Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08732.t1 | XP_013455976.1 | 99.2 | 526 | 4 | 0 | 1 | 526 | 1 | 526 | 2.80E-300 | 1040.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08732.t1 | O82811 | 79.0 | 529 | 108 | 1 | 1 | 526 | 1 | 529 | 1.8e-247 | 856.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08732.t1 | G7IRD1 | 99.2 | 526 | 4 | 0 | 1 | 526 | 1 | 526 | 2.0e-300 | 1040.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050083 | MS.gene08732 | 0.827111 | 1.87E-54 | -1.69E-46 |
| MS.gene050095 | MS.gene08732 | 0.886359 | 3.66E-72 | -1.69E-46 |
| MS.gene050096 | MS.gene08732 | 0.895484 | 9.18E-76 | -1.69E-46 |
| MS.gene05240 | MS.gene08732 | 0.811158 | 8.05E-51 | -1.69E-46 |
| MS.gene053031 | MS.gene08732 | 0.803235 | 3.84E-49 | -1.69E-46 |
| MS.gene053406 | MS.gene08732 | 0.819455 | 1.15E-52 | -1.69E-46 |
| MS.gene053488 | MS.gene08732 | 0.80595 | 1.04E-49 | -1.69E-46 |
| MS.gene055124 | MS.gene08732 | 0.805812 | 1.11E-49 | -1.69E-46 |
| MS.gene058603 | MS.gene08732 | 0.8062 | 9.23E-50 | -1.69E-46 |
| MS.gene059944 | MS.gene08732 | 0.809895 | 1.51E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08732 | MS.gene007705 | PPI |
| MS.gene08732 | MS.gene050096 | PPI |
| MS.gene056444 | MS.gene08732 | PPI |
| MS.gene08732 | MS.gene050095 | PPI |
| MS.gene08666 | MS.gene08732 | PPI |
| MS.gene08732 | MS.gene08733 | PPI |
| MS.gene08732 | MS.gene008847 | PPI |
| MS.gene08732 | MS.gene97933 | PPI |
| MS.gene08732 | MS.gene067952 | PPI |
| MS.gene007704 | MS.gene08732 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08732.t1 | MTR_4g057890 | 99.240 | 526 | 4 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1070 |
| MS.gene08732.t1 | MTR_4g057865 | 99.049 | 526 | 5 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1069 |
| MS.gene08732.t1 | MTR_8g069775 | 61.554 | 489 | 186 | 2 | 38 | 524 | 18 | 506 | 0.0 | 591 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08732.t1 | AT1G08090 | 79.017 | 529 | 108 | 1 | 1 | 526 | 1 | 529 | 0.0 | 881 |
| MS.gene08732.t1 | AT5G60770 | 79.017 | 529 | 105 | 2 | 1 | 526 | 1 | 526 | 0.0 | 877 |
| MS.gene08732.t1 | AT1G08100 | 75.048 | 517 | 126 | 2 | 7 | 521 | 6 | 521 | 0.0 | 818 |
| MS.gene08732.t1 | AT5G60780 | 72.983 | 533 | 136 | 3 | 2 | 526 | 6 | 538 | 0.0 | 793 |
| MS.gene08732.t1 | AT3G45060 | 72.097 | 534 | 136 | 4 | 5 | 526 | 9 | 541 | 0.0 | 780 |
| MS.gene08732.t1 | AT1G12940 | 59.259 | 486 | 194 | 2 | 38 | 522 | 20 | 502 | 0.0 | 605 |
| MS.gene08732.t1 | AT5G14570 | 48.723 | 470 | 219 | 4 | 41 | 493 | 18 | 482 | 8.87e-152 | 443 |
Find 135 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGGAGTCGCTTCGGTTTC+AGG | 0.105482 | 4.2:-45244301 | MS.gene08732:CDS |
| GCATGTTATCATGGGTATTT+TGG | 0.143284 | 4.2:-45243906 | MS.gene08732:CDS |
| TGCTGCTGGTTGGGGTAATA+TGG | 0.200878 | 4.2:-45244038 | MS.gene08732:CDS |
| ATCAACTGGTAATGCAAATT+TGG | 0.211102 | 4.2:+45244498 | None:intergenic |
| AAAATTATTGGACTTGTTAA+TGG | 0.213969 | 4.2:-45244064 | MS.gene08732:CDS |
| ATGTTTAATAGTAAAATTAT+TGG | 0.221351 | 4.2:-45244076 | MS.gene08732:CDS |
| CCTACTTTATGGTTACTCTA+TGG | 0.225302 | 4.2:-45243628 | MS.gene08732:CDS |
| CATTTGTTTCATGCCAATAT+TGG | 0.240129 | 4.2:-45244108 | MS.gene08732:CDS |
| GTTTGCATCAACCAAGTCTT+AGG | 0.268930 | 4.2:-45242785 | MS.gene08732:CDS |
| GGAATCATTGCTGCATCCTT+TGG | 0.291659 | 4.2:-45243311 | MS.gene08732:CDS |
| CAACAGCTTCAGGTCTTTCA+TGG | 0.291908 | 4.2:-45242953 | MS.gene08732:CDS |
| CGTCGGATTTCGTGAGGTTA+AGG | 0.293043 | 4.2:+45244332 | None:intergenic |
| CACTCAGCTTATTATGCCTT+TGG | 0.295935 | 4.2:-45244005 | MS.gene08732:CDS |
| GTTTATGATTGGTTTCTCTT+TGG | 0.307610 | 4.2:-45244134 | MS.gene08732:CDS |
| AGCTCCATGCATGGAGTAAC+TGG | 0.308320 | 4.2:-45244580 | MS.gene08732:CDS |
| TAATGGTACTGCTGCTGGTT+GGG | 0.317688 | 4.2:-45244047 | MS.gene08732:CDS |
| ACATTGTACTCATCCAATAT+TGG | 0.319895 | 4.2:+45244095 | None:intergenic |
| TGAAAAGAGTTTGAAAACTT+TGG | 0.345000 | 4.2:+45244462 | None:intergenic |
| GGTGCAATTTGTGACCTATT+AGG | 0.354243 | 4.2:-45244253 | MS.gene08732:CDS |
| TTCCAGCTGTGTGTAGCTTT+AGG | 0.354844 | 4.2:+45243330 | None:intergenic |
| TAGTGGGTAGGAGTTGTATT+TGG | 0.358123 | 4.2:+45242705 | None:intergenic |
| CGCCATTAGTCCCGATCATC+CGG | 0.360837 | 4.2:-45244360 | MS.gene08732:CDS |
| ATTCATATCAAGAAGATCAT+TGG | 0.361492 | 4.2:-45243060 | MS.gene08732:CDS |
| GATGTAGCAGCAAGATTATT+CGG | 0.362131 | 4.2:-45243245 | MS.gene08732:CDS |
| GGAATAATATCAGGCTTAAC+TGG | 0.363229 | 4.2:-45243038 | MS.gene08732:CDS |
| AGAAAGATATCCATGATAAA+TGG | 0.374158 | 4.2:+45244413 | None:intergenic |
| GCAGCATGTGGTGCAACATT+TGG | 0.378132 | 4.2:-45243092 | MS.gene08732:CDS |
| TGGTTGGTTGCATGTTATCA+TGG | 0.382144 | 4.2:-45243915 | MS.gene08732:CDS |
| GTGCTACTCCTTTCACTGCT+TGG | 0.383160 | 4.2:-45243958 | MS.gene08732:CDS |
| CTGCTGGTTATATAGCAGTT+AGG | 0.391168 | 4.2:-45244156 | MS.gene08732:CDS |
| AGATCATTGGGAATAATATC+AGG | 0.396150 | 4.2:-45243047 | MS.gene08732:CDS |
| ACTCCATGCATGGAGCTTCC+AGG | 0.398090 | 4.2:+45244586 | None:intergenic |
| GGTTGGGGTAATATGGGTGG+TGG | 0.398747 | 4.2:-45244031 | MS.gene08732:CDS |
| GCAGGTGGAAACTTTGGTTC+CGG | 0.404321 | 4.2:-45243014 | MS.gene08732:CDS |
| AACCATAACGTGGACCTAAT+AGG | 0.411808 | 4.2:+45244239 | None:intergenic |
| GCTGCTGGTTGGGGTAATAT+GGG | 0.417787 | 4.2:-45244037 | MS.gene08732:CDS |
| CTACTTTATGGTTACTCTAT+GGG | 0.419373 | 4.2:-45243627 | MS.gene08732:CDS |
| CCTTGGTGCTTTGCAGAAGA+AGG | 0.426831 | 4.2:-45243849 | MS.gene08732:CDS |
| AACATAGTTGCTCGTCCATT+CGG | 0.426966 | 4.2:-45243281 | MS.gene08732:CDS |
| GTTGGGGTAATATGGGTGGT+GGG | 0.435234 | 4.2:-45244030 | MS.gene08732:CDS |
| ATAGCAGTTAGGTTTATGAT+TGG | 0.436014 | 4.2:-45244145 | MS.gene08732:CDS |
| TGGATGGGTGCAATGATTGT+TGG | 0.437054 | 4.2:-45242933 | MS.gene08732:CDS |
| TATATAAATGGCTGATATTG+AGG | 0.438207 | 4.2:-45244614 | None:intergenic |
| AAATATCAACTGTGTTAATC+CGG | 0.442980 | 4.2:+45242995 | None:intergenic |
| GGTATGCTATAACAAATTAC+AGG | 0.443291 | 4.2:-45243665 | MS.gene08732:CDS |
| GACCTATTAGGTCCACGTTA+TGG | 0.448846 | 4.2:-45244241 | MS.gene08732:CDS |
| ACTGGTGCAGGTGGAAACTT+TGG | 0.449819 | 4.2:-45243020 | MS.gene08732:CDS |
| AATGATCTTCTTGATATGAA+TGG | 0.450757 | 4.2:+45243062 | None:intergenic |
| TTCATATCAAGAAGATCATT+GGG | 0.450861 | 4.2:-45243059 | MS.gene08732:CDS |
| AATGGTACTGCTGCTGGTTG+GGG | 0.451568 | 4.2:-45244046 | MS.gene08732:CDS |
| GGAAAATGAACAAATGCAAC+AGG | 0.456403 | 4.2:+45242900 | None:intergenic |
| TGAGAACCTTCCATTTATCA+TGG | 0.456413 | 4.2:-45244423 | MS.gene08732:CDS |
| CTTGTTAATGGTACTGCTGC+TGG | 0.461616 | 4.2:-45244052 | MS.gene08732:CDS |
| GCTGATATTGAGGGTTCACC+TGG | 0.463825 | 4.2:-45244604 | MS.gene08732:CDS |
| AGCTTCAGGTCTTTCATGGA+TGG | 0.465615 | 4.2:-45242949 | MS.gene08732:CDS |
| AGAAAACTCCTCCTAGGGTT+TGG | 0.467221 | 4.2:+45243189 | None:intergenic |
| TAAGGTTGTCCCGGATGATC+GGG | 0.469055 | 4.2:+45244350 | None:intergenic |
| TTGCTGAGTATTTCTATGAC+AGG | 0.469828 | 4.2:-45243578 | MS.gene08732:intron |
| ATATGCAGAAAACTCCTCCT+AGG | 0.470665 | 4.2:+45243183 | None:intergenic |
| AACACTATTACACTTCTGAA+TGG | 0.470788 | 4.2:-45242830 | MS.gene08732:CDS |
| GGTTACCATCAGGTAAATCT+TGG | 0.480850 | 4.2:+45243870 | None:intergenic |
| TCCCGGATGATCGGGACTAA+TGG | 0.482655 | 4.2:+45244358 | None:intergenic |
| CCATAGAGTAACCATAAAGT+AGG | 0.483674 | 4.2:+45243628 | None:intergenic |
| TGGTAACGCTGGAGTCGCTT+CGG | 0.493073 | 4.2:-45244308 | MS.gene08732:CDS |
| TTAATGGTACTGCTGCTGGT+TGG | 0.498414 | 4.2:-45244048 | MS.gene08732:CDS |
| ATATCAGGCTTAACTGGTGC+AGG | 0.499375 | 4.2:-45243032 | MS.gene08732:CDS |
| TGCGAATGTCGAGACAAAAC+AGG | 0.502545 | 4.2:+45244387 | None:intergenic |
| TCTTCCAGTTACTCCATGCA+TGG | 0.504862 | 4.2:+45244576 | None:intergenic |
| TTGGGGTAATATGGGTGGTG+GGG | 0.507796 | 4.2:-45244029 | MS.gene08732:CDS |
| AACCTAAAGCTACACACAGC+TGG | 0.512286 | 4.2:-45243332 | MS.gene08732:CDS |
| CTATAACAAATTACAGGACA+TGG | 0.513380 | 4.2:-45243659 | MS.gene08732:CDS |
| TCGTGAGGTTAAGGTTGTCC+CGG | 0.513783 | 4.2:+45244341 | None:intergenic |
| TTAAGGTTGTCCCGGATGAT+CGG | 0.515983 | 4.2:+45244349 | None:intergenic |
| GTGGTATCAGTTGGAACCAT+TGG | 0.524676 | 4.2:+45244523 | None:intergenic |
| GATTTGTGTTCAGAATCAAC+TGG | 0.525048 | 4.2:+45244484 | None:intergenic |
| TCGGCATGCGAGGAAGGCTA+TGG | 0.535742 | 4.2:-45243226 | MS.gene08732:CDS |
| TCATTTGTTGAAAATGCTGC+TGG | 0.536611 | 4.2:-45244172 | MS.gene08732:CDS |
| GATTTACCTGATGGTAACCT+TGG | 0.538623 | 4.2:-45243866 | MS.gene08732:CDS |
| TCCATGATCCTCTTCTCAGT+TGG | 0.543814 | 4.2:-45243122 | MS.gene08732:CDS |
| GATTATTCGGCATGCGAGGA+AGG | 0.544135 | 4.2:-45243232 | MS.gene08732:CDS |
| GTCATCAGTTGCTTCACCAA+TGG | 0.548350 | 4.2:-45244539 | MS.gene08732:CDS |
| CATTGCTGCATCCTTTGGAA+TGG | 0.548449 | 4.2:-45243306 | MS.gene08732:CDS |
| TTCTCAGCAAACCTAAGACT+TGG | 0.549078 | 4.2:+45242774 | None:intergenic |
| ATATAAATGGCTGATATTGA+GGG | 0.549879 | 4.2:-45244613 | None:intergenic |
| GGTTGGTTGCATGTTATCAT+GGG | 0.550695 | 4.2:-45243914 | MS.gene08732:CDS |
| GCTTCAGGTCTTTCATGGAT+GGG | 0.552112 | 4.2:-45242948 | MS.gene08732:CDS |
| ATGATAACATGCAACCAACC+AGG | 0.556711 | 4.2:+45243917 | None:intergenic |
| CTTGTGCTCCAACTGAGAAG+AGG | 0.561854 | 4.2:+45243114 | None:intergenic |
| TGGGTAGGAGTTGTATTTGG+TGG | 0.563220 | 4.2:+45242708 | None:intergenic |
| AACTATGTTTGCCATTCCAA+AGG | 0.569835 | 4.2:+45243295 | None:intergenic |
| CATAGAGTAACCATAAAGTA+GGG | 0.569934 | 4.2:+45243629 | None:intergenic |
| CTTGGTGCTTTGCAGAAGAA+GGG | 0.574830 | 4.2:-45243848 | MS.gene08732:CDS |
| TCACCTGGAAGCTCCATGCA+TGG | 0.576261 | 4.2:-45244589 | MS.gene08732:CDS |
| AATTTGGCTGTGGTATCAGT+TGG | 0.576596 | 4.2:+45244514 | None:intergenic |
| GCAATTCTCCAAGCAGTGAA+AGG | 0.578221 | 4.2:+45243950 | None:intergenic |
| GAGAATAGTCGTTCTGAGAG+AGG | 0.578576 | 4.2:-45242756 | MS.gene08732:CDS |
| AATGAAGATGAAGTACAGAA+AGG | 0.578938 | 4.2:-45242807 | MS.gene08732:CDS |
| AATGACATACAAAACACTGT+TGG | 0.582355 | 4.2:+45244190 | None:intergenic |
| AAATCCGACGTTGGTAACGC+TGG | 0.586068 | 4.2:-45244319 | MS.gene08732:CDS |
| AAATGGAAGGTTCTCATGTG+AGG | 0.586590 | 4.2:+45244430 | None:intergenic |
| AAAGCACCAAGGTTACCATC+AGG | 0.588442 | 4.2:+45243860 | None:intergenic |
| TATGAGTTGATTAGAAGAGC+TGG | 0.589543 | 4.2:-45243980 | MS.gene08732:CDS |
| TTGGTGCTGTAAGCATGATA+AGG | 0.592020 | 4.2:+45244209 | None:intergenic |
| TTAGGCCAAGATTTACCTGA+TGG | 0.597509 | 4.2:-45243875 | MS.gene08732:CDS |
| TCTGATGCATATCCGCCGAA+TGG | 0.605405 | 4.2:+45243266 | None:intergenic |
| TACCAACGTCGGATTTCGTG+AGG | 0.605986 | 4.2:+45244326 | None:intergenic |
| TCAGGCTTAACTGGTGCAGG+TGG | 0.606243 | 4.2:-45243029 | MS.gene08732:CDS |
| GGCATAGCATAACTACTAGT+GGG | 0.609087 | 4.2:+45242689 | None:intergenic |
| ATCATGGATAGTACTGCGAT+CGG | 0.609698 | 4.2:+45243137 | None:intergenic |
| TGGATCTTCCAAACCCTAGG+AGG | 0.611729 | 4.2:-45243197 | MS.gene08732:CDS |
| ATAGTTGCTCGTCCATTCGG+CGG | 0.613192 | 4.2:-45243278 | MS.gene08732:CDS |
| CCTTCTTCTGCAAAGCACCA+AGG | 0.613924 | 4.2:+45243849 | None:intergenic |
| TCCAACTGAGAAGAGGATCA+TGG | 0.614752 | 4.2:+45243121 | None:intergenic |
| TATGCAGAAAACTCCTCCTA+GGG | 0.614927 | 4.2:+45243184 | None:intergenic |
| AATGGAAGGTTCTCATGTGA+GGG | 0.615898 | 4.2:+45244431 | None:intergenic |
| CTAATCAACTCATACACCAA+AGG | 0.617873 | 4.2:+45243989 | None:intergenic |
| GAGGAAGGCTATGGACACTC+TGG | 0.618172 | 4.2:-45243217 | MS.gene08732:CDS |
| TAGCATAACTACTAGTGGGT+AGG | 0.619737 | 4.2:+45242693 | None:intergenic |
| GCCATTAGTCCCGATCATCC+GGG | 0.620270 | 4.2:-45244359 | MS.gene08732:CDS |
| AGATATCCATGATAAATGGA+AGG | 0.625047 | 4.2:+45244417 | None:intergenic |
| TGAAGCAACTGATGACATGA+AGG | 0.627231 | 4.2:+45244546 | None:intergenic |
| GCTGGTTGGGGTAATATGGG+TGG | 0.628336 | 4.2:-45244034 | MS.gene08732:CDS |
| GCAAGATTATTCGGCATGCG+AGG | 0.636291 | 4.2:-45243236 | MS.gene08732:CDS |
| CTCTGGATCTTCCAAACCCT+AGG | 0.638609 | 4.2:-45243200 | MS.gene08732:CDS |
| TGGTAATGCAAATTTGGCTG+TGG | 0.639028 | 4.2:+45244504 | None:intergenic |
| CTCAGCAATGACATTGTCAG+TGG | 0.646298 | 4.2:+45243593 | None:intergenic |
| TGATAACATGCAACCAACCA+GGG | 0.648113 | 4.2:+45243918 | None:intergenic |
| GTTGGAGCACAAGCAGCATG+TGG | 0.659585 | 4.2:-45243104 | MS.gene08732:CDS |
| TGCTAAAGACAAGTTCACAA+AGG | 0.663793 | 4.2:-45243819 | MS.gene08732:intron |
| TTCTGAGAGAGGAAAGCGTG+TGG | 0.674767 | 4.2:-45242745 | MS.gene08732:CDS |
| AACCTCACGAAATCCGACGT+TGG | 0.679989 | 4.2:-45244328 | MS.gene08732:CDS |
| AGGAAAGCACAACCATAACG+TGG | 0.709978 | 4.2:+45244229 | None:intergenic |
| GACTCCAGCGTTACCAACGT+CGG | 0.710420 | 4.2:+45244315 | None:intergenic |
| CAAAGGCATAATAAGCTGAG+TGG | 0.711499 | 4.2:+45244006 | None:intergenic |
| AGGAACATGCTACCCCACTG+TGG | 0.730068 | 4.2:+45242879 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTTTAATAGTAAAATTAT+TGG | - | chr4.2:45243235-45243254 | MS.gene08732:CDS | 10.0% |
| !! | CAAAGTATATTAAATAATTT+AGG | - | chr4.2:45243591-45243610 | MS.gene08732:CDS | 10.0% |
| !!! | ACACAATTTAAAATTATAAT+CGG | - | chr4.2:45243856-45243875 | MS.gene08732:CDS | 10.0% |
| !!! | GATTTTTTTTTTTTTTTTTC+AGG | - | chr4.2:45243617-45243636 | MS.gene08732:CDS | 10.0% |
| !!! | CACAATTTAAAATTATAATC+GGG | - | chr4.2:45243857-45243876 | MS.gene08732:CDS | 15.0% |
| !! | TTAATATACTTTGAACTTGA+AGG | + | chr4.2:45243584-45243603 | None:intergenic | 20.0% |
| !!! | AAAATTATTGGACTTGTTAA+TGG | - | chr4.2:45243247-45243266 | MS.gene08732:CDS | 20.0% |
| !!! | TCAATTGATTAATTGTTTTG+TGG | + | chr4.2:45243553-45243572 | None:intergenic | 20.0% |
| ! | AAATATCAACTGTGTTAATC+CGG | + | chr4.2:45244319-45244338 | None:intergenic | 25.0% |
| ! | AATGATCTTCTTGATATGAA+TGG | + | chr4.2:45244252-45244271 | None:intergenic | 25.0% |
| ! | AGAAAGATATCCATGATAAA+TGG | + | chr4.2:45242901-45242920 | None:intergenic | 25.0% |
| ! | ATTCATATCAAGAAGATCAT+TGG | - | chr4.2:45244251-45244270 | MS.gene08732:CDS | 25.0% |
| ! | CTAATGAATGGATATAAAAC+AGG | - | chr4.2:45243953-45243972 | MS.gene08732:CDS | 25.0% |
| ! | TCTAAGAAATCACTAATGAA+TGG | - | chr4.2:45243941-45243960 | MS.gene08732:CDS | 25.0% |
| ! | TGAAAAGAGTTTGAAAACTT+TGG | + | chr4.2:45242852-45242871 | None:intergenic | 25.0% |
| ! | TGTAGATATATACAATCTTG+AGG | + | chr4.2:45243802-45243821 | None:intergenic | 25.0% |
| ! | TTCATATCAAGAAGATCATT+GGG | - | chr4.2:45244252-45244271 | MS.gene08732:CDS | 25.0% |
| !! | AGTTTTCAAACTCTTTTCAA+TGG | - | chr4.2:45242853-45242872 | MS.gene08732:CDS | 25.0% |
| !!! | ACAAACCTTTTTAAAAACCT+AGG | - | chr4.2:45243889-45243908 | MS.gene08732:CDS | 25.0% |
| !!! | ACTTAATTTGTGTCATTGAT+TGG | - | chr4.2:45243525-45243544 | MS.gene08732:intron | 25.0% |
| !!! | TTTTTTTTTTTCAGGTGTTG+TGG | - | chr4.2:45243625-45243644 | MS.gene08732:CDS | 25.0% |
| AACACTATTACACTTCTGAA+TGG | - | chr4.2:45244481-45244500 | MS.gene08732:CDS | 30.0% | |
| AATGAAGATGAAGTACAGAA+AGG | - | chr4.2:45244504-45244523 | MS.gene08732:CDS | 30.0% | |
| AATGACATACAAAACACTGT+TGG | + | chr4.2:45243124-45243143 | None:intergenic | 30.0% | |
| ACATTGTACTCATCCAATAT+TGG | + | chr4.2:45243219-45243238 | None:intergenic | 30.0% | |
| AGATATCCATGATAAATGGA+AGG | + | chr4.2:45242897-45242916 | None:intergenic | 30.0% | |
| AGATCATTGGGAATAATATC+AGG | - | chr4.2:45244264-45244283 | MS.gene08732:CDS | 30.0% | |
| ATAGCAGTTAGGTTTATGAT+TGG | - | chr4.2:45243166-45243185 | MS.gene08732:CDS | 30.0% | |
| CATAGAGTAACCATAAAGTA+GGG | + | chr4.2:45243685-45243704 | None:intergenic | 30.0% | |
| CATTTGTTTCATGCCAATAT+TGG | - | chr4.2:45243203-45243222 | MS.gene08732:CDS | 30.0% | |
| CTACTTTATGGTTACTCTAT+GGG | - | chr4.2:45243684-45243703 | MS.gene08732:intron | 30.0% | |
| CTATAACAAATTACAGGACA+TGG | - | chr4.2:45243652-45243671 | MS.gene08732:CDS | 30.0% | |
| GGTATGCTATAACAAATTAC+AGG | - | chr4.2:45243646-45243665 | MS.gene08732:CDS | 30.0% | |
| GTTGAGAATTAAGATGCTTA+AGG | - | chr4.2:45243759-45243778 | MS.gene08732:intron | 30.0% | |
| TTCTATTACAATTGCAGTTG+CGG | - | chr4.2:45243833-45243852 | MS.gene08732:CDS | 30.0% | |
| ! | ATCAACTGGTAATGCAAATT+TGG | + | chr4.2:45242816-45242835 | None:intergenic | 30.0% |
| ! | ATTTGTTCATTTTCCACAGT+GGG | - | chr4.2:45244419-45244438 | MS.gene08732:CDS | 30.0% |
| ! | TATGTTTGTTAAAGTCTCCT+AGG | + | chr4.2:45243909-45243928 | None:intergenic | 30.0% |
| ! | TCAAAATTTTCAACAGCTTC+AGG | - | chr4.2:45244348-45244367 | MS.gene08732:CDS | 30.0% |
| ! | TCTTCATTGATCTCTTTTGA+AGG | + | chr4.2:45244462-45244481 | None:intergenic | 30.0% |
| !! | AGTCTCCTAGGTTTTTAAAA+AGG | + | chr4.2:45243897-45243916 | None:intergenic | 30.0% |
| !! | GTTTATGATTGGTTTCTCTT+TGG | - | chr4.2:45243177-45243196 | MS.gene08732:CDS | 30.0% |
| !! | TTTCAGGTAGTATTTTCTCA+AGG | - | chr4.2:45243026-45243045 | MS.gene08732:CDS | 30.0% |
| !!! | GGTATTTTGGTCTTAACATT+AGG | - | chr4.2:45243418-45243437 | MS.gene08732:intron | 30.0% |
| AACTATGTTTGCCATTCCAA+AGG | + | chr4.2:45244019-45244038 | None:intergenic | 35.0% | |
| CCATAGAGTAACCATAAAGT+AGG | + | chr4.2:45243686-45243705 | None:intergenic | 35.0% | |
| CCTACTTTATGGTTACTCTA+TGG | - | chr4.2:45243683-45243702 | MS.gene08732:intron | 35.0% | |
| CTAATCAACTCATACACCAA+AGG | + | chr4.2:45243325-45243344 | None:intergenic | 35.0% | |
| GATGTAGCAGCAAGATTATT+CGG | - | chr4.2:45244066-45244085 | MS.gene08732:CDS | 35.0% | |
| GATTTGTGTTCAGAATCAAC+TGG | + | chr4.2:45242830-45242849 | None:intergenic | 35.0% | |
| GGAAAATGAACAAATGCAAC+AGG | + | chr4.2:45244414-45244433 | None:intergenic | 35.0% | |
| GGAATAATATCAGGCTTAAC+TGG | - | chr4.2:45244273-45244292 | MS.gene08732:CDS | 35.0% | |
| TGAGAACCTTCCATTTATCA+TGG | - | chr4.2:45242888-45242907 | MS.gene08732:CDS | 35.0% | |
| TGCTAAAGACAAGTTCACAA+AGG | - | chr4.2:45243492-45243511 | MS.gene08732:intron | 35.0% | |
| ! | ATTTTCTCAAGGCTTGCAAT+GGG | - | chr4.2:45243037-45243056 | MS.gene08732:CDS | 35.0% |
| ! | CATTTGTTCATTTTCCACAG+TGG | - | chr4.2:45244418-45244437 | MS.gene08732:CDS | 35.0% |
| ! | GCATGTTATCATGGGTATTT+TGG | - | chr4.2:45243405-45243424 | MS.gene08732:intron | 35.0% |
| ! | TATTTTCTCAAGGCTTGCAA+TGG | - | chr4.2:45243036-45243055 | MS.gene08732:CDS | 35.0% |
| ! | TCATTTGTTGAAAATGCTGC+TGG | - | chr4.2:45243139-45243158 | MS.gene08732:CDS | 35.0% |
| ! | TGGATTTTTGCCCTACTTTA+TGG | - | chr4.2:45243672-45243691 | MS.gene08732:CDS | 35.0% |
| ! | TTGCTGAGTATTTCTATGAC+AGG | - | chr4.2:45243733-45243752 | MS.gene08732:intron | 35.0% |
| ! | TTTGTTCATTTTCCACAGTG+GGG | - | chr4.2:45244420-45244439 | MS.gene08732:CDS | 35.0% |
| !! | TATGAGTTGATTAGAAGAGC+TGG | - | chr4.2:45243331-45243350 | MS.gene08732:CDS | 35.0% |
| !! | TCATTGATCTCTTTTGAAGG+TGG | + | chr4.2:45244459-45244478 | None:intergenic | 35.0% |
| !!! | AGAATTGCCTTTTTTATCCC+TGG | - | chr4.2:45243376-45243395 | MS.gene08732:intron | 35.0% |
| AAATGGAAGGTTCTCATGTG+AGG | + | chr4.2:45242884-45242903 | None:intergenic | 40.0% | |
| AACATAGTTGCTCGTCCATT+CGG | - | chr4.2:45244030-45244049 | MS.gene08732:CDS | 40.0% | |
| AACCATAACGTGGACCTAAT+AGG | + | chr4.2:45243075-45243094 | None:intergenic | 40.0% | |
| AATGGAAGGTTCTCATGTGA+GGG | + | chr4.2:45242883-45242902 | None:intergenic | 40.0% | |
| AATTTGGCTGTGGTATCAGT+TGG | + | chr4.2:45242800-45242819 | None:intergenic | 40.0% | |
| ATATGCAGAAAACTCCTCCT+AGG | + | chr4.2:45244131-45244150 | None:intergenic | 40.0% | |
| ATCATGGATAGTACTGCGAT+CGG | + | chr4.2:45244177-45244196 | None:intergenic | 40.0% | |
| ATGATAACATGCAACCAACC+AGG | + | chr4.2:45243397-45243416 | None:intergenic | 40.0% | |
| CAACCAACCAGGGATAAAAA+AGG | + | chr4.2:45243386-45243405 | None:intergenic | 40.0% | |
| CACTCAGCTTATTATGCCTT+TGG | - | chr4.2:45243306-45243325 | MS.gene08732:CDS | 40.0% | |
| GATTTACCTGATGGTAACCT+TGG | - | chr4.2:45243445-45243464 | MS.gene08732:intron | 40.0% | |
| GGTGCAATTTGTGACCTATT+AGG | - | chr4.2:45243058-45243077 | MS.gene08732:CDS | 40.0% | |
| GGTTACCATCAGGTAAATCT+TGG | + | chr4.2:45243444-45243463 | None:intergenic | 40.0% | |
| GTTTGCATCAACCAAGTCTT+AGG | - | chr4.2:45244526-45244545 | MS.gene08732:CDS | 40.0% | |
| TATGCAGAAAACTCCTCCTA+GGG | + | chr4.2:45244130-45244149 | None:intergenic | 40.0% | |
| TGAAGCAACTGATGACATGA+AGG | + | chr4.2:45242768-45242787 | None:intergenic | 40.0% | |
| TGATAACATGCAACCAACCA+GGG | + | chr4.2:45243396-45243415 | None:intergenic | 40.0% | |
| TTAGGCCAAGATTTACCTGA+TGG | - | chr4.2:45243436-45243455 | MS.gene08732:intron | 40.0% | |
| TTCTCAGCAAACCTAAGACT+TGG | + | chr4.2:45244540-45244559 | None:intergenic | 40.0% | |
| ! | CAAAGGCATAATAAGCTGAG+TGG | + | chr4.2:45243308-45243327 | None:intergenic | 40.0% |
| ! | CTGCTGGTTATATAGCAGTT+AGG | - | chr4.2:45243155-45243174 | MS.gene08732:CDS | 40.0% |
| ! | GGAGTTTTCTGCATATGGTT+AGG | - | chr4.2:45244135-45244154 | MS.gene08732:CDS | 40.0% |
| ! | GGTTGGTTGCATGTTATCAT+GGG | - | chr4.2:45243397-45243416 | MS.gene08732:intron | 40.0% |
| ! | TAGGAGGAGTTTTCTGCATA+TGG | - | chr4.2:45244130-45244149 | MS.gene08732:CDS | 40.0% |
| ! | TAGTGGGTAGGAGTTGTATT+TGG | + | chr4.2:45244609-45244628 | None:intergenic | 40.0% |
| ! | TGGTAATGCAAATTTGGCTG+TGG | + | chr4.2:45242810-45242829 | None:intergenic | 40.0% |
| ! | TGGTTGGTTGCATGTTATCA+TGG | - | chr4.2:45243396-45243415 | MS.gene08732:intron | 40.0% |
| !! | TGATCTCTTTTGAAGGTGGA+AGG | + | chr4.2:45244455-45244474 | None:intergenic | 40.0% |
| !! | TTGGTGCTGTAAGCATGATA+AGG | + | chr4.2:45243105-45243124 | None:intergenic | 40.0% |
| !!! | TTGCCTTTTTTATCCCTGGT+TGG | - | chr4.2:45243380-45243399 | MS.gene08732:intron | 40.0% |
| AACCTAAAGCTACACACAGC+TGG | - | chr4.2:45243979-45243998 | MS.gene08732:CDS | 45.0% | |
| AGAAAACTCCTCCTAGGGTT+TGG | + | chr4.2:45244125-45244144 | None:intergenic | 45.0% | |
| AGCTTCAGGTCTTTCATGGA+TGG | - | chr4.2:45244362-45244381 | MS.gene08732:CDS | 45.0% | |
| ATATCAGGCTTAACTGGTGC+AGG | - | chr4.2:45244279-45244298 | MS.gene08732:CDS | 45.0% | |
| CAACAGCTTCAGGTCTTTCA+TGG | - | chr4.2:45244358-45244377 | MS.gene08732:CDS | 45.0% | |
| CTCAGCAATGACATTGTCAG+TGG | + | chr4.2:45243721-45243740 | None:intergenic | 45.0% | |
| CTTGTTAATGGTACTGCTGC+TGG | - | chr4.2:45243259-45243278 | MS.gene08732:CDS | 45.0% | |
| GACCTATTAGGTCCACGTTA+TGG | - | chr4.2:45243070-45243089 | MS.gene08732:CDS | 45.0% | |
| GCAATTCTCCAAGCAGTGAA+AGG | + | chr4.2:45243364-45243383 | None:intergenic | 45.0% | |
| GCTTCAGGTCTTTCATGGAT+GGG | - | chr4.2:45244363-45244382 | MS.gene08732:CDS | 45.0% | |
| GGAATCATTGCTGCATCCTT+TGG | - | chr4.2:45244000-45244019 | MS.gene08732:CDS | 45.0% | |
| GTCATCAGTTGCTTCACCAA+TGG | - | chr4.2:45242772-45242791 | MS.gene08732:CDS | 45.0% | |
| GTGGTATCAGTTGGAACCAT+TGG | + | chr4.2:45242791-45242810 | None:intergenic | 45.0% | |
| TCCAACTGAGAAGAGGATCA+TGG | + | chr4.2:45244193-45244212 | None:intergenic | 45.0% | |
| TCCATGATCCTCTTCTCAGT+TGG | - | chr4.2:45244189-45244208 | MS.gene08732:CDS | 45.0% | |
| TCTTCCAGTTACTCCATGCA+TGG | + | chr4.2:45242738-45242757 | None:intergenic | 45.0% | |
| TGCGAATGTCGAGACAAAAC+AGG | + | chr4.2:45242927-45242946 | None:intergenic | 45.0% | |
| TGGATGGGTGCAATGATTGT+TGG | - | chr4.2:45244378-45244397 | MS.gene08732:CDS | 45.0% | |
| TGGGTAGGAGTTGTATTTGG+TGG | + | chr4.2:45244606-45244625 | None:intergenic | 45.0% | |
| TTAAGGTTGTCCCGGATGAT+CGG | + | chr4.2:45242965-45242984 | None:intergenic | 45.0% | |
| TTAATGGTACTGCTGCTGGT+TGG | - | chr4.2:45243263-45243282 | MS.gene08732:CDS | 45.0% | |
| TTCCAGCTGTGTGTAGCTTT+AGG | + | chr4.2:45243984-45244003 | None:intergenic | 45.0% | |
| ! | AAAGCACCAAGGTTACCATC+AGG | + | chr4.2:45243454-45243473 | None:intergenic | 45.0% |
| ! | AGGAAAGCACAACCATAACG+TGG | + | chr4.2:45243085-45243104 | None:intergenic | 45.0% |
| ! | CATTGCTGCATCCTTTGGAA+TGG | - | chr4.2:45244005-45244024 | MS.gene08732:CDS | 45.0% |
| ! | TAATGGTACTGCTGCTGGTT+GGG | - | chr4.2:45243264-45243283 | MS.gene08732:CDS | 45.0% |
| !! | CTTGGTGCTTTGCAGAAGAA+GGG | - | chr4.2:45243463-45243482 | MS.gene08732:intron | 45.0% |
| !! | GAGAATAGTCGTTCTGAGAG+AGG | - | chr4.2:45244555-45244574 | MS.gene08732:CDS | 45.0% |
| AACCTCACGAAATCCGACGT+TGG | - | chr4.2:45242983-45243002 | MS.gene08732:CDS | 50.0% | |
| ACTGGTGCAGGTGGAAACTT+TGG | - | chr4.2:45244291-45244310 | MS.gene08732:CDS | 50.0% | |
| AGCTCCATGCATGGAGTAAC+TGG | - | chr4.2:45242731-45242750 | MS.gene08732:CDS | 50.0% | |
| ATAGTTGCTCGTCCATTCGG+CGG | - | chr4.2:45244033-45244052 | MS.gene08732:CDS | 50.0% | |
| CGTCGGATTTCGTGAGGTTA+AGG | + | chr4.2:45242982-45243001 | None:intergenic | 50.0% | |
| CTCTGGATCTTCCAAACCCT+AGG | - | chr4.2:45244111-45244130 | MS.gene08732:CDS | 50.0% | |
| CTTGTGCTCCAACTGAGAAG+AGG | + | chr4.2:45244200-45244219 | None:intergenic | 50.0% | |
| GATTATTCGGCATGCGAGGA+AGG | - | chr4.2:45244079-45244098 | MS.gene08732:CDS | 50.0% | |
| GCAAGATTATTCGGCATGCG+AGG | - | chr4.2:45244075-45244094 | MS.gene08732:CDS | 50.0% | |
| GCAGCATGTGGTGCAACATT+TGG | - | chr4.2:45244219-45244238 | MS.gene08732:CDS | 50.0% | |
| GCTGATATTGAGGGTTCACC+TGG | - | chr4.2:45242707-45242726 | MS.gene08732:CDS | 50.0% | |
| GTTGGGGTAATATGGGTGGT+GGG | - | chr4.2:45243281-45243300 | MS.gene08732:CDS | 50.0% | |
| TAAGGTTGTCCCGGATGATC+GGG | + | chr4.2:45242964-45242983 | None:intergenic | 50.0% | |
| TACCAACGTCGGATTTCGTG+AGG | + | chr4.2:45242988-45243007 | None:intergenic | 50.0% | |
| TCGTGAGGTTAAGGTTGTCC+CGG | + | chr4.2:45242973-45242992 | None:intergenic | 50.0% | |
| TCTGATGCATATCCGCCGAA+TGG | + | chr4.2:45244048-45244067 | None:intergenic | 50.0% | |
| TGGATCTTCCAAACCCTAGG+AGG | - | chr4.2:45244114-45244133 | MS.gene08732:CDS | 50.0% | |
| TTGGGGTAATATGGGTGGTG+GGG | - | chr4.2:45243282-45243301 | MS.gene08732:CDS | 50.0% | |
| ! | AATGGTACTGCTGCTGGTTG+GGG | - | chr4.2:45243265-45243284 | MS.gene08732:CDS | 50.0% |
| ! | CCTTCTTCTGCAAAGCACCA+AGG | + | chr4.2:45243465-45243484 | None:intergenic | 50.0% |
| ! | GCAGGTGGAAACTTTGGTTC+CGG | - | chr4.2:45244297-45244316 | MS.gene08732:CDS | 50.0% |
| ! | GCTGCTGGTTGGGGTAATAT+GGG | - | chr4.2:45243274-45243293 | MS.gene08732:CDS | 50.0% |
| ! | GTGCTACTCCTTTCACTGCT+TGG | - | chr4.2:45243353-45243372 | MS.gene08732:intron | 50.0% |
| ! | TGCTGCTGGTTGGGGTAATA+TGG | - | chr4.2:45243273-45243292 | MS.gene08732:CDS | 50.0% |
| ! | TTCTGAGAGAGGAAAGCGTG+TGG | - | chr4.2:45244566-45244585 | MS.gene08732:CDS | 50.0% |
| !! | AAATCCGACGTTGGTAACGC+TGG | - | chr4.2:45242992-45243011 | MS.gene08732:CDS | 50.0% |
| !! | CCTTGGTGCTTTGCAGAAGA+AGG | - | chr4.2:45243462-45243481 | MS.gene08732:intron | 50.0% |
| ACTCCATGCATGGAGCTTCC+AGG | + | chr4.2:45242728-45242747 | None:intergenic | 55.0% | |
| AGGAACATGCTACCCCACTG+TGG | + | chr4.2:45244435-45244454 | None:intergenic | 55.0% | |
| CGCCATTAGTCCCGATCATC+CGG | - | chr4.2:45242951-45242970 | MS.gene08732:CDS | 55.0% | |
| GACTCCAGCGTTACCAACGT+CGG | + | chr4.2:45242999-45243018 | None:intergenic | 55.0% | |
| GAGGAAGGCTATGGACACTC+TGG | - | chr4.2:45244094-45244113 | MS.gene08732:CDS | 55.0% | |
| GCCATTAGTCCCGATCATCC+GGG | - | chr4.2:45242952-45242971 | MS.gene08732:CDS | 55.0% | |
| GCTGGTTGGGGTAATATGGG+TGG | - | chr4.2:45243277-45243296 | MS.gene08732:CDS | 55.0% | |
| GGTTGGGGTAATATGGGTGG+TGG | - | chr4.2:45243280-45243299 | MS.gene08732:CDS | 55.0% | |
| GTTGGAGCACAAGCAGCATG+TGG | - | chr4.2:45244207-45244226 | MS.gene08732:CDS | 55.0% | |
| TCACCTGGAAGCTCCATGCA+TGG | - | chr4.2:45242722-45242741 | MS.gene08732:CDS | 55.0% | |
| TCAGGCTTAACTGGTGCAGG+TGG | - | chr4.2:45244282-45244301 | MS.gene08732:CDS | 55.0% | |
| TCCCGGATGATCGGGACTAA+TGG | + | chr4.2:45242956-45242975 | None:intergenic | 55.0% | |
| ! | TGGTAACGCTGGAGTCGCTT+CGG | - | chr4.2:45243003-45243022 | MS.gene08732:CDS | 55.0% |
| GCTGGAGTCGCTTCGGTTTC+AGG | - | chr4.2:45243010-45243029 | MS.gene08732:CDS | 60.0% | |
| TCGGCATGCGAGGAAGGCTA+TGG | - | chr4.2:45244085-45244104 | MS.gene08732:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 45242704 | 45244629 | 45242704 | ID=MS.gene08732 |
| chr4.2 | mRNA | 45242704 | 45244629 | 45242704 | ID=MS.gene08732.t1;Parent=MS.gene08732 |
| chr4.2 | exon | 45243820 | 45244629 | 45243820 | ID=MS.gene08732.t1.exon1;Parent=MS.gene08732.t1 |
| chr4.2 | CDS | 45243820 | 45244629 | 45243820 | ID=cds.MS.gene08732.t1;Parent=MS.gene08732.t1 |
| chr4.2 | exon | 45243579 | 45243694 | 45243579 | ID=MS.gene08732.t1.exon2;Parent=MS.gene08732.t1 |
| chr4.2 | CDS | 45243579 | 45243694 | 45243579 | ID=cds.MS.gene08732.t1;Parent=MS.gene08732.t1 |
| chr4.2 | exon | 45242704 | 45243358 | 45242704 | ID=MS.gene08732.t1.exon3;Parent=MS.gene08732.t1 |
| chr4.2 | CDS | 45242704 | 45243358 | 45242704 | ID=cds.MS.gene08732.t1;Parent=MS.gene08732.t1 |
| Gene Sequence |
| Protein sequence |
