Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93412.t1 | XP_013469944.1 | 98.8 | 342 | 4 | 0 | 1 | 342 | 1 | 342 | 1.50E-190 | 675.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93412.t1 | Q9SUG3 | 71.6 | 342 | 93 | 2 | 3 | 342 | 11 | 350 | 5.1e-134 | 478.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93412.t1 | A0A072VQB8 | 98.8 | 342 | 4 | 0 | 1 | 342 | 1 | 342 | 1.1e-190 | 675.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050442 | MS.gene93412 | 0.81858 | 1.82E-52 | -1.69E-46 |
| MS.gene050719 | MS.gene93412 | 0.801993 | 6.93E-49 | -1.69E-46 |
| MS.gene050750 | MS.gene93412 | 0.801671 | 8.07E-49 | -1.69E-46 |
| MS.gene050953 | MS.gene93412 | 0.802692 | 4.97E-49 | -1.69E-46 |
| MS.gene051207 | MS.gene93412 | 0.805001 | 1.65E-49 | -1.69E-46 |
| MS.gene052190 | MS.gene93412 | 0.803152 | 4.00E-49 | -1.69E-46 |
| MS.gene052333 | MS.gene93412 | 0.84342 | 1.42E-58 | -1.69E-46 |
| MS.gene053166 | MS.gene93412 | 0.800553 | 1.37E-48 | -1.69E-46 |
| MS.gene054093 | MS.gene93412 | 0.805759 | 1.14E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene93412 | -0.82082 | 5.61E-53 | -1.69E-46 |
| MS.gene054405 | MS.gene93412 | 0.801018 | 1.10E-48 | -1.69E-46 |
| MS.gene054468 | MS.gene93412 | 0.824934 | 6.17E-54 | -1.69E-46 |
| MS.gene054559 | MS.gene93412 | 0.800244 | 1.58E-48 | -1.69E-46 |
| MS.gene055701 | MS.gene93412 | 0.813718 | 2.22E-51 | -1.69E-46 |
| MS.gene056087 | MS.gene93412 | 0.811149 | 8.09E-51 | -1.69E-46 |
| MS.gene056506 | MS.gene93412 | 0.827355 | 1.64E-54 | -1.69E-46 |
| MS.gene057026 | MS.gene93412 | 0.821772 | 3.38E-53 | -1.69E-46 |
| MS.gene059609 | MS.gene93412 | 0.849276 | 3.59E-60 | -1.69E-46 |
| MS.gene061114 | MS.gene93412 | -0.842737 | 2.15E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93412.t1 | MTR_1g105930 | 98.830 | 342 | 4 | 0 | 1 | 342 | 1 | 342 | 0.0 | 688 |
| MS.gene93412.t1 | MTR_1g105930 | 98.400 | 250 | 4 | 0 | 93 | 342 | 63 | 312 | 0.0 | 509 |
| MS.gene93412.t1 | MTR_5g005370 | 80.719 | 306 | 59 | 0 | 30 | 335 | 11 | 316 | 5.58e-175 | 488 |
| MS.gene93412.t1 | MTR_5g005370 | 80.456 | 307 | 60 | 0 | 30 | 336 | 11 | 317 | 4.77e-174 | 488 |
| MS.gene93412.t1 | MTR_5g005370 | 77.778 | 306 | 57 | 1 | 30 | 335 | 11 | 305 | 1.84e-164 | 461 |
| MS.gene93412.t1 | MTR_5g005370 | 80.142 | 282 | 56 | 0 | 54 | 335 | 7 | 288 | 2.58e-158 | 445 |
| MS.gene93412.t1 | MTR_5g005370 | 80.357 | 280 | 55 | 0 | 56 | 335 | 2 | 281 | 2.16e-157 | 442 |
| MS.gene93412.t1 | MTR_8g066720 | 43.827 | 324 | 160 | 7 | 32 | 340 | 8 | 324 | 1.22e-87 | 269 |
| MS.gene93412.t1 | MTR_4g105690 | 43.648 | 307 | 164 | 4 | 33 | 333 | 10 | 313 | 3.58e-85 | 260 |
| MS.gene93412.t1 | MTR_3g067725 | 27.586 | 319 | 201 | 12 | 26 | 319 | 155 | 468 | 6.38e-21 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93412.t1 | AT4G08170 | 71.221 | 344 | 95 | 2 | 1 | 342 | 9 | 350 | 2.78e-167 | 470 |
| MS.gene93412.t1 | AT4G33770 | 68.710 | 310 | 95 | 1 | 30 | 339 | 80 | 387 | 3.74e-148 | 423 |
| MS.gene93412.t1 | AT4G33770 | 66.780 | 295 | 92 | 2 | 45 | 339 | 6 | 294 | 1.32e-135 | 387 |
| MS.gene93412.t1 | AT4G08170 | 76.062 | 259 | 60 | 1 | 84 | 342 | 6 | 262 | 2.76e-135 | 385 |
| MS.gene93412.t1 | AT4G08170 | 76.682 | 223 | 50 | 1 | 120 | 342 | 1 | 221 | 1.86e-113 | 328 |
| MS.gene93412.t1 | AT4G08170 | 76.682 | 223 | 50 | 1 | 120 | 342 | 1 | 221 | 1.86e-113 | 328 |
| MS.gene93412.t1 | AT4G08170 | 76.682 | 223 | 50 | 1 | 120 | 342 | 1 | 221 | 1.86e-113 | 328 |
| MS.gene93412.t1 | AT4G08170 | 76.682 | 223 | 50 | 1 | 120 | 342 | 1 | 221 | 1.86e-113 | 328 |
| MS.gene93412.t1 | AT4G08170 | 76.682 | 223 | 50 | 1 | 120 | 342 | 1 | 221 | 1.86e-113 | 328 |
| MS.gene93412.t1 | AT4G33770 | 66.364 | 220 | 72 | 1 | 120 | 339 | 1 | 218 | 1.26e-94 | 281 |
| MS.gene93412.t1 | AT5G16760 | 44.089 | 313 | 166 | 4 | 29 | 335 | 7 | 316 | 8.94e-86 | 261 |
| MS.gene93412.t1 | AT2G43980 | 28.736 | 174 | 118 | 4 | 149 | 319 | 295 | 465 | 1.72e-15 | 77.8 |
Find 66 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTACACTTGTTCTGCTTT+AGG | 0.209814 | 1.1:+76040165 | None:intergenic |
| TTTCATCATTGAAGGATTTC+AGG | 0.216204 | 1.1:-76042096 | MS.gene93412:intron |
| GTAGATATGATTCGTGAATA+TGG | 0.249264 | 1.1:-76040376 | MS.gene93412:CDS |
| ATTGATATCAATTACTTTCC+TGG | 0.288993 | 1.1:-76040331 | MS.gene93412:intron |
| CTTGCAAGAGAAATGAAATT+TGG | 0.289856 | 1.1:+76044627 | None:intergenic |
| TCTTTAAGATTTATATTGTT+GGG | 0.323070 | 1.1:-76040786 | MS.gene93412:CDS |
| TATTGTTGGGGAATACATAA+AGG | 0.342629 | 1.1:-76040773 | MS.gene93412:CDS |
| CTCTTTAAGATTTATATTGT+TGG | 0.359704 | 1.1:-76040787 | MS.gene93412:CDS |
| ACACCCACCAAGACCTTTGT+TGG | 0.369643 | 1.1:-76040536 | MS.gene93412:CDS |
| CCAGCTTTGGTGACTTCATA+AGG | 0.370201 | 1.1:+76041627 | None:intergenic |
| AGCTCGCGTTTACTGATATT+AGG | 0.375570 | 1.1:+76040730 | None:intergenic |
| ATTTGACATTGTCTTGCATA+AGG | 0.382180 | 1.1:-76043271 | MS.gene93412:intron |
| CCTTATGAAGTCACCAAAGC+TGG | 0.387765 | 1.1:-76041627 | MS.gene93412:CDS |
| GGAATCTCACCGGCAATACT+AGG | 0.399683 | 1.1:+76040631 | None:intergenic |
| CGGCAACTTCAACCCAGCTT+TGG | 0.416268 | 1.1:+76041614 | None:intergenic |
| GATCTTGATCCTAGTATTGC+CGG | 0.427389 | 1.1:-76040640 | MS.gene93412:intron |
| CTACAAGAGTTTGTCAATCA+TGG | 0.430927 | 1.1:-76040912 | MS.gene93412:intron |
| TTCAGAGCTTGAACCTCCAC+TGG | 0.437347 | 1.1:-76040937 | MS.gene93412:CDS |
| GTAAAGACATGCTCGTAGTC+TGG | 0.437470 | 1.1:+76040203 | None:intergenic |
| ACTTCATAAGGAATAGTAGA+TGG | 0.444777 | 1.1:+76041639 | None:intergenic |
| AGCCTCTCCAACAAAGGTCT+TGG | 0.445162 | 1.1:+76040529 | None:intergenic |
| AAAAGAGCTTCGTCATAGAT+TGG | 0.446522 | 1.1:-76040503 | MS.gene93412:intron |
| TGGGTCAGAAAATTGTTGTT+GGG | 0.450840 | 1.1:-76044689 | MS.gene93412:CDS |
| CTCTCCAACAAAGGTCTTGG+TGG | 0.458592 | 1.1:+76040532 | None:intergenic |
| TTGGGTCAGAAAATTGTTGT+TGG | 0.460458 | 1.1:-76044690 | MS.gene93412:CDS |
| ATTTGTTCTTTCCAGTTGTT+AGG | 0.472300 | 1.1:-76043053 | MS.gene93412:intron |
| TAGATATGATTCGTGAATAT+GGG | 0.472467 | 1.1:-76040375 | MS.gene93412:CDS |
| GCTGCTGCACATGAAACTCT+TGG | 0.473192 | 1.1:+76040679 | None:intergenic |
| TGTAAATGTTGAATTGCATC+AGG | 0.481257 | 1.1:+76042040 | None:intergenic |
| CAAATTTCATTTCTCTTGCA+AGG | 0.481455 | 1.1:-76044626 | MS.gene93412:intron |
| CACATGAAACTCTTGGAAAA+CGG | 0.483083 | 1.1:+76040686 | None:intergenic |
| TTATGCAAGACAATGTCAAA+TGG | 0.500174 | 1.1:+76043273 | None:intergenic |
| CACCAAGACCTTTGTTGGAG+AGG | 0.502650 | 1.1:-76040531 | MS.gene93412:CDS |
| TCCAGTTGTTAGGCGAGGAA+TGG | 0.516509 | 1.1:-76043043 | MS.gene93412:intron |
| GGATCAAGAACGAATACATC+GGG | 0.519070 | 1.1:+76042064 | None:intergenic |
| CCACATCTTGAAGCATGGAT+TGG | 0.521285 | 1.1:+76042011 | None:intergenic |
| CATCTTGAAGCATGGATTGG+CGG | 0.525990 | 1.1:+76042014 | None:intergenic |
| CTTTAAGATTTATATTGTTG+GGG | 0.527390 | 1.1:-76040785 | MS.gene93412:CDS |
| GCTGGGTTGAAGTTGCCGTT+AGG | 0.530540 | 1.1:-76041609 | MS.gene93412:intron |
| TTTGCAAGCCTCTCCAACAA+AGG | 0.530921 | 1.1:+76040523 | None:intergenic |
| ATCCACCACATCTTGAAGCA+TGG | 0.535346 | 1.1:+76042006 | None:intergenic |
| CCAATCCATGCTTCAAGATG+TGG | 0.557398 | 1.1:-76042011 | MS.gene93412:CDS |
| TTCTTTCCAGTTGTTAGGCG+AGG | 0.558531 | 1.1:-76043048 | MS.gene93412:intron |
| TATGTGTAATGCAGGAGCAA+GGG | 0.560921 | 1.1:-76043345 | MS.gene93412:intron |
| CTTATGAAGTCACCAAAGCT+GGG | 0.565266 | 1.1:-76041626 | MS.gene93412:CDS |
| TTATGTGTAATGCAGGAGCA+AGG | 0.565876 | 1.1:-76043346 | MS.gene93412:intron |
| AGTTGCAAAACCTCTAGTTG+TGG | 0.567026 | 1.1:-76041012 | MS.gene93412:CDS |
| ATCCATGCTTCAAGATGTGG+TGG | 0.574463 | 1.1:-76042008 | MS.gene93412:CDS |
| CGCGAGCTATCAAAAGTCGC+AGG | 0.584140 | 1.1:-76040715 | MS.gene93412:CDS |
| TCTCCAACAAAGGTCTTGGT+GGG | 0.597564 | 1.1:+76040533 | None:intergenic |
| GCACTGCCATCCACAACTAG+AGG | 0.603312 | 1.1:+76041002 | None:intergenic |
| AACAAGCCACTGTCAGAACA+AGG | 0.605835 | 1.1:-76043297 | MS.gene93412:CDS |
| ATGTGTAATGCAGGAGCAAG+GGG | 0.610801 | 1.1:-76043344 | MS.gene93412:intron |
| GCAAAACCTCTAGTTGTGGA+TGG | 0.613529 | 1.1:-76041008 | MS.gene93412:CDS |
| GGAATGGCGAGAGATTATTG+AGG | 0.614262 | 1.1:-76043027 | MS.gene93412:intron |
| CTAAACTTATCTGAGTGCAA+TGG | 0.614593 | 1.1:-76041983 | MS.gene93412:intron |
| AGAAGTGATGGCGAAATCTG+AGG | 0.629932 | 1.1:-76044730 | MS.gene93412:CDS |
| AATGGACCTTGTTCTGACAG+TGG | 0.636759 | 1.1:+76043291 | None:intergenic |
| AACTCTTGTAGAACCAGTGG+AGG | 0.639928 | 1.1:+76040924 | None:intergenic |
| AGGATCAAGAACGAATACAT+CGG | 0.641347 | 1.1:+76042063 | None:intergenic |
| ACAAACTCTTGTAGAACCAG+TGG | 0.644820 | 1.1:+76040921 | None:intergenic |
| TTGTAATAACTAGCTGACGA+GGG | 0.649097 | 1.1:+76041673 | None:intergenic |
| GATTCGTGAATATGGGACGA+AGG | 0.655124 | 1.1:-76040368 | MS.gene93412:CDS |
| GGGAATACATAAAGGTTGTG+AGG | 0.657084 | 1.1:-76040765 | MS.gene93412:CDS |
| TTTGTAATAACTAGCTGACG+AGG | 0.667968 | 1.1:+76041672 | None:intergenic |
| AAATGTTGAATTGCATCAGG+AGG | 0.678092 | 1.1:+76042043 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATGTAATTACTAATT+AGG | - | chr1.1:76042725-76042744 | MS.gene93412:intron | 10.0% |
| !! | AAATATGTAATTACTAATTA+GGG | - | chr1.1:76042726-76042745 | MS.gene93412:intron | 10.0% |
| !!! | AATTAGTAATTACATATTTT+CGG | + | chr1.1:76042725-76042744 | None:intergenic | 10.0% |
| !!! | TTTTTTAACTTTTTGTTTTA+CGG | - | chr1.1:76044661-76044680 | MS.gene93412:CDS | 10.0% |
| !! | AAATTTGAAAGGAAAAAAAA+AGG | + | chr1.1:76043882-76043901 | None:intergenic | 15.0% |
| !! | TATTGTAATTTATCTATTCA+TGG | + | chr1.1:76042632-76042651 | None:intergenic | 15.0% |
| !! | TTAAAAATAGGTTTCATTTA+TGG | - | chr1.1:76041746-76041765 | MS.gene93412:intron | 15.0% |
| !! | TTAATCTAAATAATTTGGTT+AGG | - | chr1.1:76042216-76042235 | MS.gene93412:intron | 15.0% |
| !!! | AACTTAAGCTATATTTTTAT+CGG | - | chr1.1:76041432-76041451 | MS.gene93412:intron | 15.0% |
| !!! | TTAAAGTGATTTTTTTTTAG+TGG | - | chr1.1:76040395-76040414 | MS.gene93412:CDS | 15.0% |
| !!! | TTTGTTTTCCTTTTTTATTT+GGG | - | chr1.1:76044089-76044108 | MS.gene93412:intron | 15.0% |
| !!! | TTTTGTTTTCCTTTTTTATT+TGG | - | chr1.1:76044088-76044107 | MS.gene93412:intron | 15.0% |
| !! | AAAACATAAAAAGTAAAACG+TGG | + | chr1.1:76040377-76040396 | None:intergenic | 20.0% |
| !! | AAGAACAAAAAGAAAATCAT+TGG | + | chr1.1:76040334-76040353 | None:intergenic | 20.0% |
| !! | AAGGTTAAGTAATAAAACTT+TGG | + | chr1.1:76042680-76042699 | None:intergenic | 20.0% |
| !! | AATCGTTAGTATTATTAGTT+TGG | - | chr1.1:76042021-76042040 | MS.gene93412:CDS | 20.0% |
| !! | ATCAAATTTCTTAAAGAACA+AGG | - | chr1.1:76042377-76042396 | MS.gene93412:intron | 20.0% |
| !! | CAACTTGAAAAAATGAAAAA+AGG | + | chr1.1:76043148-76043167 | None:intergenic | 20.0% |
| !! | CATTTGGTATATAACATTAT+TGG | + | chr1.1:76042433-76042452 | None:intergenic | 20.0% |
| !! | GTATATTATATACTAGCTAT+TGG | - | chr1.1:76043408-76043427 | MS.gene93412:intron | 20.0% |
| !! | TGTGGTTAATCTAAATAATT+TGG | - | chr1.1:76042211-76042230 | MS.gene93412:intron | 20.0% |
| !!! | AAACTCTGTTTTTCTTTTTT+TGG | - | chr1.1:76040507-76040526 | MS.gene93412:CDS | 20.0% |
| !!! | ATCGTTAGTATTATTAGTTT+GGG | - | chr1.1:76042022-76042041 | MS.gene93412:CDS | 20.0% |
| !!! | TAATTTTTTATGAGAATCAG+AGG | - | chr1.1:76040916-76040935 | MS.gene93412:CDS | 20.0% |
| !!! | TCAACTATTTTTGTACTTTT+TGG | - | chr1.1:76043105-76043124 | MS.gene93412:intron | 20.0% |
| !!! | TTCTTCTTTTATAACATTCA+TGG | - | chr1.1:76041988-76042007 | MS.gene93412:CDS | 20.0% |
| ! | AAAACTTACATGACTTTACA+TGG | - | chr1.1:76040999-76041018 | MS.gene93412:CDS | 25.0% |
| ! | AAATCCTTCAATGATGAAAA+AGG | + | chr1.1:76042819-76042838 | None:intergenic | 25.0% |
| ! | AAATTATTAACACTCAACAG+TGG | - | chr1.1:76041385-76041404 | MS.gene93412:intron | 25.0% |
| ! | AAGAAAAACAGAGTTTACAA+TGG | + | chr1.1:76040503-76040522 | None:intergenic | 25.0% |
| ! | AATAATACATTAAGTACACG+AGG | - | chr1.1:76042531-76042550 | MS.gene93412:intron | 25.0% |
| ! | AATCCTTCAATGATGAAAAA+GGG | + | chr1.1:76042818-76042837 | None:intergenic | 25.0% |
| ! | AGTTGAAATGTTTCATCTTA+TGG | + | chr1.1:76044337-76044356 | None:intergenic | 25.0% |
| ! | ATCTATAAAATAACCAGACA+CGG | + | chr1.1:76042459-76042478 | None:intergenic | 25.0% |
| ! | ATTGATATCAATTACTTTCC+TGG | - | chr1.1:76044585-76044604 | MS.gene93412:intron | 25.0% |
| ! | ATTGTTCATAAGAAAGATAC+CGG | - | chr1.1:76040850-76040869 | MS.gene93412:intron | 25.0% |
| ! | CAAATCAATATTGTCAACTA+TGG | + | chr1.1:76041298-76041317 | None:intergenic | 25.0% |
| ! | CTAAAAATTATGTGTAATGC+AGG | - | chr1.1:76041563-76041582 | MS.gene93412:intron | 25.0% |
| ! | CTAAATAGTAAACCAATCTT+TGG | + | chr1.1:76043742-76043761 | None:intergenic | 25.0% |
| ! | TAAATAATTTGGTTAGGCAT+TGG | - | chr1.1:76042222-76042241 | MS.gene93412:intron | 25.0% |
| ! | TAGATATGATTCGTGAATAT+GGG | - | chr1.1:76044541-76044560 | MS.gene93412:intron | 25.0% |
| ! | TTTGCAACTGAAAATTTGAA+AGG | + | chr1.1:76043893-76043912 | None:intergenic | 25.0% |
| !! | AAAAAGTCAAATTTCTGAAG+AGG | + | chr1.1:76042568-76042587 | None:intergenic | 25.0% |
| !! | ATAACAGTGTTGTTAAATAG+CGG | - | chr1.1:76043463-76043482 | MS.gene93412:intron | 25.0% |
| !! | CATAGTTGACAATATTGATT+TGG | - | chr1.1:76041296-76041315 | MS.gene93412:intron | 25.0% |
| !! | CTGCATTACACATAATTTTT+AGG | + | chr1.1:76041565-76041584 | None:intergenic | 25.0% |
| !! | GTAATAAAACTTTGGAAGAA+AGG | + | chr1.1:76042672-76042691 | None:intergenic | 25.0% |
| !! | TACAAGAAATCTAAAAGTGT+CGG | + | chr1.1:76040696-76040715 | None:intergenic | 25.0% |
| !! | TATAATTTGTCTTTGTGAGA+TGG | - | chr1.1:76040893-76040912 | MS.gene93412:intron | 25.0% |
| !! | TTCCTTGTAATTTTAAATCC+CGG | + | chr1.1:76040872-76040891 | None:intergenic | 25.0% |
| !! | TTGACAACATTTTGTACAAA+TGG | + | chr1.1:76043547-76043566 | None:intergenic | 25.0% |
| !!! | AAGTGATTTTTTTTTAGTGG+TGG | - | chr1.1:76040398-76040417 | MS.gene93412:intron | 25.0% |
| !!! | AATATTGATTTGGATAGTCA+AGG | - | chr1.1:76041306-76041325 | MS.gene93412:intron | 25.0% |
| !!! | AGTGATTTTTTTTTAGTGGT+GGG | - | chr1.1:76040399-76040418 | MS.gene93412:intron | 25.0% |
| !!! | ATTTTTATCGGTTCAATGTT+TGG | - | chr1.1:76041444-76041463 | MS.gene93412:intron | 25.0% |
| !!! | CTTTTGTTGTTACTTTTTGT+CGG | - | chr1.1:76040532-76040551 | MS.gene93412:CDS | 25.0% |
| !!! | GTTAACTACTGTTGTTTTAT+AGG | - | chr1.1:76043208-76043227 | MS.gene93412:intron | 25.0% |
| !!! | TTGTTTTATTAGCCAAAGAT+TGG | - | chr1.1:76043727-76043746 | MS.gene93412:intron | 25.0% |
| AAAACCTTGTTGCTAAATGA+GGG | + | chr1.1:76041130-76041149 | None:intergenic | 30.0% | |
| AATAACACACAGAATGATTG+CGG | + | chr1.1:76044050-76044069 | None:intergenic | 30.0% | |
| AATCAAAGATACACACCTAA+CGG | + | chr1.1:76043325-76043344 | None:intergenic | 30.0% | |
| AATCTTCTGATTATCCTGAT+TGG | - | chr1.1:76043795-76043814 | MS.gene93412:intron | 30.0% | |
| AATTTCTTAAAGAACAAGGC+TGG | - | chr1.1:76042381-76042400 | MS.gene93412:intron | 30.0% | |
| ACAGACAATAATTCGTTCTT+TGG | + | chr1.1:76042261-76042280 | None:intergenic | 30.0% | |
| ACTATCACAATAATATGGCA+TGG | - | chr1.1:76042352-76042371 | MS.gene93412:intron | 30.0% | |
| ACTTCATAAGGAATAGTAGA+TGG | + | chr1.1:76043280-76043299 | None:intergenic | 30.0% | |
| ACTTGTTTGAATACTTGGTT+TGG | + | chr1.1:76042178-76042197 | None:intergenic | 30.0% | |
| AGATATAATGAAAGCTGCAT+CGG | - | chr1.1:76042479-76042498 | MS.gene93412:intron | 30.0% | |
| ATATCCGAATGATACAAACA+AGG | + | chr1.1:76043695-76043714 | None:intergenic | 30.0% | |
| ATCCTTCAATGATGAAAAAG+GGG | + | chr1.1:76042817-76042836 | None:intergenic | 30.0% | |
| ATCTATTCATGGAACTATTC+AGG | + | chr1.1:76042621-76042640 | None:intergenic | 30.0% | |
| ATCTTCTGATTATCCTGATT+GGG | - | chr1.1:76043796-76043815 | MS.gene93412:intron | 30.0% | |
| ATTTGACATTGTCTTGCATA+AGG | - | chr1.1:76041645-76041664 | MS.gene93412:CDS | 30.0% | |
| ATTTGTTCTTTCCAGTTGTT+AGG | - | chr1.1:76041863-76041882 | MS.gene93412:intron | 30.0% | |
| CAAAATTTATGCTCAACCTT+TGG | - | chr1.1:76040789-76040808 | MS.gene93412:CDS | 30.0% | |
| CAAATTTCATTTCTCTTGCA+AGG | - | chr1.1:76040290-76040309 | MS.gene93412:intron | 30.0% | |
| CAGACAATAATTCGTTCTTT+GGG | + | chr1.1:76042260-76042279 | None:intergenic | 30.0% | |
| CCATCAAAATACAAACTTCA+TGG | + | chr1.1:76042776-76042795 | None:intergenic | 30.0% | |
| CTTGCAAGAGAAATGAAATT+TGG | + | chr1.1:76040292-76040311 | None:intergenic | 30.0% | |
| CTTGTTTGAATACTTGGTTT+GGG | + | chr1.1:76042177-76042196 | None:intergenic | 30.0% | |
| GCTATGAATATTTGGAAGAA+AGG | + | chr1.1:76042699-76042718 | None:intergenic | 30.0% | |
| GTACAATCCTAAAACTTTCA+GGG | + | chr1.1:76043014-76043033 | None:intergenic | 30.0% | |
| GTAGATATGATTCGTGAATA+TGG | - | chr1.1:76044540-76044559 | MS.gene93412:intron | 30.0% | |
| TACAAACTTCATGGAGAATT+TGG | + | chr1.1:76042767-76042786 | None:intergenic | 30.0% | |
| TACAAGTACAATGTGAAAGT+AGG | + | chr1.1:76041938-76041957 | None:intergenic | 30.0% | |
| TACAATCCTAAAACTTTCAG+GGG | + | chr1.1:76043013-76043032 | None:intergenic | 30.0% | |
| TAGCGACTATCACAATAATA+TGG | - | chr1.1:76042347-76042366 | MS.gene93412:intron | 30.0% | |
| TATAACTTATCTGCATTCCA+TGG | - | chr1.1:76044612-76044631 | MS.gene93412:intron | 30.0% | |
| TCTCTAGACTAGAATATATC+TGG | - | chr1.1:76043367-76043386 | MS.gene93412:intron | 30.0% | |
| TGAAATGTTTCATCTTATGG+TGG | + | chr1.1:76044334-76044353 | None:intergenic | 30.0% | |
| TGCAATGTCCCAAATAAAAA+AGG | + | chr1.1:76044100-76044119 | None:intergenic | 30.0% | |
| TGTAAATGTTGAATTGCATC+AGG | + | chr1.1:76042879-76042898 | None:intergenic | 30.0% | |
| TGTACAATCCTAAAACTTTC+AGG | + | chr1.1:76043015-76043034 | None:intergenic | 30.0% | |
| TTATGCAAGACAATGTCAAA+TGG | + | chr1.1:76041646-76041665 | None:intergenic | 30.0% | |
| TTCTTGTAAACATACCAAAC+TGG | - | chr1.1:76040708-76040727 | MS.gene93412:CDS | 30.0% | |
| TTGTTCATAAGAAAGATACC+GGG | - | chr1.1:76040851-76040870 | MS.gene93412:intron | 30.0% | |
| TTTCATCATTGAAGGATTTC+AGG | - | chr1.1:76042820-76042839 | MS.gene93412:intron | 30.0% | |
| ! | ACAATTTTCTGACCCAAAAA+CGG | + | chr1.1:76040223-76040242 | None:intergenic | 30.0% |
| ! | ACGAATTATTGTCTGTCTTT+TGG | - | chr1.1:76042265-76042284 | MS.gene93412:intron | 30.0% |
| ! | AGAACCTTGTTTGTATCATT+CGG | - | chr1.1:76043688-76043707 | MS.gene93412:intron | 30.0% |
| ! | ATATCAAACAAGAGCACAAA+AGG | + | chr1.1:76041338-76041357 | None:intergenic | 30.0% |
| ! | ATATTGTCAACTATGGATTG+CGG | + | chr1.1:76041291-76041310 | None:intergenic | 30.0% |
| ! | ATATTTGAAACAACCCAATC+AGG | + | chr1.1:76043812-76043831 | None:intergenic | 30.0% |
| ! | CAAAGGTTGAGCATAAATTT+TGG | + | chr1.1:76040791-76040810 | None:intergenic | 30.0% |
| ! | TACCGGGATTTAAAATTACA+AGG | - | chr1.1:76040867-76040886 | MS.gene93412:intron | 30.0% |
| ! | TTGACTCTTGATCTTTTGAT+TGG | - | chr1.1:76041056-76041075 | MS.gene93412:intron | 30.0% |
| ! | TTGTTTGAATACTTGGTTTG+GGG | + | chr1.1:76042176-76042195 | None:intergenic | 30.0% |
| !! | CACATAATTTTTAGGCATTC+AGG | + | chr1.1:76041557-76041576 | None:intergenic | 30.0% |
| !! | CCATGAAGTTTGTATTTTGA+TGG | - | chr1.1:76042773-76042792 | MS.gene93412:intron | 30.0% |
| !! | GGTAATCTTGTTATTGTCTT+TGG | - | chr1.1:76040741-76040760 | MS.gene93412:CDS | 30.0% |
| !! | TACATGGTTCAAAGTTTTGA+TGG | - | chr1.1:76041514-76041533 | MS.gene93412:intron | 30.0% |
| !! | TTATGGTTTTGCTGAATTTG+TGG | - | chr1.1:76041763-76041782 | MS.gene93412:intron | 30.0% |
| !!! | GAATTTTTTTGGAATCTCAC+CGG | + | chr1.1:76044298-76044317 | None:intergenic | 30.0% |
| !!! | GTGATTTTTTTTTAGTGGTG+GGG | - | chr1.1:76040400-76040419 | MS.gene93412:intron | 30.0% |
| !!! | TTTTTTATTTGGGACATTGC+AGG | - | chr1.1:76044099-76044118 | MS.gene93412:intron | 30.0% |
| AAAAGAGCTTCGTCATAGAT+TGG | - | chr1.1:76044413-76044432 | MS.gene93412:intron | 35.0% | |
| AAATGTTGAATTGCATCAGG+AGG | + | chr1.1:76042876-76042895 | None:intergenic | 35.0% | |
| AATGTTTCATCTTATGGTGG+TGG | + | chr1.1:76044331-76044350 | None:intergenic | 35.0% | |
| ACCAAGTATTCAAACAAGTG+AGG | - | chr1.1:76042179-76042198 | MS.gene93412:intron | 35.0% | |
| AGGATCAAGAACGAATACAT+CGG | + | chr1.1:76042856-76042875 | None:intergenic | 35.0% | |
| CACATGAAACTCTTGGAAAA+CGG | + | chr1.1:76044233-76044252 | None:intergenic | 35.0% | |
| CTAAACTTATCTGAGTGCAA+TGG | - | chr1.1:76042933-76042952 | MS.gene93412:intron | 35.0% | |
| CTACAAGAGTTTGTCAATCA+TGG | - | chr1.1:76044004-76044023 | MS.gene93412:intron | 35.0% | |
| CTGTGTAGTGTATTATTTGC+TGG | - | chr1.1:76040453-76040472 | MS.gene93412:intron | 35.0% | |
| GAAAACCTTGTTGCTAAATG+AGG | + | chr1.1:76041131-76041150 | None:intergenic | 35.0% | |
| GCAGATAAGTTATACTTACC+AGG | + | chr1.1:76044606-76044625 | None:intergenic | 35.0% | |
| GTATTAGTAAATCATCGCCT+AGG | + | chr1.1:76044480-76044499 | None:intergenic | 35.0% | |
| TACCAAGAAACAAACCAGTT+TGG | + | chr1.1:76040725-76040744 | None:intergenic | 35.0% | |
| TATTCATGGAACTATTCAGG+AGG | + | chr1.1:76042618-76042637 | None:intergenic | 35.0% | |
| TCCTCACTTGTTTGAATACT+TGG | + | chr1.1:76042183-76042202 | None:intergenic | 35.0% | |
| TCTATGCAAGAATGCTATAG+AGG | + | chr1.1:76041245-76041264 | None:intergenic | 35.0% | |
| TCTGATCATGATTCATGATG+AGG | + | chr1.1:76042138-76042157 | None:intergenic | 35.0% | |
| TCTTACACTTGTTCTGCTTT+AGG | + | chr1.1:76044754-76044773 | None:intergenic | 35.0% | |
| TGCAACCATATTTCTTTCCT+AGG | - | chr1.1:76044460-76044479 | MS.gene93412:intron | 35.0% | |
| TTCGGTGAGCTATGAATATT+TGG | + | chr1.1:76042707-76042726 | None:intergenic | 35.0% | |
| TTGAACCATGTATTCAACCA+AGG | + | chr1.1:76041506-76041525 | None:intergenic | 35.0% | |
| TTGAGCTACAGACATTACAT+CGG | + | chr1.1:76040645-76040664 | None:intergenic | 35.0% | |
| TTGATTTCTGTCATAGACCA+TGG | + | chr1.1:76044632-76044651 | None:intergenic | 35.0% | |
| TTGGGTCAGAAAATTGTTGT+TGG | - | chr1.1:76040226-76040245 | MS.gene93412:intron | 35.0% | |
| TTGTAATAACTAGCTGACGA+GGG | + | chr1.1:76043246-76043265 | None:intergenic | 35.0% | |
| TTGTCAAATAGCAGCTATAG+CGG | - | chr1.1:76043560-76043579 | MS.gene93412:intron | 35.0% | |
| TTTGTAATAACTAGCTGACG+AGG | + | chr1.1:76043247-76043266 | None:intergenic | 35.0% | |
| TTTGTACAAATGGCATATCG+TGG | + | chr1.1:76043537-76043556 | None:intergenic | 35.0% | |
| ! | AATGAGGGCATAAATGATTG+CGG | + | chr1.1:76041115-76041134 | None:intergenic | 35.0% |
| ! | ATTTTTCCATACCCTGCATT+CGG | + | chr1.1:76044692-76044711 | None:intergenic | 35.0% |
| ! | TGGGTCAGAAAATTGTTGTT+GGG | - | chr1.1:76040227-76040246 | MS.gene93412:intron | 35.0% |
| !! | ATAATTTGGTTAGGCATTGG+TGG | - | chr1.1:76042225-76042244 | MS.gene93412:intron | 35.0% |
| !! | CAAGTGAGGATTTACTTTTG+TGG | - | chr1.1:76042193-76042212 | MS.gene93412:intron | 35.0% |
| !! | CAAGTTGATTATGTATCGCA+TGG | - | chr1.1:76043161-76043180 | MS.gene93412:intron | 35.0% |
| !! | CAATGTATGAGTTTTGACCT+CGG | + | chr1.1:76040834-76040853 | None:intergenic | 35.0% |
| !! | TACCAAACTGGTTTGTTTCT+TGG | - | chr1.1:76040720-76040739 | MS.gene93412:CDS | 35.0% |
| !! | TGTTTGAATACTTGGTTTGG+GGG | + | chr1.1:76042175-76042194 | None:intergenic | 35.0% |
| !! | TTCCCCTTTTTCATCATTGA+AGG | - | chr1.1:76042812-76042831 | MS.gene93412:intron | 35.0% |
| !!! | CTACTGTTGTTTTATAGGCA+AGG | - | chr1.1:76043213-76043232 | MS.gene93412:intron | 35.0% |
| !!! | TGTATTTTGATGGAGCTGAT+TGG | - | chr1.1:76042783-76042802 | MS.gene93412:intron | 35.0% |
| !!! | TGTTGTTTTATAGGCAAGGT+TGG | - | chr1.1:76043217-76043236 | MS.gene93412:intron | 35.0% |
| ACAAACTCTTGTAGAACCAG+TGG | + | chr1.1:76043998-76044017 | None:intergenic | 40.0% | |
| AGCTCGCGTTTACTGATATT+AGG | + | chr1.1:76044189-76044208 | None:intergenic | 40.0% | |
| AGTTGCAAAACCTCTAGTTG+TGG | - | chr1.1:76043904-76043923 | MS.gene93412:intron | 40.0% | |
| ATAATGAAAGCTGCATCGGA+GGG | - | chr1.1:76042483-76042502 | MS.gene93412:intron | 40.0% | |
| CACTTCCTTGGTTGAATACA+TGG | - | chr1.1:76041498-76041517 | MS.gene93412:intron | 40.0% | |
| CATCGCCTAGGAAAGAAATA+TGG | + | chr1.1:76044468-76044487 | None:intergenic | 40.0% | |
| CATGTATTCAACCAAGGAAG+TGG | + | chr1.1:76041500-76041519 | None:intergenic | 40.0% | |
| CATTAAGTACACGAGGAATC+TGG | - | chr1.1:76042538-76042557 | MS.gene93412:intron | 40.0% | |
| CGAAGAAGAAGAAGAAGTGA+TGG | - | chr1.1:76040174-76040193 | MS.gene93412:CDS | 40.0% | |
| CGTACATCTTGCTCTTGTAT+TGG | - | chr1.1:76043073-76043092 | MS.gene93412:intron | 40.0% | |
| CTAAAACTTTCAGGGGAGAT+TGG | + | chr1.1:76043006-76043025 | None:intergenic | 40.0% | |
| CTCAATATGGACAACTCCAA+AGG | + | chr1.1:76040808-76040827 | None:intergenic | 40.0% | |
| CTTATGAAGTCACCAAAGCT+GGG | - | chr1.1:76043290-76043309 | MS.gene93412:CDS | 40.0% | |
| GAATTGCAATGCCGTCTATA+GGG | - | chr1.1:76044501-76044520 | MS.gene93412:intron | 40.0% | |
| GATCTTGATCCTAGTATTGC+CGG | - | chr1.1:76044276-76044295 | MS.gene93412:intron | 40.0% | |
| GGATCAAGAACGAATACATC+GGG | + | chr1.1:76042855-76042874 | None:intergenic | 40.0% | |
| GGGAATACATAAAGGTTGTG+AGG | - | chr1.1:76044151-76044170 | MS.gene93412:intron | 40.0% | |
| TATAATGAAAGCTGCATCGG+AGG | - | chr1.1:76042482-76042501 | MS.gene93412:intron | 40.0% | |
| TATGCCCTCATTTAGCAACA+AGG | - | chr1.1:76041123-76041142 | MS.gene93412:intron | 40.0% | |
| TATGTGTAATGCAGGAGCAA+GGG | - | chr1.1:76041571-76041590 | MS.gene93412:intron | 40.0% | |
| TGAATTGCAATGCCGTCTAT+AGG | - | chr1.1:76044500-76044519 | MS.gene93412:intron | 40.0% | |
| TGTGTAGTATCCAGAAGATG+TGG | + | chr1.1:76042083-76042102 | None:intergenic | 40.0% | |
| TTATGTGTAATGCAGGAGCA+AGG | - | chr1.1:76041570-76041589 | MS.gene93412:intron | 40.0% | |
| TTGACCTCGGATTCTCAATA+TGG | + | chr1.1:76040821-76040840 | None:intergenic | 40.0% | |
| TTGTCCATATTGAGAATCCG+AGG | - | chr1.1:76040814-76040833 | MS.gene93412:intron | 40.0% | |
| TTTGGGAGTTGAGTATGACA+TGG | - | chr1.1:76042039-76042058 | MS.gene93412:CDS | 40.0% | |
| ! | ACTATGGATTGCGGAAATAG+AGG | + | chr1.1:76041282-76041301 | None:intergenic | 40.0% |
| ! | ATGTTTGGAGTTACCACTGT+CGG | - | chr1.1:76041459-76041478 | MS.gene93412:intron | 40.0% |
| ! | CAATCTCCCCTGAAAGTTTT+AGG | - | chr1.1:76043004-76043023 | MS.gene93412:intron | 40.0% |
| ! | TTACGGTTTTTCCGAATGCA+GGG | - | chr1.1:76044678-76044697 | MS.gene93412:CDS | 40.0% |
| ! | TTTACGGTTTTTCCGAATGC+AGG | - | chr1.1:76044677-76044696 | MS.gene93412:CDS | 40.0% |
| ! | TTTATTTGGGACATTGCAGG+TGG | - | chr1.1:76044102-76044121 | MS.gene93412:intron | 40.0% |
| !! | TAGCAGCTATAGCGGATTAA+CGG | - | chr1.1:76043568-76043587 | MS.gene93412:intron | 40.0% |
| !! | TTTCATCTTATGGTGGTGGT+GGG | + | chr1.1:76044327-76044346 | None:intergenic | 40.0% |
| !!! | GTGGGAAAGGGGAATTTTTT+TGG | + | chr1.1:76044309-76044328 | None:intergenic | 40.0% |
| AACAAGCCACTGTCAGAACA+AGG | - | chr1.1:76041619-76041638 | MS.gene93412:CDS | 45.0% | |
| AACCAATCAATGCCGCAGAA+AGG | + | chr1.1:76043436-76043455 | None:intergenic | 45.0% | |
| AACTCTTGTAGAACCAGTGG+AGG | + | chr1.1:76043995-76044014 | None:intergenic | 45.0% | |
| AATGGACCTTGTTCTGACAG+TGG | + | chr1.1:76041628-76041647 | None:intergenic | 45.0% | |
| ACAAGCGAAGTCCCTATAGA+CGG | + | chr1.1:76044515-76044534 | None:intergenic | 45.0% | |
| ACGCTACAGCACAGATGATT+TGG | + | chr1.1:76041162-76041181 | None:intergenic | 45.0% | |
| ATACCAAATGCAACCGTGTC+TGG | - | chr1.1:76042443-76042462 | MS.gene93412:intron | 45.0% | |
| ATCCACCACATCTTGAAGCA+TGG | + | chr1.1:76042913-76042932 | None:intergenic | 45.0% | |
| ATCCAGAAGATGTGGTTGTC+CGG | + | chr1.1:76042075-76042094 | None:intergenic | 45.0% | |
| ATCCATGCTTCAAGATGTGG+TGG | - | chr1.1:76042908-76042927 | MS.gene93412:intron | 45.0% | |
| ATGTGTAATGCAGGAGCAAG+GGG | - | chr1.1:76041572-76041591 | MS.gene93412:intron | 45.0% | |
| ATTCAACCAAGGAAGTGGTC+AGG | + | chr1.1:76041495-76041514 | None:intergenic | 45.0% | |
| CCAATCCATGCTTCAAGATG+TGG | - | chr1.1:76042905-76042924 | MS.gene93412:intron | 45.0% | |
| CCACATCTTGAAGCATGGAT+TGG | + | chr1.1:76042908-76042927 | None:intergenic | 45.0% | |
| CCTTATGAAGTCACCAAAGC+TGG | - | chr1.1:76043289-76043308 | MS.gene93412:CDS | 45.0% | |
| CGCTACAGCACAGATGATTT+GGG | + | chr1.1:76041161-76041180 | None:intergenic | 45.0% | |
| GAGTATGACATGGAGGTGAT+TGG | - | chr1.1:76042049-76042068 | MS.gene93412:CDS | 45.0% | |
| GAGTCAGTGTTGTCAATAGC+AGG | + | chr1.1:76043646-76043665 | None:intergenic | 45.0% | |
| GATGACTAACTTCTGACAGC+TGG | - | chr1.1:76042505-76042524 | MS.gene93412:intron | 45.0% | |
| GATTCGTGAATATGGGACGA+AGG | - | chr1.1:76044548-76044567 | MS.gene93412:intron | 45.0% | |
| GCAAAACCTCTAGTTGTGGA+TGG | - | chr1.1:76043908-76043927 | MS.gene93412:intron | 45.0% | |
| GCTGTAGCGTAATAGTGTTG+TGG | - | chr1.1:76041172-76041191 | MS.gene93412:intron | 45.0% | |
| GGAATGGCGAGAGATTATTG+AGG | - | chr1.1:76041889-76041908 | MS.gene93412:intron | 45.0% | |
| GTAAAGACATGCTCGTAGTC+TGG | + | chr1.1:76044716-76044735 | None:intergenic | 45.0% | |
| GTGGTTGATCTCAGTAGAAG+TGG | - | chr1.1:76041404-76041423 | MS.gene93412:intron | 45.0% | |
| GTGTTGTCAATAGCAGGTCA+CGG | + | chr1.1:76043640-76043659 | None:intergenic | 45.0% | |
| TAACCAGACACGGTTGCATT+TGG | + | chr1.1:76042449-76042468 | None:intergenic | 45.0% | |
| TAGCTATTGGCACCTTTCTG+CGG | - | chr1.1:76043421-76043440 | MS.gene93412:intron | 45.0% | |
| TCTCCAACAAAGGTCTTGGT+GGG | + | chr1.1:76044386-76044405 | None:intergenic | 45.0% | |
| TGAAAGTAGGCTGAAGTGAG+TGG | + | chr1.1:76041925-76041944 | None:intergenic | 45.0% | |
| TTCTTTCCAGTTGTTAGGCG+AGG | - | chr1.1:76041868-76041887 | MS.gene93412:intron | 45.0% | |
| TTTGCAAGCCTCTCCAACAA+AGG | + | chr1.1:76044396-76044415 | None:intergenic | 45.0% | |
| ! | AGAAGTGATGGCGAAATCTG+AGG | - | chr1.1:76040186-76040205 | MS.gene93412:CDS | 45.0% |
| ! | CCAGCTTTGGTGACTTCATA+AGG | + | chr1.1:76043292-76043311 | None:intergenic | 45.0% |
| ! | GTTTTACCTGACCACTTCCT+TGG | - | chr1.1:76041486-76041505 | MS.gene93412:intron | 45.0% |
| ! | GTTTTTCCGAATGCAGGGTA+TGG | - | chr1.1:76044683-76044702 | MS.gene93412:CDS | 45.0% |
| ! | TGTTTGGAGTTACCACTGTC+GGG | - | chr1.1:76041460-76041479 | MS.gene93412:intron | 45.0% |
| !! | CATCTTGAAGCATGGATTGG+CGG | + | chr1.1:76042905-76042924 | None:intergenic | 45.0% |
| !! | CTAAAAGTGTCGGTCACGAA+TGG | + | chr1.1:76040686-76040705 | None:intergenic | 45.0% |
| !! | GTGAGTACGACACCGTTTTT+GGG | - | chr1.1:76040208-76040227 | MS.gene93412:CDS | 45.0% |
| !! | GTTTCATCTTATGGTGGTGG+TGG | + | chr1.1:76044328-76044347 | None:intergenic | 45.0% |
| !!! | TGTTTTTTTTTTTTAAAAAT+AGG | - | chr1.1:76041734-76041753 | MS.gene93412:intron | 5.0% |
| ACACCCACCAAGACCTTTGT+TGG | - | chr1.1:76044380-76044399 | MS.gene93412:intron | 50.0% | |
| AGCCTCTCCAACAAAGGTCT+TGG | + | chr1.1:76044390-76044409 | None:intergenic | 50.0% | |
| ATGACATGGAGGTGATTGGC+CGG | - | chr1.1:76042053-76042072 | MS.gene93412:CDS | 50.0% | |
| CACCAAGACCTTTGTTGGAG+AGG | - | chr1.1:76044385-76044404 | MS.gene93412:intron | 50.0% | |
| CTCTCCAACAAAGGTCTTGG+TGG | + | chr1.1:76044387-76044406 | None:intergenic | 50.0% | |
| GCTGCTGCACATGAAACTCT+TGG | + | chr1.1:76044240-76044259 | None:intergenic | 50.0% | |
| GCTGGCTGAGCTTATAGGTT+AGG | - | chr1.1:76042399-76042418 | MS.gene93412:intron | 50.0% | |
| GGAATCTCACCGGCAATACT+AGG | + | chr1.1:76044288-76044307 | None:intergenic | 50.0% | |
| GGGAGTTGAGTATGACATGG+AGG | - | chr1.1:76042042-76042061 | MS.gene93412:CDS | 50.0% | |
| TCCAGTTGTTAGGCGAGGAA+TGG | - | chr1.1:76041873-76041892 | MS.gene93412:intron | 50.0% | |
| TTCAGAGCTTGAACCTCCAC+TGG | - | chr1.1:76043979-76043998 | MS.gene93412:intron | 50.0% | |
| ! | ACAAGGCTGGCTGAGCTTAT+AGG | - | chr1.1:76042394-76042413 | MS.gene93412:intron | 50.0% |
| ! | GGTGAGTACGACACCGTTTT+TGG | - | chr1.1:76040207-76040226 | MS.gene93412:CDS | 50.0% |
| ! | GTTTGGAGTTACCACTGTCG+GGG | - | chr1.1:76041461-76041480 | MS.gene93412:intron | 50.0% |
| ! | TTTGGAGTTACCACTGTCGG+GGG | - | chr1.1:76041462-76041481 | MS.gene93412:intron | 50.0% |
| !! | AGCGGATTAACGGCGCTATA+GGG | - | chr1.1:76043578-76043597 | MS.gene93412:intron | 50.0% |
| !! | CACCTTTCTGCGGCATTGAT+TGG | - | chr1.1:76043431-76043450 | MS.gene93412:intron | 50.0% |
| !! | CTTATGGTGGTGGTGGGAAA+GGG | + | chr1.1:76044321-76044340 | None:intergenic | 50.0% |
| !! | TAGCGGATTAACGGCGCTAT+AGG | - | chr1.1:76043577-76043596 | MS.gene93412:intron | 50.0% |
| !! | TCTTATGGTGGTGGTGGGAA+AGG | + | chr1.1:76044322-76044341 | None:intergenic | 50.0% |
| !! | TTATGGTGGTGGTGGGAAAG+GGG | + | chr1.1:76044320-76044339 | None:intergenic | 50.0% |
| AGGTAAAACTCCCCCGACAG+TGG | + | chr1.1:76041475-76041494 | None:intergenic | 55.0% | |
| ATAGCAGCGCTACAGCACAG+TGG | - | chr1.1:76043488-76043507 | MS.gene93412:intron | 55.0% | |
| CGCGAGCTATCAAAAGTCGC+AGG | - | chr1.1:76044201-76044220 | MS.gene93412:intron | 55.0% | |
| CGGCAACTTCAACCCAGCTT+TGG | + | chr1.1:76043305-76043324 | None:intergenic | 55.0% | |
| GCACTGCCATCCACAACTAG+AGG | + | chr1.1:76043917-76043936 | None:intergenic | 55.0% | |
| GCCATTCCTCGCCTAACAAC+TGG | + | chr1.1:76041877-76041896 | None:intergenic | 55.0% | |
| TGTCGGTCACGAATGGAGCT+CGG | + | chr1.1:76040679-76040698 | None:intergenic | 55.0% | |
| ! | GCTGGGTTGAAGTTGCCGTT+AGG | - | chr1.1:76043307-76043326 | MS.gene93412:CDS | 55.0% |
| GGCCGGACAACCACATCTTC+TGG | - | chr1.1:76042070-76042089 | MS.gene93412:CDS | 60.0% | |
| GTCGGTCACGAATGGAGCTC+GGG | + | chr1.1:76040678-76040697 | None:intergenic | 60.0% | |
| TCGGTCACGAATGGAGCTCG+GGG | + | chr1.1:76040677-76040696 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 76040148 | 76044790 | 76040148 | ID=MS.gene93412 |
| chr1.1 | mRNA | 76040148 | 76044790 | 76040148 | ID=MS.gene93412.t1;Parent=MS.gene93412 |
| chr1.1 | exon | 76044627 | 76044790 | 76044627 | ID=MS.gene93412.t1.exon1;Parent=MS.gene93412.t1 |
| chr1.1 | CDS | 76044627 | 76044790 | 76044627 | ID=cds.MS.gene93412.t1;Parent=MS.gene93412.t1 |
| chr1.1 | exon | 76043272 | 76043353 | 76043272 | ID=MS.gene93412.t1.exon2;Parent=MS.gene93412.t1 |
| chr1.1 | CDS | 76043272 | 76043353 | 76043272 | ID=cds.MS.gene93412.t1;Parent=MS.gene93412.t1 |
| chr1.1 | exon | 76043028 | 76043060 | 76043028 | ID=MS.gene93412.t1.exon3;Parent=MS.gene93412.t1 |
| chr1.1 | CDS | 76043028 | 76043060 | 76043028 | ID=cds.MS.gene93412.t1;Parent=MS.gene93412.t1 |
| chr1.1 | exon | 76041984 | 76042104 | 76041984 | ID=MS.gene93412.t1.exon4;Parent=MS.gene93412.t1 |
| chr1.1 | CDS | 76041984 | 76042104 | 76041984 | ID=cds.MS.gene93412.t1;Parent=MS.gene93412.t1 |
| chr1.1 | exon | 76041610 | 76041708 | 76041610 | ID=MS.gene93412.t1.exon5;Parent=MS.gene93412.t1 |
| chr1.1 | CDS | 76041610 | 76041708 | 76041610 | ID=cds.MS.gene93412.t1;Parent=MS.gene93412.t1 |
| chr1.1 | exon | 76040913 | 76041032 | 76040913 | ID=MS.gene93412.t1.exon6;Parent=MS.gene93412.t1 |
| chr1.1 | CDS | 76040913 | 76041032 | 76040913 | ID=cds.MS.gene93412.t1;Parent=MS.gene93412.t1 |
| chr1.1 | exon | 76040641 | 76040817 | 76040641 | ID=MS.gene93412.t1.exon7;Parent=MS.gene93412.t1 |
| chr1.1 | CDS | 76040641 | 76040817 | 76040641 | ID=cds.MS.gene93412.t1;Parent=MS.gene93412.t1 |
| chr1.1 | exon | 76040504 | 76040559 | 76040504 | ID=MS.gene93412.t1.exon8;Parent=MS.gene93412.t1 |
| chr1.1 | CDS | 76040504 | 76040559 | 76040504 | ID=cds.MS.gene93412.t1;Parent=MS.gene93412.t1 |
| chr1.1 | exon | 76040332 | 76040416 | 76040332 | ID=MS.gene93412.t1.exon9;Parent=MS.gene93412.t1 |
| chr1.1 | CDS | 76040332 | 76040416 | 76040332 | ID=cds.MS.gene93412.t1;Parent=MS.gene93412.t1 |
| chr1.1 | exon | 76040148 | 76040239 | 76040148 | ID=MS.gene93412.t1.exon10;Parent=MS.gene93412.t1 |
| chr1.1 | CDS | 76040148 | 76040239 | 76040148 | ID=cds.MS.gene93412.t1;Parent=MS.gene93412.t1 |
| Gene Sequence |
| Protein sequence |
