Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93778.t1 | XP_003631075.2 | 98.3 | 173 | 3 | 0 | 1 | 173 | 1 | 173 | 3.10E-94 | 354.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93778.t1 | Q9XFK7 | 76.9 | 173 | 39 | 1 | 2 | 173 | 1 | 173 | 5.0e-77 | 288.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93778.t1 | G7LDA2 | 98.3 | 173 | 3 | 0 | 1 | 173 | 1 | 173 | 2.2e-94 | 354.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene98252 | MS.gene93778 | PPI |
| MS.gene51913 | MS.gene93778 | PPI |
| MS.gene034467 | MS.gene93778 | PPI |
| MS.gene51950 | MS.gene93778 | PPI |
| MS.gene000759 | MS.gene93778 | PPI |
| MS.gene35397 | MS.gene93778 | PPI |
| MS.gene042580 | MS.gene93778 | PPI |
| MS.gene43049 | MS.gene93778 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93778.t1 | MTR_8g106840 | 98.266 | 173 | 3 | 0 | 1 | 173 | 1 | 173 | 1.79e-125 | 350 |
| MS.gene93778.t1 | MTR_0020s0120 | 54.913 | 173 | 76 | 2 | 2 | 173 | 1 | 172 | 8.66e-65 | 196 |
| MS.gene93778.t1 | MTR_7g104460 | 52.874 | 174 | 81 | 1 | 1 | 173 | 1 | 174 | 1.51e-61 | 188 |
| MS.gene93778.t1 | MTR_0020s0120 | 53.757 | 173 | 71 | 3 | 2 | 173 | 1 | 165 | 1.66e-61 | 188 |
| MS.gene93778.t1 | MTR_2g086270 | 48.555 | 173 | 88 | 1 | 2 | 173 | 1 | 173 | 1.34e-56 | 176 |
| MS.gene93778.t1 | MTR_6g033040 | 52.381 | 168 | 78 | 2 | 1 | 167 | 1 | 167 | 5.85e-56 | 174 |
| MS.gene93778.t1 | MTR_7g084970 | 49.425 | 174 | 86 | 2 | 1 | 173 | 1 | 173 | 1.92e-55 | 173 |
| MS.gene93778.t1 | MTR_1g060190 | 49.091 | 165 | 82 | 2 | 1 | 163 | 1 | 165 | 9.02e-52 | 164 |
| MS.gene93778.t1 | MTR_7g006630 | 51.829 | 164 | 76 | 3 | 6 | 167 | 1 | 163 | 4.07e-48 | 154 |
| MS.gene93778.t1 | MTR_7g006690 | 50.888 | 169 | 80 | 3 | 1 | 167 | 1 | 168 | 4.20e-48 | 154 |
| MS.gene93778.t1 | MTR_7g085020 | 47.531 | 162 | 83 | 2 | 7 | 167 | 8 | 168 | 1.31e-45 | 148 |
| MS.gene93778.t1 | MTR_7g085040 | 46.012 | 163 | 82 | 4 | 6 | 167 | 6 | 163 | 1.91e-42 | 139 |
| MS.gene93778.t1 | MTR_5g078320 | 82.667 | 75 | 13 | 0 | 99 | 173 | 15 | 89 | 2.23e-39 | 129 |
| MS.gene93778.t1 | MTR_7g052830 | 82.353 | 34 | 6 | 0 | 68 | 101 | 1 | 34 | 5.14e-13 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93778.t1 | AT1G18100 | 76.879 | 173 | 39 | 1 | 2 | 173 | 1 | 173 | 9.15e-100 | 285 |
| MS.gene93778.t1 | AT5G62040 | 49.425 | 174 | 86 | 2 | 2 | 173 | 1 | 174 | 1.51e-57 | 178 |
| MS.gene93778.t1 | AT2G27550 | 50.857 | 175 | 84 | 2 | 1 | 173 | 1 | 175 | 1.50e-55 | 173 |
| MS.gene93778.t1 | AT5G03840 | 45.562 | 169 | 91 | 1 | 6 | 173 | 9 | 177 | 1.86e-53 | 168 |
| MS.gene93778.t1 | AT4G20370 | 51.190 | 168 | 80 | 2 | 1 | 167 | 1 | 167 | 2.40e-53 | 167 |
| MS.gene93778.t1 | AT1G65480 | 50.000 | 162 | 79 | 2 | 7 | 167 | 7 | 167 | 1.79e-52 | 165 |
| MS.gene93778.t1 | AT1G65480 | 50.000 | 162 | 79 | 2 | 7 | 167 | 51 | 211 | 3.13e-52 | 166 |
Find 60 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAGCCTGAGGCTCCTTC+TGG | 0.225327 | 4.1:-633083 | None:intergenic |
| CTCACGCATGTTTGGCTCAC+TGG | 0.230824 | 4.1:-631402 | None:intergenic |
| CAACCATTTGTGACATGTTT+AGG | 0.256839 | 4.1:-631180 | None:intergenic |
| TCCTTATATATACCTCGCTT+TGG | 0.299974 | 4.1:-631613 | None:intergenic |
| GGCTGCCTCGGTTGATCCTT+TGG | 0.316826 | 4.1:+631086 | MS.gene93778:CDS |
| CGCTTTGGGTTTGTTCCTCC+AGG | 0.320975 | 4.1:-631598 | None:intergenic |
| TCACTGGGGCTTGGTGCATC+TGG | 0.323583 | 4.1:-631386 | None:intergenic |
| GGCTGCTCAACCATTCCTAT+TGG | 0.334282 | 4.1:-632976 | None:intergenic |
| TGGATACCAACCGGTGGTTT+TGG | 0.353965 | 4.1:-632919 | None:intergenic |
| AGGATCGTGGTTGACATTCC+TGG | 0.370693 | 4.1:+631580 | MS.gene93778:intron |
| CCTTATATATACCTCGCTTT+GGG | 0.371664 | 4.1:-631612 | None:intergenic |
| CTTAGCCTGAGGCTCCTTCT+GGG | 0.376302 | 4.1:-633082 | None:intergenic |
| AAGGAGATTCTTCCATATAT+AGG | 0.387575 | 4.1:+632895 | MS.gene93778:CDS |
| TCACGCATGTTTGGCTCACT+GGG | 0.389982 | 4.1:-631401 | None:intergenic |
| CCACCCAAGGTCACTCTCAC+TGG | 0.397435 | 4.1:+631231 | MS.gene93778:CDS |
| ATGTTTGGCTCACTGGGGCT+TGG | 0.397820 | 4.1:-631395 | None:intergenic |
| TGTATCAGCTCACGCATGTT+TGG | 0.403877 | 4.1:-631410 | None:intergenic |
| TGGTATCCACCGATACATAT+TGG | 0.404436 | 4.1:+632933 | MS.gene93778:CDS |
| TTTGAGCAGAAGGGACCAAT+AGG | 0.418830 | 4.1:+632961 | MS.gene93778:CDS |
| TTGGTGGTTGGTCGTGTGAT+TGG | 0.419912 | 4.1:+631105 | MS.gene93778:CDS |
| CCAGTGAGAGTGACCTTGGG+TGG | 0.438911 | 4.1:-631231 | None:intergenic |
| GTTGGTATGTCTGTTTACTT+TGG | 0.440691 | 4.1:+631156 | MS.gene93778:CDS |
| GGTCCTAAACATGTCACAAA+TGG | 0.480505 | 4.1:+631177 | MS.gene93778:CDS |
| TCGGTTGATCCTTTGGTGGT+TGG | 0.485892 | 4.1:+631093 | MS.gene93778:CDS |
| ACATGCGTGAGCTGATACAC+TGG | 0.489252 | 4.1:+631414 | MS.gene93778:CDS |
| GACATGTTCATTCCATCTGT+TGG | 0.504699 | 4.1:+631138 | MS.gene93778:CDS |
| GTTTCCAGTGAGAGTGACCT+TGG | 0.510114 | 4.1:-631235 | None:intergenic |
| AGAAGGAGCCTCAGGCTAAG+AGG | 0.523160 | 4.1:+633085 | MS.gene93778:CDS |
| TTAAAGTAGACTGTAGCTAC+AGG | 0.523873 | 4.1:-633057 | None:intergenic |
| TGCCTCGGTTGATCCTTTGG+TGG | 0.525528 | 4.1:+631089 | MS.gene93778:CDS |
| ATGTATCGGTGGATACCAAC+CGG | 0.527511 | 4.1:-632928 | None:intergenic |
| TAACTCCCAGAAGGAGCCTC+AGG | 0.529044 | 4.1:+633077 | MS.gene93778:CDS |
| GGTCACTCTCACTGGAAACA+TGG | 0.545850 | 4.1:+631239 | MS.gene93778:CDS |
| TTTGCAAGTCAATTGAACCT+TGG | 0.546466 | 4.1:+633030 | MS.gene93778:CDS |
| GGTGGGTTGATAGCCATGGA+TGG | 0.548514 | 4.1:-631213 | None:intergenic |
| CAGTGAGAGTGACCTTGGGT+GGG | 0.551987 | 4.1:-631230 | None:intergenic |
| TTTCCAGTGAGAGTGACCTT+GGG | 0.557115 | 4.1:-631234 | None:intergenic |
| CTTGGGTGGGTTGATAGCCA+TGG | 0.562286 | 4.1:-631217 | None:intergenic |
| GGTGATCATGATGGCTGCCT+CGG | 0.563998 | 4.1:+631074 | None:intergenic |
| CAAACAAAACCAATATGTAT+CGG | 0.565284 | 4.1:-632942 | None:intergenic |
| AGTGTTGAAACTGACTCTAC+TGG | 0.584655 | 4.1:-633001 | None:intergenic |
| TAAACAGACATACCAACAGA+TGG | 0.587934 | 4.1:-631150 | None:intergenic |
| ATCACACGACCAACCACCAA+AGG | 0.596985 | 4.1:-631102 | None:intergenic |
| TTGTGACATAAAGCCATCCA+TGG | 0.620992 | 4.1:+631200 | MS.gene93778:CDS |
| ATTGGCTGACCAGAGTGTAG+AGG | 0.622213 | 4.1:-631266 | None:intergenic |
| ACAAAACCAATATGTATCGG+TGG | 0.631832 | 4.1:-632939 | None:intergenic |
| CACGCATGTTTGGCTCACTG+GGG | 0.635008 | 4.1:-631400 | None:intergenic |
| CATGGATAACCTCTACACTC+TGG | 0.637951 | 4.1:+631257 | MS.gene93778:CDS |
| CATGGCTATCAACCCACCCA+AGG | 0.643435 | 4.1:+631218 | MS.gene93778:CDS |
| AGTCTACTTTAACTCCCAGA+AGG | 0.644955 | 4.1:+633068 | MS.gene93778:CDS |
| GCAGAAGGGACCAATAGGAA+TGG | 0.646075 | 4.1:+632966 | MS.gene93778:CDS |
| ATAGGACCAAAACCACCGGT+TGG | 0.655362 | 4.1:+632913 | MS.gene93778:CDS |
| ATATATAGGACCAAAACCAC+CGG | 0.662745 | 4.1:+632909 | MS.gene93778:CDS |
| GTTCAACGCCTCTTAGCCTG+AGG | 0.669979 | 4.1:-633093 | None:intergenic |
| TTGAAACTGACTCTACTGGT+TGG | 0.690180 | 4.1:-632997 | None:intergenic |
| GGAGGAACAAACCCAAAGCG+AGG | 0.693274 | 4.1:+631601 | MS.gene93778:CDS |
| AACCACCAAAGGATCAACCG+AGG | 0.707404 | 4.1:-631091 | None:intergenic |
| ATCGTGGTTGACATTCCTGG+AGG | 0.727325 | 4.1:+631583 | MS.gene93778:CDS |
| TATCGGTGGATACCAACCGG+TGG | 0.737473 | 4.1:-632925 | None:intergenic |
| CTGTAGCTACAGGAAGACCA+AGG | 0.739753 | 4.1:-633047 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCATATCAAAATAAAAAT+AGG | - | chr4.1:631532-631551 | None:intergenic | 10.0% |
| !! | TTCATATCAAAATAAAAATA+GGG | - | chr4.1:631531-631550 | None:intergenic | 10.0% |
| !!! | TGAGTTTATATAATTTTTTT+TGG | + | chr4.1:631740-631759 | MS.gene93778:intron | 10.0% |
| !! | AAATTATAGAGTATGTATAA+AGG | - | chr4.1:632809-632828 | None:intergenic | 15.0% |
| !! | TCAAAAAGAAAAATAATTTG+TGG | - | chr4.1:632103-632122 | None:intergenic | 15.0% |
| !! | TTTACGAAAAAATAAATGTT+TGG | - | chr4.1:632253-632272 | None:intergenic | 15.0% |
| !!! | AACCTTAATTAATTTTTCTT+TGG | + | chr4.1:632862-632881 | MS.gene93778:intron | 15.0% |
| !!! | ATAAGGAAATAATTTTTGAT+CGG | + | chr4.1:631629-631648 | MS.gene93778:intron | 15.0% |
| !!! | CAAATTATTTTTCTTTTTGA+AGG | + | chr4.1:632103-632122 | MS.gene93778:intron | 15.0% |
| !! | ATCAAAATAAAAATAGGGAA+GGG | - | chr4.1:631526-631545 | None:intergenic | 20.0% |
| !! | CACCAAAGAAAAATTAATTA+AGG | - | chr4.1:632867-632886 | None:intergenic | 20.0% |
| !! | TATCAAAATAAAAATAGGGA+AGG | - | chr4.1:631527-631546 | None:intergenic | 20.0% |
| !! | TGCATATAAAATATTGCTAA+AGG | + | chr4.1:632526-632545 | MS.gene93778:intron | 20.0% |
| !!! | ATTATTTTTCTTTTTGAAGG+AGG | + | chr4.1:632106-632125 | MS.gene93778:intron | 20.0% |
| !!! | CAAAAAAGTATGAAGTATTT+GGG | - | chr4.1:632318-632337 | None:intergenic | 20.0% |
| !!! | TCAAAAAAGTATGAAGTATT+TGG | - | chr4.1:632319-632338 | None:intergenic | 20.0% |
| !!! | TTGTGATATTTTTTACAAAG+AGG | - | chr4.1:631927-631946 | None:intergenic | 20.0% |
| !!! | TTGTTTTGTAATTTTTAGCA+AGG | - | chr4.1:632635-632654 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTATATTGAATCC+TGG | + | chr4.1:632012-632031 | MS.gene93778:intron | 20.0% |
| !!! | TTTTCTTCTTATTATGTACA+CGG | + | chr4.1:631669-631688 | MS.gene93778:intron | 20.0% |
| ! | AAAAACTAGTTAACTAGGTA+TGG | - | chr4.1:632200-632219 | None:intergenic | 25.0% |
| ! | CAAACAAAACCAATATGTAT+CGG | - | chr4.1:632945-632964 | None:intergenic | 25.0% |
| ! | TCAAAATAAAAATAGGGAAG+GGG | - | chr4.1:631525-631544 | None:intergenic | 25.0% |
| ! | TCAAAGAGATACATATTGAT+TGG | - | chr4.1:631287-631306 | None:intergenic | 25.0% |
| !! | AACATGCATGAATCTATTTT+CGG | + | chr4.1:631884-631903 | MS.gene93778:intron | 25.0% |
| !!! | ATTGTTCTCTTTAAAACAAG+TGG | - | chr4.1:632484-632503 | None:intergenic | 25.0% |
| !!! | CTTCAAGTTTCCATTTTTTA+AGG | + | chr4.1:631560-631579 | MS.gene93778:intron | 25.0% |
| !!! | GCATTTCTAAAATCAACAAT+CGG | - | chr4.1:631840-631859 | None:intergenic | 25.0% |
| !!! | GTATATGATCAAAGTTTTGA+TGG | + | chr4.1:631323-631342 | MS.gene93778:intron | 25.0% |
| !!! | TGATTTTAGAAATGCTTGTT+TGG | + | chr4.1:631845-631864 | MS.gene93778:intron | 25.0% |
| !!! | TTCATGCATGTTGATTTTTT+TGG | - | chr4.1:631876-631895 | None:intergenic | 25.0% |
| !!! | TTTTTTTGGATGACATACAA+TGG | + | chr4.1:631754-631773 | MS.gene93778:intron | 25.0% |
| AAGGAGATTCTTCCATATAT+AGG | + | chr4.1:632895-632914 | MS.gene93778:CDS | 30.0% | |
| AGTGCAAAAACTAGTTAACT+AGG | - | chr4.1:632205-632224 | None:intergenic | 30.0% | |
| CGTTTGTTTGTGTAAATCAA+CGG | + | chr4.1:632742-632761 | MS.gene93778:intron | 30.0% | |
| ! | GTTGATTTACACAAACAAAC+GGG | - | chr4.1:632743-632762 | None:intergenic | 30.0% |
| !! | AGATACACCAATTTTGAAGA+CGG | + | chr4.1:632361-632380 | MS.gene93778:intron | 30.0% |
| !! | CGTTGATTTACACAAACAAA+CGG | - | chr4.1:632744-632763 | None:intergenic | 30.0% |
| !!! | AGTTAACTAGTTTTTGCACT+CGG | + | chr4.1:632205-632224 | MS.gene93778:intron | 30.0% |
| !!! | TAATTTTTCTTTGGTGTTGC+AGG | + | chr4.1:632871-632890 | MS.gene93778:intron | 30.0% |
| !!! | TTTCCATTTTTTAAGGATCG+TGG | + | chr4.1:631567-631586 | MS.gene93778:intron | 30.0% |
| ACAAAACCAATATGTATCGG+TGG | - | chr4.1:632942-632961 | None:intergenic | 35.0% | |
| ACGGGCATGATTTATGTTAA+AGG | - | chr4.1:632725-632744 | None:intergenic | 35.0% | |
| ATATATAGGACCAAAACCAC+CGG | + | chr4.1:632909-632928 | MS.gene93778:CDS | 35.0% | |
| CAACCACGATCCTTAAAAAA+TGG | - | chr4.1:631573-631592 | None:intergenic | 35.0% | |
| CAACCATTTGTGACATGTTT+AGG | - | chr4.1:631183-631202 | None:intergenic | 35.0% | |
| CCTTATATATACCTCGCTTT+GGG | - | chr4.1:631615-631634 | None:intergenic | 35.0% | |
| GTTGGTATGTCTGTTTACTT+TGG | + | chr4.1:631156-631175 | MS.gene93778:CDS | 35.0% | |
| TAAAATCAACAATCGGCAAG+TGG | - | chr4.1:631833-631852 | None:intergenic | 35.0% | |
| TAAACAGACATACCAACAGA+TGG | - | chr4.1:631153-631172 | None:intergenic | 35.0% | |
| TCACTTATCAAGATGTTGCA+TGG | + | chr4.1:631716-631735 | MS.gene93778:intron | 35.0% | |
| TCCTTATATATACCTCGCTT+TGG | - | chr4.1:631616-631635 | None:intergenic | 35.0% | |
| TTAAAGTAGACTGTAGCTAC+AGG | - | chr4.1:633060-633079 | None:intergenic | 35.0% | |
| TTTGCAAGTCAATTGAACCT+TGG | + | chr4.1:633030-633049 | MS.gene93778:CDS | 35.0% | |
| !! | GATACACCAATTTTGAAGAC+GGG | + | chr4.1:632362-632381 | MS.gene93778:intron | 35.0% |
| !!! | ATTGGTTTTGTTTGAGCAGA+AGG | + | chr4.1:632951-632970 | MS.gene93778:CDS | 35.0% |
| !!! | TTGGTTTTGTTTGAGCAGAA+GGG | + | chr4.1:632952-632971 | MS.gene93778:CDS | 35.0% |
| AAGACACCCGTCTTCAAAAT+TGG | - | chr4.1:632371-632390 | None:intergenic | 40.0% | |
| AGTCTACTTTAACTCCCAGA+AGG | + | chr4.1:633068-633087 | MS.gene93778:CDS | 40.0% | |
| AGTGTGAGAAGCTCATTTGT+TGG | - | chr4.1:631993-632012 | None:intergenic | 40.0% | |
| CCCAAAGCGAGGTATATATA+AGG | + | chr4.1:631612-631631 | MS.gene93778:intron | 40.0% | |
| GACATGTTCATTCCATCTGT+TGG | + | chr4.1:631138-631157 | MS.gene93778:CDS | 40.0% | |
| GGTCCTAAACATGTCACAAA+TGG | + | chr4.1:631177-631196 | MS.gene93778:CDS | 40.0% | |
| TGGAAGACAACATTGAATCC+AGG | - | chr4.1:632033-632052 | None:intergenic | 40.0% | |
| TGGTATCCACCGATACATAT+TGG | + | chr4.1:632933-632952 | MS.gene93778:CDS | 40.0% | |
| TTGTGACATAAAGCCATCCA+TGG | + | chr4.1:631200-631219 | MS.gene93778:CDS | 40.0% | |
| ! | AGTGTTGAAACTGACTCTAC+TGG | - | chr4.1:633004-633023 | None:intergenic | 40.0% |
| ! | CATTTGTTGGATTGAAGCAG+TGG | - | chr4.1:631980-631999 | None:intergenic | 40.0% |
| ! | TTGAAACTGACTCTACTGGT+TGG | - | chr4.1:633000-633019 | None:intergenic | 40.0% |
| !! | TTTCTTTGGTGTTGCAGGAA+AGG | + | chr4.1:632876-632895 | MS.gene93778:intron | 40.0% |
| !!! | GGTGGTTTTGGTCCTATATA+TGG | - | chr4.1:632910-632929 | None:intergenic | 40.0% |
| ACGTTTCCTGTGTGACACAT+TGG | - | chr4.1:632460-632479 | None:intergenic | 45.0% | |
| AGATCATCACACGTAGCATG+TGG | + | chr4.1:632397-632416 | MS.gene93778:intron | 45.0% | |
| CATGGATAACCTCTACACTC+TGG | + | chr4.1:631257-631276 | MS.gene93778:CDS | 45.0% | |
| TCATGACCAATGTGTCACAC+AGG | + | chr4.1:632451-632470 | MS.gene93778:intron | 45.0% | |
| TGCTACGTGTGATGATCTCA+AGG | - | chr4.1:632395-632414 | None:intergenic | 45.0% | |
| TGGATTGAAGCAGTGGAACA+AGG | - | chr4.1:631973-631992 | None:intergenic | 45.0% | |
| TGTATCAGCTCACGCATGTT+TGG | - | chr4.1:631413-631432 | None:intergenic | 45.0% | |
| TTTCCAGTGAGAGTGACCTT+GGG | - | chr4.1:631237-631256 | None:intergenic | 45.0% | |
| TTTGAGCAGAAGGGACCAAT+AGG | + | chr4.1:632961-632980 | MS.gene93778:CDS | 45.0% | |
| ! | ATGTATCGGTGGATACCAAC+CGG | - | chr4.1:632931-632950 | None:intergenic | 45.0% |
| ! | TGGCTTGCATGTCACAAAAG+TGG | + | chr4.1:632417-632436 | MS.gene93778:intron | 45.0% |
| AACCACCAAAGGATCAACCG+AGG | - | chr4.1:631094-631113 | None:intergenic | 50.0% | |
| ACATGCGTGAGCTGATACAC+TGG | + | chr4.1:631414-631433 | MS.gene93778:CDS | 50.0% | |
| AGGATCGTGGTTGACATTCC+TGG | + | chr4.1:631580-631599 | MS.gene93778:intron | 50.0% | |
| ATAGGACCAAAACCACCGGT+TGG | + | chr4.1:632913-632932 | MS.gene93778:CDS | 50.0% | |
| ATCACACGACCAACCACCAA+AGG | - | chr4.1:631105-631124 | None:intergenic | 50.0% | |
| ATCGTGGTTGACATTCCTGG+AGG | + | chr4.1:631583-631602 | MS.gene93778:CDS | 50.0% | |
| ATTGGCTGACCAGAGTGTAG+AGG | - | chr4.1:631269-631288 | None:intergenic | 50.0% | |
| CTGTAGCTACAGGAAGACCA+AGG | - | chr4.1:633050-633069 | None:intergenic | 50.0% | |
| GAAGCACGCACGAATAGACA+TGG | - | chr4.1:632769-632788 | None:intergenic | 50.0% | |
| GCAGAAGGGACCAATAGGAA+TGG | + | chr4.1:632966-632985 | MS.gene93778:CDS | 50.0% | |
| GGCTGCTCAACCATTCCTAT+TGG | - | chr4.1:632979-632998 | None:intergenic | 50.0% | |
| GGTCACTCTCACTGGAAACA+TGG | + | chr4.1:631239-631258 | MS.gene93778:CDS | 50.0% | |
| GTTTCCAGTGAGAGTGACCT+TGG | - | chr4.1:631238-631257 | None:intergenic | 50.0% | |
| ! | TCACGCATGTTTGGCTCACT+GGG | - | chr4.1:631404-631423 | None:intergenic | 50.0% |
| ! | TCGGTTGATCCTTTGGTGGT+TGG | + | chr4.1:631093-631112 | MS.gene93778:CDS | 50.0% |
| ! | TGGATACCAACCGGTGGTTT+TGG | - | chr4.1:632922-632941 | None:intergenic | 50.0% |
| ! | TTGGTGGTTGGTCGTGTGAT+TGG | + | chr4.1:631105-631124 | MS.gene93778:CDS | 50.0% |
| AGAAGGAGCCTCAGGCTAAG+AGG | + | chr4.1:633085-633104 | MS.gene93778:CDS | 55.0% | |
| CAGTGAGAGTGACCTTGGGT+GGG | - | chr4.1:631233-631252 | None:intergenic | 55.0% | |
| CATGCAGCACAGGTGGAAGA+TGG | - | chr4.1:632053-632072 | None:intergenic | 55.0% | |
| CATGGCTATCAACCCACCCA+AGG | + | chr4.1:631218-631237 | MS.gene93778:CDS | 55.0% | |
| CTTAGCCTGAGGCTCCTTCT+GGG | - | chr4.1:633085-633104 | None:intergenic | 55.0% | |
| GGAGGAACAAACCCAAAGCG+AGG | + | chr4.1:631601-631620 | MS.gene93778:CDS | 55.0% | |
| TAACTCCCAGAAGGAGCCTC+AGG | + | chr4.1:633077-633096 | MS.gene93778:CDS | 55.0% | |
| TATCGGTGGATACCAACCGG+TGG | - | chr4.1:632928-632947 | None:intergenic | 55.0% | |
| TCTTAGCCTGAGGCTCCTTC+TGG | - | chr4.1:633086-633105 | None:intergenic | 55.0% | |
| TCTTCCACCTGTGCTGCATG+TGG | + | chr4.1:632053-632072 | MS.gene93778:intron | 55.0% | |
| TGCCTCGGTTGATCCTTTGG+TGG | + | chr4.1:631089-631108 | MS.gene93778:CDS | 55.0% | |
| ! | ATGTTTGGCTCACTGGGGCT+TGG | - | chr4.1:631398-631417 | None:intergenic | 55.0% |
| ! | CACGCATGTTTGGCTCACTG+GGG | - | chr4.1:631403-631422 | None:intergenic | 55.0% |
| ! | CGCTTTGGGTTTGTTCCTCC+AGG | - | chr4.1:631601-631620 | None:intergenic | 55.0% |
| ! | CTCACGCATGTTTGGCTCAC+TGG | - | chr4.1:631405-631424 | None:intergenic | 55.0% |
| !! | CTTGGGTGGGTTGATAGCCA+TGG | - | chr4.1:631220-631239 | None:intergenic | 55.0% |
| !! | GGTGGGTTGATAGCCATGGA+TGG | - | chr4.1:631216-631235 | None:intergenic | 55.0% |
| ATAGCCGCCACATGCAGCAC+AGG | - | chr4.1:632063-632082 | None:intergenic | 60.0% | |
| CCACCCAAGGTCACTCTCAC+TGG | + | chr4.1:631231-631250 | MS.gene93778:CDS | 60.0% | |
| CCAGTGAGAGTGACCTTGGG+TGG | - | chr4.1:631234-631253 | None:intergenic | 60.0% | |
| GGCTGCCTCGGTTGATCCTT+TGG | + | chr4.1:631086-631105 | MS.gene93778:CDS | 60.0% | |
| TCCACCTGTGCTGCATGTGG+CGG | + | chr4.1:632056-632075 | MS.gene93778:intron | 60.0% | |
| !! | TCACTGGGGCTTGGTGCATC+TGG | - | chr4.1:631389-631408 | None:intergenic | 60.0% |
| GCCGCCACATGCAGCACAGG+TGG | - | chr4.1:632060-632079 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 631081 | 633113 | 631081 | ID=MS.gene93778 |
| chr4.1 | mRNA | 631081 | 633113 | 631081 | ID=MS.gene93778.t1;Parent=MS.gene93778 |
| chr4.1 | exon | 631081 | 631278 | 631081 | ID=MS.gene93778.t1.exon1;Parent=MS.gene93778.t1 |
| chr4.1 | CDS | 631081 | 631278 | 631081 | ID=cds.MS.gene93778.t1;Parent=MS.gene93778.t1 |
| chr4.1 | exon | 631374 | 631435 | 631374 | ID=MS.gene93778.t1.exon2;Parent=MS.gene93778.t1 |
| chr4.1 | CDS | 631374 | 631435 | 631374 | ID=cds.MS.gene93778.t1;Parent=MS.gene93778.t1 |
| chr4.1 | exon | 631582 | 631622 | 631582 | ID=MS.gene93778.t1.exon3;Parent=MS.gene93778.t1 |
| chr4.1 | CDS | 631582 | 631622 | 631582 | ID=cds.MS.gene93778.t1;Parent=MS.gene93778.t1 |
| chr4.1 | exon | 632893 | 633113 | 632893 | ID=MS.gene93778.t1.exon4;Parent=MS.gene93778.t1 |
| chr4.1 | CDS | 632893 | 633113 | 632893 | ID=cds.MS.gene93778.t1;Parent=MS.gene93778.t1 |
| Gene Sequence |
| Protein sequence |
