Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94268.t1 | XP_003623196.1 | 94.2 | 224 | 13 | 0 | 1 | 224 | 1 | 224 | 9.70E-117 | 429.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94268.t1 | P32110 | 71.1 | 225 | 64 | 1 | 1 | 224 | 1 | 225 | 4.7e-88 | 325.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94268.t1 | G7L6H0 | 94.2 | 224 | 13 | 0 | 1 | 224 | 1 | 224 | 7.0e-117 | 429.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053094 | MS.gene94268 | 0.805594 | 1.24E-49 | -1.69E-46 |
| MS.gene053963 | MS.gene94268 | 0.809606 | 1.74E-50 | -1.69E-46 |
| MS.gene054892 | MS.gene94268 | 0.815386 | 9.49E-52 | -1.69E-46 |
| MS.gene054893 | MS.gene94268 | 0.814824 | 1.27E-51 | -1.69E-46 |
| MS.gene055147 | MS.gene94268 | 0.948652 | 6.17E-107 | -1.69E-46 |
| MS.gene055148 | MS.gene94268 | 0.96412 | 6.28E-123 | -1.69E-46 |
| MS.gene055149 | MS.gene94268 | 0.873686 | 1.21E-67 | -1.69E-46 |
| MS.gene055150 | MS.gene94268 | 0.80911 | 2.22E-50 | -1.69E-46 |
| MS.gene05808 | MS.gene94268 | 0.813902 | 2.02E-51 | -1.69E-46 |
| MS.gene058592 | MS.gene94268 | 0.80741 | 5.12E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94268.t1 | MTR_7g065600 | 94.196 | 224 | 13 | 0 | 1 | 224 | 1 | 224 | 9.65e-159 | 438 |
| MS.gene94268.t1 | MTR_7g065590 | 79.464 | 224 | 46 | 0 | 1 | 224 | 1 | 224 | 8.22e-135 | 378 |
| MS.gene94268.t1 | MTR_7g065290 | 77.679 | 224 | 50 | 0 | 1 | 224 | 1 | 224 | 9.68e-132 | 370 |
| MS.gene94268.t1 | MTR_7g065265 | 74.107 | 224 | 58 | 0 | 1 | 224 | 1 | 224 | 5.15e-125 | 353 |
| MS.gene94268.t1 | MTR_7g065230 | 75.893 | 224 | 49 | 1 | 1 | 224 | 1 | 219 | 3.39e-124 | 350 |
| MS.gene94268.t1 | MTR_7g065270 | 72.768 | 224 | 61 | 0 | 1 | 224 | 1 | 224 | 1.17e-122 | 347 |
| MS.gene94268.t1 | MTR_7g065260 | 75.556 | 225 | 54 | 1 | 1 | 224 | 8 | 232 | 5.81e-115 | 328 |
| MS.gene94268.t1 | MTR_7g065720 | 68.889 | 225 | 69 | 1 | 1 | 224 | 1 | 225 | 2.04e-114 | 326 |
| MS.gene94268.t1 | MTR_7g065660 | 67.713 | 223 | 72 | 0 | 1 | 223 | 1 | 223 | 2.99e-113 | 323 |
| MS.gene94268.t1 | MTR_7g065740 | 62.946 | 224 | 82 | 1 | 1 | 223 | 1 | 224 | 4.27e-107 | 308 |
| MS.gene94268.t1 | MTR_7g065630 | 66.368 | 223 | 71 | 1 | 1 | 223 | 19 | 237 | 1.45e-106 | 307 |
| MS.gene94268.t1 | MTR_7g065750 | 63.393 | 224 | 81 | 1 | 1 | 223 | 1 | 224 | 1.38e-103 | 299 |
| MS.gene94268.t1 | MTR_4g019790 | 60.987 | 223 | 87 | 0 | 1 | 223 | 1 | 223 | 5.06e-103 | 297 |
| MS.gene94268.t1 | MTR_7g065640 | 61.883 | 223 | 67 | 1 | 1 | 223 | 1 | 205 | 2.60e-99 | 287 |
| MS.gene94268.t1 | MTR_7g065710 | 64.251 | 207 | 70 | 1 | 8 | 214 | 5 | 207 | 2.05e-95 | 278 |
| MS.gene94268.t1 | MTR_4g019780 | 61.682 | 214 | 80 | 2 | 3 | 215 | 4 | 216 | 2.04e-93 | 273 |
| MS.gene94268.t1 | MTR_7g065680 | 65.315 | 222 | 73 | 1 | 1 | 222 | 1 | 218 | 2.17e-92 | 270 |
| MS.gene94268.t1 | MTR_7g065700 | 63.551 | 214 | 74 | 1 | 1 | 214 | 1 | 210 | 3.16e-87 | 257 |
| MS.gene94268.t1 | MTR_1g090150 | 45.249 | 221 | 116 | 2 | 5 | 222 | 1 | 219 | 1.08e-65 | 202 |
| MS.gene94268.t1 | MTR_6g080440 | 47.826 | 207 | 106 | 2 | 8 | 213 | 4 | 209 | 5.43e-64 | 198 |
| MS.gene94268.t1 | MTR_8g087425 | 46.789 | 218 | 114 | 2 | 4 | 220 | 2 | 218 | 1.44e-63 | 197 |
| MS.gene94268.t1 | MTR_3g099757 | 49.091 | 220 | 110 | 2 | 5 | 223 | 3 | 221 | 5.76e-63 | 196 |
| MS.gene94268.t1 | MTR_8g087410 | 45.161 | 217 | 116 | 3 | 1 | 216 | 1 | 215 | 1.47e-58 | 184 |
| MS.gene94268.t1 | MTR_1g115195 | 45.070 | 213 | 114 | 2 | 7 | 216 | 3 | 215 | 4.02e-58 | 183 |
| MS.gene94268.t1 | MTR_5g040430 | 41.441 | 222 | 122 | 3 | 1 | 215 | 1 | 221 | 4.08e-57 | 181 |
| MS.gene94268.t1 | MTR_1g090070 | 42.793 | 222 | 118 | 4 | 8 | 223 | 10 | 228 | 8.64e-56 | 177 |
| MS.gene94268.t1 | MTR_1g090100 | 43.182 | 220 | 119 | 4 | 8 | 223 | 3 | 220 | 2.58e-54 | 173 |
| MS.gene94268.t1 | MTR_5g037380 | 43.182 | 220 | 115 | 3 | 1 | 212 | 1 | 218 | 3.99e-54 | 173 |
| MS.gene94268.t1 | MTR_1g090060 | 42.081 | 221 | 122 | 4 | 8 | 224 | 4 | 222 | 2.47e-53 | 171 |
| MS.gene94268.t1 | MTR_4g059730 | 39.906 | 213 | 124 | 2 | 6 | 215 | 3 | 214 | 3.14e-51 | 166 |
| MS.gene94268.t1 | MTR_8g061950 | 42.466 | 219 | 118 | 3 | 5 | 215 | 3 | 221 | 1.14e-50 | 164 |
| MS.gene94268.t1 | MTR_1g090090 | 41.627 | 209 | 116 | 4 | 8 | 212 | 4 | 210 | 6.05e-50 | 162 |
| MS.gene94268.t1 | MTR_2g070200 | 40.196 | 204 | 118 | 3 | 6 | 207 | 3 | 204 | 5.27e-44 | 147 |
| MS.gene94268.t1 | MTR_2g070150 | 38.235 | 204 | 121 | 4 | 6 | 207 | 3 | 203 | 1.32e-42 | 143 |
| MS.gene94268.t1 | MTR_3g467420 | 42.000 | 200 | 111 | 4 | 7 | 204 | 9 | 205 | 1.49e-42 | 143 |
| MS.gene94268.t1 | MTR_2g070130 | 38.235 | 204 | 121 | 4 | 6 | 207 | 3 | 203 | 3.34e-41 | 140 |
| MS.gene94268.t1 | MTR_2g070180 | 37.745 | 204 | 122 | 4 | 6 | 207 | 3 | 203 | 4.76e-41 | 139 |
| MS.gene94268.t1 | MTR_4g124130 | 43.229 | 192 | 99 | 6 | 5 | 191 | 2 | 188 | 4.05e-40 | 137 |
| MS.gene94268.t1 | MTR_2g070140 | 37.436 | 195 | 117 | 4 | 21 | 213 | 2 | 193 | 5.38e-40 | 136 |
| MS.gene94268.t1 | MTR_3g467430 | 39.901 | 203 | 117 | 4 | 4 | 204 | 6 | 205 | 6.17e-39 | 134 |
| MS.gene94268.t1 | MTR_8g056940 | 41.270 | 189 | 106 | 4 | 6 | 192 | 3 | 188 | 1.98e-38 | 133 |
| MS.gene94268.t1 | MTR_5g076900 | 38.164 | 207 | 123 | 4 | 3 | 207 | 2 | 205 | 7.13e-38 | 131 |
| MS.gene94268.t1 | MTR_2g070210 | 37.264 | 212 | 126 | 5 | 6 | 213 | 3 | 211 | 9.74e-38 | 131 |
| MS.gene94268.t1 | MTR_2g070120 | 37.864 | 206 | 123 | 4 | 6 | 209 | 3 | 205 | 1.33e-37 | 130 |
| MS.gene94268.t1 | MTR_2g070070 | 38.693 | 199 | 117 | 4 | 8 | 204 | 5 | 200 | 3.64e-36 | 127 |
| MS.gene94268.t1 | MTR_2g070060 | 36.634 | 202 | 123 | 4 | 8 | 207 | 5 | 203 | 1.71e-35 | 125 |
| MS.gene94268.t1 | MTR_2g070110 | 36.715 | 207 | 125 | 4 | 8 | 212 | 5 | 207 | 1.07e-30 | 113 |
| MS.gene94268.t1 | MTR_0186s0030 | 45.385 | 130 | 69 | 2 | 16 | 144 | 13 | 141 | 1.87e-30 | 110 |
| MS.gene94268.t1 | MTR_2g072120 | 44.615 | 65 | 35 | 1 | 51 | 114 | 2 | 66 | 3.64e-15 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94268.t1 | AT3G09270 | 50.893 | 224 | 106 | 4 | 3 | 223 | 2 | 224 | 1.49e-76 | 230 |
| MS.gene94268.t1 | AT2G29420 | 48.402 | 219 | 111 | 2 | 3 | 220 | 5 | 222 | 1.28e-72 | 220 |
| MS.gene94268.t1 | AT2G29490 | 47.847 | 209 | 106 | 3 | 1 | 207 | 1 | 208 | 1.45e-60 | 189 |
| MS.gene94268.t1 | AT2G29450 | 43.498 | 223 | 124 | 2 | 3 | 223 | 2 | 224 | 3.92e-57 | 181 |
| MS.gene94268.t1 | AT2G29460 | 43.694 | 222 | 122 | 3 | 1 | 220 | 1 | 221 | 7.45e-56 | 177 |
| MS.gene94268.t1 | AT2G29480 | 44.498 | 209 | 113 | 3 | 1 | 207 | 1 | 208 | 9.85e-55 | 175 |
| MS.gene94268.t1 | AT2G29440 | 41.778 | 225 | 127 | 4 | 1 | 223 | 1 | 223 | 4.01e-53 | 171 |
| MS.gene94268.t1 | AT1G10370 | 44.550 | 211 | 108 | 3 | 1 | 204 | 1 | 209 | 5.79e-53 | 170 |
| MS.gene94268.t1 | AT2G29470 | 43.810 | 210 | 114 | 4 | 1 | 207 | 1 | 209 | 9.59e-53 | 169 |
| MS.gene94268.t1 | AT1G69930 | 38.839 | 224 | 131 | 2 | 2 | 219 | 7 | 230 | 9.92e-52 | 167 |
| MS.gene94268.t1 | AT1G10360 | 41.262 | 206 | 114 | 2 | 6 | 204 | 4 | 209 | 4.31e-50 | 163 |
| MS.gene94268.t1 | AT1G27130 | 40.265 | 226 | 124 | 5 | 1 | 217 | 1 | 224 | 5.61e-49 | 160 |
| MS.gene94268.t1 | AT1G59700 | 44.037 | 218 | 114 | 3 | 5 | 214 | 4 | 221 | 6.57e-49 | 160 |
| MS.gene94268.t1 | AT1G59670 | 43.269 | 208 | 110 | 3 | 5 | 204 | 4 | 211 | 2.01e-48 | 159 |
| MS.gene94268.t1 | AT5G62480 | 39.819 | 221 | 122 | 4 | 5 | 215 | 6 | 225 | 5.94e-46 | 153 |
| MS.gene94268.t1 | AT1G27140 | 38.767 | 227 | 129 | 4 | 1 | 218 | 1 | 226 | 1.93e-44 | 149 |
| MS.gene94268.t1 | AT1G78320 | 40.865 | 208 | 118 | 4 | 5 | 210 | 2 | 206 | 2.52e-44 | 148 |
| MS.gene94268.t1 | AT1G17170 | 40.826 | 218 | 121 | 5 | 6 | 220 | 3 | 215 | 3.44e-44 | 147 |
| MS.gene94268.t1 | AT1G78380 | 41.063 | 207 | 117 | 4 | 8 | 212 | 5 | 208 | 1.69e-43 | 145 |
| MS.gene94268.t1 | AT1G78370 | 40.488 | 205 | 117 | 4 | 10 | 212 | 7 | 208 | 2.19e-43 | 145 |
| MS.gene94268.t1 | AT1G78340 | 41.148 | 209 | 118 | 4 | 6 | 212 | 3 | 208 | 1.34e-42 | 143 |
| MS.gene94268.t1 | AT1G69920 | 36.564 | 227 | 134 | 4 | 1 | 217 | 26 | 252 | 1.21e-41 | 142 |
| MS.gene94268.t1 | AT1G74590 | 33.921 | 227 | 143 | 3 | 1 | 221 | 1 | 226 | 1.36e-41 | 141 |
| MS.gene94268.t1 | AT1G53680 | 39.048 | 210 | 123 | 4 | 1 | 207 | 1 | 208 | 2.53e-41 | 140 |
| MS.gene94268.t1 | AT1G17180 | 37.799 | 209 | 125 | 4 | 6 | 212 | 3 | 208 | 1.28e-39 | 136 |
| MS.gene94268.t1 | AT1G78360 | 39.904 | 208 | 119 | 5 | 8 | 212 | 5 | 209 | 7.12e-39 | 134 |
| MS.gene94268.t1 | AT1G17190 | 38.318 | 214 | 125 | 5 | 1 | 212 | 1 | 209 | 7.19e-38 | 131 |
| MS.gene94268.t1 | AT3G43800 | 35.749 | 207 | 124 | 6 | 4 | 204 | 2 | 205 | 9.85e-36 | 126 |
| MS.gene94268.t1 | AT5G62480 | 31.818 | 220 | 115 | 4 | 5 | 215 | 6 | 199 | 4.09e-28 | 106 |
| MS.gene94268.t1 | AT5G62480 | 31.818 | 220 | 114 | 4 | 5 | 215 | 6 | 198 | 6.94e-28 | 105 |
| MS.gene94268.t1 | AT1G78320 | 33.816 | 207 | 107 | 4 | 5 | 210 | 2 | 179 | 1.20e-27 | 104 |
| MS.gene94268.t1 | AT2G02380 | 28.837 | 215 | 134 | 6 | 5 | 207 | 9 | 216 | 5.54e-17 | 77.0 |
| MS.gene94268.t1 | AT2G02390 | 29.358 | 218 | 133 | 7 | 3 | 207 | 4 | 213 | 1.15e-16 | 76.3 |
| MS.gene94268.t1 | AT2G02390 | 28.444 | 225 | 133 | 8 | 3 | 207 | 4 | 220 | 2.87e-14 | 69.7 |
| MS.gene94268.t1 | AT2G02390 | 40.206 | 97 | 54 | 2 | 3 | 96 | 4 | 99 | 7.93e-14 | 67.8 |
Find 44 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAGCCTTGGCTCGTTTC+TGG | 0.120947 | 7.3:+40540888 | MS.gene94268:CDS |
| GAGCTTAAGGATAATTTCTT+TGG | 0.282538 | 7.3:+40541933 | MS.gene94268:CDS |
| ACAGGAACTTTCTTATAAAC+AGG | 0.283283 | 7.3:-40540764 | None:intergenic |
| TAAGGATCAGAAGGCAATAT+TGG | 0.299422 | 7.3:-40540863 | None:intergenic |
| GCCTCCTAGAGAAGGACTTT+TGG | 0.337294 | 7.3:+40542121 | MS.gene94268:CDS |
| AATTCTTGAGAATGAGCTTA+AGG | 0.354197 | 7.3:+40541920 | MS.gene94268:CDS |
| TTCTTTGGTGGAGAGGAGAT+TGG | 0.368042 | 7.3:+40541948 | MS.gene94268:CDS |
| GGCAATTTATCCTTAACAAC+TGG | 0.375316 | 7.3:-40542101 | None:intergenic |
| TTGACTCCATTTGTAAAGCT+TGG | 0.384299 | 7.3:-40542063 | None:intergenic |
| CACCAACCATCCAGTTGTTA+AGG | 0.388600 | 7.3:+40542091 | MS.gene94268:CDS |
| CGCTAAGATGGCATCAAATC+AGG | 0.389304 | 7.3:+40540604 | None:intergenic |
| TGACTCCATTTGTAAAGCTT+GGG | 0.390868 | 7.3:-40542062 | None:intergenic |
| TTTGTTGCTTCTTGTACAAT+GGG | 0.408906 | 7.3:-40542011 | None:intergenic |
| GTTTGTTGCTTCTTGTACAA+TGG | 0.430175 | 7.3:-40542012 | None:intergenic |
| ATCACAAGGGATTCTGATAT+AGG | 0.433145 | 7.3:-40540806 | None:intergenic |
| GACCAAGTTCATAGATGATA+AGG | 0.434027 | 7.3:+40540910 | MS.gene94268:CDS |
| CTTAAGGATAATTTCTTTGG+TGG | 0.454634 | 7.3:+40541936 | MS.gene94268:CDS |
| GGAGATTGCTCTAACATTGA+AGG | 0.460355 | 7.3:+40540676 | MS.gene94268:CDS |
| AATTTCCCAAGCTTTACAAA+TGG | 0.474830 | 7.3:+40542057 | MS.gene94268:CDS |
| TACCTTATCATCTATGAACT+TGG | 0.479710 | 7.3:-40540912 | None:intergenic |
| ATCCTTAACAACTGGATGGT+TGG | 0.488666 | 7.3:-40542093 | None:intergenic |
| ATCTCCACCCTACTCACAAA+TGG | 0.497901 | 7.3:-40540659 | None:intergenic |
| CAATATCAGTTAGAAAAGGC+AGG | 0.504225 | 7.3:+40540710 | MS.gene94268:CDS |
| TTATCATTATGAACTAATAC+AGG | 0.517988 | 7.3:-40540782 | None:intergenic |
| GGCAAGTCCATTTGTGAGTA+GGG | 0.523330 | 7.3:+40540652 | MS.gene94268:CDS |
| GGATAATTTCTTTGGTGGAG+AGG | 0.526031 | 7.3:+40541941 | MS.gene94268:CDS |
| ATACCAATATCAGTTAGAAA+AGG | 0.539142 | 7.3:+40540706 | MS.gene94268:CDS |
| GATAAATTGCCTCCTAGAGA+AGG | 0.547220 | 7.3:+40542113 | MS.gene94268:CDS |
| TGATCCTTACAAAAGAGCCT+TGG | 0.548089 | 7.3:+40540877 | MS.gene94268:CDS |
| TTGAGTATGTCGATGAGACC+TGG | 0.549849 | 7.3:+40540831 | MS.gene94268:CDS |
| TAAGCCAAAAGTCCTTCTCT+AGG | 0.550201 | 7.3:-40542125 | None:intergenic |
| AGAACGTGAGAAAGCTATTG+AGG | 0.557970 | 7.3:+40541878 | MS.gene94268:CDS |
| ATTTATCCTTAACAACTGGA+TGG | 0.561475 | 7.3:-40542097 | None:intergenic |
| CAGGAACTTTCTTATAAACA+GGG | 0.564477 | 7.3:-40540763 | None:intergenic |
| AATATCAGTTAGAAAAGGCA+GGG | 0.582241 | 7.3:+40540711 | MS.gene94268:CDS |
| GAGATTGCTCTAACATTGAA+GGG | 0.597295 | 7.3:+40540677 | MS.gene94268:CDS |
| CGACATACTCAAGAATCACA+AGG | 0.607291 | 7.3:-40540820 | None:intergenic |
| TGGCAAGTCCATTTGTGAGT+AGG | 0.615908 | 7.3:+40540651 | MS.gene94268:CDS |
| GCCAAAAGTCCTTCTCTAGG+AGG | 0.619286 | 7.3:-40542122 | None:intergenic |
| ACCAGTGTTTAAGTGCTGCA+CGG | 0.628510 | 7.3:+40541829 | MS.gene94268:intron |
| CTTGGTCCAGAAACGAGCCA+AGG | 0.682377 | 7.3:-40540894 | None:intergenic |
| TTGTTGCTTCTTGTACAATG+GGG | 0.684989 | 7.3:-40542010 | None:intergenic |
| AAGTCCATTTGTGAGTAGGG+TGG | 0.696953 | 7.3:+40540655 | MS.gene94268:CDS |
| GACATACTCAAGAATCACAA+GGG | 0.702786 | 7.3:-40540819 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTTTTCATTTTAAAATTA+CGG | + | chr7.3:40541338-40541357 | MS.gene94268:intron | 10.0% |
| !! | AATAAATATGATATTTGAAG+CGG | - | chr7.3:40541565-40541584 | None:intergenic | 15.0% |
| !! | AATATTTAAGAAGAATAATC+TGG | + | chr7.3:40541695-40541714 | MS.gene94268:intron | 15.0% |
| !! | TTATCATTATGAACTAATAC+AGG | - | chr7.3:40540785-40540804 | None:intergenic | 20.0% |
| !!! | ACACTGGTTTTAAAAAATTA+AGG | - | chr7.3:40541817-40541836 | None:intergenic | 20.0% |
| !!! | ACTTTTAAAGTGTATAAATG+GGG | + | chr7.3:40541012-40541031 | MS.gene94268:intron | 20.0% |
| !!! | CACTTTTAAAGTGTATAAAT+GGG | + | chr7.3:40541011-40541030 | MS.gene94268:intron | 20.0% |
| !!! | TCACTTTTAAAGTGTATAAA+TGG | + | chr7.3:40541010-40541029 | MS.gene94268:intron | 20.0% |
| ! | AGAGAAAAACATAATACATG+TGG | + | chr7.3:40541225-40541244 | MS.gene94268:intron | 25.0% |
| ! | ATACCAATATCAGTTAGAAA+AGG | + | chr7.3:40540706-40540725 | MS.gene94268:CDS | 25.0% |
| ! | ATGACTATTATATATGCATG+TGG | + | chr7.3:40541603-40541622 | MS.gene94268:intron | 25.0% |
| ! | TAAAATATTTCACAAGCATG+TGG | + | chr7.3:40541145-40541164 | MS.gene94268:intron | 25.0% |
| ! | TTATTCAACAAAACGAGTAA+CGG | + | chr7.3:40541580-40541599 | MS.gene94268:intron | 25.0% |
| !! | GTATTATGTTTTTCTCTATG+CGG | - | chr7.3:40541222-40541241 | None:intergenic | 25.0% |
| !! | TGAAATATAATGACTTGTGA+CGG | - | chr7.3:40541652-40541671 | None:intergenic | 25.0% |
| !!! | AGGGTTTACTTTTCTTATTA+CGG | - | chr7.3:40541467-40541486 | None:intergenic | 25.0% |
| AAATACCACAAACTTCACTA+AGG | + | chr7.3:40541270-40541289 | MS.gene94268:intron | 30.0% | |
| AATACCACAAACTTCACTAA+GGG | + | chr7.3:40541271-40541290 | MS.gene94268:intron | 30.0% | |
| AATATCAGTTAGAAAAGGCA+GGG | + | chr7.3:40540711-40540730 | MS.gene94268:CDS | 30.0% | |
| AATTCTTGAGAATGAGCTTA+AGG | + | chr7.3:40541920-40541939 | MS.gene94268:CDS | 30.0% | |
| AATTTCCCAAGCTTTACAAA+TGG | + | chr7.3:40542057-40542076 | MS.gene94268:CDS | 30.0% | |
| ACAGGAACTTTCTTATAAAC+AGG | - | chr7.3:40540767-40540786 | None:intergenic | 30.0% | |
| ATTTATCCTTAACAACTGGA+TGG | - | chr7.3:40542100-40542119 | None:intergenic | 30.0% | |
| CAGGAACTTTCTTATAAACA+GGG | - | chr7.3:40540766-40540785 | None:intergenic | 30.0% | |
| CTTAAGGATAATTTCTTTGG+TGG | + | chr7.3:40541936-40541955 | MS.gene94268:CDS | 30.0% | |
| GACACTGTATATTATATGCA+GGG | - | chr7.3:40541060-40541079 | None:intergenic | 30.0% | |
| GAGCTTAAGGATAATTTCTT+TGG | + | chr7.3:40541933-40541952 | MS.gene94268:CDS | 30.0% | |
| TACCTTATCATCTATGAACT+TGG | - | chr7.3:40540915-40540934 | None:intergenic | 30.0% | |
| TGTATATTATATGCAGGGAT+CGG | - | chr7.3:40541055-40541074 | None:intergenic | 30.0% | |
| ! | TTTGTTGCTTCTTGTACAAT+GGG | - | chr7.3:40542014-40542033 | None:intergenic | 30.0% |
| !! | CAATATTGGATTTTGTTTCC+AGG | - | chr7.3:40540852-40540871 | None:intergenic | 30.0% |
| ATACGCTAGAGAGACATTTA+GGG | - | chr7.3:40541528-40541547 | None:intergenic | 35.0% | |
| ATATTTCACAAGCATGTGGA+TGG | + | chr7.3:40541149-40541168 | MS.gene94268:intron | 35.0% | |
| ATCACAAGGGATTCTGATAT+AGG | - | chr7.3:40540809-40540828 | None:intergenic | 35.0% | |
| CAATATCAGTTAGAAAAGGC+AGG | + | chr7.3:40540710-40540729 | MS.gene94268:CDS | 35.0% | |
| GAATTACGTTCATGTGATCT+CGG | - | chr7.3:40541096-40541115 | None:intergenic | 35.0% | |
| GACATACTCAAGAATCACAA+GGG | - | chr7.3:40540822-40540841 | None:intergenic | 35.0% | |
| GACCAAGTTCATAGATGATA+AGG | + | chr7.3:40540910-40540929 | MS.gene94268:CDS | 35.0% | |
| GAGATTGCTCTAACATTGAA+GGG | + | chr7.3:40540677-40540696 | MS.gene94268:CDS | 35.0% | |
| GGACACTGTATATTATATGC+AGG | - | chr7.3:40541061-40541080 | None:intergenic | 35.0% | |
| GGCAATTTATCCTTAACAAC+TGG | - | chr7.3:40542104-40542123 | None:intergenic | 35.0% | |
| TAAGGATCAGAAGGCAATAT+TGG | - | chr7.3:40540866-40540885 | None:intergenic | 35.0% | |
| TATACGCTAGAGAGACATTT+AGG | - | chr7.3:40541529-40541548 | None:intergenic | 35.0% | |
| TGACTCCATTTGTAAAGCTT+GGG | - | chr7.3:40542065-40542084 | None:intergenic | 35.0% | |
| TTGACTCCATTTGTAAAGCT+TGG | - | chr7.3:40542066-40542085 | None:intergenic | 35.0% | |
| ! | CAGGAAAATGTGAAGCTTTT+TGG | + | chr7.3:40540623-40540642 | MS.gene94268:CDS | 35.0% |
| ! | CTGCCTTTTCTAACTGATAT+TGG | - | chr7.3:40540712-40540731 | None:intergenic | 35.0% |
| ! | GTTTGTTGCTTCTTGTACAA+TGG | - | chr7.3:40542015-40542034 | None:intergenic | 35.0% |
| ! | TTGTTGCTTCTTGTACAATG+GGG | - | chr7.3:40542013-40542032 | None:intergenic | 35.0% |
| !! | TATAATGACTTGTGACGGAT+TGG | - | chr7.3:40541647-40541666 | None:intergenic | 35.0% |
| !!! | TGTGAAGCTTTTTGGAATGA+TGG | + | chr7.3:40540631-40540650 | MS.gene94268:CDS | 35.0% |
| AGAACGTGAGAAAGCTATTG+AGG | + | chr7.3:40541878-40541897 | MS.gene94268:CDS | 40.0% | |
| ATCCTTAACAACTGGATGGT+TGG | - | chr7.3:40542096-40542115 | None:intergenic | 40.0% | |
| ATGGAAGGTTTAGGAGTGAA+AGG | + | chr7.3:40541303-40541322 | MS.gene94268:intron | 40.0% | |
| CGACATACTCAAGAATCACA+AGG | - | chr7.3:40540823-40540842 | None:intergenic | 40.0% | |
| GATAAATTGCCTCCTAGAGA+AGG | + | chr7.3:40542113-40542132 | MS.gene94268:CDS | 40.0% | |
| GGAGATTGCTCTAACATTGA+AGG | + | chr7.3:40540676-40540695 | MS.gene94268:CDS | 40.0% | |
| GGATAATTTCTTTGGTGGAG+AGG | + | chr7.3:40541941-40541960 | MS.gene94268:CDS | 40.0% | |
| TAAGCCAAAAGTCCTTCTCT+AGG | - | chr7.3:40542128-40542147 | None:intergenic | 40.0% | |
| TGATCCTTACAAAAGAGCCT+TGG | + | chr7.3:40540877-40540896 | MS.gene94268:CDS | 40.0% | |
| TGGAAGGTTTAGGAGTGAAA+GGG | + | chr7.3:40541304-40541323 | MS.gene94268:intron | 40.0% | |
| TGTGTTTGGATGGAAGGTTT+AGG | + | chr7.3:40541294-40541313 | MS.gene94268:intron | 40.0% | |
| TGTGTTTGGATTGAGGGTTT+AGG | - | chr7.3:40541505-40541524 | None:intergenic | 40.0% | |
| TTAGGGTGTGTTTGGATTGA+GGG | - | chr7.3:40541511-40541530 | None:intergenic | 40.0% | |
| TTTGGATTGAGGGTTTAGGA+GGG | - | chr7.3:40541501-40541520 | None:intergenic | 40.0% | |
| ! | AACTTCACTAAGGGTGTGTT+TGG | + | chr7.3:40541280-40541299 | MS.gene94268:intron | 40.0% |
| ! | AGAGACATTTAGGGTGTGTT+TGG | - | chr7.3:40541519-40541538 | None:intergenic | 40.0% |
| ! | ATTTGAAGCGGTTCTCAATG+TGG | - | chr7.3:40541553-40541572 | None:intergenic | 40.0% |
| ! | CTGCAGTCTTCATAGCTTTT+TGG | + | chr7.3:40541985-40542004 | MS.gene94268:CDS | 40.0% |
| ! | GCTCTTTTGTAAGGATCAGA+AGG | - | chr7.3:40540875-40540894 | None:intergenic | 40.0% |
| ! | TCTTTATTTGTGCGCATGTG+TGG | + | chr7.3:40541121-40541140 | MS.gene94268:intron | 40.0% |
| ! | TTTAGGGTGTGTTTGGATTG+AGG | - | chr7.3:40541512-40541531 | None:intergenic | 40.0% |
| AAGTCCATTTGTGAGTAGGG+TGG | + | chr7.3:40540655-40540674 | MS.gene94268:CDS | 45.0% | |
| ATCTCCACCCTACTCACAAA+TGG | - | chr7.3:40540662-40540681 | None:intergenic | 45.0% | |
| CACACCCTTAGTGAAGTTTG+TGG | - | chr7.3:40541278-40541297 | None:intergenic | 45.0% | |
| CACCAACCATCCAGTTGTTA+AGG | + | chr7.3:40542091-40542110 | MS.gene94268:CDS | 45.0% | |
| GGCAAGTCCATTTGTGAGTA+GGG | + | chr7.3:40540652-40540671 | MS.gene94268:CDS | 45.0% | |
| GTTTGGATTGAGGGTTTAGG+AGG | - | chr7.3:40541502-40541521 | None:intergenic | 45.0% | |
| TAGGAGTGAAAGGGAGATGA+GGG | + | chr7.3:40541313-40541332 | MS.gene94268:intron | 45.0% | |
| TCATGTGATCTCGGTTCAGT+TGG | - | chr7.3:40541087-40541106 | None:intergenic | 45.0% | |
| TGGCAAGTCCATTTGTGAGT+AGG | + | chr7.3:40540651-40540670 | MS.gene94268:CDS | 45.0% | |
| TTAGGAGTGAAAGGGAGATG+AGG | + | chr7.3:40541312-40541331 | MS.gene94268:intron | 45.0% | |
| TTCTTTGGTGGAGAGGAGAT+TGG | + | chr7.3:40541948-40541967 | MS.gene94268:CDS | 45.0% | |
| TTGAGTATGTCGATGAGACC+TGG | + | chr7.3:40540831-40540850 | MS.gene94268:CDS | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | - | chr7.3:40541500-40541519 | None:intergenic | 45.0% | |
| ! | ACCAGTGTTTAAGTGCTGCA+CGG | + | chr7.3:40541829-40541848 | MS.gene94268:intron | 45.0% |
| ! | TAAGGGTGTGTTTGGATGGA+AGG | + | chr7.3:40541288-40541307 | MS.gene94268:intron | 45.0% |
| ! | TCACTAAGGGTGTGTTTGGA+TGG | + | chr7.3:40541284-40541303 | MS.gene94268:intron | 45.0% |
| ! | TGATCTCGGTTCAGTTGGTA+GGG | - | chr7.3:40541082-40541101 | None:intergenic | 45.0% |
| AGGGATCGGAGTTCGAACTT+CGG | - | chr7.3:40541041-40541060 | None:intergenic | 50.0% | |
| GCCAAAAGTCCTTCTCTAGG+AGG | - | chr7.3:40542125-40542144 | None:intergenic | 50.0% | |
| GTGATCTCGGTTCAGTTGGT+AGG | - | chr7.3:40541083-40541102 | None:intergenic | 50.0% | |
| TCCGTGCAGCACTTAAACAC+TGG | - | chr7.3:40541833-40541852 | None:intergenic | 50.0% | |
| ! | AAAGAGCCTTGGCTCGTTTC+TGG | + | chr7.3:40540888-40540907 | MS.gene94268:CDS | 50.0% |
| ! | CGAGCCAAGGCTCTTTTGTA+AGG | - | chr7.3:40540884-40540903 | None:intergenic | 50.0% |
| ! | GCCTCCTAGAGAAGGACTTT+TGG | + | chr7.3:40542121-40542140 | MS.gene94268:CDS | 50.0% |
| ATTGAGGGTTTAGGAGGGGC+AGG | - | chr7.3:40541496-40541515 | None:intergenic | 55.0% | |
| CTTGGTCCAGAAACGAGCCA+AGG | - | chr7.3:40540897-40540916 | None:intergenic | 55.0% | |
| TTGAGGGTTTAGGAGGGGCA+GGG | - | chr7.3:40541495-40541514 | None:intergenic | 55.0% | |
| GGTTTAGGAGGGGCAGGGAG+AGG | - | chr7.3:40541490-40541509 | None:intergenic | 65.0% | |
| TAGGAGGGGCAGGGAGAGGA+GGG | - | chr7.3:40541486-40541505 | None:intergenic | 65.0% | |
| TTAGGAGGGGCAGGGAGAGG+AGG | - | chr7.3:40541487-40541506 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 40540611 | 40542187 | 40540611 | ID=MS.gene94268 |
| chr7.3 | mRNA | 40540611 | 40542187 | 40540611 | ID=MS.gene94268.t1;Parent=MS.gene94268 |
| chr7.3 | exon | 40540611 | 40540931 | 40540611 | ID=MS.gene94268.t1.exon1;Parent=MS.gene94268.t1 |
| chr7.3 | CDS | 40540611 | 40540931 | 40540611 | ID=cds.MS.gene94268.t1;Parent=MS.gene94268.t1 |
| chr7.3 | exon | 40541834 | 40542187 | 40541834 | ID=MS.gene94268.t1.exon2;Parent=MS.gene94268.t1 |
| chr7.3 | CDS | 40541834 | 40542187 | 40541834 | ID=cds.MS.gene94268.t1;Parent=MS.gene94268.t1 |
| Gene Sequence |
| Protein sequence |
