Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95893.t1 | XP_003631075.2 | 99.4 | 173 | 1 | 0 | 1 | 173 | 1 | 173 | 1.40E-94 | 355.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95893.t1 | Q9XFK7 | 76.9 | 173 | 39 | 1 | 2 | 173 | 1 | 173 | 1.4e-76 | 287.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95893.t1 | G7LDA2 | 99.4 | 173 | 1 | 0 | 1 | 173 | 1 | 173 | 9.9e-95 | 355.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene042580 | MS.gene95893 | PPI |
| MS.gene95893 | MS.gene51950 | PPI |
| MS.gene95893 | MS.gene98252 | PPI |
| MS.gene51913 | MS.gene95893 | PPI |
| MS.gene43049 | MS.gene95893 | PPI |
| MS.gene000759 | MS.gene95893 | PPI |
| MS.gene95893 | MS.gene35397 | PPI |
| MS.gene95893 | MS.gene034467 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95893.t1 | MTR_8g106840 | 99.422 | 173 | 1 | 0 | 1 | 173 | 1 | 173 | 1.71e-126 | 352 |
| MS.gene95893.t1 | MTR_0020s0120 | 54.335 | 173 | 77 | 2 | 2 | 173 | 1 | 172 | 2.42e-64 | 195 |
| MS.gene95893.t1 | MTR_7g104460 | 53.448 | 174 | 80 | 1 | 1 | 173 | 1 | 174 | 7.43e-62 | 189 |
| MS.gene95893.t1 | MTR_0020s0120 | 53.179 | 173 | 72 | 3 | 2 | 173 | 1 | 165 | 4.30e-61 | 187 |
| MS.gene95893.t1 | MTR_2g086270 | 49.133 | 173 | 87 | 1 | 2 | 173 | 1 | 173 | 5.80e-57 | 176 |
| MS.gene95893.t1 | MTR_7g084970 | 50.000 | 174 | 85 | 2 | 1 | 173 | 1 | 173 | 5.18e-56 | 174 |
| MS.gene95893.t1 | MTR_6g033040 | 51.190 | 168 | 80 | 2 | 1 | 167 | 1 | 167 | 5.49e-55 | 172 |
| MS.gene95893.t1 | MTR_1g060190 | 48.485 | 165 | 83 | 2 | 1 | 163 | 1 | 165 | 1.24e-51 | 163 |
| MS.gene95893.t1 | MTR_7g006630 | 51.829 | 164 | 76 | 3 | 6 | 167 | 1 | 163 | 1.24e-47 | 153 |
| MS.gene95893.t1 | MTR_7g006690 | 50.888 | 169 | 80 | 3 | 1 | 167 | 1 | 168 | 1.42e-47 | 153 |
| MS.gene95893.t1 | MTR_7g085020 | 48.765 | 162 | 81 | 2 | 7 | 167 | 8 | 168 | 2.22e-46 | 150 |
| MS.gene95893.t1 | MTR_7g085040 | 46.626 | 163 | 81 | 4 | 6 | 167 | 6 | 163 | 7.50e-43 | 140 |
| MS.gene95893.t1 | MTR_5g078320 | 82.667 | 75 | 13 | 0 | 99 | 173 | 15 | 89 | 2.16e-39 | 129 |
| MS.gene95893.t1 | MTR_7g052830 | 85.294 | 34 | 5 | 0 | 68 | 101 | 1 | 34 | 1.63e-13 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95893.t1 | AT1G18100 | 76.879 | 173 | 39 | 1 | 2 | 173 | 1 | 173 | 2.80e-99 | 284 |
| MS.gene95893.t1 | AT5G62040 | 48.851 | 174 | 87 | 2 | 2 | 173 | 1 | 174 | 2.26e-57 | 178 |
| MS.gene95893.t1 | AT2G27550 | 51.429 | 175 | 83 | 2 | 1 | 173 | 1 | 175 | 8.23e-56 | 174 |
| MS.gene95893.t1 | AT5G03840 | 46.154 | 169 | 90 | 1 | 6 | 173 | 9 | 177 | 1.09e-53 | 168 |
| MS.gene95893.t1 | AT4G20370 | 51.786 | 168 | 79 | 2 | 1 | 167 | 1 | 167 | 2.71e-53 | 167 |
| MS.gene95893.t1 | AT1G65480 | 50.617 | 162 | 78 | 2 | 7 | 167 | 7 | 167 | 1.62e-52 | 165 |
| MS.gene95893.t1 | AT1G65480 | 50.617 | 162 | 78 | 2 | 7 | 167 | 51 | 211 | 2.58e-52 | 166 |
Find 58 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAGCCTGAGGCTCCTTC+TGG | 0.225327 | 4.3:-574733 | None:intergenic |
| CTCACGCATGCTTGGCTCAC+TGG | 0.232917 | 4.3:-573112 | None:intergenic |
| CAACCATTTGTGACATGTTT+AGG | 0.256839 | 4.3:-572894 | None:intergenic |
| GGCTGCCTCGGTTGATCCTT+TGG | 0.316826 | 4.3:+572800 | MS.gene95893:CDS |
| CGCTTTGGGTTTGTTCCTCC+AGG | 0.320975 | 4.3:-573308 | None:intergenic |
| TCACTGGGGCTTGGTGCATC+TGG | 0.323583 | 4.3:-573096 | None:intergenic |
| GGCTGCTCAACCATTCCTAT+TGG | 0.334282 | 4.3:-574626 | None:intergenic |
| ATGCTTGGCTCACTGGGGCT+TGG | 0.342918 | 4.3:-573105 | None:intergenic |
| TCACGCATGCTTGGCTCACT+GGG | 0.352667 | 4.3:-573111 | None:intergenic |
| TGGATACCAACCGGTGGTTT+TGG | 0.353965 | 4.3:-574569 | None:intergenic |
| AGGATCGTGGTTGACATTCC+TGG | 0.370693 | 4.3:+573290 | MS.gene95893:intron |
| CTTAGCCTGAGGCTCCTTCT+GGG | 0.376302 | 4.3:-574732 | None:intergenic |
| AAGGAGATTCTTCCATATAT+AGG | 0.387575 | 4.3:+574545 | MS.gene95893:CDS |
| CCACCCAAGGTCACTCTCAC+TGG | 0.397435 | 4.3:+572945 | MS.gene95893:CDS |
| TGGTATCCACCGATACATAT+TGG | 0.404436 | 4.3:+574583 | MS.gene95893:CDS |
| TTTGAGCAGAAGGGACCAAT+AGG | 0.418830 | 4.3:+574611 | MS.gene95893:CDS |
| TTGGTGGTTGGTCGTGTGAT+TGG | 0.419912 | 4.3:+572819 | MS.gene95893:CDS |
| CCAGTGAGAGTGACCTTGGG+TGG | 0.438911 | 4.3:-572945 | None:intergenic |
| GTTGGCATGTCTGTTTACTT+TGG | 0.474660 | 4.3:+572870 | MS.gene95893:CDS |
| GCATGCGTGAGCTGATACAC+TGG | 0.479766 | 4.3:+573124 | MS.gene95893:CDS |
| GGTCCTAAACATGTCACAAA+TGG | 0.480505 | 4.3:+572891 | MS.gene95893:CDS |
| TGTATCAGCTCACGCATGCT+TGG | 0.481710 | 4.3:-573120 | None:intergenic |
| TCGGTTGATCCTTTGGTGGT+TGG | 0.485892 | 4.3:+572807 | MS.gene95893:CDS |
| GACATGTTCATTCCATCTGT+TGG | 0.499828 | 4.3:+572852 | MS.gene95893:CDS |
| GTTTCCAGTGAGAGTGACCT+TGG | 0.510114 | 4.3:-572949 | None:intergenic |
| AGAAGGAGCCTCAGGCTAAG+AGG | 0.523160 | 4.3:+574735 | MS.gene95893:CDS |
| TTAAAGTAGACTGTAGCTAC+AGG | 0.523873 | 4.3:-574707 | None:intergenic |
| TGCCTCGGTTGATCCTTTGG+TGG | 0.525528 | 4.3:+572803 | MS.gene95893:CDS |
| ATGTATCGGTGGATACCAAC+CGG | 0.527511 | 4.3:-574578 | None:intergenic |
| TAACTCCCAGAAGGAGCCTC+AGG | 0.529044 | 4.3:+574727 | MS.gene95893:CDS |
| GGTCACTCTCACTGGAAACA+TGG | 0.545850 | 4.3:+572953 | MS.gene95893:CDS |
| TTTGCAAGTCAATTGAACCT+TGG | 0.546466 | 4.3:+574680 | MS.gene95893:CDS |
| GGTGGGTTGATAGCCATGGA+TGG | 0.548514 | 4.3:-572927 | None:intergenic |
| CAGTGAGAGTGACCTTGGGT+GGG | 0.551987 | 4.3:-572944 | None:intergenic |
| TTTCCAGTGAGAGTGACCTT+GGG | 0.557115 | 4.3:-572948 | None:intergenic |
| CTTGGGTGGGTTGATAGCCA+TGG | 0.562286 | 4.3:-572931 | None:intergenic |
| GGTGATCATGATGGCTGCCT+CGG | 0.563998 | 4.3:+572788 | None:intergenic |
| TAAACAGACATGCCAACAGA+TGG | 0.565070 | 4.3:-572864 | None:intergenic |
| CAAACAAAACCAATATGTAT+CGG | 0.565284 | 4.3:-574592 | None:intergenic |
| AGTGTTGAAACTGACTCTAC+TGG | 0.584655 | 4.3:-574651 | None:intergenic |
| AGTGACTGACCAGAGTGTAA+AGG | 0.591329 | 4.3:-572980 | None:intergenic |
| ATCACACGACCAACCACCAA+AGG | 0.596985 | 4.3:-572816 | None:intergenic |
| CATGGATAACCTTTACACTC+TGG | 0.613038 | 4.3:+572971 | MS.gene95893:CDS |
| TTGTGACATAAAGCCATCCA+TGG | 0.620992 | 4.3:+572914 | MS.gene95893:CDS |
| CACGCATGCTTGGCTCACTG+GGG | 0.621761 | 4.3:-573110 | None:intergenic |
| ACAAAACCAATATGTATCGG+TGG | 0.631832 | 4.3:-574589 | None:intergenic |
| CATGGCTATCAACCCACCCA+AGG | 0.643435 | 4.3:+572932 | MS.gene95893:CDS |
| AGTCTACTTTAACTCCCAGA+AGG | 0.644955 | 4.3:+574718 | MS.gene95893:CDS |
| GCAGAAGGGACCAATAGGAA+TGG | 0.646075 | 4.3:+574616 | MS.gene95893:CDS |
| ATAGGACCAAAACCACCGGT+TGG | 0.655362 | 4.3:+574563 | MS.gene95893:CDS |
| CTTCAACGCCTCTTAGCCTG+AGG | 0.661949 | 4.3:-574743 | None:intergenic |
| ATATATAGGACCAAAACCAC+CGG | 0.662745 | 4.3:+574559 | MS.gene95893:CDS |
| TTGAAACTGACTCTACTGGT+TGG | 0.690180 | 4.3:-574647 | None:intergenic |
| GGAGGAACAAACCCAAAGCG+AGG | 0.693274 | 4.3:+573311 | MS.gene95893:CDS |
| AACCACCAAAGGATCAACCG+AGG | 0.707404 | 4.3:-572805 | None:intergenic |
| ATCGTGGTTGACATTCCTGG+AGG | 0.727325 | 4.3:+573293 | MS.gene95893:CDS |
| TATCGGTGGATACCAACCGG+TGG | 0.737473 | 4.3:-574575 | None:intergenic |
| CTGTAGCTACAGGAAGACCA+AGG | 0.739753 | 4.3:-574697 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCATATCAAAATAAAAAT+AGG | - | chr4.3:573242-573261 | None:intergenic | 10.0% |
| !! | TTCATATCAAAATAAAAATA+GGG | - | chr4.3:573241-573260 | None:intergenic | 10.0% |
| !!! | TAAAAGAATTAATTTTTGAT+CGG | + | chr4.3:573340-573359 | MS.gene95893:intron | 10.0% |
| !!! | TGAGTTTATATAATTTTTTT+TGG | + | chr4.3:573451-573470 | MS.gene95893:intron | 10.0% |
| !! | AAACTAAGAAAAATAATTTG+TGG | - | chr4.3:573803-573822 | None:intergenic | 15.0% |
| !! | AAATTATAGAGTATGTATAA+AGG | - | chr4.3:574459-574478 | None:intergenic | 15.0% |
| !! | TTTACGAAAAAATAAATGTT+TGG | - | chr4.3:573914-573933 | None:intergenic | 15.0% |
| !!! | AACCTTAATTAATTTTTCTT+TGG | + | chr4.3:574512-574531 | MS.gene95893:intron | 15.0% |
| !! | AGCATATAAAATATTGCTAA+AGG | + | chr4.3:574187-574206 | MS.gene95893:intron | 20.0% |
| !! | ATCAAAATAAAAATAGGGAA+GGG | - | chr4.3:573236-573255 | None:intergenic | 20.0% |
| !! | CACCAAAGAAAAATTAATTA+AGG | - | chr4.3:574517-574536 | None:intergenic | 20.0% |
| !! | TATCAAAATAAAAATAGGGA+AGG | - | chr4.3:573237-573256 | None:intergenic | 20.0% |
| !!! | ATATATGATCAAAGTTTTGA+TGG | + | chr4.3:573033-573052 | MS.gene95893:intron | 20.0% |
| !!! | CAAAAAAGTATGAAGTATTT+GGG | - | chr4.3:573979-573998 | None:intergenic | 20.0% |
| !!! | CTTCAAGTTTTCATTTTTTA+AGG | + | chr4.3:573270-573289 | MS.gene95893:intron | 20.0% |
| !!! | TCAAAAAAGTATGAAGTATT+TGG | - | chr4.3:573980-573999 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTATATTGAATCC+TGG | + | chr4.3:573712-573731 | MS.gene95893:intron | 20.0% |
| !!! | TTTTCTTCTTATTATGTACA+CGG | + | chr4.3:573380-573399 | MS.gene95893:intron | 20.0% |
| ! | AGTGCAAAAACTAGTTAATT+AGG | - | chr4.3:573866-573885 | None:intergenic | 25.0% |
| ! | CAAACAAAACCAATATGTAT+CGG | - | chr4.3:574595-574614 | None:intergenic | 25.0% |
| ! | TCAAAATAAAAATAGGGAAG+GGG | - | chr4.3:573235-573254 | None:intergenic | 25.0% |
| ! | TGATTTCAGAAATGTTTGTT+TGG | + | chr4.3:573534-573553 | MS.gene95893:intron | 25.0% |
| !! | AACATGCATGAATCTATTTT+CGG | + | chr4.3:573574-573593 | MS.gene95893:intron | 25.0% |
| !! | TTTTATATATACCTCGCTTT+GGG | - | chr4.3:573325-573344 | None:intergenic | 25.0% |
| !!! | AATTAACTAGTTTTTGCACT+CGG | + | chr4.3:573866-573885 | MS.gene95893:intron | 25.0% |
| !!! | ACATTTCTGAAATCAACAAT+CGG | - | chr4.3:573529-573548 | None:intergenic | 25.0% |
| !!! | TTTTCATTTTTTAAGGATCG+TGG | + | chr4.3:573277-573296 | MS.gene95893:intron | 25.0% |
| !!! | TTTTTTTGGATGACATACAA+TGG | + | chr4.3:573465-573484 | MS.gene95893:intron | 25.0% |
| AAGGAGATTCTTCCATATAT+AGG | + | chr4.3:574545-574564 | MS.gene95893:CDS | 30.0% | |
| CGTTTGTTTGTGTAAATCAA+CGG | + | chr4.3:574392-574411 | MS.gene95893:intron | 30.0% | |
| TATATGCTCTAACTAAAGTG+TGG | - | chr4.3:574175-574194 | None:intergenic | 30.0% | |
| ! | CTTTTATATATACCTCGCTT+TGG | - | chr4.3:573326-573345 | None:intergenic | 30.0% |
| ! | GTTGATTTACACAAACAAAC+GGG | - | chr4.3:574393-574412 | None:intergenic | 30.0% |
| ! | TACAATGGTGTTAAACTTGA+TGG | + | chr4.3:573480-573499 | MS.gene95893:intron | 30.0% |
| ! | TTTCGGCTTTTTGCATATTT+AGG | + | chr4.3:573591-573610 | MS.gene95893:intron | 30.0% |
| ! | TTTTCACTTATCATGTTGCA+TGG | + | chr4.3:573427-573446 | MS.gene95893:intron | 30.0% |
| !! | ACTGTTCTCTTTAAAACAAG+TGG | - | chr4.3:574145-574164 | None:intergenic | 30.0% |
| !! | AGATACACCAATTTTGAAGA+CGG | + | chr4.3:574022-574041 | MS.gene95893:intron | 30.0% |
| !! | CGTTGATTTACACAAACAAA+CGG | - | chr4.3:574394-574413 | None:intergenic | 30.0% |
| !!! | TAACAATTTTTTGTGCATGC+AGG | + | chr4.3:573062-573081 | MS.gene95893:intron | 30.0% |
| !!! | TAATTTTTCTTTGGTGTTGC+AGG | + | chr4.3:574521-574540 | MS.gene95893:intron | 30.0% |
| !!! | TGTGCTAATTGTTTTTAGCA+AGG | - | chr4.3:574293-574312 | None:intergenic | 30.0% |
| ACAAAACCAATATGTATCGG+TGG | - | chr4.3:574592-574611 | None:intergenic | 35.0% | |
| ACGGGCATGATTTATGTTAA+AGG | - | chr4.3:574375-574394 | None:intergenic | 35.0% | |
| ATATATAGGACCAAAACCAC+CGG | + | chr4.3:574559-574578 | MS.gene95893:CDS | 35.0% | |
| CAACCATTTGTGACATGTTT+AGG | - | chr4.3:572897-572916 | None:intergenic | 35.0% | |
| TTAAAGTAGACTGTAGCTAC+AGG | - | chr4.3:574710-574729 | None:intergenic | 35.0% | |
| TTTGCAAGTCAATTGAACCT+TGG | + | chr4.3:574680-574699 | MS.gene95893:CDS | 35.0% | |
| !! | GATACACCAATTTTGAAGAC+GGG | + | chr4.3:574023-574042 | MS.gene95893:intron | 35.0% |
| !!! | ATTGGTTTTGTTTGAGCAGA+AGG | + | chr4.3:574601-574620 | MS.gene95893:CDS | 35.0% |
| !!! | TTGGTTTTGTTTGAGCAGAA+GGG | + | chr4.3:574602-574621 | MS.gene95893:CDS | 35.0% |
| AAGACACCCGTCTTCAAAAT+TGG | - | chr4.3:574032-574051 | None:intergenic | 40.0% | |
| AGTCTACTTTAACTCCCAGA+AGG | + | chr4.3:574718-574737 | MS.gene95893:CDS | 40.0% | |
| AGTGTGAGAAGCTCATTTGT+TGG | - | chr4.3:573693-573712 | None:intergenic | 40.0% | |
| CATGGATAACCTTTACACTC+TGG | + | chr4.3:572971-572990 | MS.gene95893:CDS | 40.0% | |
| GACATGTTCATTCCATCTGT+TGG | + | chr4.3:572852-572871 | MS.gene95893:CDS | 40.0% | |
| GGTCCTAAACATGTCACAAA+TGG | + | chr4.3:572891-572910 | MS.gene95893:CDS | 40.0% | |
| GTTGGCATGTCTGTTTACTT+TGG | + | chr4.3:572870-572889 | MS.gene95893:CDS | 40.0% | |
| TAAACAGACATGCCAACAGA+TGG | - | chr4.3:572867-572886 | None:intergenic | 40.0% | |
| TGAAATCAACAATCGGCTAG+TGG | - | chr4.3:573522-573541 | None:intergenic | 40.0% | |
| TGGAAGACAACATTGAATCC+AGG | - | chr4.3:573733-573752 | None:intergenic | 40.0% | |
| TGGTATCCACCGATACATAT+TGG | + | chr4.3:574583-574602 | MS.gene95893:CDS | 40.0% | |
| TTGTGACATAAAGCCATCCA+TGG | + | chr4.3:572914-572933 | MS.gene95893:CDS | 40.0% | |
| ! | AGTGTTGAAACTGACTCTAC+TGG | - | chr4.3:574654-574673 | None:intergenic | 40.0% |
| ! | CATTTGTTGGATTGAAGCAG+TGG | - | chr4.3:573680-573699 | None:intergenic | 40.0% |
| ! | TTGAAACTGACTCTACTGGT+TGG | - | chr4.3:574650-574669 | None:intergenic | 40.0% |
| !! | TTTCTTTGGTGTTGCAGGAA+AGG | + | chr4.3:574526-574545 | MS.gene95893:intron | 40.0% |
| !!! | GGTGGTTTTGGTCCTATATA+TGG | - | chr4.3:574560-574579 | None:intergenic | 40.0% |
| ACGTTTCCTGTGTGACACAT+TGG | - | chr4.3:574121-574140 | None:intergenic | 45.0% | |
| AGATCATCACACGTAGCATG+TGG | + | chr4.3:574058-574077 | MS.gene95893:intron | 45.0% | |
| AGTGACTGACCAGAGTGTAA+AGG | - | chr4.3:572983-573002 | None:intergenic | 45.0% | |
| TCATGACCAATGTGTCACAC+AGG | + | chr4.3:574112-574131 | MS.gene95893:intron | 45.0% | |
| TGCTACGTGTGATGATCTCA+AGG | - | chr4.3:574056-574075 | None:intergenic | 45.0% | |
| TGGATTGAAGCAGTGGAACA+AGG | - | chr4.3:573673-573692 | None:intergenic | 45.0% | |
| TTTCCAGTGAGAGTGACCTT+GGG | - | chr4.3:572951-572970 | None:intergenic | 45.0% | |
| TTTGAGCAGAAGGGACCAAT+AGG | + | chr4.3:574611-574630 | MS.gene95893:CDS | 45.0% | |
| ! | ATGTATCGGTGGATACCAAC+CGG | - | chr4.3:574581-574600 | None:intergenic | 45.0% |
| ! | TGGCTTGCATGTCACAAAAG+TGG | + | chr4.3:574078-574097 | MS.gene95893:intron | 45.0% |
| AACCACCAAAGGATCAACCG+AGG | - | chr4.3:572808-572827 | None:intergenic | 50.0% | |
| AGGATCGTGGTTGACATTCC+TGG | + | chr4.3:573290-573309 | MS.gene95893:intron | 50.0% | |
| ATAGGACCAAAACCACCGGT+TGG | + | chr4.3:574563-574582 | MS.gene95893:CDS | 50.0% | |
| ATCACACGACCAACCACCAA+AGG | - | chr4.3:572819-572838 | None:intergenic | 50.0% | |
| ATCGTGGTTGACATTCCTGG+AGG | + | chr4.3:573293-573312 | MS.gene95893:CDS | 50.0% | |
| CTGTAGCTACAGGAAGACCA+AGG | - | chr4.3:574700-574719 | None:intergenic | 50.0% | |
| GAAGCACGCACGAATAGACA+TGG | - | chr4.3:574419-574438 | None:intergenic | 50.0% | |
| GCAGAAGGGACCAATAGGAA+TGG | + | chr4.3:574616-574635 | MS.gene95893:CDS | 50.0% | |
| GGCTGCTCAACCATTCCTAT+TGG | - | chr4.3:574629-574648 | None:intergenic | 50.0% | |
| GGTCACTCTCACTGGAAACA+TGG | + | chr4.3:572953-572972 | MS.gene95893:CDS | 50.0% | |
| GTTTCCAGTGAGAGTGACCT+TGG | - | chr4.3:572952-572971 | None:intergenic | 50.0% | |
| TGTATCAGCTCACGCATGCT+TGG | - | chr4.3:573123-573142 | None:intergenic | 50.0% | |
| ! | TCGGTTGATCCTTTGGTGGT+TGG | + | chr4.3:572807-572826 | MS.gene95893:CDS | 50.0% |
| ! | TGGATACCAACCGGTGGTTT+TGG | - | chr4.3:574572-574591 | None:intergenic | 50.0% |
| ! | TTGGTGGTTGGTCGTGTGAT+TGG | + | chr4.3:572819-572838 | MS.gene95893:CDS | 50.0% |
| AGAAGGAGCCTCAGGCTAAG+AGG | + | chr4.3:574735-574754 | MS.gene95893:CDS | 55.0% | |
| CAGTGAGAGTGACCTTGGGT+GGG | - | chr4.3:572947-572966 | None:intergenic | 55.0% | |
| CATGCAGCACAGGTGGAAGA+TGG | - | chr4.3:573753-573772 | None:intergenic | 55.0% | |
| CATGGCTATCAACCCACCCA+AGG | + | chr4.3:572932-572951 | MS.gene95893:CDS | 55.0% | |
| CTTAGCCTGAGGCTCCTTCT+GGG | - | chr4.3:574735-574754 | None:intergenic | 55.0% | |
| GCATGCGTGAGCTGATACAC+TGG | + | chr4.3:573124-573143 | MS.gene95893:CDS | 55.0% | |
| GGAGGAACAAACCCAAAGCG+AGG | + | chr4.3:573311-573330 | MS.gene95893:CDS | 55.0% | |
| TAACTCCCAGAAGGAGCCTC+AGG | + | chr4.3:574727-574746 | MS.gene95893:CDS | 55.0% | |
| TATCGGTGGATACCAACCGG+TGG | - | chr4.3:574578-574597 | None:intergenic | 55.0% | |
| TCACGCATGCTTGGCTCACT+GGG | - | chr4.3:573114-573133 | None:intergenic | 55.0% | |
| TCTTAGCCTGAGGCTCCTTC+TGG | - | chr4.3:574736-574755 | None:intergenic | 55.0% | |
| TCTTCCACCTGTGCTGCATG+TGG | + | chr4.3:573753-573772 | MS.gene95893:intron | 55.0% | |
| TGCCTCGGTTGATCCTTTGG+TGG | + | chr4.3:572803-572822 | MS.gene95893:CDS | 55.0% | |
| ! | CGCTTTGGGTTTGTTCCTCC+AGG | - | chr4.3:573311-573330 | None:intergenic | 55.0% |
| !! | CTTGGGTGGGTTGATAGCCA+TGG | - | chr4.3:572934-572953 | None:intergenic | 55.0% |
| !! | GGTGGGTTGATAGCCATGGA+TGG | - | chr4.3:572930-572949 | None:intergenic | 55.0% |
| ATAGCCGCCACATGCAGCAC+AGG | - | chr4.3:573763-573782 | None:intergenic | 60.0% | |
| ATGCTTGGCTCACTGGGGCT+TGG | - | chr4.3:573108-573127 | None:intergenic | 60.0% | |
| CACGCATGCTTGGCTCACTG+GGG | - | chr4.3:573113-573132 | None:intergenic | 60.0% | |
| CCACCCAAGGTCACTCTCAC+TGG | + | chr4.3:572945-572964 | MS.gene95893:CDS | 60.0% | |
| CCAGTGAGAGTGACCTTGGG+TGG | - | chr4.3:572948-572967 | None:intergenic | 60.0% | |
| CTCACGCATGCTTGGCTCAC+TGG | - | chr4.3:573115-573134 | None:intergenic | 60.0% | |
| GGCTGCCTCGGTTGATCCTT+TGG | + | chr4.3:572800-572819 | MS.gene95893:CDS | 60.0% | |
| TCCACCTGTGCTGCATGTGG+CGG | + | chr4.3:573756-573775 | MS.gene95893:intron | 60.0% | |
| !! | TCACTGGGGCTTGGTGCATC+TGG | - | chr4.3:573099-573118 | None:intergenic | 60.0% |
| GCCGCCACATGCAGCACAGG+TGG | - | chr4.3:573760-573779 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 572795 | 574763 | 572795 | ID=MS.gene95893 |
| chr4.3 | mRNA | 572795 | 574763 | 572795 | ID=MS.gene95893.t1;Parent=MS.gene95893 |
| chr4.3 | exon | 572795 | 572992 | 572795 | ID=MS.gene95893.t1.exon1;Parent=MS.gene95893.t1 |
| chr4.3 | CDS | 572795 | 572992 | 572795 | ID=cds.MS.gene95893.t1;Parent=MS.gene95893.t1 |
| chr4.3 | exon | 573084 | 573145 | 573084 | ID=MS.gene95893.t1.exon2;Parent=MS.gene95893.t1 |
| chr4.3 | CDS | 573084 | 573145 | 573084 | ID=cds.MS.gene95893.t1;Parent=MS.gene95893.t1 |
| chr4.3 | exon | 573292 | 573332 | 573292 | ID=MS.gene95893.t1.exon3;Parent=MS.gene95893.t1 |
| chr4.3 | CDS | 573292 | 573332 | 573292 | ID=cds.MS.gene95893.t1;Parent=MS.gene95893.t1 |
| chr4.3 | exon | 574543 | 574763 | 574543 | ID=MS.gene95893.t1.exon4;Parent=MS.gene95893.t1 |
| chr4.3 | CDS | 574543 | 574763 | 574543 | ID=cds.MS.gene95893.t1;Parent=MS.gene95893.t1 |
| Gene Sequence |
| Protein sequence |
