AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93159


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93159.t1 MTR_1g029520 98.372 430 7 0 25 454 254 683 0.0 876
MS.gene93159.t1 MTR_3g088885 80.617 454 80 6 1 453 1 447 0.0 741
MS.gene93159.t1 MTR_5g047260 53.303 439 185 7 8 446 16 434 2.02e-152 441
MS.gene93159.t1 MTR_7g022470 51.910 445 201 6 9 453 10 441 2.94e-151 437
MS.gene93159.t1 MTR_7g028050 48.539 445 218 6 9 452 1 435 2.73e-140 409
MS.gene93159.t1 MTR_4g101950 46.387 429 190 7 6 426 3 399 2.29e-131 387
MS.gene93159.t1 MTR_5g011580 44.812 453 221 8 6 453 3 431 1.19e-128 380
MS.gene93159.t1 MTR_5g015170 46.667 435 213 8 10 432 10 437 1.22e-128 381
MS.gene93159.t1 MTR_5g047260 52.078 361 157 5 8 368 16 360 1.37e-121 359
MS.gene93159.t1 MTR_4g097380 42.619 420 233 3 7 420 26 443 2.51e-117 352
MS.gene93159.t1 MTR_5g047260 53.074 309 130 4 8 316 16 309 6.41e-104 312
MS.gene93159.t1 MTR_7g028050 48.048 333 167 4 121 452 5 332 1.40e-97 296
MS.gene93159.t1 MTR_1g012740 48.000 100 46 1 283 382 54 147 2.25e-23 96.7
MS.gene93159.t1 MTR_1g012740 35.099 151 69 6 6 150 7 134 2.30e-16 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93159.t1 AT1G76990 69.197 461 125 7 1 453 1 452 0.0 653
MS.gene93159.t1 AT1G76990 69.197 461 125 7 1 453 1 452 0.0 653
MS.gene93159.t1 AT1G76990 69.197 461 125 7 1 453 1 452 0.0 653
MS.gene93159.t1 AT1G76990 69.197 461 125 7 1 453 1 452 0.0 653
MS.gene93159.t1 AT1G76990 69.197 461 125 7 1 453 1 452 0.0 653
MS.gene93159.t1 AT1G69040 52.339 449 189 9 9 450 11 441 7.97e-149 432
MS.gene93159.t1 AT1G69040 52.339 449 189 9 9 450 7 437 8.30e-149 431
MS.gene93159.t1 AT5G25320 49.660 441 194 7 1 414 1 440 9.11e-148 431
MS.gene93159.t1 AT2G03730 49.782 458 206 9 4 451 3 446 1.07e-143 419
MS.gene93159.t1 AT2G03730 49.782 458 206 9 4 451 3 446 1.07e-143 419
MS.gene93159.t1 AT3G01990 50.246 406 187 5 10 415 17 407 1.19e-135 398
MS.gene93159.t1 AT3G01990 50.246 406 187 5 10 415 17 407 1.19e-135 398
MS.gene93159.t1 AT3G01990 50.246 406 187 5 10 415 3 393 1.66e-135 397
MS.gene93159.t1 AT3G01990 50.246 406 187 5 10 415 3 393 1.66e-135 397
MS.gene93159.t1 AT3G01990 50.246 406 187 5 10 415 17 407 2.10e-135 397
MS.gene93159.t1 AT3G01990 50.246 406 187 5 10 415 3 393 2.43e-135 396
MS.gene93159.t1 AT5G25320 48.507 402 181 5 38 414 1 401 1.65e-128 380
MS.gene93159.t1 AT4G22780 48.030 406 184 5 12 415 9 389 1.03e-125 372
MS.gene93159.t1 AT4G22780 48.030 406 184 5 12 415 9 389 1.03e-125 372
MS.gene93159.t1 AT1G12420 45.476 420 206 8 8 427 6 402 1.24e-120 359
MS.gene93159.t1 AT5G25320 47.326 374 169 7 1 347 1 373 2.75e-113 338
MS.gene93159.t1 AT5G65890 40.890 472 248 7 7 454 8 472 1.08e-112 340
MS.gene93159.t1 AT5G65890 40.890 472 248 7 7 454 8 472 1.08e-112 340
MS.gene93159.t1 AT3G01990 48.980 343 160 5 10 352 17 344 2.05e-107 322
MS.gene93159.t1 AT3G01990 48.980 343 160 5 10 352 3 330 2.25e-107 322
MS.gene93159.t1 AT3G01990 49.408 338 156 5 10 347 17 339 4.37e-107 321
MS.gene93159.t1 AT1G12420 43.182 352 178 7 76 427 1 330 6.68e-92 283
MS.gene93159.t1 AT5G65890 38.642 427 231 7 52 454 1 420 3.45e-91 283
MS.gene93159.t1 AT5G65890 38.642 427 231 7 52 454 1 420 3.45e-91 283
MS.gene93159.t1 AT3G01990 47.003 317 153 5 10 326 17 318 8.29e-88 271
MS.gene93159.t1 AT3G01990 47.003 317 153 5 10 326 3 304 8.81e-88 270
MS.gene93159.t1 AT5G65890 37.143 350 197 5 124 454 13 358 6.82e-68 221

Find 134 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCAACTCTTCACACCTTC+TGG 0.132030 1.3:+15453591 None:intergenic
TTGATTCTCCTCCCTCTTTC+AGG 0.151257 1.3:-15453170 MS.gene93159:CDS
TTCTGATGGTAGTTGGTTTA+TGG 0.190044 1.3:-15454396 MS.gene93159:CDS
AATACGTTCTATTTCGATAA+TGG 0.203955 1.3:+15453146 None:intergenic
GCCCATCCTCGAGAGGTTTC+TGG 0.246221 1.3:+15450896 None:intergenic
ATACGTTCTATTTCGATAAT+GGG 0.299154 1.3:+15453147 None:intergenic
CCCAACTCTTCACACCTTCT+GGG 0.315377 1.3:+15453592 None:intergenic
GAAGCACTGCGTAAAGAAAT+TGG 0.317035 1.3:-15450968 MS.gene93159:CDS
GCTAGAGTAAGCTTCTTCTT+TGG 0.317293 1.3:-15450875 MS.gene93159:CDS
CTAGAGTAAGCTTCTTCTTT+GGG 0.326628 1.3:-15450874 MS.gene93159:CDS
CCAAATGTTGTTTGCTGATA+GGG 0.330716 1.3:-15453232 MS.gene93159:CDS
ATAGAACGTATTGAAGAAAA+AGG 0.338531 1.3:-15453135 MS.gene93159:CDS
ACCAAATGTTGTTTGCTGAT+AGG 0.341425 1.3:-15453233 MS.gene93159:CDS
TCCACTTCGCAGGGTCTCTA+TGG 0.347979 1.3:-15455056 MS.gene93159:intron
CCCTATCAGCAAACAACATT+TGG 0.356933 1.3:+15453232 None:intergenic
ATTTAGTCCTTTCTCTCCTA+TGG 0.378855 1.3:+15451042 None:intergenic
CTTCTTCTTTGGGAACTTGT+TGG 0.378986 1.3:-15450864 MS.gene93159:CDS
GGTGAAACCCATGGAGAAAC+TGG 0.381534 1.3:+15453281 None:intergenic
TCGAGAGGTTTCTGGTGCTT+TGG 0.382279 1.3:+15450904 None:intergenic
ATCAGAAGATATGTAAGCTT+TGG 0.390558 1.3:+15454412 None:intergenic
CAGCTGCAATCACATTGAAT+TGG 0.392381 1.3:+15453460 None:intergenic
TCTGGGCTCTTGCGGCCCTT+TGG 0.393975 1.3:+15453609 None:intergenic
ACGACTTCCAGCAGAATTCC+CGG 0.398838 1.3:+15454467 None:intergenic
CTGAAGTTTGGACTCATAAC+AGG 0.401956 1.3:-15453440 MS.gene93159:CDS
TCTGGTGCTTTGGTGTTGGC+TGG 0.406285 1.3:+15450914 None:intergenic
ACATATCTTCTGATGGTAGT+TGG 0.412715 1.3:-15454403 MS.gene93159:CDS
GATTGATAGCGTCAATAAAC+CGG 0.415676 1.3:-15454486 MS.gene93159:CDS
ATGTGATTGCAGCTGAAGTT+TGG 0.418119 1.3:-15453452 MS.gene93159:CDS
GCCCAGAAGGTGTGAAGAGT+TGG 0.421778 1.3:-15453593 MS.gene93159:CDS
AGAACGGCTTAACAGTTTGT+AGG 0.425881 1.3:-15451078 MS.gene93159:CDS
CATTGAATTGGAAGCTCGCC+AGG 0.426882 1.3:+15453472 None:intergenic
GGTTTCTGGTGCTTTGGTGT+TGG 0.431935 1.3:+15450910 None:intergenic
AATTATTGACTTTATTGAAA+AGG 0.437841 1.3:-15454091 MS.gene93159:intron
CAATAAACCGGGAATTCTGC+TGG 0.451982 1.3:-15454474 MS.gene93159:CDS
ATTGAATGGCAAAAGTTTGC+TGG 0.454558 1.3:-15455565 None:intergenic
TCGTACTCAGGATCAAAGTA+TGG 0.456449 1.3:+15455542 None:intergenic
CATACAGCCATTGAGCTCAT+TGG 0.456613 1.3:-15453534 MS.gene93159:CDS
CCCAGAAGGTGTGAAGAGTT+GGG 0.459787 1.3:-15453592 MS.gene93159:CDS
TCTTTGGGAACTTGTTGGAA+AGG 0.462241 1.3:-15450859 MS.gene93159:CDS
CATGCCTCCATCTCATCTGA+AGG 0.466025 1.3:-15453021 MS.gene93159:CDS
TGAAGAGTTGGGAAGGCAAA+CGG 0.470682 1.3:-15453581 MS.gene93159:CDS
GGCTTAACAGTTTGTAGGGC+AGG 0.471990 1.3:-15451073 MS.gene93159:CDS
GCCCGGACCAGTTTCTCCAT+GGG 0.476717 1.3:-15453288 MS.gene93159:CDS
GGCCCGGACCAGTTTCTCCA+TGG 0.476875 1.3:-15453289 MS.gene93159:CDS
TGATGCAACAAACCAAGGTC+TGG 0.477403 1.3:-15453391 MS.gene93159:CDS
ACACTGAAGGGGAGAAAGAA+AGG 0.477680 1.3:-15452084 MS.gene93159:CDS
TCAATGATGTTCATATCCAC+AGG 0.481133 1.3:+15450989 None:intergenic
TTGCTGAAGTTCTCGTACTC+AGG 0.482576 1.3:+15455530 None:intergenic
TTATGAAGTCAAGGTCTGTC+AGG 0.485620 1.3:+15454438 None:intergenic
CGGGTTGGCATTCACTCCAT+TGG 0.490248 1.3:-15453561 MS.gene93159:CDS
GTCTGAGATATCAGCTGTCC+TGG 0.493937 1.3:-15453490 MS.gene93159:CDS
AACCCATGGAGAAACTGGTC+CGG 0.494805 1.3:+15453286 None:intergenic
CTCATTGGTCGGGACCGTCC+AGG 0.495249 1.3:-15453519 MS.gene93159:CDS
TCACATTGACCATCACAGTC+TGG 0.502894 1.3:+15450945 None:intergenic
GAAGAGTTGGGAAGGCAAAC+GGG 0.503318 1.3:-15453580 MS.gene93159:CDS
TTGAATCATCATCCAGACCT+TGG 0.507102 1.3:+15453379 None:intergenic
ATTCTTAGGAGTACTTCATC+AGG 0.510626 1.3:-15452129 MS.gene93159:intron
TGAACATTTAAATAGGCTCT+AGG 0.512518 1.3:-15453633 MS.gene93159:intron
CCATGATTGTACACTGATCA+AGG 0.512717 1.3:-15455020 MS.gene93159:intron
ACCCATGGAGAAACTGGTCC+GGG 0.514443 1.3:+15453287 None:intergenic
AGCCATTGAGCTCATTGGTC+GGG 0.518001 1.3:-15453529 MS.gene93159:CDS
TTCGATAATGGGCCTGAAAG+AGG 0.518921 1.3:+15453158 None:intergenic
CCTTGATCAGTGTACAATCA+TGG 0.522276 1.3:+15455020 None:intergenic
TCGATAATGGGCCTGAAAGA+GGG 0.522792 1.3:+15453159 None:intergenic
CACCAGAAACCTCTCGAGGA+TGG 0.523676 1.3:-15450898 MS.gene93159:CDS
AAGCTCAACCACATCCTTCG+TGG 0.529052 1.3:-15453333 MS.gene93159:CDS
TATCAGCAAACAACATTTGG+TGG 0.529977 1.3:+15453235 None:intergenic
TGAAGGGCCATATGCTTCAC+AGG 0.531696 1.3:-15453004 MS.gene93159:intron
TTCTATGTGAGAGATGCATA+TGG 0.536976 1.3:-15451016 MS.gene93159:CDS
TAGTGTGAGATGCAAAGATC+GGG 0.541924 1.3:-15453100 MS.gene93159:CDS
GATGGTAGTTGGTTTATGGA+TGG 0.543454 1.3:-15454392 MS.gene93159:intron
GAGTTAACAGGGAACCTTGG+AGG 0.545613 1.3:+15455497 None:intergenic
TACTTCATCAGGCACGTGGA+TGG 0.545747 1.3:-15452118 MS.gene93159:CDS
GTGTCAACCATAGGAGAGAA+AGG 0.546097 1.3:-15451049 MS.gene93159:CDS
CCTTCTGTCCATGTGGGTGA+AGG 0.546823 1.3:+15453260 None:intergenic
ACCAGAAACCTCTCGAGGAT+GGG 0.548981 1.3:-15450897 MS.gene93159:CDS
GAACGGCTTAACAGTTTGTA+GGG 0.558245 1.3:-15451077 MS.gene93159:CDS
ATGCATACCTGTGAAGCATA+TGG 0.558826 1.3:+15452997 None:intergenic
TAAATAGGCTCTAGGACCAA+AGG 0.562311 1.3:-15453625 MS.gene93159:intron
AAGGGCCGCAAGAGCCCAGA+AGG 0.562789 1.3:-15453606 MS.gene93159:CDS
GGATGCACACTTGACACTGA+AGG 0.564728 1.3:-15452097 MS.gene93159:CDS
GGGTTTCACCTTCACCCACA+TGG 0.565505 1.3:-15453268 MS.gene93159:CDS
GCTTGCTGTCTGAAGTGACT+AGG 0.566444 1.3:-15451111 MS.gene93159:CDS
CTTTGGTTATTATGAAGTCA+AGG 0.566582 1.3:+15454429 None:intergenic
AGTTAACAGGGAACCTTGGA+GGG 0.567218 1.3:+15455498 None:intergenic
TCACACCTTCTGGGCTCTTG+CGG 0.569295 1.3:+15453601 None:intergenic
AAATAGGCTCTAGGACCAAA+GGG 0.571475 1.3:-15453624 MS.gene93159:intron
CCTCACAACCACGAAGGATG+TGG 0.572226 1.3:+15453325 None:intergenic
GTCCCGACCAATGAGCTCAA+TGG 0.573813 1.3:+15453527 None:intergenic
CCTTCACCCACATGGACAGA+AGG 0.575437 1.3:-15453260 MS.gene93159:CDS
TATCCTTTGCACACAGCTCA+AGG 0.579485 1.3:+15451140 None:intergenic
GATGCACACTTGACACTGAA+GGG 0.583904 1.3:-15452096 MS.gene93159:CDS
CCACATCCTTCGTGGTTGTG+AGG 0.585266 1.3:-15453325 MS.gene93159:CDS
TACTCTAGCCCATCCTCGAG+AGG 0.585301 1.3:+15450889 None:intergenic
AATGGCTGTATGATCACCAA+TGG 0.585858 1.3:+15453545 None:intergenic
TTAGTGTGAGATGCAAAGAT+CGG 0.586475 1.3:-15453101 MS.gene93159:CDS
AGGGCAGGTGTGTCAACCAT+AGG 0.587010 1.3:-15451058 MS.gene93159:CDS
GTGGAGCCTTCTGTCCATGT+GGG 0.594043 1.3:+15453254 None:intergenic
AAAGCTTACATATCTTCTGA+TGG 0.594595 1.3:-15454410 MS.gene93159:CDS
CAGCCATTGAGCTCATTGGT+CGG 0.596989 1.3:-15453530 MS.gene93159:CDS
AGTTGGGAAGGCAAACGGGT+TGG 0.597769 1.3:-15453576 MS.gene93159:CDS
CAATGATGTTCATATCCACA+GGG 0.601090 1.3:+15450990 None:intergenic
GAAGGTGTGAAGAGTTGGGA+AGG 0.603934 1.3:-15453588 MS.gene93159:CDS
ATATGGCCCTTCAGATGAGA+TGG 0.605356 1.3:+15453014 None:intergenic
GATAGGGATTATGAGAGTGC+TGG 0.606196 1.3:-15453216 MS.gene93159:CDS
ATGCCTCCATCTCATCTGAA+GGG 0.606421 1.3:-15453020 MS.gene93159:CDS
CACTGAAGGGGAGAAAGAAA+GGG 0.607213 1.3:-15452083 MS.gene93159:CDS
GTCAATGATGCAACAAACCA+AGG 0.609853 1.3:-15453396 MS.gene93159:CDS
ATGAACAGTATTTCATGTCA+CGG 0.611220 1.3:-15454145 MS.gene93159:intron
TGTGATGGTCAATGTGAAGA+AGG 0.612803 1.3:-15450939 MS.gene93159:CDS
ACTAGGATTCTACGAGAGAA+CGG 0.613355 1.3:-15451094 MS.gene93159:CDS
AGAAATTGGCCAGACTGTGA+TGG 0.614374 1.3:-15450954 MS.gene93159:CDS
GCAACAGAATCAACCCTCCA+AGG 0.615590 1.3:-15455511 MS.gene93159:intron
GATATCTCAGACAAAAGACC+TGG 0.616057 1.3:+15453501 None:intergenic
AGGGATTATGAGAGTGCTGG+TGG 0.616212 1.3:-15453213 MS.gene93159:CDS
TGTCTGCACTCTTACTGACA+TGG 0.618144 1.3:-15453058 MS.gene93159:CDS
TATTCAAAGAAGAGTAAGCG+AGG 0.636120 1.3:-15452038 MS.gene93159:intron
GGTGGAGCCTTCTGTCCATG+TGG 0.646466 1.3:+15453253 None:intergenic
TGGCCCTTCAGATGAGATGG+AGG 0.653838 1.3:+15453017 None:intergenic
TTGTGAGGATGATGAGAATG+TGG 0.655874 1.3:-15453310 MS.gene93159:CDS
GTGGGTGAAGGTGAAACCCA+TGG 0.659048 1.3:+15453272 None:intergenic
ATTGATAGCGTCAATAAACC+GGG 0.662972 1.3:-15454485 MS.gene93159:CDS
GGAGTACTTCATCAGGCACG+TGG 0.663877 1.3:-15452122 MS.gene93159:CDS
ATGCACACTTGACACTGAAG+GGG 0.665219 1.3:-15452095 MS.gene93159:CDS
GAGCCTTGAGCTGTGTGCAA+AGG 0.668681 1.3:-15451143 MS.gene93159:CDS
TTTCATGTCACGGATCAGCA+AGG 0.670024 1.3:-15454135 MS.gene93159:CDS
AGGATGATGAGAATGTGGCC+CGG 0.675899 1.3:-15453305 MS.gene93159:CDS
CTGTGTGCAAAGGATAGAGT+GGG 0.677348 1.3:-15451133 MS.gene93159:CDS
GCTGTGTGCAAAGGATAGAG+TGG 0.682070 1.3:-15451134 MS.gene93159:CDS
ATAATGGGCCTGAAAGAGGG+AGG 0.688306 1.3:+15453162 None:intergenic
CATCATCCTCACAACCACGA+AGG 0.690210 1.3:+15453319 None:intergenic
TCTCAGACAAAAGACCTGGA+CGG 0.708969 1.3:+15453505 None:intergenic
AAAGCACCAGAAACCTCTCG+AGG 0.723344 1.3:-15450902 MS.gene93159:CDS
AGATGCATATGGAAACCCTG+TGG 0.774336 1.3:-15451005 MS.gene93159:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGAATTAAAAATTGATA+AGG + chr1.3:15454886-15454905 None:intergenic 10.0%
!! TTGTTTACTTAATTAAAATA+TGG - chr1.3:15452111-15452130 MS.gene93159:CDS 10.0%
!! AAATTAATTGACAAAATTTG+AGG - chr1.3:15454209-15454228 MS.gene93159:intron 15.0%
!! AGTAACTATAAAATAAAGAA+TGG + chr1.3:15453460-15453479 None:intergenic 15.0%
!! ATTAAATAAACTAATGATGA+TGG + chr1.3:15451835-15451854 None:intergenic 15.0%
!! TAGACCAAAAAAAAAAAAAA+AGG - chr1.3:15451535-15451554 MS.gene93159:intron 15.0%
!!! AATTATTGACTTTATTGAAA+AGG - chr1.3:15452316-15452335 MS.gene93159:intron 15.0%
!!! AGAATTAATTAGTTATTTTG+AGG + chr1.3:15451420-15451439 None:intergenic 15.0%
!!! ATTAATTCTAACATTTTTCA+TGG - chr1.3:15451431-15451450 MS.gene93159:intron 15.0%
!!! ATTAGTTTATTTAATTTCCA+TGG - chr1.3:15451840-15451859 MS.gene93159:intron 15.0%
!!! TTGTTTTCAAATTTTTCTAT+AGG + chr1.3:15453713-15453732 None:intergenic 15.0%
!!! TTTACAGTAATATTTTGAAT+TGG - chr1.3:15453504-15453523 MS.gene93159:CDS 15.0%
!!! TTTTTTTTTTTGTCAAAACA+AGG + chr1.3:15451178-15451197 None:intergenic 15.0%
!! AAGTTAAATTCAATGATGTT+AGG + chr1.3:15451583-15451602 None:intergenic 20.0%
!! AATTTCTTTATTCCTTCATT+TGG + chr1.3:15453632-15453651 None:intergenic 20.0%
!! AGGTTCAAAATGTATTAATT+TGG + chr1.3:15454609-15454628 None:intergenic 20.0%
!! GAAAGAACAAAAATAAGAAT+TGG + chr1.3:15452465-15452484 None:intergenic 20.0%
!! GTTAAATTAAAAGCAAACAA+AGG + chr1.3:15453841-15453860 None:intergenic 20.0%
!! TAGGGACTATAATTAATTAA+TGG - chr1.3:15455038-15455057 MS.gene93159:CDS 20.0%
!!! ATAAATAACAGTATGACTTT+TGG - chr1.3:15451017-15451036 MS.gene93159:CDS 20.0%
!!! CATCATTGAATTTAACTTAT+TGG - chr1.3:15451585-15451604 MS.gene93159:intron 20.0%
!!! GACATGCTTTTAATAATATA+TGG - chr1.3:15452370-15452389 MS.gene93159:intron 20.0%
!!! GCATTTAATTTTATGTTTTG+TGG + chr1.3:15451132-15451151 None:intergenic 20.0%
!!! TAATTTTATTAGTTTTCGAC+AGG - chr1.3:15454934-15454953 MS.gene93159:intron 20.0%
!!! TGCACCTTTTTTTTTTTTTT+TGG + chr1.3:15451542-15451561 None:intergenic 20.0%
!!! TTAAATATTTTGCAGATCAT+TGG + chr1.3:15450965-15450984 None:intergenic 20.0%
!!! TTTTTTTCCTTCATATTTTG+AGG + chr1.3:15454812-15454831 None:intergenic 20.0%
! AAAACCTAAAAACAAGATGA+GGG - chr1.3:15453735-15453754 MS.gene93159:intron 25.0%
! AAATTCAATGATGTTAGGTT+AGG + chr1.3:15451578-15451597 None:intergenic 25.0%
! AACAGACTCTAAATATCAAT+TGG - chr1.3:15452690-15452709 MS.gene93159:intron 25.0%
! AACCATTACTAAAATAGACA+AGG - chr1.3:15454429-15454448 MS.gene93159:CDS 25.0%
! AATACGTTCTATTTCGATAA+TGG + chr1.3:15453264-15453283 None:intergenic 25.0%
! ATAATAATATGCATGATAGC+TGG + chr1.3:15455112-15455131 None:intergenic 25.0%
! ATACGTTCTATTTCGATAAT+GGG + chr1.3:15453263-15453282 None:intergenic 25.0%
! ATAGAACGTATTGAAGAAAA+AGG - chr1.3:15453272-15453291 MS.gene93159:CDS 25.0%
! CTAGTTGTGAACATTTAAAT+AGG - chr1.3:15452767-15452786 MS.gene93159:intron 25.0%
! TGTTCTTGTAAAAAGACTAA+GGG - chr1.3:15453660-15453679 MS.gene93159:intron 25.0%
! TTCTTTAGTCCTAGTAAATT+AGG - chr1.3:15451784-15451803 MS.gene93159:intron 25.0%
! TTGTTCTTGTAAAAAGACTA+AGG - chr1.3:15453659-15453678 MS.gene93159:intron 25.0%
! TTGTTGCATATGCAAATATT+GGG - chr1.3:15452141-15452160 MS.gene93159:intron 25.0%
! TTTGTTGCATATGCAAATAT+TGG - chr1.3:15452140-15452159 MS.gene93159:intron 25.0%
!! ATGTTTGAAGTATGTAGTAA+GGG - chr1.3:15454151-15454170 MS.gene93159:intron 25.0%
!! TAAACTATCGTGATTTTGTA+GGG - chr1.3:15455020-15455039 MS.gene93159:intron 25.0%
!! TAGACAGTCATGATTTTATA+AGG + chr1.3:15454855-15454874 None:intergenic 25.0%
!! TATGTTTGAAGTATGTAGTA+AGG - chr1.3:15454150-15454169 MS.gene93159:intron 25.0%
!! TTAAACTATCGTGATTTTGT+AGG - chr1.3:15455019-15455038 MS.gene93159:intron 25.0%
!! TTGATATTTAGAGTCTGTTT+AGG + chr1.3:15452689-15452708 None:intergenic 25.0%
!! TTTTGCAATTAAAACGGAAA+AGG - chr1.3:15453758-15453777 MS.gene93159:intron 25.0%
!!! ATCCTTGTCTATTTTAGTAA+TGG + chr1.3:15454434-15454453 None:intergenic 25.0%
!!! CTCGTTTATTGTTTTTAAGA+AGG - chr1.3:15453687-15453706 MS.gene93159:intron 25.0%
!!! CTTCATATTTTGAGGTTATA+GGG + chr1.3:15454804-15454823 None:intergenic 25.0%
!!! GGTAAAAGTTTTATAGACTA+AGG - chr1.3:15454996-15455015 MS.gene93159:intron 25.0%
!!! GTCTGAATTTTCTGAAAAAT+AGG - chr1.3:15453568-15453587 MS.gene93159:CDS 25.0%
!!! TAAGTTGATGTAATATCGAA+TGG - chr1.3:15451877-15451896 MS.gene93159:intron 25.0%
AAAGCTTACATATCTTCTGA+TGG - chr1.3:15451997-15452016 MS.gene93159:intron 30.0%
AACAAGCATTCTATTTCAAG+AGG + chr1.3:15450935-15450954 None:intergenic 30.0%
AACTATGAACACTATCAGTA+AGG + chr1.3:15452618-15452637 None:intergenic 30.0%
AAGAACACATATGAAGCTAT+GGG + chr1.3:15454513-15454532 None:intergenic 30.0%
AATCATGCTACCATATACTT+AGG + chr1.3:15452440-15452459 None:intergenic 30.0%
AATGTTTGGCCTAATTTACT+AGG + chr1.3:15451796-15451815 None:intergenic 30.0%
ACTATGAACACTATCAGTAA+GGG + chr1.3:15452617-15452636 None:intergenic 30.0%
AGTAAATTAGGCCAAACATT+AGG - chr1.3:15451796-15451815 MS.gene93159:intron 30.0%
ATATCTTACAGGACTATAGA+TGG - chr1.3:15454975-15454994 MS.gene93159:intron 30.0%
ATCAGAAGATATGTAAGCTT+TGG + chr1.3:15451998-15452017 None:intergenic 30.0%
ATGAACAGTATTTCATGTCA+CGG - chr1.3:15452262-15452281 MS.gene93159:intron 30.0%
ATTTAGCAATTCACTGAAAG+TGG + chr1.3:15451752-15451771 None:intergenic 30.0%
CAAAACCTAAAAACAAGATG+AGG - chr1.3:15453734-15453753 MS.gene93159:intron 30.0%
CAGAATTTATAAACACAGCT+AGG - chr1.3:15452568-15452587 MS.gene93159:intron 30.0%
CCTATAACCTCAAAATATGA+AGG - chr1.3:15454802-15454821 MS.gene93159:intron 30.0%
CCTGTAAGATATAAAAACTG+TGG + chr1.3:15454967-15454986 None:intergenic 30.0%
CTTTGGTTATTATGAAGTCA+AGG + chr1.3:15451981-15452000 None:intergenic 30.0%
GATTTGAATGATATTACGTG+TGG + chr1.3:15454782-15454801 None:intergenic 30.0%
GGAAAAGAAACCTAAGTATA+TGG - chr1.3:15452427-15452446 MS.gene93159:intron 30.0%
GTTGTTCTCATAAACTATCT+TGG + chr1.3:15454037-15454056 None:intergenic 30.0%
GTTTATTTGAGCTTATCTAC+TGG - chr1.3:15453921-15453940 MS.gene93159:intron 30.0%
TAGGAAACAAAAATATTGCG+AGG - chr1.3:15453587-15453606 MS.gene93159:CDS 30.0%
TAGTGACTTAATGTTTCTCT+TGG - chr1.3:15454478-15454497 MS.gene93159:CDS 30.0%
TATCTGAAAAAGTTAACCGT+AGG + chr1.3:15451644-15451663 None:intergenic 30.0%
TATTTCAAGAGGAGTTAACA+GGG + chr1.3:15450924-15450943 None:intergenic 30.0%
TGAACATTTAAATAGGCTCT+AGG - chr1.3:15452774-15452793 MS.gene93159:intron 30.0%
TGTAATGCACTTACAATCTT+TGG - chr1.3:15452544-15452563 MS.gene93159:intron 30.0%
TGTTCAAGGTCAAAACATTA+GGG + chr1.3:15453815-15453834 None:intergenic 30.0%
TTGTTGATGTGGTAATTCTT+AGG - chr1.3:15454264-15454283 MS.gene93159:intron 30.0%
! ATAGCTACTCTAGTTTGAAT+TGG - chr1.3:15453899-15453918 MS.gene93159:intron 30.0%
! ATTAAGTTGTTTATCCCAAC+AGG - chr1.3:15454118-15454137 MS.gene93159:CDS 30.0%
! CCACAGTTTTTATATCTTAC+AGG - chr1.3:15454964-15454983 MS.gene93159:intron 30.0%
! GTCAAAACATTAGGGTTTTA+TGG + chr1.3:15453807-15453826 None:intergenic 30.0%
! TAATTTCCATGGTTTTCTCA+TGG - chr1.3:15451851-15451870 MS.gene93159:intron 30.0%
! TGAGGGTTTTGCAATTAAAA+CGG - chr1.3:15453752-15453771 MS.gene93159:intron 30.0%
! TTAAGTTGTTTATCCCAACA+GGG - chr1.3:15454119-15454138 MS.gene93159:CDS 30.0%
! TTCACAACTAGTTGATACAA+GGG + chr1.3:15452758-15452777 None:intergenic 30.0%
! TTTGAGGTAGAATGACAAAA+TGG - chr1.3:15454225-15454244 MS.gene93159:intron 30.0%
!! AGTAGGCTTTATCTTTGTTT+TGG - chr1.3:15452406-15452425 MS.gene93159:intron 30.0%
!!! AAAACCCTCATCTTGTTTTT+AGG + chr1.3:15453742-15453761 None:intergenic 30.0%
!!! CCTTCATATTTTGAGGTTAT+AGG + chr1.3:15454805-15454824 None:intergenic 30.0%
AAAACTAGTCCTGTGTTACA+AGG - chr1.3:15451210-15451229 MS.gene93159:intron 35.0%
AACATAGTATTAGTCCCTGT+TGG + chr1.3:15454136-15454155 None:intergenic 35.0%
AAGGGAATTTCTACTGTGTT+TGG + chr1.3:15452599-15452618 None:intergenic 35.0%
AAGTGCATTACACACTCAAA+AGG + chr1.3:15452536-15452555 None:intergenic 35.0%
AATAGACAAGGATGAACTTC+TGG - chr1.3:15454441-15454460 MS.gene93159:CDS 35.0%
AATGGTACGGTATACATACA+TGG - chr1.3:15454654-15454673 MS.gene93159:intron 35.0%
ACATAGTATTAGTCCCTGTT+GGG + chr1.3:15454135-15454154 None:intergenic 35.0%
ACATATCTTCTGATGGTAGT+TGG - chr1.3:15452004-15452023 MS.gene93159:intron 35.0%
AGAACACATATGAAGCTATG+GGG + chr1.3:15454512-15454531 None:intergenic 35.0%
AGCATGTCAGATAAAAATCG+AGG + chr1.3:15452358-15452377 None:intergenic 35.0%
AGTGCATTACACACTCAAAA+GGG + chr1.3:15452535-15452554 None:intergenic 35.0%
ATTTAGTCCTTTCTCTCCTA+TGG + chr1.3:15455368-15455387 None:intergenic 35.0%
CAAGTGACTTAAAATTCCAG+TGG + chr1.3:15451498-15451517 None:intergenic 35.0%
CAATGATGTTCATATCCACA+GGG + chr1.3:15455420-15455439 None:intergenic 35.0%
CTAGAGTAAGCTTCTTCTTT+GGG - chr1.3:15455533-15455552 MS.gene93159:CDS 35.0%
CTATTTCAAGAGGAGTTAAC+AGG + chr1.3:15450925-15450944 None:intergenic 35.0%
GAAGAACACATATGAAGCTA+TGG + chr1.3:15454514-15454533 None:intergenic 35.0%
GCAAATCAAGACTCAAAATG+AGG + chr1.3:15451457-15451476 None:intergenic 35.0%
GTGTTCAAGGTCAAAACATT+AGG + chr1.3:15453816-15453835 None:intergenic 35.0%
TAGCACTTGTGAAACTGTTT+GGG - chr1.3:15453947-15453966 MS.gene93159:intron 35.0%
TATCAGCAAACAACATTTGG+TGG + chr1.3:15453175-15453194 None:intergenic 35.0%
TATTCAAAGAAGAGTAAGCG+AGG - chr1.3:15454369-15454388 MS.gene93159:intron 35.0%
TCAATGATGTTCATATCCAC+AGG + chr1.3:15455421-15455440 None:intergenic 35.0%
TCACTGAAAGTGGTTATAAC+AGG + chr1.3:15451742-15451761 None:intergenic 35.0%
TCGAGCATAAATATGACTGA+TGG + chr1.3:15455089-15455108 None:intergenic 35.0%
TCTCATAAACTATCTTGGAG+AGG + chr1.3:15454032-15454051 None:intergenic 35.0%
TGTAGACTAAGTTGTTGATG+TGG - chr1.3:15454253-15454272 MS.gene93159:intron 35.0%
TTAAACTCCTTGTGGAATTG+AGG - chr1.3:15451270-15451289 MS.gene93159:intron 35.0%
TTAGCACTTGTGAAACTGTT+TGG - chr1.3:15453946-15453965 MS.gene93159:intron 35.0%
TTAGTGTGAGATGCAAAGAT+CGG - chr1.3:15453306-15453325 MS.gene93159:CDS 35.0%
TTATCTCCATGAGAAAACCA+TGG + chr1.3:15451860-15451879 None:intergenic 35.0%
TTCTATGTGAGAGATGCATA+TGG - chr1.3:15455391-15455410 MS.gene93159:intron 35.0%
TTGTTTACAAACTACACCCA+AGG + chr1.3:15453545-15453564 None:intergenic 35.0%
TTTAACCTATGACACCACTA+GGG + chr1.3:15451255-15451274 None:intergenic 35.0%
TTTAAGTCACTTGTATCCTG+TGG - chr1.3:15451505-15451524 MS.gene93159:intron 35.0%
TTTGGTCTACAAAAAACCAC+AGG + chr1.3:15451524-15451543 None:intergenic 35.0%
! ACCAAATGTTGTTTGCTGAT+AGG - chr1.3:15453174-15453193 MS.gene93159:CDS 35.0%
! ATGGTAGCAATGCTTTTAGT+AGG - chr1.3:15452389-15452408 MS.gene93159:intron 35.0%
! CCAAATGTTGTTTGCTGATA+GGG - chr1.3:15453175-15453194 MS.gene93159:CDS 35.0%
! GTTCACAACTAGTTGATACA+AGG + chr1.3:15452759-15452778 None:intergenic 35.0%
! TTCTGATGGTAGTTGGTTTA+TGG - chr1.3:15452011-15452030 MS.gene93159:intron 35.0%
! TTTGAAGTATGTAGTAAGGG+AGG - chr1.3:15454154-15454173 MS.gene93159:intron 35.0%
!! AGTCTTGATTTGCTATCTGA+AGG - chr1.3:15451464-15451483 MS.gene93159:intron 35.0%
!! ATTCTTAGGAGTACTTCATC+AGG - chr1.3:15454278-15454297 MS.gene93159:intron 35.0%
!! ATTGATAGCGTCAATAAACC+GGG - chr1.3:15451922-15451941 MS.gene93159:intron 35.0%
!! CACATTTTCAAGATTGCCTA+CGG - chr1.3:15451625-15451644 MS.gene93159:intron 35.0%
!! GATTGATAGCGTCAATAAAC+CGG - chr1.3:15451921-15451940 MS.gene93159:intron 35.0%
!! TTGTTTTGTTGCGAATGGTA+CGG - chr1.3:15454641-15454660 MS.gene93159:intron 35.0%
!!! GAGGAATTTTTTAGTTCAGC+TGG - chr1.3:15453606-15453625 MS.gene93159:CDS 35.0%
AACTTGAACCAGCAATGCAT+TGG - chr1.3:15452058-15452077 MS.gene93159:CDS 40.0%
AATAGCAGGTAGATACTAGC+AGG + chr1.3:15452665-15452684 None:intergenic 40.0%
AATGGCTGTATGATCACCAA+TGG + chr1.3:15452865-15452884 None:intergenic 40.0%
ACAAACTACACCCAAGGATT+TGG + chr1.3:15453539-15453558 None:intergenic 40.0%
ACTAGGATTCTACGAGAGAA+CGG - chr1.3:15455313-15455332 MS.gene93159:intron 40.0%
AGAACGGCTTAACAGTTTGT+AGG - chr1.3:15455329-15455348 MS.gene93159:intron 40.0%
AGCACGAATGTGTATGTTGT+AGG + chr1.3:15452185-15452204 None:intergenic 40.0%
ATGCATACCTGTGAAGCATA+TGG + chr1.3:15453413-15453432 None:intergenic 40.0%
ATGGTCAGATACAATCTGAG+TGG + chr1.3:15454689-15454708 None:intergenic 40.0%
ATGTGATTGCAGCTGAAGTT+TGG - chr1.3:15452955-15452974 MS.gene93159:intron 40.0%
CAGAAGAAGTTGCTCGTTTA+TGG - chr1.3:15451317-15451336 MS.gene93159:intron 40.0%
CAGCTGCAATCACATTGAAT+TGG + chr1.3:15452950-15452969 None:intergenic 40.0%
CATAAACGAGCAACTTCTTC+TGG + chr1.3:15451319-15451338 None:intergenic 40.0%
CATCGTATCCACCAATGAAT+CGG - chr1.3:15454706-15454725 MS.gene93159:intron 40.0%
CCATATACCTCAATTCCACA+AGG + chr1.3:15451280-15451299 None:intergenic 40.0%
CCATGATTGTACACTGATCA+AGG - chr1.3:15451387-15451406 MS.gene93159:intron 40.0%
CCCTATCAGCAAACAACATT+TGG + chr1.3:15453178-15453197 None:intergenic 40.0%
CCTTGATCAGTGTACAATCA+TGG + chr1.3:15451390-15451409 None:intergenic 40.0%
CCTTGTGGAATTGAGGTATA+TGG - chr1.3:15451277-15451296 MS.gene93159:intron 40.0%
CTGAAGTTTGGACTCATAAC+AGG - chr1.3:15452967-15452986 MS.gene93159:intron 40.0%
GAACGGCTTAACAGTTTGTA+GGG - chr1.3:15455330-15455349 MS.gene93159:intron 40.0%
GAATGTGTATGTTGTAGGCA+AGG + chr1.3:15452180-15452199 None:intergenic 40.0%
GACTTAAAATTCCAGTGGCT+AGG + chr1.3:15451493-15451512 None:intergenic 40.0%
GAGTCTGTTTAGGAAATAGC+AGG + chr1.3:15452679-15452698 None:intergenic 40.0%
GATATCTCAGACAAAAGACC+TGG + chr1.3:15452909-15452928 None:intergenic 40.0%
GATATTACGTGTGGAGCATA+AGG + chr1.3:15454773-15454792 None:intergenic 40.0%
GCAAACAAAGGATGTGTTCA+AGG + chr1.3:15453829-15453848 None:intergenic 40.0%
GCTAGAGTAAGCTTCTTCTT+TGG - chr1.3:15455532-15455551 MS.gene93159:CDS 40.0%
GTCAATGATGCAACAAACCA+AGG - chr1.3:15453011-15453030 MS.gene93159:CDS 40.0%
GTCATAGGTTAAACTCCTTG+TGG - chr1.3:15451262-15451281 MS.gene93159:intron 40.0%
GTCTTGTAAGCCAAATCCTT+GGG - chr1.3:15453526-15453545 MS.gene93159:CDS 40.0%
GTGCATTACACACTCAAAAG+GGG + chr1.3:15452534-15452553 None:intergenic 40.0%
GTGGAATTGAGGTATATGGT+GGG - chr1.3:15451281-15451300 MS.gene93159:intron 40.0%
GTTTAACCTATGACACCACT+AGG + chr1.3:15451256-15451275 None:intergenic 40.0%
TAGTGTGAGATGCAAAGATC+GGG - chr1.3:15453307-15453326 MS.gene93159:CDS 40.0%
TCGTACTCAGGATCAAAGTA+TGG + chr1.3:15450868-15450887 None:intergenic 40.0%
TGAAGAAAAAGGCTACTCAG+TGG - chr1.3:15453283-15453302 MS.gene93159:CDS 40.0%
TGACATCTACCTTGTAACAC+AGG + chr1.3:15451222-15451241 None:intergenic 40.0%
TGTGATGGTCAATGTGAAGA+AGG - chr1.3:15455468-15455487 MS.gene93159:intron 40.0%
TGTGGAATTGAGGTATATGG+TGG - chr1.3:15451280-15451299 MS.gene93159:intron 40.0%
TTATGAAGTCAAGGTCTGTC+AGG + chr1.3:15451972-15451991 None:intergenic 40.0%
TTGAATCATCATCCAGACCT+TGG + chr1.3:15453031-15453050 None:intergenic 40.0%
TTGTGAGGATGATGAGAATG+TGG - chr1.3:15453097-15453116 MS.gene93159:CDS 40.0%
! CAAGGATGAACTTCTGGTTA+TGG - chr1.3:15454447-15454466 MS.gene93159:CDS 40.0%
! CTTCTTCTTTGGGAACTTGT+TGG - chr1.3:15455543-15455562 MS.gene93159:CDS 40.0%
! GAACTTCTGGTTATGGAACT+TGG - chr1.3:15454454-15454473 MS.gene93159:CDS 40.0%
! GATGGTAGTTGGTTTATGGA+TGG - chr1.3:15452015-15452034 MS.gene93159:intron 40.0%
!! AAATAGGCTCTAGGACCAAA+GGG - chr1.3:15452783-15452802 MS.gene93159:intron 40.0%
!! ACTAATGATGATGGCCACTT+TGG + chr1.3:15451826-15451845 None:intergenic 40.0%
!! CTAATGATGATGGCCACTTT+GGG + chr1.3:15451825-15451844 None:intergenic 40.0%
!! GAAGCACTGCGTAAAGAAAT+TGG - chr1.3:15455439-15455458 MS.gene93159:intron 40.0%
!! TAAATAGGCTCTAGGACCAA+AGG - chr1.3:15452782-15452801 MS.gene93159:intron 40.0%
!! TCTTTGGGAACTTGTTGGAA+AGG - chr1.3:15455548-15455567 MS.gene93159:CDS 40.0%
!!! TCTGCTTGTTTTGTTGCGAA+TGG - chr1.3:15454636-15454655 MS.gene93159:intron 40.0%
AAACATTAGGCTGCCCAAAG+TGG - chr1.3:15451809-15451828 MS.gene93159:intron 45.0%
AAACTCTGTTTCCACTTCGC+AGG - chr1.3:15451341-15451360 MS.gene93159:intron 45.0%
AACTCTGTTTCCACTTCGCA+GGG - chr1.3:15451342-15451361 MS.gene93159:intron 45.0%
ACACTGAAGGGGAGAAAGAA+AGG - chr1.3:15454323-15454342 MS.gene93159:intron 45.0%
ACTTTGGGCAGCCTAATGTT+TGG + chr1.3:15451810-15451829 None:intergenic 45.0%
AGAAATTGGCCAGACTGTGA+TGG - chr1.3:15455453-15455472 MS.gene93159:intron 45.0%
AGATGCATATGGAAACCCTG+TGG - chr1.3:15455402-15455421 MS.gene93159:intron 45.0%
AGTATACGCCAATGCATTGC+TGG + chr1.3:15452069-15452088 None:intergenic 45.0%
AGTTAACAGGGAACCTTGGA+GGG + chr1.3:15450912-15450931 None:intergenic 45.0%
ATATGGCCCTTCAGATGAGA+TGG + chr1.3:15453396-15453415 None:intergenic 45.0%
ATCCACCAATGAATCGGTGA+CGG - chr1.3:15454712-15454731 MS.gene93159:intron 45.0%
ATGCACACTTGACACTGAAG+GGG - chr1.3:15454312-15454331 MS.gene93159:intron 45.0%
ATGCCTCCATCTCATCTGAA+GGG - chr1.3:15453387-15453406 MS.gene93159:CDS 45.0%
CAAAACAAGCAGATAGCTGC+AGG + chr1.3:15454629-15454648 None:intergenic 45.0%
CAATAAACCGGGAATTCTGC+TGG - chr1.3:15451933-15451952 MS.gene93159:intron 45.0%
CACTGAAGGGGAGAAAGAAA+GGG - chr1.3:15454324-15454343 MS.gene93159:intron 45.0%
CATACAGCCATTGAGCTCAT+TGG - chr1.3:15452873-15452892 MS.gene93159:intron 45.0%
CTGTGTGCAAAGGATAGAGT+GGG - chr1.3:15455274-15455293 MS.gene93159:intron 45.0%
GATGCACACTTGACACTGAA+GGG - chr1.3:15454311-15454330 MS.gene93159:intron 45.0%
GTCATCAGTTCAATCCCTAG+TGG - chr1.3:15451238-15451257 MS.gene93159:intron 45.0%
GTCGTTACCATTGATCCTCT+GGG - chr1.3:15455224-15455243 MS.gene93159:intron 45.0%
GTGTCAACCATAGGAGAGAA+AGG - chr1.3:15455358-15455377 MS.gene93159:intron 45.0%
TACACACTCAAAAGGGGAGA+CGG + chr1.3:15452528-15452547 None:intergenic 45.0%
TAGTTCAGCTGGCCAAATGA+AGG - chr1.3:15453617-15453636 MS.gene93159:CDS 45.0%
TATCCTTTGCACACAGCTCA+AGG + chr1.3:15455270-15455289 None:intergenic 45.0%
TCACATTGACCATCACAGTC+TGG + chr1.3:15455465-15455484 None:intergenic 45.0%
TCTCAGACAAAAGACCTGGA+CGG + chr1.3:15452905-15452924 None:intergenic 45.0%
TGAAGAGTTGGGAAGGCAAA+CGG - chr1.3:15452826-15452845 MS.gene93159:intron 45.0%
TGATGCAACAAACCAAGGTC+TGG - chr1.3:15453016-15453035 MS.gene93159:CDS 45.0%
TGTCGTTACCATTGATCCTC+TGG - chr1.3:15455223-15455242 MS.gene93159:intron 45.0%
TGTCTGCACTCTTACTGACA+TGG - chr1.3:15453349-15453368 MS.gene93159:CDS 45.0%
TGTTGTAGGCAAGGTTTGCA+TGG + chr1.3:15452171-15452190 None:intergenic 45.0%
TTGATTCTCCTCCCTCTTTC+AGG - chr1.3:15453237-15453256 MS.gene93159:CDS 45.0%
TTGCTGAAGTTCTCGTACTC+AGG + chr1.3:15450880-15450899 None:intergenic 45.0%
TTTCATGTCACGGATCAGCA+AGG - chr1.3:15452272-15452291 MS.gene93159:intron 45.0%
! AATGAATCGGTGACGGTTGA+TGG - chr1.3:15454719-15454738 MS.gene93159:intron 45.0%
! CGATTCATTGGTGGATACGA+TGG + chr1.3:15454708-15454727 None:intergenic 45.0%
! GATAGGGATTATGAGAGTGC+TGG - chr1.3:15453191-15453210 MS.gene93159:CDS 45.0%
! GGTCTTGTAAGCCAAATCCT+TGG - chr1.3:15453525-15453544 MS.gene93159:CDS 45.0%
!! ATCAACCGTCACCGATTCAT+TGG + chr1.3:15454720-15454739 None:intergenic 45.0%
!! TCAATCCCTAGTGGTGTCAT+AGG - chr1.3:15451247-15451266 MS.gene93159:intron 45.0%
!! TCGATAATGGGCCTGAAAGA+GGG + chr1.3:15453251-15453270 None:intergenic 45.0%
!! TTCGATAATGGGCCTGAAAG+AGG + chr1.3:15453252-15453271 None:intergenic 45.0%
!!! ATTAACTATAATTTTTAATA+TGG + chr1.3:15452226-15452245 None:intergenic 5.0%
AACCCATGGAGAAACTGGTC+CGG + chr1.3:15453124-15453143 None:intergenic 50.0%
AAGCTCAACCACATCCTTCG+TGG - chr1.3:15453074-15453093 MS.gene93159:CDS 50.0%
ACACACTCAAAAGGGGAGAC+GGG + chr1.3:15452527-15452546 None:intergenic 50.0%
ACCAGAAACCTCTCGAGGAT+GGG - chr1.3:15455510-15455529 MS.gene93159:intron 50.0%
ACCATTGATCCTCTGGGTGA+TGG - chr1.3:15455230-15455249 MS.gene93159:intron 50.0%
ACGACTTCCAGCAGAATTCC+CGG + chr1.3:15451943-15451962 None:intergenic 50.0%
AGCCATTGAGCTCATTGGTC+GGG - chr1.3:15452878-15452897 MS.gene93159:intron 50.0%
AGGATGATGAGAATGTGGCC+CGG - chr1.3:15453102-15453121 MS.gene93159:CDS 50.0%
CAGCCATTGAGCTCATTGGT+CGG - chr1.3:15452877-15452896 MS.gene93159:intron 50.0%
CATCATCCTCACAACCACGA+AGG + chr1.3:15453091-15453110 None:intergenic 50.0%
CATGCCTCCATCTCATCTGA+AGG - chr1.3:15453386-15453405 MS.gene93159:CDS 50.0%
CATTGAATTGGAAGCTCGCC+AGG + chr1.3:15452938-15452957 None:intergenic 50.0%
CCCAACTCTTCACACCTTCT+GGG + chr1.3:15452818-15452837 None:intergenic 50.0%
GAAGAGTTGGGAAGGCAAAC+GGG - chr1.3:15452827-15452846 MS.gene93159:intron 50.0%
GAGGAGTTAACAGGGAACCT+TGG + chr1.3:15450916-15450935 None:intergenic 50.0%
GAGTTAACAGGGAACCTTGG+AGG + chr1.3:15450913-15450932 None:intergenic 50.0%
GCAACAGAATCAACCCTCCA+AGG - chr1.3:15450896-15450915 MS.gene93159:CDS 50.0%
GCTGTGTGCAAAGGATAGAG+TGG - chr1.3:15455273-15455292 MS.gene93159:intron 50.0%
GGATGCACACTTGACACTGA+AGG - chr1.3:15454310-15454329 MS.gene93159:intron 50.0%
GGCTTAACAGTTTGTAGGGC+AGG - chr1.3:15455334-15455353 MS.gene93159:intron 50.0%
GGTGAAACCCATGGAGAAAC+TGG + chr1.3:15453129-15453148 None:intergenic 50.0%
TACTTCATCAGGCACGTGGA+TGG - chr1.3:15454289-15454308 MS.gene93159:intron 50.0%
TCCATCACCCAGAGGATCAA+TGG + chr1.3:15455234-15455253 None:intergenic 50.0%
TCCCAACTCTTCACACCTTC+TGG + chr1.3:15452819-15452838 None:intergenic 50.0%
TCTGAAGGAAACCTAGCCAC+TGG - chr1.3:15451479-15451498 MS.gene93159:intron 50.0%
TGAAGGGCCATATGCTTCAC+AGG - chr1.3:15453403-15453422 MS.gene93159:CDS 50.0%
! AAAGCACCAGAAACCTCTCG+AGG - chr1.3:15455505-15455524 MS.gene93159:intron 50.0%
! CCCAGAAGGTGTGAAGAGTT+GGG - chr1.3:15452815-15452834 MS.gene93159:intron 50.0%
! GAAGGTGTGAAGAGTTGGGA+AGG - chr1.3:15452819-15452838 MS.gene93159:intron 50.0%
! GTCTGAGATATCAGCTGTCC+TGG - chr1.3:15452917-15452936 MS.gene93159:intron 50.0%
!! AACCGTCACCGATTCATTGG+TGG + chr1.3:15454717-15454736 None:intergenic 50.0%
!! AGGGATTATGAGAGTGCTGG+TGG - chr1.3:15453194-15453213 MS.gene93159:CDS 50.0%
!! ATAATGGGCCTGAAAGAGGG+AGG + chr1.3:15453248-15453267 None:intergenic 50.0%
!! GCTTGCTGTCTGAAGTGACT+AGG - chr1.3:15455296-15455315 MS.gene93159:intron 50.0%
!! GGTTTCTGGTGCTTTGGTGT+TGG + chr1.3:15455500-15455519 None:intergenic 50.0%
!! TCGAGAGGTTTCTGGTGCTT+TGG + chr1.3:15455506-15455525 None:intergenic 50.0%
ACCCATGGAGAAACTGGTCC+GGG + chr1.3:15453123-15453142 None:intergenic 55.0%
AGACGGGCGTAGTGCTTAAC+TGG + chr1.3:15452511-15452530 None:intergenic 55.0%
AGGGCAGGTGTGTCAACCAT+AGG - chr1.3:15455349-15455368 MS.gene93159:intron 55.0%
AGTTGGGAAGGCAAACGGGT+TGG - chr1.3:15452831-15452850 MS.gene93159:intron 55.0%
CACCAGAAACCTCTCGAGGA+TGG - chr1.3:15455509-15455528 MS.gene93159:intron 55.0%
CCACATCCTTCGTGGTTGTG+AGG - chr1.3:15453082-15453101 MS.gene93159:CDS 55.0%
CCTCACAACCACGAAGGATG+TGG + chr1.3:15453085-15453104 None:intergenic 55.0%
CCTTCACCCACATGGACAGA+AGG - chr1.3:15453147-15453166 MS.gene93159:CDS 55.0%
CCTTCTGTCCATGTGGGTGA+AGG + chr1.3:15453150-15453169 None:intergenic 55.0%
GAGCCTTGAGCTGTGTGCAA+AGG - chr1.3:15455264-15455283 MS.gene93159:intron 55.0%
GGGTTTCACCTTCACCCACA+TGG - chr1.3:15453139-15453158 MS.gene93159:CDS 55.0%
GTCCCGACCAATGAGCTCAA+TGG + chr1.3:15452883-15452902 None:intergenic 55.0%
GTGGAGCCTTCTGTCCATGT+GGG + chr1.3:15453156-15453175 None:intergenic 55.0%
GTGGGTGAAGGTGAAACCCA+TGG + chr1.3:15453138-15453157 None:intergenic 55.0%
TACTCTAGCCCATCCTCGAG+AGG + chr1.3:15455521-15455540 None:intergenic 55.0%
TCACACCTTCTGGGCTCTTG+CGG + chr1.3:15452809-15452828 None:intergenic 55.0%
TCCACTTCGCAGGGTCTCTA+TGG - chr1.3:15451351-15451370 MS.gene93159:intron 55.0%
TCCATAGAGACCCTGCGAAG+TGG + chr1.3:15451355-15451374 None:intergenic 55.0%
TGGCCCTTCAGATGAGATGG+AGG + chr1.3:15453393-15453412 None:intergenic 55.0%
! GCCCAGAAGGTGTGAAGAGT+TGG - chr1.3:15452814-15452833 MS.gene93159:intron 55.0%
! GGAGTACTTCATCAGGCACG+TGG - chr1.3:15454285-15454304 MS.gene93159:intron 55.0%
!! ATCCTCTGGGTGATGGACAC+AGG - chr1.3:15455237-15455256 MS.gene93159:intron 55.0%
!! CGGGTTGGCATTCACTCCAT+TGG - chr1.3:15452846-15452865 MS.gene93159:intron 55.0%
!! TCCTCTGGGTGATGGACACA+GGG - chr1.3:15455238-15455257 MS.gene93159:intron 55.0%
!! TCTGGTGCTTTGGTGTTGGC+TGG + chr1.3:15455496-15455515 None:intergenic 55.0%
ACCCTGTGTCCATCACCCAG+AGG + chr1.3:15455242-15455261 None:intergenic 60.0%
GCCCATCCTCGAGAGGTTTC+TGG + chr1.3:15455514-15455533 None:intergenic 60.0%
GCCCGGACCAGTTTCTCCAT+GGG - chr1.3:15453119-15453138 MS.gene93159:CDS 60.0%
GGTGGAGCCTTCTGTCCATG+TGG + chr1.3:15453157-15453176 None:intergenic 60.0%
AAGGGCCGCAAGAGCCCAGA+AGG - chr1.3:15452801-15452820 MS.gene93159:intron 65.0%
CTCATTGGTCGGGACCGTCC+AGG - chr1.3:15452888-15452907 MS.gene93159:intron 65.0%
GGCCCGGACCAGTTTCTCCA+TGG - chr1.3:15453118-15453137 MS.gene93159:CDS 65.0%
TCTGGGCTCTTGCGGCCCTT+TGG + chr1.3:15452801-15452820 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 15450847 15455582 15450847 ID=MS.gene93159
chr1.3 mRNA 15450847 15455582 15450847 ID=MS.gene93159.t1;Parent=MS.gene93159
chr1.3 exon 15455512 15455582 15455512 ID=MS.gene93159.t1.exon1;Parent=MS.gene93159.t1
chr1.3 CDS 15455512 15455582 15455512 ID=cds.MS.gene93159.t1;Parent=MS.gene93159.t1
chr1.3 exon 15455021 15455066 15455021 ID=MS.gene93159.t1.exon2;Parent=MS.gene93159.t1
chr1.3 CDS 15455021 15455066 15455021 ID=cds.MS.gene93159.t1;Parent=MS.gene93159.t1
chr1.3 exon 15454393 15454507 15454393 ID=MS.gene93159.t1.exon3;Parent=MS.gene93159.t1
chr1.3 CDS 15454393 15454507 15454393 ID=cds.MS.gene93159.t1;Parent=MS.gene93159.t1
chr1.3 exon 15454092 15454159 15454092 ID=MS.gene93159.t1.exon4;Parent=MS.gene93159.t1
chr1.3 CDS 15454092 15454159 15454092 ID=cds.MS.gene93159.t1;Parent=MS.gene93159.t1
chr1.3 exon 15453005 15453640 15453005 ID=MS.gene93159.t1.exon5;Parent=MS.gene93159.t1
chr1.3 CDS 15453005 15453640 15453005 ID=cds.MS.gene93159.t1;Parent=MS.gene93159.t1
chr1.3 exon 15452039 15452143 15452039 ID=MS.gene93159.t1.exon6;Parent=MS.gene93159.t1
chr1.3 CDS 15452039 15452143 15452039 ID=cds.MS.gene93159.t1;Parent=MS.gene93159.t1
chr1.3 exon 15450847 15451170 15450847 ID=MS.gene93159.t1.exon7;Parent=MS.gene93159.t1
chr1.3 CDS 15450847 15451170 15450847 ID=cds.MS.gene93159.t1;Parent=MS.gene93159.t1
Gene Sequence

>MS.gene93159

ATGGCAAAAGTTTGCTGGCCATACTTTGATCCTGAGTACGAGAACTTCAGCAACAGAATCAACCCTCCAAGGTTCCCTGTTAACTCCTCTTGAAATAGAATGCTTGTTTTCTTTTCCAATGATCTGCAAAATATTTAAACTCTAAAAACATGCACTGATATTTTTTTTTAATAAATAACAGTATGACTTTTGGTATAATCATTTATGAATATTTTTATATTATCATATTTCAGTGTCATTTGACTGCTTTAACATAATCTTAAAAGTCAAAACACGAAAGAACCACAAAACATAAAATTAAATGCTTCTTTTGTTCATAATTACTAGTCCTTGTTTTGACAAAAAAAAAAAAAAGTAAAAAAAAAAACTAGTCCTGTGTTACAAGGTAGATGTCATCAGTTCAATCCCTAGTGGTGTCATAGGTTAAACTCCTTGTGGAATTGAGGTATATGGTGGGAATTTGTAATATCCAGAAGAAGTTGCTCGTTTATGGTAAACTCTGTTTCCACTTCGCAGGGTCTCTATGGACAATGATAGTTGCCATGATTGTACACTGATCAAGGTATAATTCCTCAAAATAACTAATTAATTCTAACATTTTTCATGGCCTCATTTTGAGTCTTGATTTGCTATCTGAAGGAAACCTAGCCACTGGAATTTTAAGTCACTTGTATCCTGTGGTTTTTTGTAGACCAAAAAAAAAAAAAAAGGTGCAGCGATGTTTTCTACCTAACCTAACATCATTGAATTTAACTTATTGGTCTTCAATCAATTCTGACACATTTTCAAGATTGCCTACGGTTAACTTTTTCAGATACTATCTTTAGCAATATTTTCTTTACTAAAAAGTAGTTGCAAATTTGAACTGAAAATTTGTTAAGCATATAGAACTCCTGTTATAACCACTTTCAGTGAATTGCTAAATATTCTAAATATTTTCTTTAGTCCTAGTAAATTAGGCCAAACATTAGGCTGCCCAAAGTGGCCATCATCATTAGTTTATTTAATTTCCATGGTTTTCTCATGGAGATAAGTTGATGTAATATCGAATGGATTCTTTTTTACAATATTGCAGATTGATAGCGTCAATAAACCGGGAATTCTGCTGGAAGTCGTGCAAATCCTGACAGACCTTGACTTCATAATAACCAAAGCTTACATATCTTCTGATGGTAGTTGGTTTATGGATGGTACGTTTGCAATTGAATTCAAACTTGAACCAGCAATGCATTGGCGTATACTACATATATGTGCTTGTTCTTTCTTGTTTACTTAATTAAAATATGGTGATTTTTTGTTGCATATGCAAATATTGGGACAACCATGCAAACCTTGCCTACAACATACACATTCGTGCTTAGATGTAACAGAAAATTCCATATTAAAAATTATAGTTAATATGTTTTGTTAATGCAATGAACAGTATTTCATGTCACGGATCAGCAAGGAAAAAAGATAACAGACAACAAAATTATTGACTTTATTGAAAAGGTATACATCTTCTTTCTCCTCGATTTTTATCTGACATGCTTTTAATAATATATGGTAGCAATGCTTTTAGTAGGCTTTATCTTTGTTTTGGAAAAGAAACCTAAGTATATGGTAGCATGATTTACCAATTCTTATTTTTGTTCTTTCAAATGCATTGATATGAGTTGAAACCAGTTAAGCACTACGCCCGTCTCCCCTTTTGAGTGTGTAATGCACTTACAATCTTTGGACAGAATTTATAAACACAGCTAGGAACATCCAAACACAGTAGAAATTCCCTTACTGATAGTGTTCATAGTTCTAAAAGAAACAGTTGATTGAGTTCCTGCTAGTATCTACCTGCTATTTCCTAAACAGACTCTAAATATCAATTGGATGATTTAATTATATTCTATAATTACATAAAGCAGAATCGCACCCTTGTATCAACTAGTTGTGAACATTTAAATAGGCTCTAGGACCAAAGGGCCGCAAGAGCCCAGAAGGTGTGAAGAGTTGGGAAGGCAAACGGGTTGGCATTCACTCCATTGGTGATCATACAGCCATTGAGCTCATTGGTCGGGACCGTCCAGGTCTTTTGTCTGAGATATCAGCTGTCCTGGCGAGCTTCCAATTCAATGTGATTGCAGCTGAAGTTTGGACTCATAACAGGCGAATAGCATGTGTACTTTATGTCAATGATGCAACAAACCAAGGTCTGGATGATGATTCAAAAAGATTGTCTCTTATTGACGAGAAGCTCAACCACATCCTTCGTGGTTGTGAGGATGATGAGAATGTGGCCCGGACCAGTTTCTCCATGGGTTTCACCTTCACCCACATGGACAGAAGGCTCCACCAAATGTTGTTTGCTGATAGGGATTATGAGAGTGCTGGTGGAGTAACAACAGCAACAAATGTTGATTCTCCTCCCTCTTTCAGGCCCATTATCGAAATAGAACGTATTGAAGAAAAAGGCTACTCAGTGGTTAGTGTGAGATGCAAAGATCGGGCAAAATTGATGTTTGACATTGTCTGCACTCTTACTGACATGGAATATGTTGTTTTTCATGCCTCCATCTCATCTGAAGGGCCATATGCTTCACAGGTATGCATACATCATTTATCGACAATAATATTCCATTCTTTATTTTATAGTTACTGATAACACAGACATGCTTTATTCATTTACAGTAATATTTTGAATTGGTCTTGTAAGCCAAATCCTTGGGTGTAGTTTGTAAACAAATTGTCTGAATTTTCTGAAAAATAGGAAACAAAAATATTGCGAGGAATTTTTTAGTTCAGCTGGCCAAATGAAGGAATAAAGAAATTAGTTATCTTGTTCTTGTAAAAAGACTAAGGGTCTGCTCGTTTATTGTTTTTAAGAAGGCCTATAGAAAAATTTGAAAACAAGCAAAACCTAAAAACAAGATGAGGGTTTTGCAATTAAAACGGAAAAGGAGATTAGAAAGTATTTTCTAAAACCATAAAACCCTAATGTTTTGACCTTGAACACATCCTTTGTTTGCTTTTAATTTAACAGATTAAATCTATGTTTCTTTAAATTTGCTTCAATTTTATAGCTACTCTAGTTTGAATTGGTTTATTTGAGCTTATCTACTGGCATTAGCACTTGTGAAACTGTTTGGGAGAACTTATGAAAACATCTTATGACATGTTCAGAAGATGTTTTTAGCTTATTTTCATAGCCTCTCCAAGATAGTTTATGAGAACAACTTATAGCTTATACAAAAACAATTAACTTTATTATAATAAGTGCTTATGTTATAAGCAGAAGATTAAGTTGTTTATCCCAACAGGGACTAATACTATGTTTGAAGTATGTAGTAAGGGAGGTAACAGAAGTCTTAGTTGAAAAAACTCAAACAAAATTAATTGACAAAATTTGAGGTAGAATGACAAAATGGAGAAATGTAGACTAAGTTGTTGATGTGGTAATTCTTAGGAGTACTTCATCAGGCACGTGGATGGATGCACACTTGACACTGAAGGGGAGAAAGAAAGGGTCATCAAATGCATTGAAGCAGCTATTCAAAGAAGAGTAAGCGAGGTAATGTACGATTTAATTTTTATTTTTTATGCTACTTTAACCATTACTAAAATAGACAAGGATGAACTTCTGGTTATGGAACTTGGTTAGTGACTTAATGTTTCTCTTGGCATGTATTCCCCATAGCTTCATATGTGTTCTTCTAGCTGACGTCAGCGATCTACTATTCTTTCTTTTCTTCTCATTTTCTTTAGCAGAAAGTCTTCTGAGTTTGACCAAATTAATACATTTTGAACCTGCAGCTATCTGCTTGTTTTGTTGCGAATGGTACGGTATACATACATGGTGATAAGTTCCACTCAGATTGTATCTGACCATCGTATCCACCAATGAATCGGTGACGGTTGATGGTCTTTTGTCTTCACTAGAGCTTAAGAATCCTTATGCTCCACACGTAATATCATTCAAATCCCTATAACCTCAAAATATGAAGGAAAAAAAATGTTAAAATATATTCTTGTCCTTATAAAATCATGACTGTCTAACTTTAGTCCTTATCAATTTTTAATTCATTTTTAATCTCTATATTTAACAAAAACTGCATAATTTTATTAGTTTTCGACAGGACTAAAACCACAGTTTTTATATCTTACAGGACTATAGATGGTAAAAGTTTTATAGACTAAGGTTAAACTATCGTGATTTTGTAGGGACTATAATTAATTAATGGTGTTGAATGTGACAAATGCATGTCACCATCAGTCATATTTATGCTCGACCAGCTATCATGCATATTATTATCATCTTCTAAATTTTACATTAATTATTCTTCATACAATAAATAAATAAATAAATTAATGAATGATGAAGAAACTAACACACAAGATGATAGTGTCGTTACCATTGATCCTCTGGGTGATGGACACAGGGTGTGAGCCTTGAGCTGTGTGCAAAGGATAGAGTGGGCTTGCTGTCTGAAGTGACTAGGATTCTACGAGAGAACGGCTTAACAGTTTGTAGGGCAGGTGTGTCAACCATAGGAGAGAAAGGACTAAATGTTTTCTATGTGAGAGATGCATATGGAAACCCTGTGGATATGAACATCATTGAAGCACTGCGTAAAGAAATTGGCCAGACTGTGATGGTCAATGTGAAGAAGGTACCAGCCAACACCAAAGCACCAGAAACCTCTCGAGGATGGGCTAGAGTAAGCTTCTTCTTTGGGAACTTGTTGGAAAGGTTCTTGACTTAA

Protein sequence

>MS.gene93159.t1

MAKVCWPYFDPEYENFSNRINPPRVSMDNDSCHDCTLIKIDSVNKPGILLEVVQILTDLDFIITKAYISSDGSWFMDVFHVTDQQGKKITDNKIIDFIEKALGPKGRKSPEGVKSWEGKRVGIHSIGDHTAIELIGRDRPGLLSEISAVLASFQFNVIAAEVWTHNRRIACVLYVNDATNQGLDDDSKRLSLIDEKLNHILRGCEDDENVARTSFSMGFTFTHMDRRLHQMLFADRDYESAGGVTTATNVDSPPSFRPIIEIERIEEKGYSVVSVRCKDRAKLMFDIVCTLTDMEYVVFHASISSEGPYASQEYFIRHVDGCTLDTEGEKERVIKCIEAAIQRRVSEGVSLELCAKDRVGLLSEVTRILRENGLTVCRAGVSTIGEKGLNVFYVRDAYGNPVDMNIIEALRKEIGQTVMVNVKKVPANTKAPETSRGWARVSFFFGNLLERFLT