Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95674.t1 | XP_003623359.1 | 97.3 | 258 | 5 | 1 | 1 | 258 | 1 | 256 | 4.30E-137 | 497.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95674.t1 | P19975 | 83.6 | 256 | 37 | 2 | 1 | 256 | 1 | 251 | 1.4e-115 | 417.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95674.t1 | G7KT76 | 97.3 | 258 | 5 | 1 | 1 | 258 | 1 | 256 | 3.1e-137 | 497.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95674 | MS.gene86821 | PPI |
| MS.gene95674 | MS.gene07505 | PPI |
| MS.gene95674 | MS.gene071223 | PPI |
| MS.gene95674 | MS.gene29686 | PPI |
| MS.gene95674 | MS.gene94217 | PPI |
| MS.gene95674 | MS.gene76087 | PPI |
| MS.gene95674 | MS.gene004968 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95674.t1 | MTR_7g069980 | 97.287 | 258 | 5 | 1 | 1 | 258 | 1 | 256 | 0.0 | 513 |
| MS.gene95674.t1 | MTR_4g014540 | 75.494 | 253 | 59 | 1 | 1 | 253 | 1 | 250 | 4.29e-129 | 366 |
| MS.gene95674.t1 | MTR_5g083170 | 75.124 | 201 | 50 | 0 | 57 | 257 | 48 | 248 | 9.56e-107 | 309 |
| MS.gene95674.t1 | MTR_5g083170 | 63.784 | 185 | 53 | 2 | 16 | 200 | 21 | 191 | 6.27e-74 | 224 |
| MS.gene95674.t1 | MTR_5g072560 | 70.161 | 124 | 37 | 0 | 129 | 252 | 18 | 141 | 2.59e-57 | 180 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95674.t1 | AT5G01600 | 75.122 | 205 | 51 | 0 | 49 | 253 | 51 | 255 | 1.62e-114 | 329 |
| MS.gene95674.t1 | AT2G40300 | 65.000 | 240 | 71 | 3 | 23 | 252 | 21 | 257 | 1.13e-104 | 304 |
| MS.gene95674.t1 | AT3G11050 | 66.228 | 228 | 74 | 1 | 28 | 255 | 28 | 252 | 3.39e-103 | 300 |
| MS.gene95674.t1 | AT3G56090 | 73.196 | 194 | 52 | 0 | 59 | 252 | 62 | 255 | 4.25e-100 | 293 |
| MS.gene95674.t1 | AT3G61010 | 68.000 | 50 | 16 | 0 | 100 | 149 | 369 | 418 | 1.74e-15 | 75.9 |
| MS.gene95674.t1 | AT3G61010 | 68.000 | 50 | 16 | 0 | 100 | 149 | 369 | 418 | 1.74e-15 | 75.9 |
Find 52 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAAAGTTTCATCCTTTAA+TGG | 0.172298 | 7.4:+33801933 | MS.gene95674:CDS |
| CCATGTTTGCATACTTTGAT+AGG | 0.193427 | 7.4:+33803104 | MS.gene95674:CDS |
| TATTGTTCCTCAAGTTTCTT+TGG | 0.198180 | 7.4:+33802145 | MS.gene95674:CDS |
| GAATTTGAGCATGTCGAAAA+AGG | 0.241392 | 7.4:+33803623 | MS.gene95674:CDS |
| TATTGCTTCTTTCAGGTGTT+TGG | 0.269468 | 7.4:+33804614 | MS.gene95674:intron |
| AAGAAATGGGGTGGTGGAAC+TGG | 0.309034 | 7.4:+33802032 | MS.gene95674:CDS |
| TGAGAGAGAAAATCCATTAA+AGG | 0.327232 | 7.4:-33801946 | None:intergenic |
| GCAGCAACGGTTCCTTTGAC+TGG | 0.348801 | 7.4:+33802071 | MS.gene95674:CDS |
| TTCTGAGGGCACATTCTTGA+TGG | 0.384093 | 7.4:-33803603 | None:intergenic |
| AAAGAAACTTGAGGAACAAT+AGG | 0.385312 | 7.4:-33802143 | None:intergenic |
| TGAAAAGCTTATGAAATATC+AGG | 0.391882 | 7.4:+33803289 | MS.gene95674:CDS |
| CAGCAACGGTTCCTTTGACT+GGG | 0.392148 | 7.4:+33802072 | MS.gene95674:CDS |
| TATGGAACTAGCTCTGTCTT+TGG | 0.418541 | 7.4:+33803835 | MS.gene95674:CDS |
| TTTGGAAATGGTGTTAAGAA+GGG | 0.438303 | 7.4:+33801975 | MS.gene95674:CDS |
| TCAATGAAGTTTGTCATTTG+AGG | 0.441873 | 7.4:-33804027 | None:intergenic |
| CAATGAAGTTTGTCATTTGA+GGG | 0.442071 | 7.4:-33804026 | None:intergenic |
| TGTTGAAATCAGGTTCTTCA+AGG | 0.448017 | 7.4:+33803238 | MS.gene95674:intron |
| ATGTGAGAGTTGGTAAGAAA+TGG | 0.449029 | 7.4:+33802018 | MS.gene95674:CDS |
| TGGTGGAACTGGAAAGGTTA+CGG | 0.455293 | 7.4:+33802043 | MS.gene95674:CDS |
| GGTTATATTTGAACCGTTTG+AGG | 0.463497 | 7.4:+33802094 | MS.gene95674:CDS |
| TGTGAGAGTTGGTAAGAAAT+GGG | 0.467347 | 7.4:+33802019 | MS.gene95674:CDS |
| CATGTTTGCATACTTTGATA+GGG | 0.500774 | 7.4:+33803105 | MS.gene95674:CDS |
| TCTTTCTTAACCTCCTCAAA+CGG | 0.512013 | 7.4:-33802107 | None:intergenic |
| TCTGAGGGCACATTCTTGAT+GGG | 0.512774 | 7.4:-33803602 | None:intergenic |
| TTCGACATGCTCAAATTCTG+AGG | 0.522929 | 7.4:-33803618 | None:intergenic |
| GTGTCTCAATTGAGAAGGGT+TGG | 0.530310 | 7.4:+33804258 | MS.gene95674:CDS |
| CCTATCAAAGTATGCAAACA+TGG | 0.532849 | 7.4:-33803104 | None:intergenic |
| GAACTTGTTTAGAATGTTCG+TGG | 0.535612 | 7.4:+33803560 | MS.gene95674:intron |
| ATGGGGTGGTGGAACTGGAA+AGG | 0.540294 | 7.4:+33802037 | MS.gene95674:CDS |
| TCATTTGAGGGTCATTGTTG+CGG | 0.541374 | 7.4:-33804014 | None:intergenic |
| AGCAACGGTTCCTTTGACTG+GGG | 0.545713 | 7.4:+33802073 | MS.gene95674:CDS |
| TAGGGACAATGTGGCACTCA+GGG | 0.545838 | 7.4:+33803123 | MS.gene95674:CDS |
| GTTGGTAAGAAATGGGGTGG+TGG | 0.551165 | 7.4:+33802026 | MS.gene95674:CDS |
| TCAATTGAGAAGGGTTGGAA+AGG | 0.551958 | 7.4:+33804263 | MS.gene95674:CDS |
| AGAAGGGTTGGAAAGGGTCA+TGG | 0.553158 | 7.4:+33804270 | MS.gene95674:CDS |
| ATAGGGACAATGTGGCACTC+AGG | 0.553669 | 7.4:+33803122 | MS.gene95674:CDS |
| CAATTGAGAAGGGTTGGAAA+GGG | 0.565267 | 7.4:+33804264 | MS.gene95674:CDS |
| GGTTACGGTTTGTGCAGCAA+CGG | 0.580360 | 7.4:+33802058 | MS.gene95674:CDS |
| TCGACATGCTCAAATTCTGA+GGG | 0.580414 | 7.4:-33803617 | None:intergenic |
| AGTATGTGTCTCAATTGAGA+AGG | 0.580680 | 7.4:+33804253 | MS.gene95674:CDS |
| TCAAATATAACCCCAGTCAA+AGG | 0.586646 | 7.4:-33802083 | None:intergenic |
| CTGAGGGCACATTCTTGATG+GGG | 0.605193 | 7.4:-33803601 | None:intergenic |
| CAAAGTATGCAAACATGGAG+TGG | 0.606862 | 7.4:-33803099 | None:intergenic |
| TATATTTGAACCGTTTGAGG+AGG | 0.613079 | 7.4:+33802097 | MS.gene95674:CDS |
| TGTCTAGCCAAAGAAACTTG+AGG | 0.618586 | 7.4:-33802152 | None:intergenic |
| TGATCAAAGACTTCTTCATG+AGG | 0.628033 | 7.4:+33804642 | MS.gene95674:CDS |
| GTATGTGTCTCAATTGAGAA+GGG | 0.632300 | 7.4:+33804254 | MS.gene95674:CDS |
| AGAGTTGGTAAGAAATGGGG+TGG | 0.643701 | 7.4:+33802023 | MS.gene95674:CDS |
| CTTGTTTAGAATGTTCGTGG+TGG | 0.682636 | 7.4:+33803563 | MS.gene95674:intron |
| GTGAGAGTTGGTAAGAAATG+GGG | 0.684258 | 7.4:+33802020 | MS.gene95674:CDS |
| AGGGACAATGTGGCACTCAG+GGG | 0.690043 | 7.4:+33803124 | MS.gene95674:CDS |
| ATACTTTGATAGGGACAATG+TGG | 0.721777 | 7.4:+33803114 | MS.gene95674:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTTAAAATTTTCAAAA+GGG | + | chr7.4:33802727-33802746 | MS.gene95674:intron | 10.0% |
| !!! | ATATTTTCTTAAATTACTAT+CGG | + | chr7.4:33804482-33804501 | MS.gene95674:intron | 10.0% |
| !!! | TAAAACTTTGTTTAATAAAA+GGG | + | chr7.4:33802508-33802527 | MS.gene95674:intron | 10.0% |
| !!! | TAGTTTTTAAAATTTTCAAA+AGG | + | chr7.4:33802726-33802745 | MS.gene95674:intron | 10.0% |
| !!! | TTTTTTTTTTAAAATTCCAA+AGG | - | chr7.4:33804116-33804135 | None:intergenic | 10.0% |
| !! | AAATATTAGTAGTACTAATT+TGG | - | chr7.4:33802754-33802773 | None:intergenic | 15.0% |
| !! | AATCATAATTATATCTTGAT+TGG | + | chr7.4:33802396-33802415 | MS.gene95674:intron | 15.0% |
| !!! | ATGTGATATTTGAAATTTAT+TGG | + | chr7.4:33802796-33802815 | MS.gene95674:intron | 15.0% |
| !!! | CTAAAACTTTGTTTAATAAA+AGG | + | chr7.4:33802507-33802526 | MS.gene95674:intron | 15.0% |
| !!! | TGTGATATTTGAAATTTATT+GGG | + | chr7.4:33802797-33802816 | MS.gene95674:intron | 15.0% |
| !! | ATTTATATATTGCTTCTTTC+AGG | + | chr7.4:33804607-33804626 | MS.gene95674:intron | 20.0% |
| !! | GTATGAGAAATAAAATAAGA+GGG | - | chr7.4:33803191-33803210 | None:intergenic | 20.0% |
| !! | TGTATGAGAAATAAAATAAG+AGG | - | chr7.4:33803192-33803211 | None:intergenic | 20.0% |
| !! | TTAATGTAAACTACTGAATA+TGG | - | chr7.4:33803771-33803790 | None:intergenic | 20.0% |
| !! | TTTGAAGATTTGTGAAAAAT+AGG | + | chr7.4:33803984-33804003 | MS.gene95674:intron | 20.0% |
| !!! | AAATTCTTTTAGAAAATCAG+AGG | - | chr7.4:33802693-33802712 | None:intergenic | 20.0% |
| !!! | ACTACAATCATTTTTCATAT+TGG | + | chr7.4:33804308-33804327 | MS.gene95674:intron | 20.0% |
| !!! | ATGTTAGGATTCTATATTTT+TGG | + | chr7.4:33804155-33804174 | MS.gene95674:intron | 20.0% |
| !!! | TTCATTGAACATGAATTTTT+GGG | + | chr7.4:33804042-33804061 | MS.gene95674:CDS | 20.0% |
| !!! | TTTCTTTTATTGTTGAAATC+AGG | + | chr7.4:33803228-33803247 | MS.gene95674:intron | 20.0% |
| ! | ATAGCTGAAACAATAAATAG+AGG | - | chr7.4:33803818-33803837 | None:intergenic | 25.0% |
| ! | ATCAATTAGCATAGTAACAA+TGG | - | chr7.4:33803029-33803048 | None:intergenic | 25.0% |
| ! | ATTGATAAGTGTTATGTGTA+TGG | - | chr7.4:33804347-33804366 | None:intergenic | 25.0% |
| ! | GAAACAATAAATAGAGGAAA+AGG | - | chr7.4:33803812-33803831 | None:intergenic | 25.0% |
| ! | TAAGTACTTGTAACAATGTT+TGG | + | chr7.4:33803373-33803392 | MS.gene95674:intron | 25.0% |
| ! | TATTTGATCTGTAGTTGAAA+AGG | + | chr7.4:33803953-33803972 | MS.gene95674:intron | 25.0% |
| ! | TCAATTAGCATAGTAACAAT+GGG | - | chr7.4:33803028-33803047 | None:intergenic | 25.0% |
| ! | TCTATTTATTGTTTCAGCTA+TGG | + | chr7.4:33803817-33803836 | MS.gene95674:intron | 25.0% |
| ! | TGAAAAGCTTATGAAATATC+AGG | + | chr7.4:33803289-33803308 | MS.gene95674:CDS | 25.0% |
| ! | TGTTGATACTCATTTAGATT+TGG | + | chr7.4:33802865-33802884 | MS.gene95674:intron | 25.0% |
| ! | TTAACACCATTTCCAAAAAT+AGG | - | chr7.4:33801972-33801991 | None:intergenic | 25.0% |
| !! | CTCATTTAAATCAAAGTACT+AGG | + | chr7.4:33804078-33804097 | MS.gene95674:intron | 25.0% |
| !! | CTTCATTGAACATGAATTTT+TGG | + | chr7.4:33804041-33804060 | MS.gene95674:CDS | 25.0% |
| !! | TCTAAAGTTTCATCCTTTAA+TGG | + | chr7.4:33801933-33801952 | MS.gene95674:CDS | 25.0% |
| !! | TTTAGCTAAGTTTTACTTTG+AGG | + | chr7.4:33802426-33802445 | MS.gene95674:intron | 25.0% |
| !!! | TTTTTTTCTTTTGCATGCAT+TGG | + | chr7.4:33802997-33803016 | MS.gene95674:intron | 25.0% |
| AAACTGTCATAAAGAGCTTA+TGG | - | chr7.4:33803430-33803449 | None:intergenic | 30.0% | |
| AAAGAAACTTGAGGAACAAT+AGG | - | chr7.4:33802146-33802165 | None:intergenic | 30.0% | |
| AATTTGAGCATGTCGAAAAA+GGG | + | chr7.4:33803624-33803643 | MS.gene95674:CDS | 30.0% | |
| ATCCTCATTCTGTATTCTTT+CGG | + | chr7.4:33802235-33802254 | MS.gene95674:intron | 30.0% | |
| CATGTTTGCATACTTTGATA+GGG | + | chr7.4:33803105-33803124 | MS.gene95674:CDS | 30.0% | |
| GAAATTTATTGGGATCAAGT+TGG | + | chr7.4:33802807-33802826 | MS.gene95674:intron | 30.0% | |
| GAAGATTTGTGAAAAATAGG+TGG | + | chr7.4:33803987-33804006 | MS.gene95674:intron | 30.0% | |
| TAAACAAGTTCATAAGAGCT+AGG | - | chr7.4:33803551-33803570 | None:intergenic | 30.0% | |
| TAGGAATTCATACAAACCTT+TGG | + | chr7.4:33804097-33804116 | MS.gene95674:intron | 30.0% | |
| TATTGTTCCTCAAGTTTCTT+TGG | + | chr7.4:33802145-33802164 | MS.gene95674:CDS | 30.0% | |
| TGAGAGAGAAAATCCATTAA+AGG | - | chr7.4:33801949-33801968 | None:intergenic | 30.0% | |
| ! | AAAGCTGCTTTAACAATGTT+AGG | + | chr7.4:33804140-33804159 | MS.gene95674:intron | 30.0% |
| ! | AAGTTACTTTGAGTCATGTT+TGG | - | chr7.4:33803490-33803509 | None:intergenic | 30.0% |
| ! | AATGATTCTTTGGAAATTGG+AGG | + | chr7.4:33802466-33802485 | MS.gene95674:intron | 30.0% |
| ! | AGCAATGATTCTTTGGAAAT+TGG | + | chr7.4:33802463-33802482 | MS.gene95674:intron | 30.0% |
| ! | CAATGAAGTTTGTCATTTGA+GGG | - | chr7.4:33804029-33804048 | None:intergenic | 30.0% |
| ! | CTATAACTTTTCTAACCATG+TGG | + | chr7.4:33802344-33802363 | MS.gene95674:intron | 30.0% |
| ! | TCAATGAAGTTTGTCATTTG+AGG | - | chr7.4:33804030-33804049 | None:intergenic | 30.0% |
| ! | TTTGGAAATGGTGTTAAGAA+GGG | + | chr7.4:33801975-33801994 | MS.gene95674:CDS | 30.0% |
| ! | TTTTCTCTCTCACCTATTTT+TGG | + | chr7.4:33801957-33801976 | MS.gene95674:CDS | 30.0% |
| !! | ACATATGATTTGCTTTCTTC+AGG | + | chr7.4:33804206-33804225 | MS.gene95674:intron | 30.0% |
| !! | TTTTGGAAATGGTGTTAAGA+AGG | + | chr7.4:33801974-33801993 | MS.gene95674:CDS | 30.0% |
| AACCGAAAGAATACAGAATG+AGG | - | chr7.4:33802240-33802259 | None:intergenic | 35.0% | |
| AGATCCTAGAGCTTTCTTAA+TGG | - | chr7.4:33802927-33802946 | None:intergenic | 35.0% | |
| AGGTCTTTAATTCGAAGTGT+CGG | - | chr7.4:33804389-33804408 | None:intergenic | 35.0% | |
| AGTATGTGTCTCAATTGAGA+AGG | + | chr7.4:33804253-33804272 | MS.gene95674:CDS | 35.0% | |
| ATACTTTGATAGGGACAATG+TGG | + | chr7.4:33803114-33803133 | MS.gene95674:CDS | 35.0% | |
| ATTTGAGCATGTCGAAAAAG+GGG | + | chr7.4:33803625-33803644 | MS.gene95674:CDS | 35.0% | |
| CCATGTTTGCATACTTTGAT+AGG | + | chr7.4:33803104-33803123 | MS.gene95674:CDS | 35.0% | |
| CCTATCAAAGTATGCAAACA+TGG | - | chr7.4:33803107-33803126 | None:intergenic | 35.0% | |
| GAATTTGAGCATGTCGAAAA+AGG | + | chr7.4:33803623-33803642 | MS.gene95674:CDS | 35.0% | |
| GCTTTCTTAATGGTAGATTC+TGG | - | chr7.4:33802917-33802936 | None:intergenic | 35.0% | |
| GGTTATATTTGAACCGTTTG+AGG | + | chr7.4:33802094-33802113 | MS.gene95674:CDS | 35.0% | |
| GTATGTGTCTCAATTGAGAA+GGG | + | chr7.4:33804254-33804273 | MS.gene95674:CDS | 35.0% | |
| TACTCCATGAAACACTTAGA+CGG | - | chr7.4:33804543-33804562 | None:intergenic | 35.0% | |
| TATATTTGAACCGTTTGAGG+AGG | + | chr7.4:33802097-33802116 | MS.gene95674:CDS | 35.0% | |
| TATGTGTATGGCAAAGTTTG+TGG | - | chr7.4:33804335-33804354 | None:intergenic | 35.0% | |
| TCAAATATAACCCCAGTCAA+AGG | - | chr7.4:33802086-33802105 | None:intergenic | 35.0% | |
| TCAGACTAGCAATGATTCTT+TGG | + | chr7.4:33802456-33802475 | MS.gene95674:intron | 35.0% | |
| TCTACCATTAAGAAAGCTCT+AGG | + | chr7.4:33802920-33802939 | MS.gene95674:intron | 35.0% | |
| TCTTTCTTAACCTCCTCAAA+CGG | - | chr7.4:33802110-33802129 | None:intergenic | 35.0% | |
| TGATCAAAGACTTCTTCATG+AGG | + | chr7.4:33804642-33804661 | MS.gene95674:CDS | 35.0% | |
| TGTTGAAATCAGGTTCTTCA+AGG | + | chr7.4:33803238-33803257 | MS.gene95674:intron | 35.0% | |
| ! | AACTTTTCTAACCATGTGGT+TGG | + | chr7.4:33802348-33802367 | MS.gene95674:intron | 35.0% |
| ! | CTTCGTGTTGCAAACTTTTT+AGG | + | chr7.4:33803919-33803938 | MS.gene95674:intron | 35.0% |
| ! | GAACTTGTTTAGAATGTTCG+TGG | + | chr7.4:33803560-33803579 | MS.gene95674:intron | 35.0% |
| ! | TATTGCTTCTTTCAGGTGTT+TGG | + | chr7.4:33804614-33804633 | MS.gene95674:intron | 35.0% |
| ! | TCTTTTTGTGATGTGAGAGT+TGG | + | chr7.4:33802008-33802027 | MS.gene95674:CDS | 35.0% |
| ! | TTTTCATTTGTGTGACAGTG+TGG | + | chr7.4:33803054-33803073 | MS.gene95674:intron | 35.0% |
| !! | ATGTGAGAGTTGGTAAGAAA+TGG | + | chr7.4:33802018-33802037 | MS.gene95674:CDS | 35.0% |
| !! | GGTTAAGTTAGCTTTGTACT+TGG | + | chr7.4:33803310-33803329 | MS.gene95674:intron | 35.0% |
| !! | TGTGAGAGTTGGTAAGAAAT+GGG | + | chr7.4:33802019-33802038 | MS.gene95674:CDS | 35.0% |
| !!! | CTCTCACCTATTTTTGGAAA+TGG | + | chr7.4:33801963-33801982 | MS.gene95674:CDS | 35.0% |
| ACGAAGCTAAATGGACAAAG+AGG | - | chr7.4:33803905-33803924 | None:intergenic | 40.0% | |
| CAAAGTATGCAAACATGGAG+TGG | - | chr7.4:33803102-33803121 | None:intergenic | 40.0% | |
| CAATTGAGAAGGGTTGGAAA+GGG | + | chr7.4:33804264-33804283 | MS.gene95674:CDS | 40.0% | |
| CTCAGTATCTGATCCAAGAA+CGG | - | chr7.4:33802612-33802631 | None:intergenic | 40.0% | |
| CTTCGAATTAAAGACCTGTC+TGG | + | chr7.4:33804392-33804411 | MS.gene95674:intron | 40.0% | |
| GAAAAAGGGGATGCATTACA+TGG | + | chr7.4:33803638-33803657 | MS.gene95674:CDS | 40.0% | |
| GATTTCTTAGTCCAACCACA+TGG | - | chr7.4:33802362-33802381 | None:intergenic | 40.0% | |
| GTATGATACTTCCTCCTATG+TGG | + | chr7.4:33804560-33804579 | MS.gene95674:intron | 40.0% | |
| GTTTGCAACACGAAGCTAAA+TGG | - | chr7.4:33803914-33803933 | None:intergenic | 40.0% | |
| TATCAGACATTGCCATGTGT+TGG | - | chr7.4:33804421-33804440 | None:intergenic | 40.0% | |
| TCAATTGAGAAGGGTTGGAA+AGG | + | chr7.4:33804263-33804282 | MS.gene95674:CDS | 40.0% | |
| TCATTTGAGGGTCATTGTTG+CGG | - | chr7.4:33804017-33804036 | None:intergenic | 40.0% | |
| TCGACATGCTCAAATTCTGA+GGG | - | chr7.4:33803620-33803639 | None:intergenic | 40.0% | |
| TCTTAATGGTAGATTCTGGC+TGG | - | chr7.4:33802913-33802932 | None:intergenic | 40.0% | |
| TGTCTAGCCAAAGAAACTTG+AGG | - | chr7.4:33802155-33802174 | None:intergenic | 40.0% | |
| TTCGACATGCTCAAATTCTG+AGG | - | chr7.4:33803621-33803640 | None:intergenic | 40.0% | |
| ! | ACATCGAAGTATTCGGAAAC+AGG | - | chr7.4:33803702-33803721 | None:intergenic | 40.0% |
| ! | CTATCAGATTAGTCCGTTCT+TGG | + | chr7.4:33802596-33802615 | MS.gene95674:intron | 40.0% |
| ! | CTTGTTTAGAATGTTCGTGG+TGG | + | chr7.4:33803563-33803582 | MS.gene95674:intron | 40.0% |
| ! | GCTGCAAACATCGAAGTATT+CGG | - | chr7.4:33803709-33803728 | None:intergenic | 40.0% |
| !! | ACATGAATTTTTGGGCGAAC+AGG | + | chr7.4:33804050-33804069 | MS.gene95674:CDS | 40.0% |
| !! | CAAGAACGGACTAATCTGAT+AGG | - | chr7.4:33802598-33802617 | None:intergenic | 40.0% |
| !! | GTGAGAGTTGGTAAGAAATG+GGG | + | chr7.4:33802020-33802039 | MS.gene95674:CDS | 40.0% |
| !! | TATGGAACTAGCTCTGTCTT+TGG | + | chr7.4:33803835-33803854 | MS.gene95674:CDS | 40.0% |
| CTGATATTCACATGTGTGCG+TGG | + | chr7.4:33804435-33804454 | MS.gene95674:intron | 45.0% | |
| GGATAGATACACTCCATGCA+AGG | + | chr7.4:33802886-33802905 | MS.gene95674:intron | 45.0% | |
| GTGTCCGTCTAAGTGTTTCA+TGG | + | chr7.4:33804536-33804555 | MS.gene95674:intron | 45.0% | |
| GTGTCTCAATTGAGAAGGGT+TGG | + | chr7.4:33804258-33804277 | MS.gene95674:CDS | 45.0% | |
| TGATACTTCCTCCTATGTGG+TGG | + | chr7.4:33804563-33804582 | MS.gene95674:intron | 45.0% | |
| TGGTGGAACTGGAAAGGTTA+CGG | + | chr7.4:33802043-33802062 | MS.gene95674:CDS | 45.0% | |
| ! | TACATGGTGAGCTTGTTTGC+TGG | + | chr7.4:33803654-33803673 | MS.gene95674:intron | 45.0% |
| ! | TCTGAGGGCACATTCTTGAT+GGG | - | chr7.4:33803605-33803624 | None:intergenic | 45.0% |
| ! | TTCTGAGGGCACATTCTTGA+TGG | - | chr7.4:33803606-33803625 | None:intergenic | 45.0% |
| !! | AGAGTTGGTAAGAAATGGGG+TGG | + | chr7.4:33802023-33802042 | MS.gene95674:CDS | 45.0% |
| !! | AGCTGTGCTCTAGCTTTAAG+CGG | + | chr7.4:33802543-33802562 | MS.gene95674:intron | 45.0% |
| !! | CTTAAGAGTGTCCACCACAT+AGG | - | chr7.4:33804577-33804596 | None:intergenic | 45.0% |
| ACTTAGACGGACACGAACAC+TGG | - | chr7.4:33804530-33804549 | None:intergenic | 50.0% | |
| AGAAGGGTTGGAAAGGGTCA+TGG | + | chr7.4:33804270-33804289 | MS.gene95674:CDS | 50.0% | |
| AGCAACGGTTCCTTTGACTG+GGG | + | chr7.4:33802073-33802092 | MS.gene95674:CDS | 50.0% | |
| AGTTGTGAAGCTGTGCGTTG+TGG | + | chr7.4:33803741-33803760 | MS.gene95674:intron | 50.0% | |
| ATAGGGACAATGTGGCACTC+AGG | + | chr7.4:33803122-33803141 | MS.gene95674:CDS | 50.0% | |
| CAATCACACCACCCATTTGC+GGG | - | chr7.4:33802573-33802592 | None:intergenic | 50.0% | |
| CAGCAACGGTTCCTTTGACT+GGG | + | chr7.4:33802072-33802091 | MS.gene95674:CDS | 50.0% | |
| CCAATCACACCACCCATTTG+CGG | - | chr7.4:33802574-33802593 | None:intergenic | 50.0% | |
| GGTTACGGTTTGTGCAGCAA+CGG | + | chr7.4:33802058-33802077 | MS.gene95674:CDS | 50.0% | |
| TAGGGACAATGTGGCACTCA+GGG | + | chr7.4:33803123-33803142 | MS.gene95674:CDS | 50.0% | |
| ! | CTGAGGGCACATTCTTGATG+GGG | - | chr7.4:33803604-33803623 | None:intergenic | 50.0% |
| ! | GTTGGTAAGAAATGGGGTGG+TGG | + | chr7.4:33802026-33802045 | MS.gene95674:CDS | 50.0% |
| !! | AAGAAATGGGGTGGTGGAAC+TGG | + | chr7.4:33802032-33802051 | MS.gene95674:CDS | 50.0% |
| !! | AAGAGTGTCCACCACATAGG+AGG | - | chr7.4:33804574-33804593 | None:intergenic | 50.0% |
| !! | CTGTGCTCTAGCTTTAAGCG+GGG | + | chr7.4:33802545-33802564 | MS.gene95674:intron | 50.0% |
| !! | GCTGTGCTCTAGCTTTAAGC+GGG | + | chr7.4:33802544-33802563 | MS.gene95674:intron | 50.0% |
| AGGGACAATGTGGCACTCAG+GGG | + | chr7.4:33803124-33803143 | MS.gene95674:CDS | 55.0% | |
| CCATGTGTTGGACACCAGAC+AGG | - | chr7.4:33804409-33804428 | None:intergenic | 55.0% | |
| CCGCAAATGGGTGGTGTGAT+TGG | + | chr7.4:33802571-33802590 | MS.gene95674:intron | 55.0% | |
| CCTGTCTGGTGTCCAACACA+TGG | + | chr7.4:33804406-33804425 | MS.gene95674:intron | 55.0% | |
| GCAGCAACGGTTCCTTTGAC+TGG | + | chr7.4:33802071-33802090 | MS.gene95674:CDS | 55.0% | |
| TAAGCGGGGATCCCGCAAAT+GGG | + | chr7.4:33802559-33802578 | MS.gene95674:intron | 55.0% | |
| TTAAGCGGGGATCCCGCAAA+TGG | + | chr7.4:33802558-33802577 | MS.gene95674:intron | 55.0% | |
| ! | GATTCTGGCTGGACCTTGCA+TGG | - | chr7.4:33802902-33802921 | None:intergenic | 55.0% |
| !! | ATGGGGTGGTGGAACTGGAA+AGG | + | chr7.4:33802037-33802056 | MS.gene95674:CDS | 55.0% |
| GCGGGGATCCCGCAAATGGG+TGG | + | chr7.4:33802562-33802581 | MS.gene95674:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 33801918 | 33804678 | 33801918 | ID=MS.gene95674 |
| chr7.4 | mRNA | 33801918 | 33804678 | 33801918 | ID=MS.gene95674.t1;Parent=MS.gene95674 |
| chr7.4 | exon | 33801918 | 33802219 | 33801918 | ID=MS.gene95674.t1.exon1;Parent=MS.gene95674.t1 |
| chr7.4 | CDS | 33801918 | 33802219 | 33801918 | ID=cds.MS.gene95674.t1;Parent=MS.gene95674.t1 |
| chr7.4 | exon | 33803072 | 33803155 | 33803072 | ID=MS.gene95674.t1.exon2;Parent=MS.gene95674.t1 |
| chr7.4 | CDS | 33803072 | 33803155 | 33803072 | ID=cds.MS.gene95674.t1;Parent=MS.gene95674.t1 |
| chr7.4 | exon | 33803250 | 33803310 | 33803250 | ID=MS.gene95674.t1.exon3;Parent=MS.gene95674.t1 |
| chr7.4 | CDS | 33803250 | 33803310 | 33803250 | ID=cds.MS.gene95674.t1;Parent=MS.gene95674.t1 |
| chr7.4 | exon | 33803572 | 33803659 | 33803572 | ID=MS.gene95674.t1.exon4;Parent=MS.gene95674.t1 |
| chr7.4 | CDS | 33803572 | 33803659 | 33803572 | ID=cds.MS.gene95674.t1;Parent=MS.gene95674.t1 |
| chr7.4 | exon | 33803834 | 33803895 | 33803834 | ID=MS.gene95674.t1.exon5;Parent=MS.gene95674.t1 |
| chr7.4 | CDS | 33803834 | 33803895 | 33803834 | ID=cds.MS.gene95674.t1;Parent=MS.gene95674.t1 |
| chr7.4 | exon | 33804006 | 33804071 | 33804006 | ID=MS.gene95674.t1.exon6;Parent=MS.gene95674.t1 |
| chr7.4 | CDS | 33804006 | 33804071 | 33804006 | ID=cds.MS.gene95674.t1;Parent=MS.gene95674.t1 |
| chr7.4 | exon | 33804228 | 33804291 | 33804228 | ID=MS.gene95674.t1.exon7;Parent=MS.gene95674.t1 |
| chr7.4 | CDS | 33804228 | 33804291 | 33804228 | ID=cds.MS.gene95674.t1;Parent=MS.gene95674.t1 |
| chr7.4 | exon | 33804629 | 33804678 | 33804629 | ID=MS.gene95674.t1.exon8;Parent=MS.gene95674.t1 |
| chr7.4 | CDS | 33804629 | 33804678 | 33804629 | ID=cds.MS.gene95674.t1;Parent=MS.gene95674.t1 |
| Gene Sequence |
| Protein sequence |
