Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97933.t1 | XP_013446173.1 | 94.5 | 469 | 6 | 1 | 1 | 449 | 42 | 510 | 1.60E-243 | 851.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97933.t1 | Q9LPV5 | 72.9 | 450 | 102 | 1 | 1 | 430 | 44 | 493 | 2.2e-185 | 649.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97933.t1 | A0A072U314 | 94.5 | 469 | 6 | 1 | 1 | 449 | 42 | 510 | 1.1e-243 | 851.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056444 | MS.gene97933 | 0.89698 | 2.19E-76 | -1.69E-46 |
| MS.gene05686 | MS.gene97933 | 0.80978 | 1.60E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene007704 | MS.gene97933 | PPI |
| MS.gene97933 | MS.gene050095 | PPI |
| MS.gene08732 | MS.gene97933 | PPI |
| MS.gene97933 | MS.gene007705 | PPI |
| MS.gene97933 | MS.gene08733 | PPI |
| MS.gene97933 | MS.gene050096 | PPI |
| MS.gene08666 | MS.gene97933 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97933.t1 | MTR_8g069775 | 94.456 | 469 | 6 | 1 | 1 | 449 | 42 | 510 | 0.0 | 882 |
| MS.gene97933.t1 | MTR_4g057890 | 59.829 | 468 | 165 | 3 | 1 | 448 | 62 | 526 | 0.0 | 578 |
| MS.gene97933.t1 | MTR_4g057865 | 59.615 | 468 | 166 | 3 | 1 | 448 | 62 | 526 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97933.t1 | AT1G12940 | 72.889 | 450 | 102 | 1 | 1 | 430 | 44 | 493 | 0.0 | 673 |
| MS.gene97933.t1 | AT5G60770 | 56.688 | 471 | 177 | 3 | 1 | 449 | 62 | 527 | 0.0 | 556 |
| MS.gene97933.t1 | AT1G08090 | 56.051 | 471 | 183 | 3 | 1 | 449 | 62 | 530 | 0.0 | 548 |
| MS.gene97933.t1 | AT1G08100 | 56.264 | 455 | 178 | 2 | 1 | 434 | 60 | 514 | 0.0 | 528 |
| MS.gene97933.t1 | AT5G60780 | 55.626 | 471 | 187 | 2 | 1 | 449 | 69 | 539 | 0.0 | 521 |
| MS.gene97933.t1 | AT3G45060 | 56.051 | 471 | 185 | 2 | 1 | 449 | 72 | 542 | 0.0 | 521 |
| MS.gene97933.t1 | AT5G14570 | 50.111 | 451 | 191 | 2 | 3 | 420 | 41 | 490 | 4.52e-153 | 444 |
Find 78 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGGTGTTGCATCTGTTTC+TGG | 0.074073 | 8.4:-33765936 | MS.gene97933:CDS |
| TTGAACCAAAATCTTGTATA+AGG | 0.172084 | 8.4:+33765169 | None:intergenic |
| TTCCAGCTGTGTGAAGTTTA+AGG | 0.193334 | 8.4:+33764868 | None:intergenic |
| TGGTTTATTATCTGATTTAA+TGG | 0.218179 | 8.4:-33764796 | MS.gene97933:CDS |
| CTTCTTGTGAGGTTCTTTAC+TGG | 0.225051 | 8.4:-33765780 | MS.gene97933:CDS |
| GCTGCTTGTGGAATGACTTT+TGG | 0.252766 | 8.4:-33764630 | MS.gene97933:CDS |
| TTGGAATGAGGGGTAGATTA+TGG | 0.258780 | 8.4:-33764764 | MS.gene97933:CDS |
| GATTTAATGGCTAAGAGATT+TGG | 0.279825 | 8.4:-33764783 | MS.gene97933:CDS |
| TTGACTTATGGTTATTGTTT+TGG | 0.287818 | 8.4:-33764945 | MS.gene97933:CDS |
| GGAATCATTGCTGCAAGTTT+TGG | 0.298019 | 8.4:-33764849 | MS.gene97933:CDS |
| GGTGGGTGGGGTAACCTTGG+TGG | 0.319262 | 8.4:-33765228 | MS.gene97933:CDS |
| GGAAAATATATTAAGAATAA+TGG | 0.321070 | 8.4:+33763491 | None:intergenic |
| TATCATAGTTTGAAGAAATC+AGG | 0.346076 | 8.4:-33765042 | MS.gene97933:intron |
| TTAAGGTTGTCACGGATTAT+AGG | 0.361381 | 8.4:+33765984 | None:intergenic |
| AGAAAGAGGAATAACTCTAA+TGG | 0.367970 | 8.4:-33763540 | MS.gene97933:CDS |
| AATGGGAACTGCTTGTGATT+TGG | 0.383228 | 8.4:-33765892 | MS.gene97933:CDS |
| ATCCTTTGAAGAAAATTAGT+TGG | 0.392329 | 8.4:+33763576 | None:intergenic |
| TATCCGTTGCTGTTAGGTTA+AGG | 0.394367 | 8.4:+33765967 | None:intergenic |
| AACCTAACAGCAACGGATAT+AGG | 0.398418 | 8.4:-33765963 | MS.gene97933:CDS |
| TGAACCAAAATCTTGTATAA+GGG | 0.403906 | 8.4:+33765170 | None:intergenic |
| GAAAGAGGAATAACTCTAAT+GGG | 0.408051 | 8.4:-33763539 | MS.gene97933:CDS |
| AACCTTAAACTTCACACAGC+TGG | 0.420935 | 8.4:-33764870 | MS.gene97933:CDS |
| TCTATTATCAATTCTCCTAC+TGG | 0.423158 | 8.4:-33765807 | MS.gene97933:CDS |
| TTCCTATATCCGTTGCTGTT+AGG | 0.424382 | 8.4:+33765961 | None:intergenic |
| CACAGAAGAAGATTACTATA+TGG | 0.427355 | 8.4:-33763426 | MS.gene97933:CDS |
| TCAGGTGGGTGGGGTAACCT+TGG | 0.436260 | 8.4:-33765231 | MS.gene97933:intron |
| GGAAGAGCAAATGGTTTCTC+AGG | 0.441053 | 8.4:-33765690 | MS.gene97933:intron |
| TGCTAGCATTTCATCTATCA+TGG | 0.442197 | 8.4:-33766058 | MS.gene97933:CDS |
| GGGTGGGGTAACCTTGGTGG+AGG | 0.446755 | 8.4:-33765225 | MS.gene97933:CDS |
| ACTGTTGTTGGAAGAGCAAA+TGG | 0.454937 | 8.4:-33765699 | MS.gene97933:CDS |
| TCCTTTGAAGAAAATTAGTT+GGG | 0.459131 | 8.4:+33763577 | None:intergenic |
| AGGTCCTTAGGAGTCATATC+AGG | 0.460197 | 8.4:-33763638 | MS.gene97933:CDS |
| GGCTAAGAGATTTGGAATGA+GGG | 0.467670 | 8.4:-33764775 | MS.gene97933:CDS |
| TGGATTTGTCAAACGTTGGC+TGG | 0.472815 | 8.4:-33764735 | MS.gene97933:CDS |
| GGGGTAGATTATGGTGTTTG+TGG | 0.475044 | 8.4:-33764755 | MS.gene97933:CDS |
| TATGGTTTCTCAGGTGGGTG+GGG | 0.476787 | 8.4:-33765240 | MS.gene97933:intron |
| TGGCTAAGAGATTTGGAATG+AGG | 0.480994 | 8.4:-33764776 | MS.gene97933:CDS |
| TGCAACAAATTCAGGTCCTT+AGG | 0.486150 | 8.4:-33763650 | MS.gene97933:intron |
| AAACTATGATAATTACCATC+TGG | 0.492765 | 8.4:+33765054 | None:intergenic |
| ACATACCTTCTTGAGACAAA+AGG | 0.496721 | 8.4:+33764600 | None:intergenic |
| ATATGGTTTCTCAGGTGGGT+GGG | 0.498713 | 8.4:-33765241 | MS.gene97933:intron |
| TTCAGCTATGATATTGTCAA+TGG | 0.501509 | 8.4:+33764911 | None:intergenic |
| GATAATAGTAGAAGTGAAAG+AGG | 0.507879 | 8.4:-33763344 | MS.gene97933:CDS |
| AAGATTACTATATGGCTGAA+TGG | 0.518793 | 8.4:-33763418 | MS.gene97933:CDS |
| GTTCAACAAAATTCACTGCA+TGG | 0.520686 | 8.4:-33765152 | MS.gene97933:CDS |
| AACTCAAAGGAGAGGGAGAA+AGG | 0.520853 | 8.4:-33763395 | MS.gene97933:CDS |
| TAAGGTGCATATTATGATCA+TGG | 0.523894 | 8.4:+33763514 | None:intergenic |
| CATTCCTGATATGACTCCTA+AGG | 0.529469 | 8.4:+33763634 | None:intergenic |
| TCAGATAATAAACCACCTCC+TGG | 0.536893 | 8.4:+33764804 | None:intergenic |
| CTGTTAGGTTAAGGTTGTCA+CGG | 0.537447 | 8.4:+33765976 | None:intergenic |
| GGAGTCATATCAGGAATGAC+AGG | 0.542118 | 8.4:-33763629 | MS.gene97933:CDS |
| TTTGGTCAAGATTTACCAGA+TGG | 0.543573 | 8.4:-33765069 | MS.gene97933:CDS |
| TCAGGAATGACAGGAGGAGG+AGG | 0.547520 | 8.4:-33763620 | MS.gene97933:CDS |
| CTGAATGGAACTCAAAGGAG+AGG | 0.547602 | 8.4:-33763403 | MS.gene97933:CDS |
| GGAACTGCTTGTGATTTGGT+TGG | 0.550581 | 8.4:-33765888 | MS.gene97933:CDS |
| GCAACGGATATAGGAAATGC+TGG | 0.559363 | 8.4:-33765954 | MS.gene97933:CDS |
| AATATGGTTTCTCAGGTGGG+TGG | 0.562582 | 8.4:-33765242 | MS.gene97933:intron |
| GAAAATTGAACATTTCAACT+AGG | 0.568916 | 8.4:-33763319 | MS.gene97933:CDS |
| ATATCAGGAATGACAGGAGG+AGG | 0.569761 | 8.4:-33763623 | MS.gene97933:CDS |
| ATATATTAAGAATAATGGTA+AGG | 0.576979 | 8.4:+33763496 | None:intergenic |
| AGGGAGAAAGGCTCTCATCA+TGG | 0.577211 | 8.4:-33763383 | MS.gene97933:CDS |
| ATAGAAGTGAAGTAAACAGC+AGG | 0.585810 | 8.4:+33765825 | None:intergenic |
| TTTGTGGATTTGTCAAACGT+TGG | 0.593191 | 8.4:-33764739 | MS.gene97933:CDS |
| GCTAAGAGATTTGGAATGAG+GGG | 0.599275 | 8.4:-33764774 | MS.gene97933:CDS |
| AATAGTAGAAGTGAAAGAGG+TGG | 0.601395 | 8.4:-33763341 | MS.gene97933:CDS |
| ACAGGAGGAGGAGGAAACGT+TGG | 0.608583 | 8.4:-33763611 | MS.gene97933:CDS |
| TGAATGGAACTCAAAGGAGA+GGG | 0.609630 | 8.4:-33763402 | MS.gene97933:CDS |
| CATTTCAACTAGGCCATCTG+AGG | 0.610193 | 8.4:-33763309 | MS.gene97933:CDS |
| TATGGCTGAATGGAACTCAA+AGG | 0.622357 | 8.4:-33763408 | MS.gene97933:CDS |
| GGTGGTGTAACATCCTCAGA+TGG | 0.636910 | 8.4:+33763296 | None:intergenic |
| TGTATAAGGGAAAATACAAG+TGG | 0.636963 | 8.4:+33765183 | None:intergenic |
| TCACGGATTATAGGAACAAG+TGG | 0.646242 | 8.4:+33765993 | None:intergenic |
| GTCATATCAGGAATGACAGG+AGG | 0.646603 | 8.4:-33763626 | MS.gene97933:CDS |
| CAACCTTAACCTAACAGCAA+CGG | 0.647550 | 8.4:-33765970 | MS.gene97933:CDS |
| AAAGCAGCAGAAGCAAGACG+AGG | 0.678632 | 8.4:+33765864 | None:intergenic |
| GTTGTGTTGCTCCTCCACCA+AGG | 0.696287 | 8.4:+33765214 | None:intergenic |
| ATTTGCTCTTCCAACAACAG+TGG | 0.700274 | 8.4:+33765701 | None:intergenic |
| CTCACAAGAAGAAAACCAGT+AGG | 0.723236 | 8.4:+33765792 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCAATATGAATAAATT+TGG | + | chr8.4:33763884-33763903 | None:intergenic | 10.0% |
| !! | TAAAAATTAATATATTTGCA+AGG | + | chr8.4:33763828-33763847 | None:intergenic | 10.0% |
| !! | TTAAAATAATGAAAAATGAA+AGG | + | chr8.4:33764770-33764789 | None:intergenic | 10.0% |
| !!! | AACTTTTAACTTTTTTTTTA+AGG | - | chr8.4:33763772-33763791 | MS.gene97933:intron | 10.0% |
| !!! | ATTTAAACTTTTTTTTTTGA+GGG | + | chr8.4:33763735-33763754 | None:intergenic | 10.0% |
| !!! | TATTTAAACTTTTTTTTTTG+AGG | + | chr8.4:33763736-33763755 | None:intergenic | 10.0% |
| !!! | TATTTATTTTGCTTAAAATA+TGG | - | chr8.4:33764084-33764103 | MS.gene97933:intron | 10.0% |
| !!! | TTTTTTTTAAGGTTTAAATA+TGG | - | chr8.4:33763783-33763802 | MS.gene97933:intron | 10.0% |
| !! | ATATATTAAGAATAATGGTA+AGG | + | chr8.4:33765849-33765868 | None:intergenic | 15.0% |
| !! | GGAAAATATATTAAGAATAA+TGG | + | chr8.4:33765854-33765873 | None:intergenic | 15.0% |
| !!! | GCATTTTCAATTTTAATATT+TGG | - | chr8.4:33764255-33764274 | MS.gene97933:intron | 15.0% |
| !! | AAATTAAGCCATTAAATTTG+TGG | + | chr8.4:33765488-33765507 | None:intergenic | 20.0% |
| !! | AATAAAACTCGTAACATTTA+GGG | - | chr8.4:33764889-33764908 | MS.gene97933:CDS | 20.0% |
| !! | TGGTTTATTATCTGATTTAA+TGG | - | chr8.4:33764546-33764565 | MS.gene97933:intron | 20.0% |
| !! | TTTCAAAAGTAATTTACCAA+TGG | - | chr8.4:33764343-33764362 | MS.gene97933:intron | 20.0% |
| !!! | AATATAAACAAATTTTACCG+AGG | - | chr8.4:33763982-33764001 | MS.gene97933:intron | 20.0% |
| !!! | CTTAATATATTTTCCACAAT+GGG | - | chr8.4:33765859-33765878 | MS.gene97933:CDS | 20.0% |
| !!! | TCTTAATATATTTTCCACAA+TGG | - | chr8.4:33765858-33765877 | MS.gene97933:CDS | 20.0% |
| !!! | TGGTCTTATACAATTTTTTA+TGG | - | chr8.4:33765009-33765028 | MS.gene97933:intron | 20.0% |
| !!! | TTAATATATTTTCCACAATG+GGG | - | chr8.4:33765860-33765879 | MS.gene97933:CDS | 20.0% |
| !!! | TTATGGTATTGAATAACTTT+TGG | - | chr8.4:33764989-33765008 | MS.gene97933:intron | 20.0% |
| ! | AAACTATGATAATTACCATC+TGG | + | chr8.4:33764291-33764310 | None:intergenic | 25.0% |
| ! | AATGGTGTGTTAAATTATAG+AGG | - | chr8.4:33764361-33764380 | MS.gene97933:intron | 25.0% |
| ! | ATGGTGTGTTAAATTATAGA+GGG | - | chr8.4:33764362-33764381 | MS.gene97933:intron | 25.0% |
| ! | CAAAAGAACCACAAATTTAA+TGG | - | chr8.4:33765477-33765496 | MS.gene97933:intron | 25.0% |
| ! | CAATAAAACTCGTAACATTT+AGG | - | chr8.4:33764888-33764907 | MS.gene97933:CDS | 25.0% |
| ! | GAAAATTGAACATTTCAACT+AGG | - | chr8.4:33766023-33766042 | MS.gene97933:CDS | 25.0% |
| ! | TAAACTAACTATTGATCGAA+TGG | + | chr8.4:33765344-33765363 | None:intergenic | 25.0% |
| ! | TATCATAGTTTGAAGAAATC+AGG | - | chr8.4:33764300-33764319 | MS.gene97933:intron | 25.0% |
| ! | TCTATAATTTAACACACCAT+TGG | + | chr8.4:33764362-33764381 | None:intergenic | 25.0% |
| ! | TGAAAGAAAAACTTGTAACA+CGG | - | chr8.4:33765585-33765604 | MS.gene97933:intron | 25.0% |
| ! | TGAACCAAAATCTTGTATAA+GGG | + | chr8.4:33764175-33764194 | None:intergenic | 25.0% |
| ! | TTAACATATGCAACAAATTC+AGG | - | chr8.4:33765684-33765703 | MS.gene97933:intron | 25.0% |
| ! | TTGAACCAAAATCTTGTATA+AGG | + | chr8.4:33764176-33764195 | None:intergenic | 25.0% |
| !! | ATCCTTTGAAGAAAATTAGT+TGG | + | chr8.4:33765769-33765788 | None:intergenic | 25.0% |
| !! | TCAAGATTTTCAAAAGAAAG+AGG | - | chr8.4:33765788-33765807 | MS.gene97933:CDS | 25.0% |
| !! | TCCTTTGAAGAAAATTAGTT+GGG | + | chr8.4:33765768-33765787 | None:intergenic | 25.0% |
| !! | TTGACTTATGGTTATTGTTT+TGG | - | chr8.4:33764397-33764416 | MS.gene97933:intron | 25.0% |
| !! | TTTTCCCTTATACAAGATTT+TGG | - | chr8.4:33764168-33764187 | MS.gene97933:intron | 25.0% |
| !!! | AACTAACTTGTTGAACTTAA+GGG | + | chr8.4:33765236-33765255 | None:intergenic | 25.0% |
| !!! | GGTTCTTTTGTTTATTAATG+TGG | + | chr8.4:33765467-33765486 | None:intergenic | 25.0% |
| !!! | TTACGAGTTTTATTGAATCT+GGG | + | chr8.4:33764883-33764902 | None:intergenic | 25.0% |
| !!! | TTGTTGTTTTGTTTTATCCT+CGG | + | chr8.4:33764002-33764021 | None:intergenic | 25.0% |
| !!! | TTTGATTTGCTGAAAAATGA+AGG | + | chr8.4:33765209-33765228 | None:intergenic | 25.0% |
| AAGATTACTATATGGCTGAA+TGG | - | chr8.4:33765924-33765943 | MS.gene97933:CDS | 30.0% | |
| AGAAAGAGGAATAACTCTAA+TGG | - | chr8.4:33765802-33765821 | MS.gene97933:CDS | 30.0% | |
| CACAGAAGAAGATTACTATA+TGG | - | chr8.4:33765916-33765935 | MS.gene97933:CDS | 30.0% | |
| GAAAGAGGAATAACTCTAAT+GGG | - | chr8.4:33765803-33765822 | MS.gene97933:CDS | 30.0% | |
| GATAATAGTAGAAGTGAAAG+AGG | - | chr8.4:33765998-33766017 | MS.gene97933:CDS | 30.0% | |
| GATTTAATGGCTAAGAGATT+TGG | - | chr8.4:33764559-33764578 | MS.gene97933:intron | 30.0% | |
| TAAAATATGGTTTCTCAGGT+GGG | - | chr8.4:33764097-33764116 | MS.gene97933:intron | 30.0% | |
| TAAGGTGCATATTATGATCA+TGG | + | chr8.4:33765831-33765850 | None:intergenic | 30.0% | |
| TCAAAGATTGCAAAAATGCT+GGG | + | chr8.4:33764233-33764252 | None:intergenic | 30.0% | |
| TCATCCTTATGAGACTTAAT+TGG | - | chr8.4:33765539-33765558 | MS.gene97933:intron | 30.0% | |
| TCATTTCTCAAAGAACAACT+AGG | + | chr8.4:33765568-33765587 | None:intergenic | 30.0% | |
| TCTATTATCAATTCTCCTAC+TGG | - | chr8.4:33763535-33763554 | MS.gene97933:CDS | 30.0% | |
| TGAAAAATGAAGGATAGGAT+TGG | + | chr8.4:33765199-33765218 | None:intergenic | 30.0% | |
| TGCTTAAAATATGGTTTCTC+AGG | - | chr8.4:33764093-33764112 | MS.gene97933:intron | 30.0% | |
| TGTAAAACTGTTTCAAAGAC+AGG | + | chr8.4:33765149-33765168 | None:intergenic | 30.0% | |
| TGTATAAGGGAAAATACAAG+TGG | + | chr8.4:33764162-33764181 | None:intergenic | 30.0% | |
| TTAAAATATGGTTTCTCAGG+TGG | - | chr8.4:33764096-33764115 | MS.gene97933:intron | 30.0% | |
| TTCAGCTATGATATTGTCAA+TGG | + | chr8.4:33764434-33764453 | None:intergenic | 30.0% | |
| TTTGCTGAAAAATGAAGGAT+AGG | + | chr8.4:33765204-33765223 | None:intergenic | 30.0% | |
| ! | ACCCAACTAATTTTCTTCAA+AGG | - | chr8.4:33765764-33765783 | MS.gene97933:CDS | 30.0% |
| ! | GAGTACGTGACAAATTTTTA+TGG | - | chr8.4:33764972-33764991 | MS.gene97933:intron | 30.0% |
| ! | GTTTTTGCAAGAATTGCAAT+GGG | - | chr8.4:33763433-33763452 | MS.gene97933:CDS | 30.0% |
| ! | TGTGGTTAATCTCATTTTCA+AGG | + | chr8.4:33765449-33765468 | None:intergenic | 30.0% |
| !! | CAACTAACTTGTTGAACTTA+AGG | + | chr8.4:33765237-33765256 | None:intergenic | 30.0% |
| !! | TGTTTTTGCAAGAATTGCAA+TGG | - | chr8.4:33763432-33763451 | MS.gene97933:CDS | 30.0% |
| !!! | CTTTTGTTTCTACTCAGTTT+TGG | - | chr8.4:33763599-33763618 | MS.gene97933:CDS | 30.0% |
| !!! | GGTGTTTTTTGTGTGATTTT+GGG | - | chr8.4:33764628-33764647 | MS.gene97933:CDS | 30.0% |
| !!! | GTTACGAGTTTTATTGAATC+TGG | + | chr8.4:33764884-33764903 | None:intergenic | 30.0% |
| !!! | TGGATTTTAGCTTTGACTTA+TGG | - | chr8.4:33764385-33764404 | MS.gene97933:intron | 30.0% |
| !!! | TGGTGTTTTTTGTGTGATTT+TGG | - | chr8.4:33764627-33764646 | MS.gene97933:CDS | 30.0% |
| !!! | TTATGGTTATTGTTTTGGTG+TGG | - | chr8.4:33764402-33764421 | MS.gene97933:intron | 30.0% |
| AATAGTAGAAGTGAAAGAGG+TGG | - | chr8.4:33766001-33766020 | MS.gene97933:CDS | 35.0% | |
| ACATACCTTCTTGAGACAAA+AGG | + | chr8.4:33764745-33764764 | None:intergenic | 35.0% | |
| AGTGCTCATTACATTGTCAA+TGG | - | chr8.4:33765419-33765438 | MS.gene97933:intron | 35.0% | |
| ATAGAAGTGAAGTAAACAGC+AGG | + | chr8.4:33763520-33763539 | None:intergenic | 35.0% | |
| CAAAAAGTTGTGATGTGGTT+TGG | - | chr8.4:33765074-33765093 | MS.gene97933:CDS | 35.0% | |
| GTCAAAGATTGCAAAAATGC+TGG | + | chr8.4:33764234-33764253 | None:intergenic | 35.0% | |
| GTCTCCAATTAAGTCTCATA+AGG | + | chr8.4:33765546-33765565 | None:intergenic | 35.0% | |
| GTGTGTTAAATTATAGAGGG+TGG | - | chr8.4:33764365-33764384 | MS.gene97933:intron | 35.0% | |
| GTTCAACAAAATTCACTGCA+TGG | - | chr8.4:33764190-33764209 | MS.gene97933:intron | 35.0% | |
| TGCTAGCATTTCATCTATCA+TGG | - | chr8.4:33763284-33763303 | MS.gene97933:CDS | 35.0% | |
| TGTGACAAAAAGTTGTGATG+TGG | - | chr8.4:33765069-33765088 | MS.gene97933:CDS | 35.0% | |
| TTTGGTCAAGATTTACCAGA+TGG | - | chr8.4:33764273-33764292 | MS.gene97933:intron | 35.0% | |
| TTTGTGGATTTGTCAAACGT+TGG | - | chr8.4:33764603-33764622 | MS.gene97933:intron | 35.0% | |
| ! | ACATCACAACTTTTTGTCAC+AGG | + | chr8.4:33765070-33765089 | None:intergenic | 35.0% |
| ! | ATATATTTTCCACAATGGGG+TGG | - | chr8.4:33765863-33765882 | MS.gene97933:CDS | 35.0% |
| ! | ATGTTTTCTACCACTGTTGT+TGG | - | chr8.4:33763631-33763650 | MS.gene97933:CDS | 35.0% |
| ! | TCTGTGACTTTTGTAGATGA+TGG | + | chr8.4:33765902-33765921 | None:intergenic | 35.0% |
| ! | TTAAGGTTGTCACGGATTAT+AGG | + | chr8.4:33763361-33763380 | None:intergenic | 35.0% |
| ! | TTGTTCCTTTTGTCTCAAGA+AGG | - | chr8.4:33764737-33764756 | MS.gene97933:CDS | 35.0% |
| !!! | AATGTTTTTTCTAGACCAGG+AGG | - | chr8.4:33764523-33764542 | MS.gene97933:intron | 35.0% |
| !!! | GCTAATGTTTTTTCTAGACC+AGG | - | chr8.4:33764520-33764539 | MS.gene97933:intron | 35.0% |
| AACCTAACAGCAACGGATAT+AGG | - | chr8.4:33763379-33763398 | MS.gene97933:CDS | 40.0% | |
| AACCTTAAACTTCACACAGC+TGG | - | chr8.4:33764472-33764491 | MS.gene97933:intron | 40.0% | |
| AATGGGAACTGCTTGTGATT+TGG | - | chr8.4:33763450-33763469 | MS.gene97933:CDS | 40.0% | |
| ACTGTTGTTGGAAGAGCAAA+TGG | - | chr8.4:33763643-33763662 | MS.gene97933:intron | 40.0% | |
| ATTTGCTCTTCCAACAACAG+TGG | + | chr8.4:33763644-33763663 | None:intergenic | 40.0% | |
| CAACCTTAACCTAACAGCAA+CGG | - | chr8.4:33763372-33763391 | MS.gene97933:CDS | 40.0% | |
| CATTCCTGATATGACTCCTA+AGG | + | chr8.4:33765711-33765730 | None:intergenic | 40.0% | |
| CTCACAAGAAGAAAACCAGT+AGG | + | chr8.4:33763553-33763572 | None:intergenic | 40.0% | |
| CTGTTAGGTTAAGGTTGTCA+CGG | + | chr8.4:33763369-33763388 | None:intergenic | 40.0% | |
| CTTCTTGTGAGGTTCTTTAC+TGG | - | chr8.4:33763562-33763581 | MS.gene97933:CDS | 40.0% | |
| TAGAACAGCACAACAACACA+AGG | - | chr8.4:33764944-33764963 | MS.gene97933:CDS | 40.0% | |
| TATGGCTGAATGGAACTCAA+AGG | - | chr8.4:33765934-33765953 | MS.gene97933:CDS | 40.0% | |
| TCAAAGACAGGACAAACTGA+AGG | + | chr8.4:33765137-33765156 | None:intergenic | 40.0% | |
| TCAGATAATAAACCACCTCC+TGG | + | chr8.4:33764541-33764560 | None:intergenic | 40.0% | |
| TGAATGGAACTCAAAGGAGA+GGG | - | chr8.4:33765940-33765959 | MS.gene97933:CDS | 40.0% | |
| TGCAACAAATTCAGGTCCTT+AGG | - | chr8.4:33765692-33765711 | MS.gene97933:CDS | 40.0% | |
| TTCCAGCTGTGTGAAGTTTA+AGG | + | chr8.4:33764477-33764496 | None:intergenic | 40.0% | |
| TTGGAATGAGGGGTAGATTA+TGG | - | chr8.4:33764578-33764597 | MS.gene97933:intron | 40.0% | |
| ! | GCTAAGAGATTTGGAATGAG+GGG | - | chr8.4:33764568-33764587 | MS.gene97933:intron | 40.0% |
| ! | GGAATCATTGCTGCAAGTTT+TGG | - | chr8.4:33764493-33764512 | MS.gene97933:intron | 40.0% |
| ! | GGCTAAGAGATTTGGAATGA+GGG | - | chr8.4:33764567-33764586 | MS.gene97933:intron | 40.0% |
| ! | GTTTTTGTTCAAGCTGCTTG+TGG | - | chr8.4:33764700-33764719 | MS.gene97933:CDS | 40.0% |
| ! | TATCCGTTGCTGTTAGGTTA+AGG | + | chr8.4:33763378-33763397 | None:intergenic | 40.0% |
| ! | TCACGGATTATAGGAACAAG+TGG | + | chr8.4:33763352-33763371 | None:intergenic | 40.0% |
| ! | TGGCTAAGAGATTTGGAATG+AGG | - | chr8.4:33764566-33764585 | MS.gene97933:intron | 40.0% |
| ! | TTCCTATATCCGTTGCTGTT+AGG | + | chr8.4:33763384-33763403 | None:intergenic | 40.0% |
| !!! | CATTGCTGCAAGTTTTGGTT+TGG | - | chr8.4:33764498-33764517 | MS.gene97933:intron | 40.0% |
| !!! | CTACTGGTTTTCTTCTTGTG+AGG | - | chr8.4:33763551-33763570 | MS.gene97933:CDS | 40.0% |
| !!! | TGTGTGATTTTGGGACTTGT+TGG | - | chr8.4:33764637-33764656 | MS.gene97933:CDS | 40.0% |
| AAAAACATGCCACCCCATTG+TGG | + | chr8.4:33765875-33765894 | None:intergenic | 45.0% | |
| AACTCAAAGGAGAGGGAGAA+AGG | - | chr8.4:33765947-33765966 | MS.gene97933:CDS | 45.0% | |
| AATATGGTTTCTCAGGTGGG+TGG | - | chr8.4:33764100-33764119 | MS.gene97933:intron | 45.0% | |
| ACAGGACAAACTGAAGGCAA+GGG | + | chr8.4:33765131-33765150 | None:intergenic | 45.0% | |
| AGGTCCTTAGGAGTCATATC+AGG | - | chr8.4:33765704-33765723 | MS.gene97933:CDS | 45.0% | |
| ATATCAGGAATGACAGGAGG+AGG | - | chr8.4:33765719-33765738 | MS.gene97933:CDS | 45.0% | |
| ATATGGTTTCTCAGGTGGGT+GGG | - | chr8.4:33764101-33764120 | MS.gene97933:intron | 45.0% | |
| CATTTCAACTAGGCCATCTG+AGG | - | chr8.4:33766033-33766052 | MS.gene97933:CDS | 45.0% | |
| CTGAATGGAACTCAAAGGAG+AGG | - | chr8.4:33765939-33765958 | MS.gene97933:CDS | 45.0% | |
| GCAACGGATATAGGAAATGC+TGG | - | chr8.4:33763388-33763407 | MS.gene97933:CDS | 45.0% | |
| GGAAGAGCAAATGGTTTCTC+AGG | - | chr8.4:33763652-33763671 | MS.gene97933:intron | 45.0% | |
| GGAGTCATATCAGGAATGAC+AGG | - | chr8.4:33765713-33765732 | MS.gene97933:CDS | 45.0% | |
| GGGGTAGATTATGGTGTTTG+TGG | - | chr8.4:33764587-33764606 | MS.gene97933:intron | 45.0% | |
| GTCATATCAGGAATGACAGG+AGG | - | chr8.4:33765716-33765735 | MS.gene97933:CDS | 45.0% | |
| TGGATTTGTCAAACGTTGGC+TGG | - | chr8.4:33764607-33764626 | MS.gene97933:CDS | 45.0% | |
| ! | GCTGCTTGTGGAATGACTTT+TGG | - | chr8.4:33764712-33764731 | MS.gene97933:CDS | 45.0% |
| !! | GGAACTGCTTGTGATTTGGT+TGG | - | chr8.4:33763454-33763473 | MS.gene97933:CDS | 45.0% |
| !!! | CAATGGGGTGGCATGTTTTT+TGG | - | chr8.4:33765875-33765894 | MS.gene97933:CDS | 45.0% |
| !!! | GTTTTTTCTAGACCAGGAGG+TGG | - | chr8.4:33764526-33764545 | MS.gene97933:intron | 45.0% |
| !!! | TGGGATCGAATTTTGACTCG+AGG | + | chr8.4:33764864-33764883 | None:intergenic | 45.0% |
| !!! | AAATTTGTTTATATTAAAAT+TGG | + | chr8.4:33763977-33763996 | None:intergenic | 5.0% |
| AAAGCAGCAGAAGCAAGACG+AGG | + | chr8.4:33763481-33763500 | None:intergenic | 50.0% | |
| AGGGAGAAAGGCTCTCATCA+TGG | - | chr8.4:33765959-33765978 | MS.gene97933:CDS | 50.0% | |
| GACAGGACAAACTGAAGGCA+AGG | + | chr8.4:33765132-33765151 | None:intergenic | 50.0% | |
| GGTGGTGTAACATCCTCAGA+TGG | + | chr8.4:33766049-33766068 | None:intergenic | 50.0% | |
| TATGGTTTCTCAGGTGGGTG+GGG | - | chr8.4:33764102-33764121 | MS.gene97933:intron | 50.0% | |
| !! | GCTGGTGTTGCATCTGTTTC+TGG | - | chr8.4:33763406-33763425 | MS.gene97933:CDS | 50.0% |
| ACAGGAGGAGGAGGAAACGT+TGG | - | chr8.4:33765731-33765750 | MS.gene97933:CDS | 55.0% | |
| TCAGGAATGACAGGAGGAGG+AGG | - | chr8.4:33765722-33765741 | MS.gene97933:CDS | 55.0% | |
| ! | GTTGTGTTGCTCCTCCACCA+AGG | + | chr8.4:33764131-33764150 | None:intergenic | 55.0% |
| TCAGGTGGGTGGGGTAACCT+TGG | - | chr8.4:33764111-33764130 | MS.gene97933:intron | 60.0% | |
| GGGTGGGGTAACCTTGGTGG+AGG | - | chr8.4:33764117-33764136 | MS.gene97933:intron | 65.0% | |
| GGTGGGTGGGGTAACCTTGG+TGG | - | chr8.4:33764114-33764133 | MS.gene97933:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 33763283 | 33766081 | 33763283 | ID=MS.gene97933 |
| chr8.4 | mRNA | 33763283 | 33766081 | 33763283 | ID=MS.gene97933.t1;Parent=MS.gene97933 |
| chr8.4 | exon | 33765691 | 33766081 | 33765691 | ID=MS.gene97933.t1.exon1;Parent=MS.gene97933.t1 |
| chr8.4 | CDS | 33765691 | 33766081 | 33765691 | ID=cds.MS.gene97933.t1;Parent=MS.gene97933.t1 |
| chr8.4 | exon | 33765043 | 33765249 | 33765043 | ID=MS.gene97933.t1.exon2;Parent=MS.gene97933.t1 |
| chr8.4 | CDS | 33765043 | 33765249 | 33765043 | ID=cds.MS.gene97933.t1;Parent=MS.gene97933.t1 |
| chr8.4 | exon | 33764606 | 33764981 | 33764606 | ID=MS.gene97933.t1.exon3;Parent=MS.gene97933.t1 |
| chr8.4 | CDS | 33764606 | 33764981 | 33764606 | ID=cds.MS.gene97933.t1;Parent=MS.gene97933.t1 |
| chr8.4 | exon | 33763283 | 33763658 | 33763283 | ID=MS.gene97933.t1.exon4;Parent=MS.gene97933.t1 |
| chr8.4 | CDS | 33763283 | 33763658 | 33763283 | ID=cds.MS.gene97933.t1;Parent=MS.gene97933.t1 |
| Gene Sequence |
| Protein sequence |
