Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95766.t1 | XP_013455580.1 | 97.8 | 92 | 2 | 0 | 1 | 92 | 1 | 92 | 2.20E-43 | 184.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95766.t1 | G7ZX33 | 97.8 | 92 | 2 | 0 | 1 | 92 | 1 | 92 | 1.6e-43 | 184.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049419 | MS.gene95766 | 0.825821 | 3.80E-54 | -1.69E-46 |
| MS.gene049958 | MS.gene95766 | -0.805948 | 1.04E-49 | -1.69E-46 |
| MS.gene052674 | MS.gene95766 | -0.810954 | 8.91E-51 | -1.69E-46 |
| MS.gene052675 | MS.gene95766 | -0.804071 | 2.58E-49 | -1.69E-46 |
| MS.gene052677 | MS.gene95766 | -0.806343 | 8.61E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene95766 | -0.835687 | 1.45E-56 | -1.69E-46 |
| MS.gene058081 | MS.gene95766 | -0.824934 | 6.17E-54 | -1.69E-46 |
| MS.gene060850 | MS.gene95766 | -0.827251 | 1.73E-54 | -1.69E-46 |
| MS.gene060851 | MS.gene95766 | -0.827912 | 1.20E-54 | -1.69E-46 |
| MS.gene060852 | MS.gene95766 | -0.827247 | 1.74E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95766.t1 | MTR_4g046033 | 97.826 | 92 | 2 | 0 | 1 | 92 | 1 | 92 | 1.99e-62 | 184 |
| MS.gene95766.t1 | MTR_2g080270 | 56.667 | 90 | 36 | 1 | 3 | 92 | 6 | 92 | 4.83e-34 | 112 |
| MS.gene95766.t1 | MTR_2g080270 | 47.458 | 59 | 28 | 1 | 3 | 61 | 6 | 61 | 2.42e-15 | 64.7 |
| MS.gene95766.t1 | MTR_2g080270 | 47.368 | 57 | 27 | 1 | 3 | 59 | 6 | 59 | 2.18e-14 | 62.4 |
| MS.gene95766.t1 | MTR_2g080270 | 47.368 | 57 | 27 | 1 | 3 | 59 | 6 | 59 | 4.76e-14 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95766.t1 | AT2G20820 | 58.140 | 86 | 35 | 1 | 1 | 85 | 1 | 86 | 4.71e-29 | 100 |
| MS.gene95766.t1 | AT2G20820 | 50.000 | 62 | 30 | 1 | 1 | 61 | 1 | 62 | 9.86e-13 | 58.9 |
Find 32 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGTGATTGTCTCTTTAAC+TGG | 0.238620 | 4.1:+53793484 | MS.gene95766:CDS |
| ACCCAATGAGTCCTTCTAAA+TGG | 0.292979 | 4.1:+53793315 | MS.gene95766:CDS |
| GGCTGGGGACTAACATTCTA+TGG | 0.313459 | 4.1:+53793505 | MS.gene95766:CDS |
| TGCTCTTCCTTCCATTTAGA+AGG | 0.313496 | 4.1:-53793326 | None:intergenic |
| TGATTGTCTCTTTAACTGGC+TGG | 0.342484 | 4.1:+53793488 | MS.gene95766:CDS |
| TTCCATTTAGAAGGACTCAT+TGG | 0.371713 | 4.1:-53793317 | None:intergenic |
| GATGAGTTGAATGGGAGATT+TGG | 0.382911 | 4.1:-53792449 | None:intergenic |
| CGTGGCCTCTCCGCAGCTGC+AGG | 0.383883 | 4.1:+53792478 | MS.gene95766:CDS |
| CTGCGGAGAGGCCACGGCGG+TGG | 0.416853 | 4.1:-53792471 | None:intergenic |
| CTGCAGCTGCGGAGAGGCCA+CGG | 0.454721 | 4.1:-53792477 | None:intergenic |
| ACGGCGGTGGATGAGTTGAA+TGG | 0.461675 | 4.1:-53792458 | None:intergenic |
| TCCATTTAGAAGGACTCATT+GGG | 0.472687 | 4.1:-53793316 | None:intergenic |
| CGGCGGTGGATGAGTTGAAT+GGG | 0.484723 | 4.1:-53792457 | None:intergenic |
| GATTGTCTCTTTAACTGGCT+GGG | 0.485266 | 4.1:+53793489 | MS.gene95766:CDS |
| TTGAATGGGAGATTTGGAAG+AGG | 0.488798 | 4.1:-53792443 | None:intergenic |
| ACTCATTGGGTCTTTCCAGC+AGG | 0.521627 | 4.1:-53793303 | None:intergenic |
| ATTGTCTCTTTAACTGGCTG+GGG | 0.524474 | 4.1:+53793490 | MS.gene95766:CDS |
| TTTCCAGCAGGCAACTTTAG+CGG | 0.538012 | 4.1:-53793291 | None:intergenic |
| GCTGGGGACTAACATTCTAT+GGG | 0.545264 | 4.1:+53793506 | MS.gene95766:CDS |
| GTTCCGCTAAAGTTGCCTGC+TGG | 0.548596 | 4.1:+53793288 | MS.gene95766:CDS |
| AATGAGTCCTTCTAAATGGA+AGG | 0.562278 | 4.1:+53793319 | MS.gene95766:CDS |
| TTCAGGAGGCAAGAAAGAAG+AGG | 0.592752 | 4.1:+53793543 | MS.gene95766:CDS |
| TGCGGCTCCACGTACGAGAG+AGG | 0.612256 | 4.1:-53792398 | None:intergenic |
| TTGGTGGAAGCGTCAGCTTG+AGG | 0.641134 | 4.1:+53794583 | MS.gene95766:CDS |
| AGGCAACTTTAGCGGAACCA+TGG | 0.643716 | 4.1:-53793283 | None:intergenic |
| ATTCAACTCATCCACCGCCG+TGG | 0.648831 | 4.1:+53792460 | MS.gene95766:CDS |
| TTGATTATTGCAGATCACCA+TGG | 0.656234 | 4.1:+53793266 | MS.gene95766:intron |
| AAGAACCTGCAGCTGCGGAG+AGG | 0.667295 | 4.1:-53792483 | None:intergenic |
| CTGGGGACTAACATTCTATG+GGG | 0.689871 | 4.1:+53793507 | MS.gene95766:CDS |
| CAGCTGCGGAGAGGCCACGG+CGG | 0.706800 | 4.1:-53792474 | None:intergenic |
| TGGGGACTAACATTCTATGG+GGG | 0.723176 | 4.1:+53793508 | MS.gene95766:CDS |
| AGTGATGCGAGTTAGAGATG+CGG | 0.731219 | 4.1:-53792416 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATAAAATGTATTATTGAT+TGG | + | chr4.1:53793891-53793910 | MS.gene95766:intron | 15.0% |
| !!! | TTAAATCTTGTTTACATATT+TGG | + | chr4.1:53793065-53793084 | MS.gene95766:intron | 15.0% |
| !! | TGATTAAGTAAATAGAGAAA+TGG | - | chr4.1:53792513-53792532 | None:intergenic | 20.0% |
| !! | TTTATGTTTCTCTTTCATTT+GGG | - | chr4.1:53793878-53793897 | None:intergenic | 20.0% |
| !!! | AAATCTCTGATTTTATGTAT+TGG | + | chr4.1:53793843-53793862 | MS.gene95766:intron | 20.0% |
| !!! | ATATGATTATTTGAGCTTTT+AGG | + | chr4.1:53794219-53794238 | MS.gene95766:intron | 20.0% |
| !!! | ATTAATGGACTAATGATATA+AGG | + | chr4.1:53793126-53793145 | MS.gene95766:intron | 20.0% |
| !!! | ATTTTTTACATTGAGATGAT+TGG | + | chr4.1:53793408-53793427 | MS.gene95766:intron | 20.0% |
| !!! | CAATTTTGATATATGTGAAA+TGG | + | chr4.1:53793234-53793253 | MS.gene95766:intron | 20.0% |
| !!! | TGATTTTATGTATTGGATAT+AGG | + | chr4.1:53793850-53793869 | MS.gene95766:intron | 20.0% |
| !!! | TTGTAGACTAAAACTTTTAT+TGG | - | chr4.1:53794411-53794430 | None:intergenic | 20.0% |
| !!! | TTTTAGGAAAAATGTTAGAT+GGG | + | chr4.1:53794235-53794254 | MS.gene95766:intron | 20.0% |
| !!! | TTTTATGTTTCTCTTTCATT+TGG | - | chr4.1:53793879-53793898 | None:intergenic | 20.0% |
| !!! | TTTTCTTCTGTAATAAATCT+AGG | - | chr4.1:53793920-53793939 | None:intergenic | 20.0% |
| ! | AGAACAGTAATGTTTAAATC+AGG | + | chr4.1:53794438-53794457 | MS.gene95766:intron | 25.0% |
| !! | ATATTGGCTATTAATTCACA+AGG | + | chr4.1:53792717-53792736 | MS.gene95766:intron | 25.0% |
| !! | ATTTTCAATTCCAACCTTTT+AGG | - | chr4.1:53794003-53794022 | None:intergenic | 25.0% |
| !! | TATTGGCTATTAATTCACAA+GGG | + | chr4.1:53792718-53792737 | MS.gene95766:intron | 25.0% |
| !! | TTTGAACAAACAATTGACTT+TGG | + | chr4.1:53793093-53793112 | MS.gene95766:intron | 25.0% |
| !!! | ATATTCTTTTGAGTTTTGTC+TGG | + | chr4.1:53793444-53793463 | MS.gene95766:intron | 25.0% |
| !!! | CTTTTAGGAAAAATGTTAGA+TGG | + | chr4.1:53794234-53794253 | MS.gene95766:intron | 25.0% |
| !!! | TTAAAGCTGCAATTTAGTTT+TGG | + | chr4.1:53792688-53792707 | MS.gene95766:intron | 25.0% |
| !!! | TTAGTTTTGGTTTGAGATAT+TGG | + | chr4.1:53792701-53792720 | MS.gene95766:intron | 25.0% |
| !!! | TTGTAAGATTTTGATGAGAT+CGG | - | chr4.1:53792541-53792560 | None:intergenic | 25.0% |
| !!! | TTTGGTTTTGGATAGATTAA+TGG | + | chr4.1:53793111-53793130 | MS.gene95766:intron | 25.0% |
| AACTCAGCTATAAACAAACA+CGG | - | chr4.1:53793653-53793672 | None:intergenic | 30.0% | |
| ATATCGTATTTATTAGCTCG+TGG | + | chr4.1:53793602-53793621 | MS.gene95766:intron | 30.0% | |
| ATCGACATATTGTATGTACA+TGG | - | chr4.1:53793764-53793783 | None:intergenic | 30.0% | |
| ATGTTTAAATCAGGACTTGT+TGG | + | chr4.1:53794447-53794466 | MS.gene95766:intron | 30.0% | |
| ATTAATTCACAAGGGACTTT+GGG | + | chr4.1:53792726-53792745 | MS.gene95766:intron | 30.0% | |
| CAATATGTCGATAATTGTCT+TGG | + | chr4.1:53793772-53793791 | MS.gene95766:intron | 30.0% | |
| CCTTATGAATGGTAAAAATG+TGG | + | chr4.1:53792925-53792944 | MS.gene95766:intron | 30.0% | |
| CTTTAGCAAAGTCTTAGATT+CGG | + | chr4.1:53792897-53792916 | MS.gene95766:intron | 30.0% | |
| GAAAATTCTTCACACACATA+TGG | + | chr4.1:53793794-53793813 | MS.gene95766:intron | 30.0% | |
| GGATTTGGATTTGAATTACT+TGG | - | chr4.1:53792585-53792604 | None:intergenic | 30.0% | |
| GGTAAAAATGTGGTTTAATG+TGG | + | chr4.1:53792935-53792954 | MS.gene95766:intron | 30.0% | |
| TATAAGGACGAATAGATGTT+TGG | + | chr4.1:53793142-53793161 | MS.gene95766:intron | 30.0% | |
| TATTAATTCACAAGGGACTT+TGG | + | chr4.1:53792725-53792744 | MS.gene95766:intron | 30.0% | |
| TTAAAGAGACAATCACAAAC+TGG | - | chr4.1:53793483-53793502 | None:intergenic | 30.0% | |
| TTAGAGGAAAACTGTTTATG+TGG | - | chr4.1:53794088-53794107 | None:intergenic | 30.0% | |
| TTTGTGATTGTCTCTTTAAC+TGG | + | chr4.1:53793484-53793503 | MS.gene95766:CDS | 30.0% | |
| ! | CACTGAATTTTTGCAGAAAT+TGG | + | chr4.1:53794564-53794583 | MS.gene95766:intron | 30.0% |
| ! | CCACATTTTTACCATTCATA+AGG | - | chr4.1:53792928-53792947 | None:intergenic | 30.0% |
| ! | GAATCTAAGACTTTGCTAAA+GGG | - | chr4.1:53792898-53792917 | None:intergenic | 30.0% |
| ! | TGAATTTTTGCAGAAATTGG+TGG | + | chr4.1:53794567-53794586 | MS.gene95766:intron | 30.0% |
| !! | ATCCTTGCACTATTTTAGAA+CGG | - | chr4.1:53793728-53793747 | None:intergenic | 30.0% |
| !! | CAAACAATTGACTTTGGTTT+TGG | + | chr4.1:53793099-53793118 | MS.gene95766:intron | 30.0% |
| !!! | CACTATTTTAGAACGGTAAA+TGG | - | chr4.1:53793721-53793740 | None:intergenic | 30.0% |
| !!! | TATTTTAGAACGGTAAATGG+AGG | - | chr4.1:53793718-53793737 | None:intergenic | 30.0% |
| AAATAGCTCTCGGGTTATTT+GGG | - | chr4.1:53793945-53793964 | None:intergenic | 35.0% | |
| AATACAGAACAGAGGGAAAA+TGG | - | chr4.1:53794046-53794065 | None:intergenic | 35.0% | |
| AATGAGTCCTTCTAAATGGA+AGG | + | chr4.1:53793319-53793338 | MS.gene95766:CDS | 35.0% | |
| AGCTTATTCCAATTCAGACA+TGG | - | chr4.1:53792606-53792625 | None:intergenic | 35.0% | |
| ATCCAAATCCATGTCTGAAT+TGG | + | chr4.1:53792595-53792614 | MS.gene95766:intron | 35.0% | |
| CAATACTCCAATGAATCAGT+AGG | + | chr4.1:53794269-53794288 | MS.gene95766:intron | 35.0% | |
| CTGTCTTTGTTCAACCTAAA+AGG | + | chr4.1:53793986-53794005 | MS.gene95766:intron | 35.0% | |
| CTTTGTTCAACCTAAAAGGT+TGG | + | chr4.1:53793990-53794009 | MS.gene95766:intron | 35.0% | |
| GAAAACTGTTTATGTGGTAG+TGG | - | chr4.1:53794082-53794101 | None:intergenic | 35.0% | |
| GGATGCATCAACTTATGATA+TGG | + | chr4.1:53793020-53793039 | MS.gene95766:intron | 35.0% | |
| GTTAAGGAGAGCTTAATGTT+CGG | + | chr4.1:53792753-53792772 | MS.gene95766:intron | 35.0% | |
| TAATGTGGAGACCTTACTAA+CGG | + | chr4.1:53792950-53792969 | MS.gene95766:intron | 35.0% | |
| TCCATTTAGAAGGACTCATT+GGG | - | chr4.1:53793319-53793338 | None:intergenic | 35.0% | |
| TGGTTAGATAGATTCGTTAG+CGG | + | chr4.1:53792973-53792992 | MS.gene95766:intron | 35.0% | |
| TTAAGGAGAGCTTAATGTTC+GGG | + | chr4.1:53792754-53792773 | MS.gene95766:intron | 35.0% | |
| TTCCAATTCAGACATGGATT+TGG | - | chr4.1:53792600-53792619 | None:intergenic | 35.0% | |
| TTCCATTTAGAAGGACTCAT+TGG | - | chr4.1:53793320-53793339 | None:intergenic | 35.0% | |
| TTGATTATTGCAGATCACCA+TGG | + | chr4.1:53793266-53793285 | MS.gene95766:intron | 35.0% | |
| ! | CGAATCTAAGACTTTGCTAA+AGG | - | chr4.1:53792899-53792918 | None:intergenic | 35.0% |
| ! | TTTTCCCTCTGTTCTGTATT+CGG | + | chr4.1:53794046-53794065 | MS.gene95766:intron | 35.0% |
| !! | GGATACAAGTTATTTTCAGG+AGG | + | chr4.1:53793529-53793548 | MS.gene95766:CDS | 35.0% |
| !! | TACCGTTCTAAAATAGTGCA+AGG | + | chr4.1:53793723-53793742 | MS.gene95766:intron | 35.0% |
| !! | TTCCATTCCTACTGATTCAT+TGG | - | chr4.1:53794279-53794298 | None:intergenic | 35.0% |
| AAACATTACGACTGACTGAG+TGG | + | chr4.1:53792858-53792877 | MS.gene95766:intron | 40.0% | |
| AAGAGACAATCACAAACTGG+AGG | - | chr4.1:53793480-53793499 | None:intergenic | 40.0% | |
| ACAAAACAAGCCATCTAACC+AGG | - | chr4.1:53794474-53794493 | None:intergenic | 40.0% | |
| ACCCAATGAGTCCTTCTAAA+TGG | + | chr4.1:53793315-53793334 | MS.gene95766:CDS | 40.0% | |
| AGAACAGAGGGAAAATGGAA+AGG | - | chr4.1:53794041-53794060 | None:intergenic | 40.0% | |
| ATTGTCTCTTTAACTGGCTG+GGG | + | chr4.1:53793490-53793509 | MS.gene95766:CDS | 40.0% | |
| CTATCTAACCACCGTTAGTA+AGG | - | chr4.1:53792964-53792983 | None:intergenic | 40.0% | |
| CTCCAATGAATCAGTAGGAA+TGG | + | chr4.1:53794274-53794293 | MS.gene95766:intron | 40.0% | |
| GAAATAGCTCTCGGGTTATT+TGG | - | chr4.1:53793946-53793965 | None:intergenic | 40.0% | |
| GAATAAGAGATTATCTCCCG+TGG | + | chr4.1:53792792-53792811 | MS.gene95766:intron | 40.0% | |
| GATTGTCTCTTTAACTGGCT+GGG | + | chr4.1:53793489-53793508 | MS.gene95766:CDS | 40.0% | |
| TCCCTACTCAACCTCTTTAT+CGG | + | chr4.1:53794110-53794129 | MS.gene95766:intron | 40.0% | |
| TGATTGTCTCTTTAACTGGC+TGG | + | chr4.1:53793488-53793507 | MS.gene95766:CDS | 40.0% | |
| TGCTCTTCCTTCCATTTAGA+AGG | - | chr4.1:53793329-53793348 | None:intergenic | 40.0% | |
| TTGAATGGGAGATTTGGAAG+AGG | - | chr4.1:53792446-53792465 | None:intergenic | 40.0% | |
| ! | ACAGCATTATCTTTTCTCCG+AGG | - | chr4.1:53793970-53793989 | None:intergenic | 40.0% |
| ! | AGATTAGTTATCGCACCAGT+CGG | + | chr4.1:53792996-53793015 | MS.gene95766:intron | 40.0% |
| ! | GATGAGTTGAATGGGAGATT+TGG | - | chr4.1:53792452-53792471 | None:intergenic | 40.0% |
| !! | AACTGTTTATGTGGTAGTGG+AGG | - | chr4.1:53794079-53794098 | None:intergenic | 40.0% |
| !! | GGGGGATACAAGTTATTTTC+AGG | + | chr4.1:53793526-53793545 | MS.gene95766:CDS | 40.0% |
| AATTCACAAGGGACTTTGGG+TGG | + | chr4.1:53792729-53792748 | MS.gene95766:intron | 45.0% | |
| ACCTGTTAGGATACCTGGTT+TGG | - | chr4.1:53794144-53794163 | None:intergenic | 45.0% | |
| AGGTTGAGTAGGGAAGTTAG+AGG | - | chr4.1:53794104-53794123 | None:intergenic | 45.0% | |
| AGTGATGCGAGTTAGAGATG+CGG | - | chr4.1:53792419-53792438 | None:intergenic | 45.0% | |
| CCCGATAAAGAGGTTGAGTA+GGG | - | chr4.1:53794114-53794133 | None:intergenic | 45.0% | |
| CCCTACTCAACCTCTTTATC+GGG | + | chr4.1:53794111-53794130 | MS.gene95766:intron | 45.0% | |
| CCGAGTCTTCTCTTTACTCA+CGG | + | chr4.1:53794537-53794556 | MS.gene95766:intron | 45.0% | |
| CCGTGAGTAAAGAGAAGACT+CGG | - | chr4.1:53794540-53794559 | None:intergenic | 45.0% | |
| CCTGTTAGGATACCTGGTTT+GGG | - | chr4.1:53794143-53794162 | None:intergenic | 45.0% | |
| CTGGGGACTAACATTCTATG+GGG | + | chr4.1:53793507-53793526 | MS.gene95766:CDS | 45.0% | |
| CTTCCCATACGTTACATCCA+CGG | - | chr4.1:53792812-53792831 | None:intergenic | 45.0% | |
| GAAAAAAGAACCTGCAGCTG+CGG | - | chr4.1:53792491-53792510 | None:intergenic | 45.0% | |
| GCAACCGAATACAGAACAGA+GGG | - | chr4.1:53794053-53794072 | None:intergenic | 45.0% | |
| GCTGGGGACTAACATTCTAT+GGG | + | chr4.1:53793506-53793525 | MS.gene95766:CDS | 45.0% | |
| TCAACCTCTTTATCGGGCTT+AGG | + | chr4.1:53794117-53794136 | MS.gene95766:intron | 45.0% | |
| TGGGGACTAACATTCTATGG+GGG | + | chr4.1:53793508-53793527 | MS.gene95766:CDS | 45.0% | |
| TTCAGGAGGCAAGAAAGAAG+AGG | + | chr4.1:53793543-53793562 | MS.gene95766:CDS | 45.0% | |
| TTCCCATACGTTACATCCAC+GGG | - | chr4.1:53792811-53792830 | None:intergenic | 45.0% | |
| TTTCCAGCAGGCAACTTTAG+CGG | - | chr4.1:53793294-53793313 | None:intergenic | 45.0% | |
| ! | ACTTGTTGGTCCTGGTTAGA+TGG | + | chr4.1:53794461-53794480 | MS.gene95766:intron | 45.0% |
| ! | ATTCGGTCGAGCCTTATGAA+TGG | + | chr4.1:53792914-53792933 | MS.gene95766:intron | 45.0% |
| !! | AAATCAGGACTTGTTGGTCC+TGG | + | chr4.1:53794453-53794472 | MS.gene95766:intron | 45.0% |
| !! | GTTTATGTGGTAGTGGAGGT+TGG | - | chr4.1:53794075-53794094 | None:intergenic | 45.0% |
| ACTCATTGGGTCTTTCCAGC+AGG | - | chr4.1:53793306-53793325 | None:intergenic | 50.0% | |
| AGGCAACTTTAGCGGAACCA+TGG | - | chr4.1:53793286-53793305 | None:intergenic | 50.0% | |
| AGGGACTTTGGGTGGAGTTA+AGG | + | chr4.1:53792737-53792756 | MS.gene95766:intron | 50.0% | |
| CAGGAACCTGTTAGGATACC+TGG | - | chr4.1:53794149-53794168 | None:intergenic | 50.0% | |
| CCCAAACCAGGTATCCTAAC+AGG | + | chr4.1:53794140-53794159 | MS.gene95766:intron | 50.0% | |
| CTCCCGTGGATGTAACGTAT+GGG | + | chr4.1:53792806-53792825 | MS.gene95766:intron | 50.0% | |
| CTCCGAGGAGAAATAGCTCT+CGG | - | chr4.1:53793955-53793974 | None:intergenic | 50.0% | |
| GAGCTTAATGTTCGGGTGTC+TGG | + | chr4.1:53792761-53792780 | MS.gene95766:intron | 50.0% | |
| GCCCGATAAAGAGGTTGAGT+AGG | - | chr4.1:53794115-53794134 | None:intergenic | 50.0% | |
| GGCAACCGAATACAGAACAG+AGG | - | chr4.1:53794054-53794073 | None:intergenic | 50.0% | |
| GGCTGGGGACTAACATTCTA+TGG | + | chr4.1:53793505-53793524 | MS.gene95766:CDS | 50.0% | |
| TCCGAGGAGAAATAGCTCTC+GGG | - | chr4.1:53793954-53793973 | None:intergenic | 50.0% | |
| TCTCCCGTGGATGTAACGTA+TGG | + | chr4.1:53792805-53792824 | MS.gene95766:intron | 50.0% | |
| TGTAGTTGCTTCAGAGCAGC+AGG | - | chr4.1:53794168-53794187 | None:intergenic | 50.0% | |
| TGTGGAGACCTTACTAACGG+TGG | + | chr4.1:53792953-53792972 | MS.gene95766:intron | 50.0% | |
| TTAGTTATCGCACCAGTCGG+TGG | + | chr4.1:53792999-53793018 | MS.gene95766:intron | 50.0% | |
| !! | AAGTTGATGCATCCACCGAC+TGG | - | chr4.1:53793014-53793033 | None:intergenic | 50.0% |
| !! | ACCCGAGAGCTATTTCTCCT+CGG | + | chr4.1:53793950-53793969 | MS.gene95766:intron | 50.0% |
| ATTCAACTCATCCACCGCCG+TGG | + | chr4.1:53792460-53792479 | MS.gene95766:CDS | 55.0% | |
| CAGAGCAGCAGGAACCTGTT+AGG | - | chr4.1:53794157-53794176 | None:intergenic | 55.0% | |
| GTTCCGCTAAAGTTGCCTGC+TGG | + | chr4.1:53793288-53793307 | MS.gene95766:CDS | 55.0% | |
| TGGGCCTAAGCCCGATAAAG+AGG | - | chr4.1:53794124-53794143 | None:intergenic | 55.0% | |
| ! | ACGGCGGTGGATGAGTTGAA+TGG | - | chr4.1:53792461-53792480 | None:intergenic | 55.0% |
| ! | CGGCGGTGGATGAGTTGAAT+GGG | - | chr4.1:53792460-53792479 | None:intergenic | 55.0% |
| AAGAACCTGCAGCTGCGGAG+AGG | - | chr4.1:53792486-53792505 | None:intergenic | 60.0% | |
| ATCGGGCTTAGGCCCAAACC+AGG | + | chr4.1:53794128-53794147 | MS.gene95766:intron | 60.0% | |
| TGCGGCTCCACGTACGAGAG+AGG | - | chr4.1:53792401-53792420 | None:intergenic | 65.0% | |
| CTGCAGCTGCGGAGAGGCCA+CGG | - | chr4.1:53792480-53792499 | None:intergenic | 70.0% | |
| CAGCTGCGGAGAGGCCACGG+CGG | - | chr4.1:53792477-53792496 | None:intergenic | 75.0% | |
| CGTGGCCTCTCCGCAGCTGC+AGG | + | chr4.1:53792478-53792497 | MS.gene95766:CDS | 75.0% | |
| ! | CTGCGGAGAGGCCACGGCGG+TGG | - | chr4.1:53792474-53792493 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 53792394 | 53794603 | 53792394 | ID=MS.gene95766 |
| chr4.1 | mRNA | 53792394 | 53794603 | 53792394 | ID=MS.gene95766.t1;Parent=MS.gene95766 |
| chr4.1 | exon | 53792394 | 53792499 | 53792394 | ID=MS.gene95766.t1.exon1;Parent=MS.gene95766.t1 |
| chr4.1 | CDS | 53792394 | 53792499 | 53792394 | ID=cds.MS.gene95766.t1;Parent=MS.gene95766.t1 |
| chr4.1 | exon | 53793279 | 53793349 | 53793279 | ID=MS.gene95766.t1.exon2;Parent=MS.gene95766.t1 |
| chr4.1 | CDS | 53793279 | 53793349 | 53793279 | ID=cds.MS.gene95766.t1;Parent=MS.gene95766.t1 |
| chr4.1 | exon | 53793484 | 53793564 | 53793484 | ID=MS.gene95766.t1.exon3;Parent=MS.gene95766.t1 |
| chr4.1 | CDS | 53793484 | 53793564 | 53793484 | ID=cds.MS.gene95766.t1;Parent=MS.gene95766.t1 |
| chr4.1 | exon | 53794580 | 53794603 | 53794580 | ID=MS.gene95766.t1.exon4;Parent=MS.gene95766.t1 |
| chr4.1 | CDS | 53794580 | 53794603 | 53794580 | ID=cds.MS.gene95766.t1;Parent=MS.gene95766.t1 |
| Gene Sequence |
| Protein sequence |
