Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056444.t1 | XP_013446173.1 | 98.5 | 469 | 7 | 0 | 1 | 469 | 42 | 510 | 2.40E-258 | 901 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056444.t1 | Q9LPV5 | 75.6 | 450 | 110 | 0 | 1 | 450 | 44 | 493 | 7.6e-197 | 688.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056444.t1 | A0A072U314 | 98.5 | 469 | 7 | 0 | 1 | 469 | 42 | 510 | 1.7e-258 | 901.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049711 | MS.gene056444 | 0.802702 | 4.95E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene056444 | 0.800441 | 1.44E-48 | -1.69E-46 |
| MS.gene051744 | MS.gene056444 | 0.803323 | 3.68E-49 | -1.69E-46 |
| MS.gene052037 | MS.gene056444 | 0.806401 | 8.38E-50 | -1.69E-46 |
| MS.gene056444 | MS.gene05686 | 0.822384 | 2.44E-53 | -1.69E-46 |
| MS.gene056444 | MS.gene059634 | 0.807865 | 4.10E-50 | -1.69E-46 |
| MS.gene056444 | MS.gene063691 | 0.809353 | 1.97E-50 | -1.69E-46 |
| MS.gene056444 | MS.gene065757 | 0.820577 | 6.37E-53 | -1.69E-46 |
| MS.gene056444 | MS.gene066335 | 0.821396 | 4.13E-53 | -1.69E-46 |
| MS.gene056444 | MS.gene067952 | 0.888369 | 6.28E-73 | -1.69E-46 |
| MS.gene056444 | MS.gene070275 | 0.804029 | 2.63E-49 | -1.69E-46 |
| MS.gene056444 | MS.gene070301 | 0.826098 | 3.27E-54 | -1.69E-46 |
| MS.gene056444 | MS.gene073428 | 0.845557 | 3.77E-59 | -1.69E-46 |
| MS.gene056444 | MS.gene25879 | 0.820784 | 5.71E-53 | -1.69E-46 |
| MS.gene056444 | MS.gene28461 | 0.808948 | 2.41E-50 | -1.69E-46 |
| MS.gene056444 | MS.gene29631 | 0.805773 | 1.14E-49 | -1.69E-46 |
| MS.gene056444 | MS.gene35324 | 0.817167 | 3.79E-52 | -1.69E-46 |
| MS.gene056444 | MS.gene36151 | 0.860638 | 1.80E-63 | -1.69E-46 |
| MS.gene056444 | MS.gene38207 | 0.808317 | 3.29E-50 | -1.69E-46 |
| MS.gene056444 | MS.gene40121 | 0.803667 | 3.13E-49 | -1.69E-46 |
| MS.gene056444 | MS.gene43969 | 0.802498 | 5.45E-49 | -1.69E-46 |
| MS.gene056444 | MS.gene43972 | 0.823779 | 1.15E-53 | -1.69E-46 |
| MS.gene056444 | MS.gene48017 | 0.801732 | 7.84E-49 | -1.69E-46 |
| MS.gene056444 | MS.gene52609 | 0.802139 | 6.47E-49 | -1.69E-46 |
| MS.gene056444 | MS.gene52616 | 0.801923 | 7.16E-49 | -1.69E-46 |
| MS.gene056444 | MS.gene56217 | 0.802385 | 5.75E-49 | -1.69E-46 |
| MS.gene056444 | MS.gene56727 | 0.804744 | 1.86E-49 | -1.69E-46 |
| MS.gene056444 | MS.gene58653 | 0.843457 | 1.39E-58 | -1.69E-46 |
| MS.gene056444 | MS.gene67631 | 0.800849 | 1.19E-48 | -1.69E-46 |
| MS.gene056444 | MS.gene76244 | 0.812471 | 4.17E-51 | -1.69E-46 |
| MS.gene056444 | MS.gene79568 | 0.828762 | 7.51E-55 | -1.69E-46 |
| MS.gene056444 | MS.gene84454 | 0.802551 | 5.32E-49 | -1.69E-46 |
| MS.gene056444 | MS.gene90248 | 0.818787 | 1.63E-52 | -1.69E-46 |
| MS.gene056444 | MS.gene93222 | 0.802917 | 4.47E-49 | -1.69E-46 |
| MS.gene056444 | MS.gene97933 | 0.89698 | 2.19E-76 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene056444 | MS.gene08732 | PPI |
| MS.gene007704 | MS.gene056444 | PPI |
| MS.gene056444 | MS.gene050095 | PPI |
| MS.gene056444 | MS.gene007705 | PPI |
| MS.gene056444 | MS.gene08733 | PPI |
| MS.gene056444 | MS.gene050096 | PPI |
| MS.gene08666 | MS.gene056444 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056444.t1 | MTR_8g069775 | 98.507 | 469 | 7 | 0 | 1 | 469 | 42 | 510 | 0.0 | 936 |
| MS.gene056444.t1 | MTR_4g057890 | 61.325 | 468 | 178 | 2 | 1 | 468 | 62 | 526 | 0.0 | 607 |
| MS.gene056444.t1 | MTR_4g057865 | 61.111 | 468 | 179 | 2 | 1 | 468 | 62 | 526 | 0.0 | 606 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056444.t1 | AT1G12940 | 75.556 | 450 | 110 | 0 | 1 | 450 | 44 | 493 | 0.0 | 715 |
| MS.gene056444.t1 | AT5G60770 | 58.686 | 472 | 186 | 4 | 1 | 469 | 62 | 527 | 0.0 | 585 |
| MS.gene056444.t1 | AT1G08090 | 57.749 | 471 | 195 | 2 | 1 | 469 | 62 | 530 | 0.0 | 577 |
| MS.gene056444.t1 | AT1G08100 | 58.315 | 451 | 187 | 1 | 1 | 450 | 60 | 510 | 0.0 | 559 |
| MS.gene056444.t1 | AT5G60780 | 57.325 | 471 | 199 | 1 | 1 | 469 | 69 | 539 | 0.0 | 550 |
| MS.gene056444.t1 | AT3G45060 | 57.749 | 471 | 197 | 1 | 1 | 469 | 72 | 542 | 0.0 | 550 |
| MS.gene056444.t1 | AT5G14570 | 50.989 | 455 | 201 | 3 | 3 | 440 | 41 | 490 | 6.16e-159 | 459 |
Find 83 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGGTGTTGCTTCTGTTTC+TGG | 0.017344 | 8.2:-33279767 | MS.gene056444:CDS |
| TTGAACCAAAATCTTGTATA+AGG | 0.172084 | 8.2:+33279032 | None:intergenic |
| TTCCAGCAGTGTGAAGTTTA+AGG | 0.193334 | 8.2:+33278732 | None:intergenic |
| TGGTTTATTATCTGATTTAA+TGG | 0.218179 | 8.2:-33278660 | MS.gene056444:CDS |
| CTTCTTGTGAGGTTCTTTAC+TGG | 0.225051 | 8.2:-33279611 | MS.gene056444:CDS |
| GCTGCTTGTGGAATGACTTT+TGG | 0.252766 | 8.2:-33278494 | MS.gene056444:CDS |
| TTGGAATGAGGGGTAGATTA+TGG | 0.258780 | 8.2:-33278628 | MS.gene056444:CDS |
| GATTTAATGGCTAAGAGATT+TGG | 0.279825 | 8.2:-33278647 | MS.gene056444:CDS |
| TTGACTTATGGTTATTGTTT+TGG | 0.287818 | 8.2:-33278809 | MS.gene056444:CDS |
| CACAGAAGAAGATTACTATT+TGG | 0.296738 | 8.2:-33277161 | MS.gene056444:CDS |
| GGAATCATTGCTGCAAGTTT+TGG | 0.302049 | 8.2:-33278713 | MS.gene056444:CDS |
| GGTGGGTGGGGTAACCTTGG+TGG | 0.319262 | 8.2:-33279091 | MS.gene056444:CDS |
| GGAAAATATAATAAGAATAA+TGG | 0.343787 | 8.2:+33277226 | None:intergenic |
| TATCATAGTTTAAAGAAATC+AGG | 0.358479 | 8.2:-33278905 | MS.gene056444:CDS |
| TTAAGGTTGTCACGGATTAT+AGG | 0.361381 | 8.2:+33279815 | None:intergenic |
| AGAAAGAGGAATAACTCTAA+TGG | 0.367970 | 8.2:-33277275 | MS.gene056444:CDS |
| AATGGGAACTGCTTGTGATT+TGG | 0.383228 | 8.2:-33279723 | MS.gene056444:CDS |
| AACCTTAAACTTCACACTGC+TGG | 0.383716 | 8.2:-33278734 | MS.gene056444:CDS |
| ATCCTTTGAAGAAAATTAGT+TGG | 0.392329 | 8.2:+33277311 | None:intergenic |
| AACCTAACAGCGACGGATAT+AGG | 0.400320 | 8.2:-33279794 | MS.gene056444:CDS |
| TTCCTATATCCGTCGCTGTT+AGG | 0.403164 | 8.2:+33279792 | None:intergenic |
| TGAACCAAAATCTTGTATAA+GGG | 0.403906 | 8.2:+33279033 | None:intergenic |
| GAAAGAGGAATAACTCTAAT+GGG | 0.408051 | 8.2:-33277274 | MS.gene056444:CDS |
| CATGGTGTGTTAAATTATAG+AGG | 0.409317 | 8.2:-33278845 | MS.gene056444:CDS |
| AAGATTACTATTTGGCTGAA+TGG | 0.421212 | 8.2:-33277153 | MS.gene056444:CDS |
| TCTATTATCAATTCTCCTAC+TGG | 0.423158 | 8.2:-33279638 | MS.gene056444:CDS |
| TCAGGTGGGTGGGGTAACCT+TGG | 0.436260 | 8.2:-33279094 | MS.gene056444:intron |
| ACTGTTGTTGGAAGAGCAAA+TGG | 0.438974 | 8.2:-33279530 | MS.gene056444:CDS |
| GGAAGAGCAAATGGTTTCTC+AGG | 0.441053 | 8.2:-33279521 | MS.gene056444:intron |
| TGCTAGCATTTCATCTATCA+TGG | 0.442197 | 8.2:-33279889 | MS.gene056444:CDS |
| GGGTGGGGTAACCTTGGTGG+AGG | 0.446755 | 8.2:-33279088 | MS.gene056444:CDS |
| TATCCGTCGCTGTTAGGTTA+AGG | 0.446788 | 8.2:+33279798 | None:intergenic |
| TCCTTTGAAGAAAATTAGTT+GGG | 0.459131 | 8.2:+33277312 | None:intergenic |
| AGGTCCTTAGGAGTCATATC+AGG | 0.460197 | 8.2:-33277373 | MS.gene056444:CDS |
| GGCTAAGAGATTTGGAATGA+GGG | 0.467670 | 8.2:-33278639 | MS.gene056444:CDS |
| AAACTATGATAATTACCATC+TGG | 0.467928 | 8.2:+33278917 | None:intergenic |
| TGGATTTGTCAAACGTTGGC+TGG | 0.472815 | 8.2:-33278599 | MS.gene056444:CDS |
| GGGGTAGATTATGGTGTTTG+TGG | 0.475044 | 8.2:-33278619 | MS.gene056444:CDS |
| TATGGTTTCTCAGGTGGGTG+GGG | 0.476787 | 8.2:-33279103 | MS.gene056444:intron |
| TGGCTAAGAGATTTGGAATG+AGG | 0.480994 | 8.2:-33278640 | MS.gene056444:CDS |
| TGCAACAAATTCAGGTCCTT+AGG | 0.486150 | 8.2:-33277385 | MS.gene056444:intron |
| ACATACCTTCTTGAGACAAA+AGG | 0.496721 | 8.2:+33278464 | None:intergenic |
| ATATGGTTTCTCAGGTGGGT+GGG | 0.498713 | 8.2:-33279104 | MS.gene056444:intron |
| TTCAGCTATGATATTGTCAA+TGG | 0.501509 | 8.2:+33278775 | None:intergenic |
| GATAATAGTAGAAGTGAAAG+AGG | 0.507879 | 8.2:-33277079 | MS.gene056444:CDS |
| TCAGGAATGACAGGAGGAGG+AGG | 0.515611 | 8.2:-33277355 | MS.gene056444:CDS |
| GTTCAACAAAATTCACTGCA+TGG | 0.520686 | 8.2:-33279015 | MS.gene056444:CDS |
| AACTCAAAGGAGAGGGAGAA+AGG | 0.520853 | 8.2:-33277130 | MS.gene056444:CDS |
| TAAGGTGCATATTATGATCA+TGG | 0.523894 | 8.2:+33277249 | None:intergenic |
| CATTCCTGATATGACTCCTA+AGG | 0.529469 | 8.2:+33277369 | None:intergenic |
| TCAGATAATAAACCACCTCC+TGG | 0.536893 | 8.2:+33278668 | None:intergenic |
| CATTTCAACTAGGCCTTCTG+AGG | 0.538947 | 8.2:-33277044 | MS.gene056444:CDS |
| CTGTTAGGTTAAGGTTGTCA+CGG | 0.539886 | 8.2:+33279807 | None:intergenic |
| AGGGAGAAAGGCTCTCATCA+TGG | 0.540999 | 8.2:-33277118 | MS.gene056444:CDS |
| GGAGTCATATCAGGAATGAC+AGG | 0.542118 | 8.2:-33277364 | MS.gene056444:CDS |
| GTGTGTTAAATTATAGAGGG+TGG | 0.543363 | 8.2:-33278841 | MS.gene056444:CDS |
| TTTGGTCAAGATTTACCAGA+TGG | 0.543573 | 8.2:-33278932 | MS.gene056444:CDS |
| CTGAATGGAACTCAAAGGAG+AGG | 0.547602 | 8.2:-33277138 | MS.gene056444:CDS |
| GGAACTGCTTGTGATTTGGT+TGG | 0.550581 | 8.2:-33279719 | MS.gene056444:CDS |
| GCGACGGATATAGGAAATGC+TGG | 0.561660 | 8.2:-33279785 | MS.gene056444:CDS |
| AATATGGTTTCTCAGGTGGG+TGG | 0.562582 | 8.2:-33279105 | MS.gene056444:intron |
| ATATCAGGAATGACAGGAGG+AGG | 0.569761 | 8.2:-33277358 | MS.gene056444:CDS |
| GAAAATTCAACATTTCAACT+AGG | 0.570170 | 8.2:-33277054 | MS.gene056444:CDS |
| ATATAATAAGAATAATGGTA+AGG | 0.576979 | 8.2:+33277231 | None:intergenic |
| ATAGAAGTGAAGTAAACAGC+AGG | 0.585810 | 8.2:+33279656 | None:intergenic |
| CTCTATAATTTAACACACCA+TGG | 0.586174 | 8.2:+33278846 | None:intergenic |
| ATTTCAAAAGTAATTTACCA+TGG | 0.589099 | 8.2:-33278863 | MS.gene056444:CDS |
| TTTGTGGATTTGTCAAACGT+TGG | 0.593191 | 8.2:-33278603 | MS.gene056444:CDS |
| GCTAAGAGATTTGGAATGAG+GGG | 0.599275 | 8.2:-33278638 | MS.gene056444:CDS |
| AATAGTAGAAGTGAAAGAGG+TGG | 0.601395 | 8.2:-33277076 | MS.gene056444:CDS |
| TGAATGGAACTCAAAGGAGA+GGG | 0.609630 | 8.2:-33277137 | MS.gene056444:CDS |
| ACAGGAGGAGGAGGGAACGT+AGG | 0.617181 | 8.2:-33277346 | MS.gene056444:CDS |
| TTTGGCTGAATGGAACTCAA+AGG | 0.622357 | 8.2:-33277143 | MS.gene056444:CDS |
| ATGGTGTGTTAAATTATAGA+GGG | 0.629408 | 8.2:-33278844 | MS.gene056444:CDS |
| CAGGAATGACAGGAGGAGGA+GGG | 0.629488 | 8.2:-33277354 | MS.gene056444:CDS |
| TGTATAAGGGAAAATACAAG+TGG | 0.636963 | 8.2:+33279046 | None:intergenic |
| TCACGGATTATAGGAACAAG+TGG | 0.646242 | 8.2:+33279824 | None:intergenic |
| GTCATATCAGGAATGACAGG+AGG | 0.646603 | 8.2:-33277361 | MS.gene056444:CDS |
| GGTGGTGTAACATCCTCAGA+AGG | 0.651845 | 8.2:+33277031 | None:intergenic |
| CAACCTTAACCTAACAGCGA+CGG | 0.654820 | 8.2:-33279801 | MS.gene056444:CDS |
| AAAGCAGCAGAAGCAAGACG+AGG | 0.678632 | 8.2:+33279695 | None:intergenic |
| GTTGTGTTGCTCCTCCACCA+AGG | 0.696287 | 8.2:+33279077 | None:intergenic |
| CTCACAAGAAGAAAACCAGT+AGG | 0.723236 | 8.2:+33279623 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCAATATGAATAAATT+TGG | + | chr8.2:33277588-33277607 | None:intergenic | 10.0% |
| !! | TAAAAATTAATATATTTGCA+AGG | + | chr8.2:33277532-33277551 | None:intergenic | 10.0% |
| !!! | TATTTATTTTGCTTAAAATA+TGG | - | chr8.2:33277787-33277806 | MS.gene056444:intron | 10.0% |
| !! | ATATAATAAGAATAATGGTA+AGG | + | chr8.2:33279680-33279699 | None:intergenic | 15.0% |
| !! | GGAAAATATAATAAGAATAA+TGG | + | chr8.2:33279685-33279704 | None:intergenic | 15.0% |
| !!! | AAACTTTTAACTTTTTTTTC+AGG | - | chr8.2:33277476-33277495 | MS.gene056444:intron | 15.0% |
| !!! | AATATAAACAAATTTTACTG+AGG | - | chr8.2:33277686-33277705 | MS.gene056444:intron | 15.0% |
| !!! | GCATTTTCAATTTTAATATT+TGG | - | chr8.2:33277958-33277977 | MS.gene056444:intron | 15.0% |
| !!! | TTTAAATATGGTTTTTCTTT+TGG | - | chr8.2:33277499-33277518 | MS.gene056444:intron | 15.0% |
| !!! | TTTTTTTTCAGGTTTAAATA+TGG | - | chr8.2:33277487-33277506 | MS.gene056444:intron | 15.0% |
| !! | AAAATCGTTCAAAATTGTTT+AGG | - | chr8.2:33279314-33279333 | MS.gene056444:intron | 20.0% |
| !! | AATAAAACTCATAACACTTA+AGG | - | chr8.2:33278592-33278611 | MS.gene056444:CDS | 20.0% |
| !! | ATGATAGTTTCTAACAAATT+AGG | + | chr8.2:33279207-33279226 | None:intergenic | 20.0% |
| !! | ATTTCAAAAGTAATTTACCA+TGG | - | chr8.2:33278045-33278064 | MS.gene056444:intron | 20.0% |
| !! | TAAAAGAACCACAAATTTAA+TGG | - | chr8.2:33279181-33279200 | MS.gene056444:intron | 20.0% |
| !! | TATCATAGTTTAAAGAAATC+AGG | - | chr8.2:33278003-33278022 | MS.gene056444:intron | 20.0% |
| !! | TCCAAATTTCTCTTATAAAT+AGG | + | chr8.2:33279356-33279375 | None:intergenic | 20.0% |
| !! | TCCTATTTATAAGAGAAATT+TGG | - | chr8.2:33279352-33279371 | MS.gene056444:intron | 20.0% |
| !! | TGGTTTATTATCTGATTTAA+TGG | - | chr8.2:33278248-33278267 | MS.gene056444:intron | 20.0% |
| !!! | CCAAAATTTCTCTTTTAAAT+AGG | - | chr8.2:33279435-33279454 | MS.gene056444:intron | 20.0% |
| !!! | CCTATTTAAAAGAGAAATTT+TGG | + | chr8.2:33279438-33279457 | None:intergenic | 20.0% |
| !!! | CTTATTATATTTTCCACAAT+GGG | - | chr8.2:33279690-33279709 | MS.gene056444:CDS | 20.0% |
| !!! | GTATGATATTGAATAACTTT+TGG | - | chr8.2:33278693-33278712 | MS.gene056444:CDS | 20.0% |
| !!! | TCTTATTATATTTTCCACAA+TGG | - | chr8.2:33279689-33279708 | MS.gene056444:CDS | 20.0% |
| !!! | TGTGGTTCTTTTATTTATTA+AGG | + | chr8.2:33279174-33279193 | None:intergenic | 20.0% |
| !!! | TTATGAGTTTTATTGAATCT+GGG | + | chr8.2:33278586-33278605 | None:intergenic | 20.0% |
| !!! | TTATTATATTTTCCACAATG+GGG | - | chr8.2:33279691-33279710 | MS.gene056444:CDS | 20.0% |
| ! | AAACTATGATAATTACCATC+TGG | + | chr8.2:33277994-33278013 | None:intergenic | 25.0% |
| ! | AAATTAGGCCATTAAATTTG+TGG | + | chr8.2:33279192-33279211 | None:intergenic | 25.0% |
| ! | AACAAGACTTATATGATCAA+AGG | + | chr8.2:33279009-33279028 | None:intergenic | 25.0% |
| ! | ATGGTGTGTTAAATTATAGA+GGG | - | chr8.2:33278064-33278083 | MS.gene056444:intron | 25.0% |
| ! | ATTTCTCTTATAAATAGGAC+CGG | + | chr8.2:33279351-33279370 | None:intergenic | 25.0% |
| ! | GAAAATTCAACATTTCAACT+AGG | - | chr8.2:33279854-33279873 | MS.gene056444:CDS | 25.0% |
| ! | TAAACTAACTATTGATCGAA+TGG | + | chr8.2:33279048-33279067 | None:intergenic | 25.0% |
| ! | TCAACAAAAGTGAATGTATT+TGG | - | chr8.2:33279376-33279395 | MS.gene056444:intron | 25.0% |
| ! | TGAAAGAAAAACTTGTAACA+CGG | - | chr8.2:33279289-33279308 | MS.gene056444:intron | 25.0% |
| ! | TGAACCAAAATCTTGTATAA+GGG | + | chr8.2:33277878-33277897 | None:intergenic | 25.0% |
| ! | TGTCCACAAAAAATTGTATA+AGG | + | chr8.2:33278719-33278738 | None:intergenic | 25.0% |
| ! | TTAACATATGCAACAAATTC+AGG | - | chr8.2:33279515-33279534 | MS.gene056444:intron | 25.0% |
| ! | TTGAACCAAAATCTTGTATA+AGG | + | chr8.2:33277879-33277898 | None:intergenic | 25.0% |
| !! | ATCCTTTGAAGAAAATTAGT+TGG | + | chr8.2:33279600-33279619 | None:intergenic | 25.0% |
| !! | ATTTCTCTTTTAAATAGGAC+CGG | - | chr8.2:33279440-33279459 | MS.gene056444:intron | 25.0% |
| !! | TCAAGATTTTCAAAAGAAAG+AGG | - | chr8.2:33279619-33279638 | MS.gene056444:CDS | 25.0% |
| !! | TCCTTTGAAGAAAATTAGTT+GGG | + | chr8.2:33279599-33279618 | None:intergenic | 25.0% |
| !! | TTGACTTATGGTTATTGTTT+TGG | - | chr8.2:33278099-33278118 | MS.gene056444:intron | 25.0% |
| !! | TTTTCCCTTATACAAGATTT+TGG | - | chr8.2:33277871-33277890 | MS.gene056444:intron | 25.0% |
| !!! | AACTAACTTGTTGAACTTAA+GGG | + | chr8.2:33278940-33278959 | None:intergenic | 25.0% |
| !!! | CTTATCAATTTTTGTTATCG+TGG | + | chr8.2:33278518-33278537 | None:intergenic | 25.0% |
| !!! | GGTTCTTTTATTTATTAAGG+TGG | + | chr8.2:33279171-33279190 | None:intergenic | 25.0% |
| !!! | GTTATGAGTTTTATTGAATC+TGG | + | chr8.2:33278587-33278606 | None:intergenic | 25.0% |
| !!! | TTTGATTTGCTGAAAAATGA+AGG | + | chr8.2:33278913-33278932 | None:intergenic | 25.0% |
| AAATAGAACAACACAACACA+AGG | - | chr8.2:33278643-33278662 | MS.gene056444:CDS | 30.0% | |
| AAGATTACTATTTGGCTGAA+TGG | - | chr8.2:33279755-33279774 | MS.gene056444:CDS | 30.0% | |
| AGAAAGAGGAATAACTCTAA+TGG | - | chr8.2:33279633-33279652 | MS.gene056444:CDS | 30.0% | |
| CACAGAAGAAGATTACTATT+TGG | - | chr8.2:33279747-33279766 | MS.gene056444:CDS | 30.0% | |
| CATGGTGTGTTAAATTATAG+AGG | - | chr8.2:33278063-33278082 | MS.gene056444:intron | 30.0% | |
| CTCTATAATTTAACACACCA+TGG | + | chr8.2:33278065-33278084 | None:intergenic | 30.0% | |
| GAAAGAGGAATAACTCTAAT+GGG | - | chr8.2:33279634-33279653 | MS.gene056444:CDS | 30.0% | |
| GATAATAGTAGAAGTGAAAG+AGG | - | chr8.2:33279829-33279848 | MS.gene056444:CDS | 30.0% | |
| GATTTAATGGCTAAGAGATT+TGG | - | chr8.2:33278261-33278280 | MS.gene056444:intron | 30.0% | |
| TAAAAAGTTGTGATGTGGTT+TGG | - | chr8.2:33278778-33278797 | MS.gene056444:CDS | 30.0% | |
| TAAAATATGGTTTCTCAGGT+GGG | - | chr8.2:33277800-33277819 | MS.gene056444:intron | 30.0% | |
| TAAGGTGCATATTATGATCA+TGG | + | chr8.2:33279662-33279681 | None:intergenic | 30.0% | |
| TCAAAGATTGCAAAAATGCT+GGG | + | chr8.2:33277936-33277955 | None:intergenic | 30.0% | |
| TCATTCTTATGAGACTTGAT+TGG | - | chr8.2:33279243-33279262 | MS.gene056444:intron | 30.0% | |
| TCTATTATCAATTCTCCTAC+TGG | - | chr8.2:33277270-33277289 | MS.gene056444:CDS | 30.0% | |
| TGAAAAATGAAGGATAGGAT+TGG | + | chr8.2:33278903-33278922 | None:intergenic | 30.0% | |
| TGCTTAAAATATGGTTTCTC+AGG | - | chr8.2:33277796-33277815 | MS.gene056444:intron | 30.0% | |
| TGTATAAGGGAAAATACAAG+TGG | + | chr8.2:33277865-33277884 | None:intergenic | 30.0% | |
| TGTGATAAAAAGTTGTGATG+TGG | - | chr8.2:33278773-33278792 | MS.gene056444:CDS | 30.0% | |
| TTAAAATATGGTTTCTCAGG+TGG | - | chr8.2:33277799-33277818 | MS.gene056444:intron | 30.0% | |
| TTCAGCTATGATATTGTCAA+TGG | + | chr8.2:33278136-33278155 | None:intergenic | 30.0% | |
| TTTGCTGAAAAATGAAGGAT+AGG | + | chr8.2:33278908-33278927 | None:intergenic | 30.0% | |
| ! | ACCCAACTAATTTTCTTCAA+AGG | - | chr8.2:33279595-33279614 | MS.gene056444:CDS | 30.0% |
| ! | ATGTTTTCTACTACTGTTGT+TGG | - | chr8.2:33277366-33277385 | MS.gene056444:CDS | 30.0% |
| ! | GTTTTTGCAAGAATTGCAAT+GGG | - | chr8.2:33277168-33277187 | MS.gene056444:CDS | 30.0% |
| !! | CAACTAACTTGTTGAACTTA+AGG | + | chr8.2:33278941-33278960 | None:intergenic | 30.0% |
| !! | TGTTTTTGCAAGAATTGCAA+TGG | - | chr8.2:33277167-33277186 | MS.gene056444:CDS | 30.0% |
| !!! | CTTTTGTTTCTACTCAGTTT+TGG | - | chr8.2:33277334-33277353 | MS.gene056444:CDS | 30.0% |
| !!! | GGTGTTTTTTGTGTGATTTT+GGG | - | chr8.2:33278330-33278349 | MS.gene056444:intron | 30.0% |
| !!! | TGGATTTTAGCTTTGACTTA+TGG | - | chr8.2:33278087-33278106 | MS.gene056444:intron | 30.0% |
| !!! | TGGCCTTATACAATTTTTTG+TGG | - | chr8.2:33278713-33278732 | MS.gene056444:CDS | 30.0% |
| !!! | TGGTGTTTTTTGTGTGATTT+TGG | - | chr8.2:33278329-33278348 | MS.gene056444:intron | 30.0% |
| !!! | TTATGGTTATTGTTTTGGTG+TGG | - | chr8.2:33278104-33278123 | MS.gene056444:intron | 30.0% |
| AATAGTAGAAGTGAAAGAGG+TGG | - | chr8.2:33279832-33279851 | MS.gene056444:CDS | 35.0% | |
| ACATACCTTCTTGAGACAAA+AGG | + | chr8.2:33278447-33278466 | None:intergenic | 35.0% | |
| AGTGCTCATTACATTGTCAA+TGG | - | chr8.2:33279123-33279142 | MS.gene056444:intron | 35.0% | |
| ATAGAAGTGAAGTAAACAGC+AGG | + | chr8.2:33277255-33277274 | None:intergenic | 35.0% | |
| ATGTTATGTTATACTCCCTC+CGG | + | chr8.2:33279462-33279481 | None:intergenic | 35.0% | |
| GTCAAAGATTGCAAAAATGC+TGG | + | chr8.2:33277937-33277956 | None:intergenic | 35.0% | |
| GTGTGTTAAATTATAGAGGG+TGG | - | chr8.2:33278067-33278086 | MS.gene056444:intron | 35.0% | |
| GTTCAACAAAATTCACTGCA+TGG | - | chr8.2:33277893-33277912 | MS.gene056444:intron | 35.0% | |
| TCAAAGACAAGACAAACTGA+AGG | + | chr8.2:33278841-33278860 | None:intergenic | 35.0% | |
| TCATTTCTCAAAGACCAACT+AGG | + | chr8.2:33279272-33279291 | None:intergenic | 35.0% | |
| TGCTAGCATTTCATCTATCA+TGG | - | chr8.2:33277019-33277038 | MS.gene056444:CDS | 35.0% | |
| TTTGGTCAAGATTTACCAGA+TGG | - | chr8.2:33277976-33277995 | MS.gene056444:intron | 35.0% | |
| TTTGTGGATTTGTCAAACGT+TGG | - | chr8.2:33278305-33278324 | MS.gene056444:intron | 35.0% | |
| ! | GGTGGTTAATCTCATTTTCA+AGG | + | chr8.2:33279153-33279172 | None:intergenic | 35.0% |
| ! | TCTGTGACTTTTGTAGATGA+TGG | + | chr8.2:33279733-33279752 | None:intergenic | 35.0% |
| ! | TTAAGGTTGTCACGGATTAT+AGG | + | chr8.2:33277096-33277115 | None:intergenic | 35.0% |
| ! | TTATATTTTCCACAATGGGG+TGG | - | chr8.2:33279694-33279713 | MS.gene056444:CDS | 35.0% |
| ! | TTGTTCCTTTTGTCTCAAGA+AGG | - | chr8.2:33278439-33278458 | MS.gene056444:intron | 35.0% |
| !!! | AATGTTTTTTCTAGACCAGG+AGG | - | chr8.2:33278225-33278244 | MS.gene056444:intron | 35.0% |
| !!! | GCTAATGTTTTTTCTAGACC+AGG | - | chr8.2:33278222-33278241 | MS.gene056444:intron | 35.0% |
| AACCTTAAACTTCACACTGC+TGG | - | chr8.2:33278174-33278193 | MS.gene056444:intron | 40.0% | |
| AATGGGAACTGCTTGTGATT+TGG | - | chr8.2:33277185-33277204 | MS.gene056444:CDS | 40.0% | |
| ACAAGACAAACTGAAGGCAA+GGG | + | chr8.2:33278835-33278854 | None:intergenic | 40.0% | |
| ACTGTTGTTGGAAGAGCAAA+TGG | - | chr8.2:33277378-33277397 | MS.gene056444:intron | 40.0% | |
| CATTCCTGATATGACTCCTA+AGG | + | chr8.2:33279542-33279561 | None:intergenic | 40.0% | |
| CTCACAAGAAGAAAACCAGT+AGG | + | chr8.2:33277288-33277307 | None:intergenic | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | + | chr8.2:33279347-33279366 | None:intergenic | 40.0% | |
| CTGTTAGGTTAAGGTTGTCA+CGG | + | chr8.2:33277104-33277123 | None:intergenic | 40.0% | |
| CTTCTTGTGAGGTTCTTTAC+TGG | - | chr8.2:33277297-33277316 | MS.gene056444:CDS | 40.0% | |
| TCAGATAATAAACCACCTCC+TGG | + | chr8.2:33278243-33278262 | None:intergenic | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | + | chr8.2:33279348-33279367 | None:intergenic | 40.0% | |
| TGAATGGAACTCAAAGGAGA+GGG | - | chr8.2:33279771-33279790 | MS.gene056444:CDS | 40.0% | |
| TGCAACAAATTCAGGTCCTT+AGG | - | chr8.2:33279523-33279542 | MS.gene056444:CDS | 40.0% | |
| TTCCAGCAGTGTGAAGTTTA+AGG | + | chr8.2:33278179-33278198 | None:intergenic | 40.0% | |
| TTGGAATGAGGGGTAGATTA+TGG | - | chr8.2:33278280-33278299 | MS.gene056444:intron | 40.0% | |
| TTTGGCTGAATGGAACTCAA+AGG | - | chr8.2:33279765-33279784 | MS.gene056444:CDS | 40.0% | |
| ! | CTCTTTTAAATAGGACCGGA+GGG | - | chr8.2:33279444-33279463 | MS.gene056444:intron | 40.0% |
| ! | GCTAAGAGATTTGGAATGAG+GGG | - | chr8.2:33278270-33278289 | MS.gene056444:intron | 40.0% |
| ! | GGAATCATTGCTGCAAGTTT+TGG | - | chr8.2:33278195-33278214 | MS.gene056444:intron | 40.0% |
| ! | GGCTAAGAGATTTGGAATGA+GGG | - | chr8.2:33278269-33278288 | MS.gene056444:intron | 40.0% |
| ! | GTTTTTGTTCAAGCTGCTTG+TGG | - | chr8.2:33278402-33278421 | MS.gene056444:intron | 40.0% |
| ! | TCACGGATTATAGGAACAAG+TGG | + | chr8.2:33277087-33277106 | None:intergenic | 40.0% |
| ! | TCTCTTTTAAATAGGACCGG+AGG | - | chr8.2:33279443-33279462 | MS.gene056444:intron | 40.0% |
| ! | TGGCTAAGAGATTTGGAATG+AGG | - | chr8.2:33278268-33278287 | MS.gene056444:intron | 40.0% |
| !!! | CATTGCTGCAAGTTTTGGTT+TGG | - | chr8.2:33278200-33278219 | MS.gene056444:intron | 40.0% |
| !!! | CTACTGGTTTTCTTCTTGTG+AGG | - | chr8.2:33277286-33277305 | MS.gene056444:CDS | 40.0% |
| !!! | TGTGTGATTTTGGGACTTGT+TGG | - | chr8.2:33278339-33278358 | MS.gene056444:intron | 40.0% |
| AAAAACATGCCACCCCATTG+TGG | + | chr8.2:33279706-33279725 | None:intergenic | 45.0% | |
| AACCTAACAGCGACGGATAT+AGG | - | chr8.2:33277114-33277133 | MS.gene056444:CDS | 45.0% | |
| AACTCAAAGGAGAGGGAGAA+AGG | - | chr8.2:33279778-33279797 | MS.gene056444:CDS | 45.0% | |
| AATATGGTTTCTCAGGTGGG+TGG | - | chr8.2:33277803-33277822 | MS.gene056444:intron | 45.0% | |
| AGGTCCTTAGGAGTCATATC+AGG | - | chr8.2:33279535-33279554 | MS.gene056444:CDS | 45.0% | |
| ATATCAGGAATGACAGGAGG+AGG | - | chr8.2:33279550-33279569 | MS.gene056444:CDS | 45.0% | |
| ATATGGTTTCTCAGGTGGGT+GGG | - | chr8.2:33277804-33277823 | MS.gene056444:intron | 45.0% | |
| CAACCTTAACCTAACAGCGA+CGG | - | chr8.2:33277107-33277126 | MS.gene056444:CDS | 45.0% | |
| CATTTCAACTAGGCCTTCTG+AGG | - | chr8.2:33279864-33279883 | MS.gene056444:CDS | 45.0% | |
| CTGAATGGAACTCAAAGGAG+AGG | - | chr8.2:33279770-33279789 | MS.gene056444:CDS | 45.0% | |
| GACAAGACAAACTGAAGGCA+AGG | + | chr8.2:33278836-33278855 | None:intergenic | 45.0% | |
| GACTTGATTGGAGACCTAGT+TGG | - | chr8.2:33279255-33279274 | MS.gene056444:intron | 45.0% | |
| GGAAGAGCAAATGGTTTCTC+AGG | - | chr8.2:33277387-33277406 | MS.gene056444:intron | 45.0% | |
| GGAGTCATATCAGGAATGAC+AGG | - | chr8.2:33279544-33279563 | MS.gene056444:CDS | 45.0% | |
| GGGGTAGATTATGGTGTTTG+TGG | - | chr8.2:33278289-33278308 | MS.gene056444:intron | 45.0% | |
| GTCATATCAGGAATGACAGG+AGG | - | chr8.2:33279547-33279566 | MS.gene056444:CDS | 45.0% | |
| TATCCGTCGCTGTTAGGTTA+AGG | + | chr8.2:33277113-33277132 | None:intergenic | 45.0% | |
| TGGATTTGTCAAACGTTGGC+TGG | - | chr8.2:33278309-33278328 | MS.gene056444:intron | 45.0% | |
| TTCCTATATCCGTCGCTGTT+AGG | + | chr8.2:33277119-33277138 | None:intergenic | 45.0% | |
| ! | GCTGCTTGTGGAATGACTTT+TGG | - | chr8.2:33278414-33278433 | MS.gene056444:intron | 45.0% |
| ! | TGTTTAGGATGTACTCCCTC+CGG | - | chr8.2:33279329-33279348 | MS.gene056444:intron | 45.0% |
| !! | GGAACTGCTTGTGATTTGGT+TGG | - | chr8.2:33277189-33277208 | MS.gene056444:CDS | 45.0% |
| !!! | CAATGGGGTGGCATGTTTTT+TGG | - | chr8.2:33279706-33279725 | MS.gene056444:CDS | 45.0% |
| !!! | GTTTTTTCTAGACCAGGAGG+TGG | - | chr8.2:33278228-33278247 | MS.gene056444:intron | 45.0% |
| !! | TAAAATAATTAAAAAATGAA+AGG | + | chr8.2:33278473-33278492 | None:intergenic | 5.0% |
| !!! | AAATTTGTTTATATTAAAAT+TGG | + | chr8.2:33277681-33277700 | None:intergenic | 5.0% |
| AAAGCAGCAGAAGCAAGACG+AGG | + | chr8.2:33277216-33277235 | None:intergenic | 50.0% | |
| AGGGAGAAAGGCTCTCATCA+TGG | - | chr8.2:33279790-33279809 | MS.gene056444:CDS | 50.0% | |
| GCGACGGATATAGGAAATGC+TGG | - | chr8.2:33277123-33277142 | MS.gene056444:CDS | 50.0% | |
| GGTGGTGTAACATCCTCAGA+AGG | + | chr8.2:33279880-33279899 | None:intergenic | 50.0% | |
| TATGGTTTCTCAGGTGGGTG+GGG | - | chr8.2:33277805-33277824 | MS.gene056444:intron | 50.0% | |
| !! | GCTGGTGTTGCTTCTGTTTC+TGG | - | chr8.2:33277141-33277160 | MS.gene056444:CDS | 50.0% |
| CAGGAATGACAGGAGGAGGA+GGG | - | chr8.2:33279554-33279573 | MS.gene056444:CDS | 55.0% | |
| TCAGGAATGACAGGAGGAGG+AGG | - | chr8.2:33279553-33279572 | MS.gene056444:CDS | 55.0% | |
| ! | GTTGTGTTGCTCCTCCACCA+AGG | + | chr8.2:33277834-33277853 | None:intergenic | 55.0% |
| ACAGGAGGAGGAGGGAACGT+AGG | - | chr8.2:33279562-33279581 | MS.gene056444:CDS | 60.0% | |
| TCAGGTGGGTGGGGTAACCT+TGG | - | chr8.2:33277814-33277833 | MS.gene056444:intron | 60.0% | |
| GGGTGGGGTAACCTTGGTGG+AGG | - | chr8.2:33277820-33277839 | MS.gene056444:intron | 65.0% | |
| GGTGGGTGGGGTAACCTTGG+TGG | - | chr8.2:33277817-33277836 | MS.gene056444:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 33277018 | 33279912 | 33277018 | ID=MS.gene056444 |
| chr8.2 | mRNA | 33277018 | 33279912 | 33277018 | ID=MS.gene056444.t1;Parent=MS.gene056444 |
| chr8.2 | exon | 33279522 | 33279912 | 33279522 | ID=MS.gene056444.t1.exon1;Parent=MS.gene056444.t1 |
| chr8.2 | CDS | 33279522 | 33279912 | 33279522 | ID=cds.MS.gene056444.t1;Parent=MS.gene056444.t1 |
| chr8.2 | exon | 33278470 | 33279112 | 33278470 | ID=MS.gene056444.t1.exon2;Parent=MS.gene056444.t1 |
| chr8.2 | CDS | 33278470 | 33279112 | 33278470 | ID=cds.MS.gene056444.t1;Parent=MS.gene056444.t1 |
| chr8.2 | exon | 33277018 | 33277393 | 33277018 | ID=MS.gene056444.t1.exon3;Parent=MS.gene056444.t1 |
| chr8.2 | CDS | 33277018 | 33277393 | 33277018 | ID=cds.MS.gene056444.t1;Parent=MS.gene056444.t1 |
| Gene Sequence |
| Protein sequence |
