-15453260 | MS.gene93159:CDS |
TATCCTTTGCACACAGCTCA+AGG | 0.579485 | 1.3:+15451140 | None:intergenic |
GATGCACACTTGACACTGAA+GGG | 0.583904 | 1.3:-15452096 | MS.gene93159:CDS |
CCACATCCTTCGTGGTTGTG+AGG | 0.585266 | 1.3:-15453325 | MS.gene93159:CDS |
TACTCTAGCCCATCCTCGAG+AGG | 0.585301 | 1.3:+15450889 | None:intergenic |
AATGGCTGTATGATCACCAA+TGG | 0.585858 | 1.3:+15453545 | None:intergenic |
TTAGTGTGAGATGCAAAGAT+CGG | 0.586475 | 1.3:-15453101 | MS.gene93159:CDS |
AGGGCAGGTGTGTCAACCAT+AGG | 0.587010 | 1.3:-15451058 | MS.gene93159:CDS |
GTGGAGCCTTCTGTCCATGT+GGG | 0.594043 | 1.3:+15453254 | None:intergenic |
AAAGCTTACATATCTTCTGA+TGG | 0.594595 | 1.3:-15454410 | MS.gene93159:CDS |
CAGCCATTGAGCTCATTGGT+CGG | 0.596989 | 1.3:-15453530 | MS.gene93159:CDS |
AGTTGGGAAGGCAAACGGGT+TGG | 0.597769 | 1.3:-15453576 | MS.gene93159:CDS |
CAATGATGTTCATATCCACA+GGG | 0.601090 | 1.3:+15450990 | None:intergenic |
GAAGGTGTGAAGAGTTGGGA+AGG | 0.603934 | 1.3:-15453588 | MS.gene93159:CDS |
ATATGGCCCTTCAGATGAGA+TGG | 0.605356 | 1.3:+15453014 | None:intergenic |
GATAGGGATTATGAGAGTGC+TGG | 0.606196 | 1.3:-15453216 | MS.gene93159:CDS |
ATGCCTCCATCTCATCTGAA+GGG | 0.606421 | 1.3:-15453020 | MS.gene93159:CDS |
CACTGAAGGGGAGAAAGAAA+GGG | 0.607213 | 1.3:-15452083 | MS.gene93159:CDS |
GTCAATGATGCAACAAACCA+AGG | 0.609853 | 1.3:-15453396 | MS.gene93159:CDS |
ATGAACAGTATTTCATGTCA+CGG | 0.611220 | 1.3:-15454145 | MS.gene93159:intron |
TGTGATGGTCAATGTGAAGA+AGG | 0.612803 | 1.3:-15450939 | MS.gene93159:CDS |
ACTAGGATTCTACGAGAGAA+CGG | 0.613355 | 1.3:-15451094 | MS.gene93159:CDS |
AGAAATTGGCCAGACTGTGA+TGG | 0.614374 | 1.3:-15450954 | MS.gene93159:CDS |
GCAACAGAATCAACCCTCCA+AGG | 0.615590 | 1.3:-15455511 | MS.gene93159:intron |
GATATCTCAGACAAAAGACC+TGG | 0.616057 | 1.3:+15453501 | None:intergenic |
AGGGATTATGAGAGTGCTGG+TGG | 0.616212 | 1.3:-15453213 | MS.gene93159:CDS |
TGTCTGCACTCTTACTGACA+TGG | 0.618144 | 1.3:-15453058 | MS.gene93159:CDS |
TATTCAAAGAAGAGTAAGCG+AGG | 0.636120 | 1.3:-15452038 | MS.gene93159:intron |
GGTGGAGCCTTCTGTCCATG+TGG | 0.646466 | 1.3:+15453253 | None:intergenic |
TGGCCCTTCAGATGAGATGG+AGG | 0.653838 | 1.3:+15453017 | None:intergenic |
TTGTGAGGATGATGAGAATG+TGG | 0.655874 | 1.3:-15453310 | MS.gene93159:CDS |
GTGGGTGAAGGTGAAACCCA+TGG | 0.659048 | 1.3:+15453272 | None:intergenic |
ATTGATAGCGTCAATAAACC+GGG | 0.662972 | 1.3:-15454485 | MS.gene93159:CDS |
GGAGTACTTCATCAGGCACG+TGG | 0.663877 | 1.3:-15452122 | MS.gene93159:CDS |
ATGCACACTTGACACTGAAG+GGG | 0.665219 | 1.3:-15452095 | MS.gene93159:CDS |
GAGCCTTGAGCTGTGTGCAA+AGG | 0.668681 | 1.3:-15451143 | MS.gene93159:CDS |
TTTCATGTCACGGATCAGCA+AGG | 0.670024 | 1.3:-15454135 | MS.gene93159:CDS |
AGGATGATGAGAATGTGGCC+CGG | 0.675899 | 1.3:-15453305 | MS.gene93159:CDS |
CTGTGTGCAAAGGATAGAGT+GGG | 0.677348 | 1.3:-15451133 | MS.gene93159:CDS |
GCTGTGTGCAAAGGATAGAG+TGG | 0.682070 | 1.3:-15451134 | MS.gene93159:CDS |
ATAATGGGCCTGAAAGAGGG+AGG | 0.688306 | 1.3:+15453162 | None:intergenic |
CATCATCCTCACAACCACGA+AGG | 0.690210 | 1.3:+15453319 | None:intergenic |
TCTCAGACAAAAGACCTGGA+CGG | 0.708969 | 1.3:+15453505 | None:intergenic |
AAAGCACCAGAAACCTCTCG+AGG | 0.723344 | 1.3:-15450902 | MS.gene93159:CDS |
AGATGCATATGGAAACCCTG+TGG | 0.774336 | 1.3:-15451005 | MS.gene93159:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATGAATTAAAAATTGATA+AGG | + | chr1.3:15454886-15454905 | None:intergenic | 10.0% |
!! | TTGTTTACTTAATTAAAATA+TGG | - | chr1.3:15452111-15452130 | MS.gene93159:CDS | 10.0% |
!! | AAATTAATTGACAAAATTTG+AGG | - | chr1.3:15454209-15454228 | MS.gene93159:intron | 15.0% |
!! | AGTAACTATAAAATAAAGAA+TGG | + | chr1.3:15453460-15453479 | None:intergenic | 15.0% |
!! | ATTAAATAAACTAATGATGA+TGG | + | chr1.3:15451835-15451854 | None:intergenic | 15.0% |
!! | TAGACCAAAAAAAAAAAAAA+AGG | - | chr1.3:15451535-15451554 | MS.gene93159:intron | 15.0% |
!!! | AATTATTGACTTTATTGAAA+AGG | - | chr1.3:15452316-15452335 | MS.gene93159:intron | 15.0% |
!!! | AGAATTAATTAGTTATTTTG+AGG | + | chr1.3:15451420-15451439 | None:intergenic | 15.0% |
!!! | ATTAATTCTAACATTTTTCA+TGG | - | chr1.3:15451431-15451450 | MS.gene93159:intron | 15.0% |
!!! | ATTAGTTTATTTAATTTCCA+TGG | - | chr1.3:15451840-15451859 | MS.gene93159:intron | 15.0% |
!!! | TTGTTTTCAAATTTTTCTAT+AGG | + | chr1.3:15453713-15453732 | None:intergenic | 15.0% |
!!! | TTTACAGTAATATTTTGAAT+TGG | - | chr1.3:15453504-15453523 | MS.gene93159:CDS | 15.0% |
!!! | TTTTTTTTTTTGTCAAAACA+AGG | + | chr1.3:15451178-15451197 | None:intergenic | 15.0% |
!! | AAGTTAAATTCAATGATGTT+AGG | + | chr1.3:15451583-15451602 | None:intergenic | 20.0% |
!! | AATTTCTTTATTCCTTCATT+TGG | + | chr1.3:15453632-15453651 | None:intergenic | 20.0% |
!! | AGGTTCAAAATGTATTAATT+TGG | + | chr1.3:15454609-15454628 | None:intergenic | 20.0% |
!! | GAAAGAACAAAAATAAGAAT+TGG | + | chr1.3:15452465-15452484 | None:intergenic | 20.0% |
!! | GTTAAATTAAAAGCAAACAA+AGG | + | chr1.3:15453841-15453860 | None:intergenic | 20.0% |
!! | TAGGGACTATAATTAATTAA+TGG | - | chr1.3:15455038-15455057 | MS.gene93159:CDS | 20.0% |
!!! | ATAAATAACAGTATGACTTT+TGG | - | chr1.3:15451017-15451036 | MS.gene93159:CDS | 20.0% |
!!! | CATCATTGAATTTAACTTAT+TGG | - | chr1.3:15451585-15451604 | MS.gene93159:intron | 20.0% |
!!! | GACATGCTTTTAATAATATA+TGG | - | chr1.3:15452370-15452389 | MS.gene93159:intron | 20.0% |
!!! | GCATTTAATTTTATGTTTTG+TGG | + | chr1.3:15451132-15451151 | None:intergenic | 20.0% |
!!! | TAATTTTATTAGTTTTCGAC+AGG | - | chr1.3:15454934-15454953 | MS.gene93159:intron | 20.0% |
!!! | TGCACCTTTTTTTTTTTTTT+TGG | + | chr1.3:15451542-15451561 | None:intergenic | 20.0% |
!!! | TTAAATATTTTGCAGATCAT+TGG | + | chr1.3:15450965-15450984 | None:intergenic | 20.0% |
!!! | TTTTTTTCCTTCATATTTTG+AGG | + | chr1.3:15454812-15454831 | None:intergenic | 20.0% |
! | AAAACCTAAAAACAAGATGA+GGG | - | chr1.3:15453735-15453754 | MS.gene93159:intron | 25.0% |
! | AAATTCAATGATGTTAGGTT+AGG | + | chr1.3:15451578-15451597 | None:intergenic | 25.0% |
! | AACAGACTCTAAATATCAAT+TGG | - | chr1.3:15452690-15452709 | MS.gene93159:intron | 25.0% |
! | AACCATTACTAAAATAGACA+AGG | - | chr1.3:15454429-15454448 | MS.gene93159:CDS | 25.0% |
! | AATACGTTCTATTTCGATAA+TGG | + | chr1.3:15453264-15453283 | None:intergenic | 25.0% |
! | ATAATAATATGCATGATAGC+TGG | + | chr1.3:15455112-15455131 | None:intergenic | 25.0% |
! | ATACGTTCTATTTCGATAAT+GGG | + | chr1.3:15453263-15453282 | None:intergenic | 25.0% |
! | ATAGAACGTATTGAAGAAAA+AGG | - | chr1.3:15453272-15453291 | MS.gene93159:CDS | 25.0% |
! | CTAGTTGTGAACATTTAAAT+AGG | - | chr1.3:15452767-15452786 | MS.gene93159:intron | 25.0% |
! | TGTTCTTGTAAAAAGACTAA+GGG | - | chr1.3:15453660-15453679 | MS.gene93159:intron | 25.0% |
! | TTCTTTAGTCCTAGTAAATT+AGG | - | chr1.3:15451784-15451803 | MS.gene93159:intron | 25.0% |
! | TTGTTCTTGTAAAAAGACTA+AGG | - | chr1.3:15453659-15453678 | MS.gene93159:intron | 25.0% |
! | TTGTTGCATATGCAAATATT+GGG | - | chr1.3:15452141-15452160 | MS.gene93159:intron | 25.0% |
! | TTTGTTGCATATGCAAATAT+TGG | - | chr1.3:15452140-15452159 | MS.gene93159:intron | 25.0% |
!! | ATGTTTGAAGTATGTAGTAA+GGG | - | chr1.3:15454151-15454170 | MS.gene93159:intron | 25.0% |
!! | TAAACTATCGTGATTTTGTA+GGG | - | chr1.3:15455020-15455039 | MS.gene93159:intron | 25.0% |
!! | TAGACAGTCATGATTTTATA+AGG | + | chr1.3:15454855-15454874 | None:intergenic | 25.0% |
!! | TATGTTTGAAGTATGTAGTA+AGG | - | chr1.3:15454150-15454169 | MS.gene93159:intron | 25.0% |
!! | TTAAACTATCGTGATTTTGT+AGG | - | chr1.3:15455019-15455038 | MS.gene93159:intron | 25.0% |
!! | TTGATATTTAGAGTCTGTTT+AGG | + | chr1.3:15452689-15452708 | None:intergenic | 25.0% |
!! | TTTTGCAATTAAAACGGAAA+AGG | - | chr1.3:15453758-15453777 | MS.gene93159:intron | 25.0% |
!!! | ATCCTTGTCTATTTTAGTAA+TGG | + | chr1.3:15454434-15454453 | None:intergenic | 25.0% |
!!! | CTCGTTTATTGTTTTTAAGA+AGG | - | chr1.3:15453687-15453706 | MS.gene93159:intron | 25.0% |
!!! | CTTCATATTTTGAGGTTATA+GGG | + | chr1.3:15454804-15454823 | None:intergenic | 25.0% |
!!! | GGTAAAAGTTTTATAGACTA+AGG | - | chr1.3:15454996-15455015 | MS.gene93159:intron | 25.0% |
!!! | GTCTGAATTTTCTGAAAAAT+AGG | - | chr1.3:15453568-15453587 | MS.gene93159:CDS | 25.0% |
!!! | TAAGTTGATGTAATATCGAA+TGG | - | chr1.3:15451877-15451896 | MS.gene93159:intron | 25.0% |
AAAGCTTACATATCTTCTGA+TGG | - | chr1.3:15451997-15452016 | MS.gene93159:intron | 30.0% | |
AACAAGCATTCTATTTCAAG+AGG | + | chr1.3:15450935-15450954 | None:intergenic | 30.0% | |
AACTATGAACACTATCAGTA+AGG | + | chr1.3:15452618-15452637 | None:intergenic | 30.0% | |
AAGAACACATATGAAGCTAT+GGG | + | chr1.3:15454513-15454532 | None:intergenic | 30.0% | |
AATCATGCTACCATATACTT+AGG | + | chr1.3:15452440-15452459 | None:intergenic | 30.0% | |
AATGTTTGGCCTAATTTACT+AGG | + | chr1.3:15451796-15451815 | None:intergenic | 30.0% | |
ACTATGAACACTATCAGTAA+GGG | + | chr1.3:15452617-15452636 | None:intergenic | 30.0% | |
AGTAAATTAGGCCAAACATT+AGG | - | chr1.3:15451796-15451815 | MS.gene93159:intron | 30.0% | |
ATATCTTACAGGACTATAGA+TGG | - | chr1.3:15454975-15454994 | MS.gene93159:intron | 30.0% | |
ATCAGAAGATATGTAAGCTT+TGG | + | chr1.3:15451998-15452017 | None:intergenic | 30.0% | |
ATGAACAGTATTTCATGTCA+CGG | - | chr1.3:15452262-15452281 | MS.gene93159:intron | 30.0% | |
ATTTAGCAATTCACTGAAAG+TGG | + | chr1.3:15451752-15451771 | None:intergenic | 30.0% | |
CAAAACCTAAAAACAAGATG+AGG | - | chr1.3:15453734-15453753 | MS.gene93159:intron | 30.0% | |
CAGAATTTATAAACACAGCT+AGG | - | chr1.3:15452568-15452587 | MS.gene93159:intron | 30.0% | |
CCTATAACCTCAAAATATGA+AGG | - | chr1.3:15454802-15454821 | MS.gene93159:intron | 30.0% | |
CCTGTAAGATATAAAAACTG+TGG | + | chr1.3:15454967-15454986 | None:intergenic | 30.0% | |
CTTTGGTTATTATGAAGTCA+AGG | + | chr1.3:15451981-15452000 | None:intergenic | 30.0% | |
GATTTGAATGATATTACGTG+TGG | + | chr1.3:15454782-15454801 | None:intergenic | 30.0% | |
GGAAAAGAAACCTAAGTATA+TGG | - | chr1.3:15452427-15452446 | MS.gene93159:intron | 30.0% | |
GTTGTTCTCATAAACTATCT+TGG | + | chr1.3:15454037-15454056 | None:intergenic | 30.0% | |
GTTTATTTGAGCTTATCTAC+TGG | - | chr1.3:15453921-15453940 | MS.gene93159:intron | 30.0% | |
TAGGAAACAAAAATATTGCG+AGG | - | chr1.3:15453587-15453606 | MS.gene93159:CDS | 30.0% | |
TAGTGACTTAATGTTTCTCT+TGG | - | chr1.3:15454478-15454497 | MS.gene93159:CDS | 30.0% | |
TATCTGAAAAAGTTAACCGT+AGG | + | chr1.3:15451644-15451663 | None:intergenic | 30.0% | |
TATTTCAAGAGGAGTTAACA+GGG | + | chr1.3:15450924-15450943 | None:intergenic | 30.0% | |
TGAACATTTAAATAGGCTCT+AGG | - | chr1.3:15452774-15452793 | MS.gene93159:intron | 30.0% | |
TGTAATGCACTTACAATCTT+TGG | - | chr1.3:15452544-15452563 | MS.gene93159:intron | 30.0% | |
TGTTCAAGGTCAAAACATTA+GGG | + | chr1.3:15453815-15453834 | None:intergenic | 30.0% | |
TTGTTGATGTGGTAATTCTT+AGG | - | chr1.3:15454264-15454283 | MS.gene93159:intron | 30.0% | |
! | ATAGCTACTCTAGTTTGAAT+TGG | - | chr1.3:15453899-15453918 | MS.gene93159:intron | 30.0% |
! | ATTAAGTTGTTTATCCCAAC+AGG | - | chr1.3:15454118-15454137 | MS.gene93159:CDS | 30.0% |
! | CCACAGTTTTTATATCTTAC+AGG | - | chr1.3:15454964-15454983 | MS.gene93159:intron | 30.0% |
! | GTCAAAACATTAGGGTTTTA+TGG | + | chr1.3:15453807-15453826 | None:intergenic | 30.0% |
! | TAATTTCCATGGTTTTCTCA+TGG | - | chr1.3:15451851-15451870 | MS.gene93159:intron | 30.0% |
! | TGAGGGTTTTGCAATTAAAA+CGG | - | chr1.3:15453752-15453771 | MS.gene93159:intron | 30.0% |
! | TTAAGTTGTTTATCCCAACA+GGG | - | chr1.3:15454119-15454138 | MS.gene93159:CDS | 30.0% |
! | TTCACAACTAGTTGATACAA+GGG | + | chr1.3:15452758-15452777 | None:intergenic | 30.0% |
! | TTTGAGGTAGAATGACAAAA+TGG | - | chr1.3:15454225-15454244 | MS.gene93159:intron | 30.0% |
!! | AGTAGGCTTTATCTTTGTTT+TGG | - | chr1.3:15452406-15452425 | MS.gene93159:intron | 30.0% |
!!! | AAAACCCTCATCTTGTTTTT+AGG | + | chr1.3:15453742-15453761 | None:intergenic | 30.0% |
!!! | CCTTCATATTTTGAGGTTAT+AGG | + | chr1.3:15454805-15454824 | None:intergenic | 30.0% |
AAAACTAGTCCTGTGTTACA+AGG | - | chr1.3:15451210-15451229 | MS.gene93159:intron | 35.0% | |
AACATAGTATTAGTCCCTGT+TGG | + | chr1.3:15454136-15454155 | None:intergenic | 35.0% | |
AAGGGAATTTCTACTGTGTT+TGG | + | chr1.3:15452599-15452618 | None:intergenic | 35.0% | |
AAGTGCATTACACACTCAAA+AGG | + | chr1.3:15452536-15452555 | None:intergenic | 35.0% | |
AATAGACAAGGATGAACTTC+TGG | - | chr1.3:15454441-15454460 | MS.gene93159:CDS | 35.0% | |
AATGGTACGGTATACATACA+TGG | - | chr1.3:15454654-15454673 | MS.gene93159:intron | 35.0% | |
ACATAGTATTAGTCCCTGTT+GGG | + | chr1.3:15454135-15454154 | None:intergenic | 35.0% | |
ACATATCTTCTGATGGTAGT+TGG | - | chr1.3:15452004-15452023 | MS.gene93159:intron | 35.0% | |
AGAACACATATGAAGCTATG+GGG | + | chr1.3:15454512-15454531 | None:intergenic | 35.0% | |
AGCATGTCAGATAAAAATCG+AGG | + | chr1.3:15452358-15452377 | None:intergenic | 35.0% | |
AGTGCATTACACACTCAAAA+GGG | + | chr1.3:15452535-15452554 | None:intergenic | 35.0% | |
ATTTAGTCCTTTCTCTCCTA+TGG | + | chr1.3:15455368-15455387 | None:intergenic | 35.0% | |
CAAGTGACTTAAAATTCCAG+TGG | + | chr1.3:15451498-15451517 | None:intergenic | 35.0% | |
CAATGATGTTCATATCCACA+GGG | + | chr1.3:15455420-15455439 | None:intergenic | 35.0% | |
CTAGAGTAAGCTTCTTCTTT+GGG | - | chr1.3:15455533-15455552 | MS.gene93159:CDS | 35.0% | |
CTATTTCAAGAGGAGTTAAC+AGG | + | chr1.3:15450925-15450944 | None:intergenic | 35.0% | |
GAAGAACACATATGAAGCTA+TGG | + | chr1.3:15454514-15454533 | None:intergenic | 35.0% | |
GCAAATCAAGACTCAAAATG+AGG | + | chr1.3:15451457-15451476 | None:intergenic | 35.0% | |
GTGTTCAAGGTCAAAACATT+AGG | + | chr1.3:15453816-15453835 | None:intergenic | 35.0% | |
TAGCACTTGTGAAACTGTTT+GGG | - | chr1.3:15453947-15453966 | MS.gene93159:intron | 35.0% | |
TATCAGCAAACAACATTTGG+TGG | + | chr1.3:15453175-15453194 | None:intergenic | 35.0% | |
TATTCAAAGAAGAGTAAGCG+AGG | - | chr1.3:15454369-15454388 | MS.gene93159:intron | 35.0% | |
TCAATGATGTTCATATCCAC+AGG | + | chr1.3:15455421-15455440 | None:intergenic | 35.0% | |
TCACTGAAAGTGGTTATAAC+AGG | + | chr1.3:15451742-15451761 | None:intergenic | 35.0% | |
TCGAGCATAAATATGACTGA+TGG | + | chr1.3:15455089-15455108 | None:intergenic | 35.0% | |
TCTCATAAACTATCTTGGAG+AGG | + | chr1.3:15454032-15454051 | None:intergenic | 35.0% | |
TGTAGACTAAGTTGTTGATG+TGG | - | chr1.3:15454253-15454272 | MS.gene93159:intron | 35.0% | |
TTAAACTCCTTGTGGAATTG+AGG | - | chr1.3:15451270-15451289 | MS.gene93159:intron | 35.0% | |
TTAGCACTTGTGAAACTGTT+TGG | - | chr1.3:15453946-15453965 | MS.gene93159:intron | 35.0% | |
TTAGTGTGAGATGCAAAGAT+CGG | - | chr1.3:15453306-15453325 | MS.gene93159:CDS | 35.0% | |
TTATCTCCATGAGAAAACCA+TGG | + | chr1.3:15451860-15451879 | None:intergenic | 35.0% | |
TTCTATGTGAGAGATGCATA+TGG | - | chr1.3:15455391-15455410 | MS.gene93159:intron | 35.0% | |
TTGTTTACAAACTACACCCA+AGG | + | chr1.3:15453545-15453564 | None:intergenic | 35.0% | |
TTTAACCTATGACACCACTA+GGG | + | chr1.3:15451255-15451274 | None:intergenic | 35.0% | |
TTTAAGTCACTTGTATCCTG+TGG | - | chr1.3:15451505-15451524 | MS.gene93159:intron | 35.0% | |
TTTGGTCTACAAAAAACCAC+AGG | + | chr1.3:15451524-15451543 | None:intergenic | 35.0% | |
! | ACCAAATGTTGTTTGCTGAT+AGG | - | chr1.3:15453174-15453193 | MS.gene93159:CDS | 35.0% |
! | ATGGTAGCAATGCTTTTAGT+AGG | - | chr1.3:15452389-15452408 | MS.gene93159:intron | 35.0% |
! | CCAAATGTTGTTTGCTGATA+GGG | - | chr1.3:15453175-15453194 | MS.gene93159:CDS | 35.0% |
! | GTTCACAACTAGTTGATACA+AGG | + | chr1.3:15452759-15452778 | None:intergenic | 35.0% |
! | TTCTGATGGTAGTTGGTTTA+TGG | - | chr1.3:15452011-15452030 | MS.gene93159:intron | 35.0% |
! | TTTGAAGTATGTAGTAAGGG+AGG | - | chr1.3:15454154-15454173 | MS.gene93159:intron | 35.0% |
!! | AGTCTTGATTTGCTATCTGA+AGG | - | chr1.3:15451464-15451483 | MS.gene93159:intron | 35.0% |
!! | ATTCTTAGGAGTACTTCATC+AGG | - | chr1.3:15454278-15454297 | MS.gene93159:intron | 35.0% |
!! | ATTGATAGCGTCAATAAACC+GGG | - | chr1.3:15451922-15451941 | MS.gene93159:intron | 35.0% |
!! | CACATTTTCAAGATTGCCTA+CGG | - | chr1.3:15451625-15451644 | MS.gene93159:intron | 35.0% |
!! | GATTGATAGCGTCAATAAAC+CGG | - | chr1.3:15451921-15451940 | MS.gene93159:intron | 35.0% |
!! | TTGTTTTGTTGCGAATGGTA+CGG | - | chr1.3:15454641-15454660 | MS.gene93159:intron | 35.0% |
!!! | GAGGAATTTTTTAGTTCAGC+TGG | - | chr1.3:15453606-15453625 | MS.gene93159:CDS | 35.0% |
AACTTGAACCAGCAATGCAT+TGG | - | chr1.3:15452058-15452077 | MS.gene93159:CDS | 40.0% | |
AATAGCAGGTAGATACTAGC+AGG | + | chr1.3:15452665-15452684 | None:intergenic | 40.0% | |
AATGGCTGTATGATCACCAA+TGG | + | chr1.3:15452865-15452884 | None:intergenic | 40.0% | |
ACAAACTACACCCAAGGATT+TGG | + | chr1.3:15453539-15453558 | None:intergenic | 40.0% | |
ACTAGGATTCTACGAGAGAA+CGG | - | chr1.3:15455313-15455332 | MS.gene93159:intron | 40.0% | |
AGAACGGCTTAACAGTTTGT+AGG | - | chr1.3:15455329-15455348 | MS.gene93159:intron | 40.0% | |
AGCACGAATGTGTATGTTGT+AGG | + | chr1.3:15452185-15452204 | None:intergenic | 40.0% | |
ATGCATACCTGTGAAGCATA+TGG | + | chr1.3:15453413-15453432 | None:intergenic | 40.0% | |
ATGGTCAGATACAATCTGAG+TGG | + | chr1.3:15454689-15454708 | None:intergenic | 40.0% | |
ATGTGATTGCAGCTGAAGTT+TGG | - | chr1.3:15452955-15452974 | MS.gene93159:intron | 40.0% | |
CAGAAGAAGTTGCTCGTTTA+TGG | - | chr1.3:15451317-15451336 | MS.gene93159:intron | 40.0% | |
CAGCTGCAATCACATTGAAT+TGG | + | chr1.3:15452950-15452969 | None:intergenic | 40.0% | |
CATAAACGAGCAACTTCTTC+TGG | + | chr1.3:15451319-15451338 | None:intergenic | 40.0% | |
CATCGTATCCACCAATGAAT+CGG | - | chr1.3:15454706-15454725 | MS.gene93159:intron | 40.0% | |
CCATATACCTCAATTCCACA+AGG | + | chr1.3:15451280-15451299 | None:intergenic | 40.0% | |
CCATGATTGTACACTGATCA+AGG | - | chr1.3:15451387-15451406 | MS.gene93159:intron | 40.0% | |
CCCTATCAGCAAACAACATT+TGG | + | chr1.3:15453178-15453197 | None:intergenic | 40.0% | |
CCTTGATCAGTGTACAATCA+TGG | + | chr1.3:15451390-15451409 | None:intergenic | 40.0% | |
CCTTGTGGAATTGAGGTATA+TGG | - | chr1.3:15451277-15451296 | MS.gene93159:intron | 40.0% | |
CTGAAGTTTGGACTCATAAC+AGG | - | chr1.3:15452967-15452986 | MS.gene93159:intron | 40.0% | |
GAACGGCTTAACAGTTTGTA+GGG | - | chr1.3:15455330-15455349 | MS.gene93159:intron | 40.0% | |
GAATGTGTATGTTGTAGGCA+AGG | + | chr1.3:15452180-15452199 | None:intergenic | 40.0% | |
GACTTAAAATTCCAGTGGCT+AGG | + | chr1.3:15451493-15451512 | None:intergenic | 40.0% | |
GAGTCTGTTTAGGAAATAGC+AGG | + | chr1.3:15452679-15452698 | None:intergenic | 40.0% | |
GATATCTCAGACAAAAGACC+TGG | + | chr1.3:15452909-15452928 | None:intergenic | 40.0% | |
GATATTACGTGTGGAGCATA+AGG | + | chr1.3:15454773-15454792 | None:intergenic | 40.0% | |
GCAAACAAAGGATGTGTTCA+AGG | + | chr1.3:15453829-15453848 | None:intergenic | 40.0% | |
GCTAGAGTAAGCTTCTTCTT+TGG | - | chr1.3:15455532-15455551 | MS.gene93159:CDS | 40.0% | |
GTCAATGATGCAACAAACCA+AGG | - | chr1.3:15453011-15453030 | MS.gene93159:CDS | 40.0% | |
GTCATAGGTTAAACTCCTTG+TGG | - | chr1.3:15451262-15451281 | MS.gene93159:intron | 40.0% | |
GTCTTGTAAGCCAAATCCTT+GGG | - | chr1.3:15453526-15453545 | MS.gene93159:CDS | 40.0% | |
GTGCATTACACACTCAAAAG+GGG | + | chr1.3:15452534-15452553 | None:intergenic | 40.0% | |
GTGGAATTGAGGTATATGGT+GGG | - | chr1.3:15451281-15451300 | MS.gene93159:intron | 40.0% | |
GTTTAACCTATGACACCACT+AGG | + | chr1.3:15451256-15451275 | None:intergenic | 40.0% | |
TAGTGTGAGATGCAAAGATC+GGG | - | chr1.3:15453307-15453326 | MS.gene93159:CDS | 40.0% | |
TCGTACTCAGGATCAAAGTA+TGG | + | chr1.3:15450868-15450887 | None:intergenic | 40.0% | |
TGAAGAAAAAGGCTACTCAG+TGG | - | chr1.3:15453283-15453302 | MS.gene93159:CDS | 40.0% | |
TGACATCTACCTTGTAACAC+AGG | + | chr1.3:15451222-15451241 | None:intergenic | 40.0% | |
TGTGATGGTCAATGTGAAGA+AGG | - | chr1.3:15455468-15455487 | MS.gene93159:intron | 40.0% | |
TGTGGAATTGAGGTATATGG+TGG | - | chr1.3:15451280-15451299 | MS.gene93159:intron | 40.0% | |
TTATGAAGTCAAGGTCTGTC+AGG | + | chr1.3:15451972-15451991 | None:intergenic | 40.0% | |
TTGAATCATCATCCAGACCT+TGG | + | chr1.3:15453031-15453050 | None:intergenic | 40.0% | |
TTGTGAGGATGATGAGAATG+TGG | - | chr1.3:15453097-15453116 | MS.gene93159:CDS | 40.0% | |
! | CAAGGATGAACTTCTGGTTA+TGG | - | chr1.3:15454447-15454466 | MS.gene93159:CDS | 40.0% |
! | CTTCTTCTTTGGGAACTTGT+TGG | - | chr1.3:15455543-15455562 | MS.gene93159:CDS | 40.0% |
! | GAACTTCTGGTTATGGAACT+TGG | - | chr1.3:15454454-15454473 | MS.gene93159:CDS | 40.0% |
! | GATGGTAGTTGGTTTATGGA+TGG | - | chr1.3:15452015-15452034 | MS.gene93159:intron | 40.0% |
!! | AAATAGGCTCTAGGACCAAA+GGG | - | chr1.3:15452783-15452802 | MS.gene93159:intron | 40.0% |
!! | ACTAATGATGATGGCCACTT+TGG | + | chr1.3:15451826-15451845 | None:intergenic | 40.0% |
!! | CTAATGATGATGGCCACTTT+GGG | + | chr1.3:15451825-15451844 | None:intergenic | 40.0% |
!! | GAAGCACTGCGTAAAGAAAT+TGG | - | chr1.3:15455439-15455458 | MS.gene93159:intron | 40.0% |
!! | TAAATAGGCTCTAGGACCAA+AGG | - | chr1.3:15452782-15452801 | MS.gene93159:intron | 40.0% |
!! | TCTTTGGGAACTTGTTGGAA+AGG | - | chr1.3:15455548-15455567 | MS.gene93159:CDS | 40.0% |
!!! | TCTGCTTGTTTTGTTGCGAA+TGG | - | chr1.3:15454636-15454655 | MS.gene93159:intron | 40.0% |
AAACATTAGGCTGCCCAAAG+TGG | - | chr1.3:15451809-15451828 | MS.gene93159:intron | 45.0% | |
AAACTCTGTTTCCACTTCGC+AGG | - | chr1.3:15451341-15451360 | MS.gene93159:intron | 45.0% | |
AACTCTGTTTCCACTTCGCA+GGG | - | chr1.3:15451342-15451361 | MS.gene93159:intron | 45.0% | |
ACACTGAAGGGGAGAAAGAA+AGG | - | chr1.3:15454323-15454342 | MS.gene93159:intron | 45.0% | |
ACTTTGGGCAGCCTAATGTT+TGG | + | chr1.3:15451810-15451829 | None:intergenic | 45.0% | |
AGAAATTGGCCAGACTGTGA+TGG | - | chr1.3:15455453-15455472 | MS.gene93159:intron | 45.0% | |
AGATGCATATGGAAACCCTG+TGG | - | chr1.3:15455402-15455421 | MS.gene93159:intron | 45.0% | |
AGTATACGCCAATGCATTGC+TGG | + | chr1.3:15452069-15452088 | None:intergenic | 45.0% | |
AGTTAACAGGGAACCTTGGA+GGG | + | chr1.3:15450912-15450931 | None:intergenic | 45.0% | |
ATATGGCCCTTCAGATGAGA+TGG | + | chr1.3:15453396-15453415 | None:intergenic | 45.0% | |
ATCCACCAATGAATCGGTGA+CGG | - | chr1.3:15454712-15454731 | MS.gene93159:intron | 45.0% | |
ATGCACACTTGACACTGAAG+GGG | - | chr1.3:15454312-15454331 | MS.gene93159:intron | 45.0% | |
ATGCCTCCATCTCATCTGAA+GGG | - | chr1.3:15453387-15453406 | MS.gene93159:CDS | 45.0% | |
CAAAACAAGCAGATAGCTGC+AGG | + | chr1.3:15454629-15454648 | None:intergenic | 45.0% | |
CAATAAACCGGGAATTCTGC+TGG | - | chr1.3:15451933-15451952 | MS.gene93159:intron | 45.0% | |
CACTGAAGGGGAGAAAGAAA+GGG | - | chr1.3:15454324-15454343 | MS.gene93159:intron | 45.0% | |
CATACAGCCATTGAGCTCAT+TGG | - | chr1.3:15452873-15452892 | MS.gene93159:intron | 45.0% | |
CTGTGTGCAAAGGATAGAGT+GGG | - | chr1.3:15455274-15455293 | MS.gene93159:intron | 45.0% | |
GATGCACACTTGACACTGAA+GGG | - | chr1.3:15454311-15454330 | MS.gene93159:intron | 45.0% | |
GTCATCAGTTCAATCCCTAG+TGG | - | chr1.3:15451238-15451257 | MS.gene93159:intron | 45.0% | |
GTCGTTACCATTGATCCTCT+GGG | - | chr1.3:15455224-15455243 | MS.gene93159:intron | 45.0% | |
GTGTCAACCATAGGAGAGAA+AGG | - | chr1.3:15455358-15455377 | MS.gene93159:intron | 45.0% | |
TACACACTCAAAAGGGGAGA+CGG | + | chr1.3:15452528-15452547 | None:intergenic | 45.0% | |
TAGTTCAGCTGGCCAAATGA+AGG | - | chr1.3:15453617-15453636 | MS.gene93159:CDS | 45.0% | |
TATCCTTTGCACACAGCTCA+AGG | + | chr1.3:15455270-15455289 | None:intergenic | 45.0% | |
TCACATTGACCATCACAGTC+TGG | + | chr1.3:15455465-15455484 | None:intergenic | 45.0% | |
TCTCAGACAAAAGACCTGGA+CGG | + | chr1.3:15452905-15452924 | None:intergenic | 45.0% | |
TGAAGAGTTGGGAAGGCAAA+CGG | - | chr1.3:15452826-15452845 | MS.gene93159:intron | 45.0% | |
TGATGCAACAAACCAAGGTC+TGG | - | chr1.3:15453016-15453035 | MS.gene93159:CDS | 45.0% | |
TGTCGTTACCATTGATCCTC+TGG | - | chr1.3:15455223-15455242 | MS.gene93159:intron | 45.0% | |
TGTCTGCACTCTTACTGACA+TGG | - | chr1.3:15453349-15453368 | MS.gene93159:CDS | 45.0% | |
TGTTGTAGGCAAGGTTTGCA+TGG | + | chr1.3:15452171-15452190 | None:intergenic | 45.0% | |
TTGATTCTCCTCCCTCTTTC+AGG | - | chr1.3:15453237-15453256 | MS.gene93159:CDS | 45.0% | |
TTGCTGAAGTTCTCGTACTC+AGG | + | chr1.3:15450880-15450899 | None:intergenic | 45.0% | |
TTTCATGTCACGGATCAGCA+AGG | - | chr1.3:15452272-15452291 | MS.gene93159:intron | 45.0% | |
! | AATGAATCGGTGACGGTTGA+TGG | - | chr1.3:15454719-15454738 | MS.gene93159:intron | 45.0% |
! | CGATTCATTGGTGGATACGA+TGG | + | chr1.3:15454708-15454727 | None:intergenic | 45.0% |
! | GATAGGGATTATGAGAGTGC+TGG | - | chr1.3:15453191-15453210 | MS.gene93159:CDS | 45.0% |
! | GGTCTTGTAAGCCAAATCCT+TGG | - | chr1.3:15453525-15453544 | MS.gene93159:CDS | 45.0% |
!! | ATCAACCGTCACCGATTCAT+TGG | + | chr1.3:15454720-15454739 | None:intergenic | 45.0% |
!! | TCAATCCCTAGTGGTGTCAT+AGG | - | chr1.3:15451247-15451266 | MS.gene93159:intron | 45.0% |
!! | TCGATAATGGGCCTGAAAGA+GGG | + | chr1.3:15453251-15453270 | None:intergenic | 45.0% |
!! | TTCGATAATGGGCCTGAAAG+AGG | + | chr1.3:15453252-15453271 | None:intergenic | 45.0% |
!!! | ATTAACTATAATTTTTAATA+TGG | + | chr1.3:15452226-15452245 | None:intergenic | 5.0% |
AACCCATGGAGAAACTGGTC+CGG | + | chr1.3:15453124-15453143 | None:intergenic | 50.0% | |
AAGCTCAACCACATCCTTCG+TGG | - | chr1.3:15453074-15453093 | MS.gene93159:CDS | 50.0% | |
ACACACTCAAAAGGGGAGAC+GGG | + | chr1.3:15452527-15452546 | None:intergenic | 50.0% | |
ACCAGAAACCTCTCGAGGAT+GGG | - | chr1.3:15455510-15455529 | MS.gene93159:intron | 50.0% | |
ACCATTGATCCTCTGGGTGA+TGG | - | chr1.3:15455230-15455249 | MS.gene93159:intron | 50.0% | |
ACGACTTCCAGCAGAATTCC+CGG | + | chr1.3:15451943-15451962 | None:intergenic | 50.0% | |
AGCCATTGAGCTCATTGGTC+GGG | - | chr1.3:15452878-15452897 | MS.gene93159:intron | 50.0% | |
AGGATGATGAGAATGTGGCC+CGG | - | chr1.3:15453102-15453121 | MS.gene93159:CDS | 50.0% | |
CAGCCATTGAGCTCATTGGT+CGG | - | chr1.3:15452877-15452896 | MS.gene93159:intron | 50.0% | |
CATCATCCTCACAACCACGA+AGG | + | chr1.3:15453091-15453110 | None:intergenic | 50.0% | |
CATGCCTCCATCTCATCTGA+AGG | - | chr1.3:15453386-15453405 | MS.gene93159:CDS | 50.0% | |
CATTGAATTGGAAGCTCGCC+AGG | + | chr1.3:15452938-15452957 | None:intergenic | 50.0% | |
CCCAACTCTTCACACCTTCT+GGG | + | chr1.3:15452818-15452837 | None:intergenic | 50.0% | |
GAAGAGTTGGGAAGGCAAAC+GGG | - | chr1.3:15452827-15452846 | MS.gene93159:intron | 50.0% | |
GAGGAGTTAACAGGGAACCT+TGG | + | chr1.3:15450916-15450935 | None:intergenic | 50.0% | |
GAGTTAACAGGGAACCTTGG+AGG | + | chr1.3:15450913-15450932 | None:intergenic | 50.0% | |
GCAACAGAATCAACCCTCCA+AGG | - | chr1.3:15450896-15450915 | MS.gene93159:CDS | 50.0% | |
GCTGTGTGCAAAGGATAGAG+TGG | - | chr1.3:15455273-15455292 | MS.gene93159:intron | 50.0% | |
GGATGCACACTTGACACTGA+AGG | - | chr1.3:15454310-15454329 | MS.gene93159:intron | 50.0% | |
GGCTTAACAGTTTGTAGGGC+AGG | - | chr1.3:15455334-15455353 | MS.gene93159:intron | 50.0% | |
GGTGAAACCCATGGAGAAAC+TGG | + | chr1.3:15453129-15453148 | None:intergenic | 50.0% | |
TACTTCATCAGGCACGTGGA+TGG | - | chr1.3:15454289-15454308 | MS.gene93159:intron | 50.0% | |
TCCATCACCCAGAGGATCAA+TGG | + | chr1.3:15455234-15455253 | None:intergenic | 50.0% | |
TCCCAACTCTTCACACCTTC+TGG | + | chr1.3:15452819-15452838 | None:intergenic | 50.0% | |
TCTGAAGGAAACCTAGCCAC+TGG | - | chr1.3:15451479-15451498 | MS.gene93159:intron | 50.0% | |
TGAAGGGCCATATGCTTCAC+AGG | - | chr1.3:15453403-15453422 | MS.gene93159:CDS | 50.0% | |
! | AAAGCACCAGAAACCTCTCG+AGG | - | chr1.3:15455505-15455524 | MS.gene93159:intron | 50.0% |
! | CCCAGAAGGTGTGAAGAGTT+GGG | - | chr1.3:15452815-15452834 | MS.gene93159:intron | 50.0% |
! | GAAGGTGTGAAGAGTTGGGA+AGG | - | chr1.3:15452819-15452838 | MS.gene93159:intron | 50.0% |
! | GTCTGAGATATCAGCTGTCC+TGG | - | chr1.3:15452917-15452936 | MS.gene93159:intron | 50.0% |
!! | AACCGTCACCGATTCATTGG+TGG | + | chr1.3:15454717-15454736 | None:intergenic | 50.0% |
!! | AGGGATTATGAGAGTGCTGG+TGG | - | chr1.3:15453194-15453213 | MS.gene93159:CDS | 50.0% |
!! | ATAATGGGCCTGAAAGAGGG+AGG | + | chr1.3:15453248-15453267 | None:intergenic | 50.0% |
!! | GCTTGCTGTCTGAAGTGACT+AGG | - | chr1.3:15455296-15455315 | MS.gene93159:intron | 50.0% |
!! | GGTTTCTGGTGCTTTGGTGT+TGG | + | chr1.3:15455500-15455519 | None:intergenic | 50.0% |
!! | TCGAGAGGTTTCTGGTGCTT+TGG | + | chr1.3:15455506-15455525 | None:intergenic | 50.0% |
ACCCATGGAGAAACTGGTCC+GGG | + | chr1.3:15453123-15453142 | None:intergenic | 55.0% | |
AGACGGGCGTAGTGCTTAAC+TGG | + | chr1.3:15452511-15452530 | None:intergenic | 55.0% | |
AGGGCAGGTGTGTCAACCAT+AGG | - | chr1.3:15455349-15455368 | MS.gene93159:intron | 55.0% | |
AGTTGGGAAGGCAAACGGGT+TGG | - | chr1.3:15452831-15452850 | MS.gene93159:intron | 55.0% | |
CACCAGAAACCTCTCGAGGA+TGG | - | chr1.3:15455509-15455528 | MS.gene93159:intron | 55.0% | |
CCACATCCTTCGTGGTTGTG+AGG | - | chr1.3:15453082-15453101 | MS.gene93159:CDS | 55.0% | |
CCTCACAACCACGAAGGATG+TGG | + | chr1.3:15453085-15453104 | None:intergenic | 55.0% | |
CCTTCACCCACATGGACAGA+AGG | - | chr1.3:15453147-15453166 | MS.gene93159:CDS | 55.0% | |
CCTTCTGTCCATGTGGGTGA+AGG | + | chr1.3:15453150-15453169 | None:intergenic | 55.0% | |
GAGCCTTGAGCTGTGTGCAA+AGG | - | chr1.3:15455264-15455283 | MS.gene93159:intron | 55.0% | |
GGGTTTCACCTTCACCCACA+TGG | - | chr1.3:15453139-15453158 | MS.gene93159:CDS | 55.0% | |
GTCCCGACCAATGAGCTCAA+TGG | + | chr1.3:15452883-15452902 | None:intergenic | 55.0% | |
GTGGAGCCTTCTGTCCATGT+GGG | + | chr1.3:15453156-15453175 | None:intergenic | 55.0% | |
GTGGGTGAAGGTGAAACCCA+TGG | + | chr1.3:15453138-15453157 | None:intergenic | 55.0% | |
TACTCTAGCCCATCCTCGAG+AGG | + | chr1.3:15455521-15455540 | None:intergenic | 55.0% | |
TCACACCTTCTGGGCTCTTG+CGG | + | chr1.3:15452809-15452828 | None:intergenic | 55.0% | |
TCCACTTCGCAGGGTCTCTA+TGG | - | chr1.3:15451351-15451370 | MS.gene93159:intron | 55.0% | |
TCCATAGAGACCCTGCGAAG+TGG | + | chr1.3:15451355-15451374 | None:intergenic | 55.0% | |
TGGCCCTTCAGATGAGATGG+AGG | + | chr1.3:15453393-15453412 | None:intergenic | 55.0% | |
! | GCCCAGAAGGTGTGAAGAGT+TGG | - | chr1.3:15452814-15452833 | MS.gene93159:intron | 55.0% |
! | GGAGTACTTCATCAGGCACG+TGG | - | chr1.3:15454285-15454304 | MS.gene93159:intron | 55.0% |
!! | ATCCTCTGGGTGATGGACAC+AGG | - | chr1.3:15455237-15455256 | MS.gene93159:intron | 55.0% |
!! | CGGGTTGGCATTCACTCCAT+TGG | - | chr1.3:15452846-15452865 | MS.gene93159:intron | 55.0% |
!! | TCCTCTGGGTGATGGACACA+GGG | - | chr1.3:15455238-15455257 | MS.gene93159:intron | 55.0% |
!! | TCTGGTGCTTTGGTGTTGGC+TGG | + | chr1.3:15455496-15455515 | None:intergenic | 55.0% |
ACCCTGTGTCCATCACCCAG+AGG | + | chr1.3:15455242-15455261 | None:intergenic | 60.0% | |
GCCCATCCTCGAGAGGTTTC+TGG | + | chr1.3:15455514-15455533 | None:intergenic | 60.0% | |
GCCCGGACCAGTTTCTCCAT+GGG | - | chr1.3:15453119-15453138 | MS.gene93159:CDS | 60.0% | |
GGTGGAGCCTTCTGTCCATG+TGG | + | chr1.3:15453157-15453176 | None:intergenic | 60.0% | |
AAGGGCCGCAAGAGCCCAGA+AGG | - | chr1.3:15452801-15452820 | MS.gene93159:intron | 65.0% | |
CTCATTGGTCGGGACCGTCC+AGG | - | chr1.3:15452888-15452907 | MS.gene93159:intron | 65.0% | |
GGCCCGGACCAGTTTCTCCA+TGG | - | chr1.3:15453118-15453137 | MS.gene93159:CDS | 65.0% | |
TCTGGGCTCTTGCGGCCCTT+TGG | + | chr1.3:15452801-15452820 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 15450847 | 15455582 | 15450847 | ID=MS.gene93159 |
chr1.3 | mRNA | 15450847 | 15455582 | 15450847 | ID=MS.gene93159.t1;Parent=MS.gene93159 |
chr1.3 | exon | 15455512 | 15455582 | 15455512 | ID=MS.gene93159.t1.exon1;Parent=MS.gene93159.t1 |
chr1.3 | CDS | 15455512 | 15455582 | 15455512 | ID=cds.MS.gene93159.t1;Parent=MS.gene93159.t1 |
chr1.3 | exon | 15455021 | 15455066 | 15455021 | ID=MS.gene93159.t1.exon2;Parent=MS.gene93159.t1 |
chr1.3 | CDS | 15455021 | 15455066 | 15455021 | ID=cds.MS.gene93159.t1;Parent=MS.gene93159.t1 |
chr1.3 | exon | 15454393 | 15454507 | 15454393 | ID=MS.gene93159.t1.exon3;Parent=MS.gene93159.t1 |
chr1.3 | CDS | 15454393 | 15454507 | 15454393 | ID=cds.MS.gene93159.t1;Parent=MS.gene93159.t1 |
chr1.3 | exon | 15454092 | 15454159 | 15454092 | ID=MS.gene93159.t1.exon4;Parent=MS.gene93159.t1 |
chr1.3 | CDS | 15454092 | 15454159 | 15454092 | ID=cds.MS.gene93159.t1;Parent=MS.gene93159.t1 |
chr1.3 | exon | 15453005 | 15453640 | 15453005 | ID=MS.gene93159.t1.exon5;Parent=MS.gene93159.t1 |
chr1.3 | CDS | 15453005 | 15453640 | 15453005 | ID=cds.MS.gene93159.t1;Parent=MS.gene93159.t1 |
chr1.3 | exon | 15452039 | 15452143 | 15452039 | ID=MS.gene93159.t1.exon6;Parent=MS.gene93159.t1 |
chr1.3 | CDS | 15452039 | 15452143 | 15452039 | ID=cds.MS.gene93159.t1;Parent=MS.gene93159.t1 |
chr1.3 | exon | 15450847 | 15451170 | 15450847 | ID=MS.gene93159.t1.exon7;Parent=MS.gene93159.t1 |
chr1.3 | CDS | 15450847 | 15451170 | 15450847 | ID=cds.MS.gene93159.t1;Parent=MS.gene93159.t1 |
Gene Sequence |
Protein sequence |