Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94652.t1 | ABE80135.1 | 98.3 | 172 | 3 | 0 | 1 | 172 | 1 | 172 | 8.80E-94 | 352.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94652.t1 | Q9XFK7 | 76.9 | 173 | 39 | 1 | 1 | 172 | 1 | 173 | 3.8e-77 | 288.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94652.t1 | G7LDA2 | 98.3 | 172 | 3 | 0 | 1 | 172 | 2 | 173 | 6.4e-94 | 352.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene94652 | MS.gene042580 | PPI |
| MS.gene94652 | MS.gene98252 | PPI |
| MS.gene94652 | MS.gene000759 | PPI |
| MS.gene94652 | MS.gene51913 | PPI |
| MS.gene94652 | MS.gene43049 | PPI |
| MS.gene94652 | MS.gene034467 | PPI |
| MS.gene94652 | MS.gene35397 | PPI |
| MS.gene94652 | MS.gene51950 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94652.t1 | MTR_8g106840 | 98.256 | 172 | 3 | 0 | 1 | 172 | 2 | 173 | 8.90e-125 | 348 |
| MS.gene94652.t1 | MTR_0020s0120 | 54.913 | 173 | 76 | 2 | 1 | 172 | 1 | 172 | 9.19e-65 | 196 |
| MS.gene94652.t1 | MTR_0020s0120 | 53.757 | 173 | 71 | 3 | 1 | 172 | 1 | 165 | 1.84e-61 | 187 |
| MS.gene94652.t1 | MTR_7g104460 | 53.529 | 170 | 78 | 1 | 4 | 172 | 5 | 174 | 3.65e-61 | 187 |
| MS.gene94652.t1 | MTR_2g086270 | 48.555 | 173 | 88 | 1 | 1 | 172 | 1 | 173 | 1.10e-56 | 176 |
| MS.gene94652.t1 | MTR_6g033040 | 52.410 | 166 | 77 | 2 | 2 | 166 | 3 | 167 | 2.63e-55 | 172 |
| MS.gene94652.t1 | MTR_7g084970 | 49.419 | 172 | 85 | 2 | 2 | 172 | 3 | 173 | 1.35e-54 | 171 |
| MS.gene94652.t1 | MTR_1g060190 | 49.080 | 163 | 81 | 2 | 2 | 162 | 3 | 165 | 2.17e-51 | 162 |
| MS.gene94652.t1 | MTR_7g006630 | 51.829 | 164 | 76 | 3 | 5 | 166 | 1 | 163 | 4.19e-48 | 154 |
| MS.gene94652.t1 | MTR_7g006690 | 51.515 | 165 | 77 | 3 | 4 | 166 | 5 | 168 | 1.19e-47 | 153 |
| MS.gene94652.t1 | MTR_7g085020 | 47.531 | 162 | 83 | 2 | 6 | 166 | 8 | 168 | 1.21e-45 | 148 |
| MS.gene94652.t1 | MTR_7g085040 | 46.012 | 163 | 82 | 4 | 5 | 166 | 6 | 163 | 2.17e-42 | 139 |
| MS.gene94652.t1 | MTR_5g078320 | 82.667 | 75 | 13 | 0 | 98 | 172 | 15 | 89 | 2.14e-39 | 129 |
| MS.gene94652.t1 | MTR_7g052830 | 82.353 | 34 | 6 | 0 | 67 | 100 | 1 | 34 | 4.97e-13 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94652.t1 | AT1G18100 | 76.879 | 173 | 39 | 1 | 1 | 172 | 1 | 173 | 8.14e-100 | 285 |
| MS.gene94652.t1 | AT5G62040 | 49.425 | 174 | 86 | 2 | 1 | 172 | 1 | 174 | 1.81e-57 | 178 |
| MS.gene94652.t1 | AT2G27550 | 51.462 | 171 | 81 | 2 | 4 | 172 | 5 | 175 | 4.40e-55 | 172 |
| MS.gene94652.t1 | AT5G03840 | 45.562 | 169 | 91 | 1 | 5 | 172 | 9 | 177 | 1.77e-53 | 168 |
| MS.gene94652.t1 | AT4G20370 | 52.469 | 162 | 75 | 2 | 6 | 166 | 7 | 167 | 5.19e-53 | 167 |
| MS.gene94652.t1 | AT1G65480 | 50.000 | 162 | 79 | 2 | 6 | 166 | 7 | 167 | 1.90e-52 | 165 |
| MS.gene94652.t1 | AT1G65480 | 50.000 | 162 | 79 | 2 | 6 | 166 | 51 | 211 | 3.26e-52 | 166 |
Find 60 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAGCCTGAGGCTCCTTC+TGG | 0.225327 | 4.1:-623128 | None:intergenic |
| CTCACGCATGTTTGGCTCAC+TGG | 0.230824 | 4.1:-621447 | None:intergenic |
| CAACCATTTGTGACATGTTT+AGG | 0.256839 | 4.1:-621225 | None:intergenic |
| TCCTTATATATACCTCGCTT+TGG | 0.299974 | 4.1:-621658 | None:intergenic |
| GGCTGCCTCGGTTGATCCTT+TGG | 0.316826 | 4.1:+621131 | MS.gene94652:CDS |
| CGCTTTGGGTTTGTTCCTCC+AGG | 0.320975 | 4.1:-621643 | None:intergenic |
| TCACTGGGGCTTGGTGCATC+TGG | 0.323583 | 4.1:-621431 | None:intergenic |
| GGCTGCTCAACCATTCCTAT+TGG | 0.334282 | 4.1:-623021 | None:intergenic |
| TGGATACCAACCGGTGGTTT+TGG | 0.353965 | 4.1:-622964 | None:intergenic |
| AGGATCGTGGTTGACATTCC+TGG | 0.370693 | 4.1:+621625 | MS.gene94652:intron |
| CCTTATATATACCTCGCTTT+GGG | 0.371664 | 4.1:-621657 | None:intergenic |
| CTTAGCCTGAGGCTCCTTCT+GGG | 0.376302 | 4.1:-623127 | None:intergenic |
| AAGGAGATTCTTCCATATAT+AGG | 0.387575 | 4.1:+622940 | MS.gene94652:CDS |
| TCACGCATGTTTGGCTCACT+GGG | 0.389982 | 4.1:-621446 | None:intergenic |
| CCACCCAAGGTCACTCTCAC+TGG | 0.397435 | 4.1:+621276 | MS.gene94652:CDS |
| ATGTTTGGCTCACTGGGGCT+TGG | 0.397820 | 4.1:-621440 | None:intergenic |
| TGTATCAGCTCACGCATGTT+TGG | 0.403877 | 4.1:-621455 | None:intergenic |
| TGGTATCCACCGATACATAT+TGG | 0.404436 | 4.1:+622978 | MS.gene94652:CDS |
| TTTGAGCAGAAGGGACCAAT+AGG | 0.418830 | 4.1:+623006 | MS.gene94652:CDS |
| TTGGTGGTTGGTCGTGTGAT+TGG | 0.419912 | 4.1:+621150 | MS.gene94652:CDS |
| CCAGTGAGAGTGACCTTGGG+TGG | 0.438911 | 4.1:-621276 | None:intergenic |
| GTTGGTATGTCTGTTTACTT+TGG | 0.440691 | 4.1:+621201 | MS.gene94652:CDS |
| GGTCCTAAACATGTCACAAA+TGG | 0.480505 | 4.1:+621222 | MS.gene94652:CDS |
| TCGGTTGATCCTTTGGTGGT+TGG | 0.485892 | 4.1:+621138 | MS.gene94652:CDS |
| ACATGCGTGAGCTGATACAC+TGG | 0.489252 | 4.1:+621459 | MS.gene94652:CDS |
| GACATGTTCATTCCATCTGT+TGG | 0.504699 | 4.1:+621183 | MS.gene94652:CDS |
| GTTTCCAGTGAGAGTGACCT+TGG | 0.510114 | 4.1:-621280 | None:intergenic |
| AGAAGGAGCCTCAGGCTAAG+AGG | 0.523160 | 4.1:+623130 | MS.gene94652:CDS |
| TTAAAGTAGACTGTAGCTAC+AGG | 0.523873 | 4.1:-623102 | None:intergenic |
| TGCCTCGGTTGATCCTTTGG+TGG | 0.525528 | 4.1:+621134 | MS.gene94652:CDS |
| ATGTATCGGTGGATACCAAC+CGG | 0.527511 | 4.1:-622973 | None:intergenic |
| TAACTCCCAGAAGGAGCCTC+AGG | 0.529044 | 4.1:+623122 | MS.gene94652:CDS |
| GGTCACTCTCACTGGAAACA+TGG | 0.545850 | 4.1:+621284 | MS.gene94652:CDS |
| TTTGCAAGTCAATTGAACCT+TGG | 0.546466 | 4.1:+623075 | MS.gene94652:CDS |
| GGTGGGTTGATAGCCATGGA+TGG | 0.548514 | 4.1:-621258 | None:intergenic |
| CAGTGAGAGTGACCTTGGGT+GGG | 0.551987 | 4.1:-621275 | None:intergenic |
| TTTCCAGTGAGAGTGACCTT+GGG | 0.557115 | 4.1:-621279 | None:intergenic |
| CTTGGGTGGGTTGATAGCCA+TGG | 0.562286 | 4.1:-621262 | None:intergenic |
| GGTGATCATGATGGCTGCCT+CGG | 0.563998 | 4.1:+621119 | None:intergenic |
| CAAACAAAACCAATATGTAT+CGG | 0.565284 | 4.1:-622987 | None:intergenic |
| AGTGTTGAAACTGACTCTAC+TGG | 0.584655 | 4.1:-623046 | None:intergenic |
| TAAACAGACATACCAACAGA+TGG | 0.587934 | 4.1:-621195 | None:intergenic |
| ATCACACGACCAACCACCAA+AGG | 0.596985 | 4.1:-621147 | None:intergenic |
| TTGTGACATAAAGCCATCCA+TGG | 0.620992 | 4.1:+621245 | MS.gene94652:CDS |
| ATTGGCTGACCAGAGTGTAG+AGG | 0.622213 | 4.1:-621311 | None:intergenic |
| ACAAAACCAATATGTATCGG+TGG | 0.631832 | 4.1:-622984 | None:intergenic |
| CACGCATGTTTGGCTCACTG+GGG | 0.635008 | 4.1:-621445 | None:intergenic |
| CATGGATAACCTCTACACTC+TGG | 0.637951 | 4.1:+621302 | MS.gene94652:CDS |
| CATGGCTATCAACCCACCCA+AGG | 0.643435 | 4.1:+621263 | MS.gene94652:CDS |
| AGTCTACTTTAACTCCCAGA+AGG | 0.644955 | 4.1:+623113 | MS.gene94652:CDS |
| GCAGAAGGGACCAATAGGAA+TGG | 0.646075 | 4.1:+623011 | MS.gene94652:CDS |
| ATAGGACCAAAACCACCGGT+TGG | 0.655362 | 4.1:+622958 | MS.gene94652:CDS |
| ATATATAGGACCAAAACCAC+CGG | 0.662745 | 4.1:+622954 | MS.gene94652:CDS |
| GTTCAACGCCTCTTAGCCTG+AGG | 0.669979 | 4.1:-623138 | None:intergenic |
| TTGAAACTGACTCTACTGGT+TGG | 0.690180 | 4.1:-623042 | None:intergenic |
| GGAGGAACAAACCCAAAGCG+AGG | 0.693274 | 4.1:+621646 | MS.gene94652:CDS |
| AACCACCAAAGGATCAACCG+AGG | 0.707404 | 4.1:-621136 | None:intergenic |
| ATCGTGGTTGACATTCCTGG+AGG | 0.727325 | 4.1:+621628 | MS.gene94652:CDS |
| TATCGGTGGATACCAACCGG+TGG | 0.737473 | 4.1:-622970 | None:intergenic |
| CTGTAGCTACAGGAAGACCA+AGG | 0.739753 | 4.1:-623092 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCATATCAAAATAAAAAT+AGG | - | chr4.1:621577-621596 | None:intergenic | 10.0% |
| !! | TTCATATCAAAATAAAAATA+GGG | - | chr4.1:621576-621595 | None:intergenic | 10.0% |
| !!! | TGAGTTTATATAATTTTTTT+TGG | + | chr4.1:621785-621804 | MS.gene94652:intron | 10.0% |
| !! | AAATTATAGAGTATGTATAA+AGG | - | chr4.1:622854-622873 | None:intergenic | 15.0% |
| !! | TCAAAAAGAAAAATAATTTG+TGG | - | chr4.1:622148-622167 | None:intergenic | 15.0% |
| !! | TTTACGAAAAAATAAATGTT+TGG | - | chr4.1:622298-622317 | None:intergenic | 15.0% |
| !!! | AACCTTAATTAATTTTTCTT+TGG | + | chr4.1:622907-622926 | MS.gene94652:intron | 15.0% |
| !!! | ATAAGGAAATAATTTTTGAT+CGG | + | chr4.1:621674-621693 | MS.gene94652:intron | 15.0% |
| !!! | CAAATTATTTTTCTTTTTGA+AGG | + | chr4.1:622148-622167 | MS.gene94652:intron | 15.0% |
| !! | ATCAAAATAAAAATAGGGAA+GGG | - | chr4.1:621571-621590 | None:intergenic | 20.0% |
| !! | CACCAAAGAAAAATTAATTA+AGG | - | chr4.1:622912-622931 | None:intergenic | 20.0% |
| !! | TATCAAAATAAAAATAGGGA+AGG | - | chr4.1:621572-621591 | None:intergenic | 20.0% |
| !! | TGCATATAAAATATTGCTAA+AGG | + | chr4.1:622571-622590 | MS.gene94652:intron | 20.0% |
| !!! | ATTATTTTTCTTTTTGAAGG+AGG | + | chr4.1:622151-622170 | MS.gene94652:intron | 20.0% |
| !!! | CAAAAAAGTATGAAGTATTT+GGG | - | chr4.1:622363-622382 | None:intergenic | 20.0% |
| !!! | TCAAAAAAGTATGAAGTATT+TGG | - | chr4.1:622364-622383 | None:intergenic | 20.0% |
| !!! | TTGTGATATTTTTTACAAAG+AGG | - | chr4.1:621972-621991 | None:intergenic | 20.0% |
| !!! | TTGTTTTGTAATTTTTAGCA+AGG | - | chr4.1:622680-622699 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTATATTGAATCC+TGG | + | chr4.1:622057-622076 | MS.gene94652:intron | 20.0% |
| !!! | TTTTCTTCTTATTATGTACA+CGG | + | chr4.1:621714-621733 | MS.gene94652:intron | 20.0% |
| ! | AAAAACTAGTTAACTAGGTA+TGG | - | chr4.1:622245-622264 | None:intergenic | 25.0% |
| ! | CAAACAAAACCAATATGTAT+CGG | - | chr4.1:622990-623009 | None:intergenic | 25.0% |
| ! | TCAAAATAAAAATAGGGAAG+GGG | - | chr4.1:621570-621589 | None:intergenic | 25.0% |
| ! | TCAAAGAGATACATATTGAT+TGG | - | chr4.1:621332-621351 | None:intergenic | 25.0% |
| !! | AACATGCATGAATCTATTTT+CGG | + | chr4.1:621929-621948 | MS.gene94652:intron | 25.0% |
| !!! | ATTGTTCTCTTTAAAACAAG+TGG | - | chr4.1:622529-622548 | None:intergenic | 25.0% |
| !!! | CTTCAAGTTTCCATTTTTTA+AGG | + | chr4.1:621605-621624 | MS.gene94652:intron | 25.0% |
| !!! | GCATTTCTAAAATCAACAAT+CGG | - | chr4.1:621885-621904 | None:intergenic | 25.0% |
| !!! | GTATATGATCAAAGTTTTGA+TGG | + | chr4.1:621368-621387 | MS.gene94652:intron | 25.0% |
| !!! | TGATTTTAGAAATGCTTGTT+TGG | + | chr4.1:621890-621909 | MS.gene94652:intron | 25.0% |
| !!! | TTCATGCATGTTGATTTTTT+TGG | - | chr4.1:621921-621940 | None:intergenic | 25.0% |
| !!! | TTTTTTTGGATGACATACAA+TGG | + | chr4.1:621799-621818 | MS.gene94652:intron | 25.0% |
| AAGGAGATTCTTCCATATAT+AGG | + | chr4.1:622940-622959 | MS.gene94652:CDS | 30.0% | |
| AGTGCAAAAACTAGTTAACT+AGG | - | chr4.1:622250-622269 | None:intergenic | 30.0% | |
| CGTTTGTTTGTGTAAATCAA+CGG | + | chr4.1:622787-622806 | MS.gene94652:intron | 30.0% | |
| ! | GTTGATTTACACAAACAAAC+GGG | - | chr4.1:622788-622807 | None:intergenic | 30.0% |
| !! | AGATACACCAATTTTGAAGA+CGG | + | chr4.1:622406-622425 | MS.gene94652:intron | 30.0% |
| !! | CGTTGATTTACACAAACAAA+CGG | - | chr4.1:622789-622808 | None:intergenic | 30.0% |
| !!! | AGTTAACTAGTTTTTGCACT+CGG | + | chr4.1:622250-622269 | MS.gene94652:intron | 30.0% |
| !!! | TAATTTTTCTTTGGTGTTGC+AGG | + | chr4.1:622916-622935 | MS.gene94652:intron | 30.0% |
| !!! | TTTCCATTTTTTAAGGATCG+TGG | + | chr4.1:621612-621631 | MS.gene94652:intron | 30.0% |
| ACAAAACCAATATGTATCGG+TGG | - | chr4.1:622987-623006 | None:intergenic | 35.0% | |
| ACGGGCATGATTTATGTTAA+AGG | - | chr4.1:622770-622789 | None:intergenic | 35.0% | |
| ATATATAGGACCAAAACCAC+CGG | + | chr4.1:622954-622973 | MS.gene94652:CDS | 35.0% | |
| CAACCACGATCCTTAAAAAA+TGG | - | chr4.1:621618-621637 | None:intergenic | 35.0% | |
| CAACCATTTGTGACATGTTT+AGG | - | chr4.1:621228-621247 | None:intergenic | 35.0% | |
| CCTTATATATACCTCGCTTT+GGG | - | chr4.1:621660-621679 | None:intergenic | 35.0% | |
| GTTGGTATGTCTGTTTACTT+TGG | + | chr4.1:621201-621220 | MS.gene94652:CDS | 35.0% | |
| TAAAATCAACAATCGGCAAG+TGG | - | chr4.1:621878-621897 | None:intergenic | 35.0% | |
| TAAACAGACATACCAACAGA+TGG | - | chr4.1:621198-621217 | None:intergenic | 35.0% | |
| TCACTTATCAAGATGTTGCA+TGG | + | chr4.1:621761-621780 | MS.gene94652:intron | 35.0% | |
| TCCTTATATATACCTCGCTT+TGG | - | chr4.1:621661-621680 | None:intergenic | 35.0% | |
| TTAAAGTAGACTGTAGCTAC+AGG | - | chr4.1:623105-623124 | None:intergenic | 35.0% | |
| TTTGCAAGTCAATTGAACCT+TGG | + | chr4.1:623075-623094 | MS.gene94652:CDS | 35.0% | |
| !! | GATACACCAATTTTGAAGAC+GGG | + | chr4.1:622407-622426 | MS.gene94652:intron | 35.0% |
| !!! | ATTGGTTTTGTTTGAGCAGA+AGG | + | chr4.1:622996-623015 | MS.gene94652:CDS | 35.0% |
| !!! | TTGGTTTTGTTTGAGCAGAA+GGG | + | chr4.1:622997-623016 | MS.gene94652:CDS | 35.0% |
| AAGACACCCGTCTTCAAAAT+TGG | - | chr4.1:622416-622435 | None:intergenic | 40.0% | |
| AGTCTACTTTAACTCCCAGA+AGG | + | chr4.1:623113-623132 | MS.gene94652:CDS | 40.0% | |
| AGTGTGAGAAGCTCATTTGT+TGG | - | chr4.1:622038-622057 | None:intergenic | 40.0% | |
| CCCAAAGCGAGGTATATATA+AGG | + | chr4.1:621657-621676 | MS.gene94652:intron | 40.0% | |
| GACATGTTCATTCCATCTGT+TGG | + | chr4.1:621183-621202 | MS.gene94652:CDS | 40.0% | |
| GGTCCTAAACATGTCACAAA+TGG | + | chr4.1:621222-621241 | MS.gene94652:CDS | 40.0% | |
| TGGAAGACAACATTGAATCC+AGG | - | chr4.1:622078-622097 | None:intergenic | 40.0% | |
| TGGTATCCACCGATACATAT+TGG | + | chr4.1:622978-622997 | MS.gene94652:CDS | 40.0% | |
| TTGTGACATAAAGCCATCCA+TGG | + | chr4.1:621245-621264 | MS.gene94652:CDS | 40.0% | |
| ! | AGTGTTGAAACTGACTCTAC+TGG | - | chr4.1:623049-623068 | None:intergenic | 40.0% |
| ! | CATTTGTTGGATTGAAGCAG+TGG | - | chr4.1:622025-622044 | None:intergenic | 40.0% |
| ! | TTGAAACTGACTCTACTGGT+TGG | - | chr4.1:623045-623064 | None:intergenic | 40.0% |
| !! | TTTCTTTGGTGTTGCAGGAA+AGG | + | chr4.1:622921-622940 | MS.gene94652:intron | 40.0% |
| !!! | GGTGGTTTTGGTCCTATATA+TGG | - | chr4.1:622955-622974 | None:intergenic | 40.0% |
| ACGTTTCCTGTGTGACACAT+TGG | - | chr4.1:622505-622524 | None:intergenic | 45.0% | |
| AGATCATCACACGTAGCATG+TGG | + | chr4.1:622442-622461 | MS.gene94652:intron | 45.0% | |
| CATGGATAACCTCTACACTC+TGG | + | chr4.1:621302-621321 | MS.gene94652:CDS | 45.0% | |
| TCATGACCAATGTGTCACAC+AGG | + | chr4.1:622496-622515 | MS.gene94652:intron | 45.0% | |
| TGCTACGTGTGATGATCTCA+AGG | - | chr4.1:622440-622459 | None:intergenic | 45.0% | |
| TGGATTGAAGCAGTGGAACA+AGG | - | chr4.1:622018-622037 | None:intergenic | 45.0% | |
| TGTATCAGCTCACGCATGTT+TGG | - | chr4.1:621458-621477 | None:intergenic | 45.0% | |
| TTTCCAGTGAGAGTGACCTT+GGG | - | chr4.1:621282-621301 | None:intergenic | 45.0% | |
| TTTGAGCAGAAGGGACCAAT+AGG | + | chr4.1:623006-623025 | MS.gene94652:CDS | 45.0% | |
| ! | ATGTATCGGTGGATACCAAC+CGG | - | chr4.1:622976-622995 | None:intergenic | 45.0% |
| ! | TGGCTTGCATGTCACAAAAG+TGG | + | chr4.1:622462-622481 | MS.gene94652:intron | 45.0% |
| AACCACCAAAGGATCAACCG+AGG | - | chr4.1:621139-621158 | None:intergenic | 50.0% | |
| ACATGCGTGAGCTGATACAC+TGG | + | chr4.1:621459-621478 | MS.gene94652:CDS | 50.0% | |
| AGGATCGTGGTTGACATTCC+TGG | + | chr4.1:621625-621644 | MS.gene94652:intron | 50.0% | |
| ATAGGACCAAAACCACCGGT+TGG | + | chr4.1:622958-622977 | MS.gene94652:CDS | 50.0% | |
| ATCACACGACCAACCACCAA+AGG | - | chr4.1:621150-621169 | None:intergenic | 50.0% | |
| ATCGTGGTTGACATTCCTGG+AGG | + | chr4.1:621628-621647 | MS.gene94652:CDS | 50.0% | |
| ATTGGCTGACCAGAGTGTAG+AGG | - | chr4.1:621314-621333 | None:intergenic | 50.0% | |
| CTGTAGCTACAGGAAGACCA+AGG | - | chr4.1:623095-623114 | None:intergenic | 50.0% | |
| GAAGCACGCACGAATAGACA+TGG | - | chr4.1:622814-622833 | None:intergenic | 50.0% | |
| GCAGAAGGGACCAATAGGAA+TGG | + | chr4.1:623011-623030 | MS.gene94652:CDS | 50.0% | |
| GGCTGCTCAACCATTCCTAT+TGG | - | chr4.1:623024-623043 | None:intergenic | 50.0% | |
| GGTCACTCTCACTGGAAACA+TGG | + | chr4.1:621284-621303 | MS.gene94652:CDS | 50.0% | |
| GTTTCCAGTGAGAGTGACCT+TGG | - | chr4.1:621283-621302 | None:intergenic | 50.0% | |
| ! | TCACGCATGTTTGGCTCACT+GGG | - | chr4.1:621449-621468 | None:intergenic | 50.0% |
| ! | TCGGTTGATCCTTTGGTGGT+TGG | + | chr4.1:621138-621157 | MS.gene94652:CDS | 50.0% |
| ! | TGGATACCAACCGGTGGTTT+TGG | - | chr4.1:622967-622986 | None:intergenic | 50.0% |
| ! | TTGGTGGTTGGTCGTGTGAT+TGG | + | chr4.1:621150-621169 | MS.gene94652:CDS | 50.0% |
| AGAAGGAGCCTCAGGCTAAG+AGG | + | chr4.1:623130-623149 | MS.gene94652:CDS | 55.0% | |
| CAGTGAGAGTGACCTTGGGT+GGG | - | chr4.1:621278-621297 | None:intergenic | 55.0% | |
| CATGCAGCACAGGTGGAAGA+TGG | - | chr4.1:622098-622117 | None:intergenic | 55.0% | |
| CATGGCTATCAACCCACCCA+AGG | + | chr4.1:621263-621282 | MS.gene94652:CDS | 55.0% | |
| CTTAGCCTGAGGCTCCTTCT+GGG | - | chr4.1:623130-623149 | None:intergenic | 55.0% | |
| GGAGGAACAAACCCAAAGCG+AGG | + | chr4.1:621646-621665 | MS.gene94652:CDS | 55.0% | |
| TAACTCCCAGAAGGAGCCTC+AGG | + | chr4.1:623122-623141 | MS.gene94652:CDS | 55.0% | |
| TATCGGTGGATACCAACCGG+TGG | - | chr4.1:622973-622992 | None:intergenic | 55.0% | |
| TCTTAGCCTGAGGCTCCTTC+TGG | - | chr4.1:623131-623150 | None:intergenic | 55.0% | |
| TCTTCCACCTGTGCTGCATG+TGG | + | chr4.1:622098-622117 | MS.gene94652:intron | 55.0% | |
| TGCCTCGGTTGATCCTTTGG+TGG | + | chr4.1:621134-621153 | MS.gene94652:CDS | 55.0% | |
| ! | ATGTTTGGCTCACTGGGGCT+TGG | - | chr4.1:621443-621462 | None:intergenic | 55.0% |
| ! | CACGCATGTTTGGCTCACTG+GGG | - | chr4.1:621448-621467 | None:intergenic | 55.0% |
| ! | CGCTTTGGGTTTGTTCCTCC+AGG | - | chr4.1:621646-621665 | None:intergenic | 55.0% |
| ! | CTCACGCATGTTTGGCTCAC+TGG | - | chr4.1:621450-621469 | None:intergenic | 55.0% |
| !! | CTTGGGTGGGTTGATAGCCA+TGG | - | chr4.1:621265-621284 | None:intergenic | 55.0% |
| !! | GGTGGGTTGATAGCCATGGA+TGG | - | chr4.1:621261-621280 | None:intergenic | 55.0% |
| ATAGCCGCCACATGCAGCAC+AGG | - | chr4.1:622108-622127 | None:intergenic | 60.0% | |
| CCACCCAAGGTCACTCTCAC+TGG | + | chr4.1:621276-621295 | MS.gene94652:CDS | 60.0% | |
| CCAGTGAGAGTGACCTTGGG+TGG | - | chr4.1:621279-621298 | None:intergenic | 60.0% | |
| GGCTGCCTCGGTTGATCCTT+TGG | + | chr4.1:621131-621150 | MS.gene94652:CDS | 60.0% | |
| TCCACCTGTGCTGCATGTGG+CGG | + | chr4.1:622101-622120 | MS.gene94652:intron | 60.0% | |
| !! | TCACTGGGGCTTGGTGCATC+TGG | - | chr4.1:621434-621453 | None:intergenic | 60.0% |
| GCCGCCACATGCAGCACAGG+TGG | - | chr4.1:622105-622124 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 621129 | 623158 | 621129 | ID=MS.gene94652 |
| chr4.1 | mRNA | 621129 | 623158 | 621129 | ID=MS.gene94652.t1;Parent=MS.gene94652 |
| chr4.1 | exon | 621129 | 621323 | 621129 | ID=MS.gene94652.t1.exon1;Parent=MS.gene94652.t1 |
| chr4.1 | CDS | 621129 | 621323 | 621129 | ID=cds.MS.gene94652.t1;Parent=MS.gene94652.t1 |
| chr4.1 | exon | 621419 | 621480 | 621419 | ID=MS.gene94652.t1.exon2;Parent=MS.gene94652.t1 |
| chr4.1 | CDS | 621419 | 621480 | 621419 | ID=cds.MS.gene94652.t1;Parent=MS.gene94652.t1 |
| chr4.1 | exon | 621627 | 621667 | 621627 | ID=MS.gene94652.t1.exon3;Parent=MS.gene94652.t1 |
| chr4.1 | CDS | 621627 | 621667 | 621627 | ID=cds.MS.gene94652.t1;Parent=MS.gene94652.t1 |
| chr4.1 | exon | 622938 | 623158 | 622938 | ID=MS.gene94652.t1.exon4;Parent=MS.gene94652.t1 |
| chr4.1 | CDS | 622938 | 623158 | 622938 | ID=cds.MS.gene94652.t1;Parent=MS.gene94652.t1 |
| Gene Sequence |
| Protein sequence |
