Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007705.t1 | XP_013455976.1 | 98.9 | 526 | 6 | 0 | 1 | 526 | 1 | 526 | 8.20E-300 | 1038.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007705.t1 | O82811 | 78.8 | 529 | 109 | 1 | 1 | 526 | 1 | 529 | 3.1e-247 | 855.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007705.t1 | G7IRD1 | 98.9 | 526 | 6 | 0 | 1 | 526 | 1 | 526 | 5.9e-300 | 1038.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08732 | MS.gene007705 | PPI |
| MS.gene067952 | MS.gene007705 | PPI |
| MS.gene056444 | MS.gene007705 | PPI |
| MS.gene007705 | MS.gene050095 | PPI |
| MS.gene08666 | MS.gene007705 | PPI |
| MS.gene97933 | MS.gene007705 | PPI |
| MS.gene007705 | MS.gene050096 | PPI |
| MS.gene007705 | MS.gene008847 | PPI |
| MS.gene08733 | MS.gene007705 | PPI |
| MS.gene007704 | MS.gene007705 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007705.t1 | MTR_4g057890 | 98.859 | 526 | 6 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1069 |
| MS.gene007705.t1 | MTR_4g057865 | 98.669 | 526 | 7 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1068 |
| MS.gene007705.t1 | MTR_8g069775 | 61.554 | 489 | 186 | 2 | 38 | 524 | 18 | 506 | 0.0 | 590 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007705.t1 | AT1G08090 | 78.828 | 529 | 109 | 1 | 1 | 526 | 1 | 529 | 0.0 | 881 |
| MS.gene007705.t1 | AT5G60770 | 79.017 | 529 | 105 | 2 | 1 | 526 | 1 | 526 | 0.0 | 877 |
| MS.gene007705.t1 | AT1G08100 | 74.855 | 517 | 127 | 2 | 7 | 521 | 6 | 521 | 0.0 | 818 |
| MS.gene007705.t1 | AT5G60780 | 73.171 | 533 | 135 | 3 | 2 | 526 | 6 | 538 | 0.0 | 794 |
| MS.gene007705.t1 | AT3G45060 | 72.097 | 534 | 136 | 4 | 5 | 526 | 9 | 541 | 0.0 | 780 |
| MS.gene007705.t1 | AT1G12940 | 59.259 | 486 | 194 | 2 | 38 | 522 | 20 | 502 | 0.0 | 605 |
| MS.gene007705.t1 | AT5G14570 | 48.511 | 470 | 220 | 4 | 41 | 493 | 18 | 482 | 1.49e-151 | 443 |
Find 134 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATGTTATCATGGGTATTT+TGG | 0.143284 | 4.3:-43167172 | MS.gene007705:CDS |
| GCCGGAGTCGCTTCGGTTTC+AGG | 0.162646 | 4.3:-43167567 | MS.gene007705:CDS |
| TGCTGCTGGTTGGGGTAATA+TGG | 0.200878 | 4.3:-43167304 | MS.gene007705:CDS |
| ATCAACTGGTAATGCAAATT+TGG | 0.211102 | 4.3:+43167764 | None:intergenic |
| ATGTTTAATAGTAAAATTAT+TGG | 0.217642 | 4.3:-43167342 | MS.gene007705:CDS |
| AAAATTATTGGACTTGTAAA+TGG | 0.231743 | 4.3:-43167330 | MS.gene007705:CDS |
| ATTCATATCAAGAAGATCTT+TGG | 0.235165 | 4.3:-43166342 | MS.gene007705:CDS |
| CATTTGTTTCATGCCAATAT+TGG | 0.240129 | 4.3:-43167374 | MS.gene007705:CDS |
| GTTTGCATCAACCAAGTCTT+AGG | 0.268930 | 4.3:-43166067 | MS.gene007705:CDS |
| ACTGCTTTATGGTTACTCTA+TGG | 0.275641 | 4.3:-43166897 | MS.gene007705:CDS |
| CACTCAGCTTATTATGCCTT+TGG | 0.288791 | 4.3:-43167271 | MS.gene007705:CDS |
| GGAATCATTGCTGCATCCTT+TGG | 0.291659 | 4.3:-43166593 | MS.gene007705:CDS |
| CAACAGCTTCAGGTCTTTCA+TGG | 0.291908 | 4.3:-43166235 | MS.gene007705:CDS |
| CGTCGGATTTCGTGAGGTTA+AGG | 0.293043 | 4.3:+43167598 | None:intergenic |
| GTTTATGATTGGTTTCTCTT+TGG | 0.307610 | 4.3:-43167400 | MS.gene007705:CDS |
| AGATCTTTGGGAATTATATC+AGG | 0.310342 | 4.3:-43166329 | MS.gene007705:CDS |
| AAATGGTACTGCTGCTGGTT+GGG | 0.317688 | 4.3:-43167313 | MS.gene007705:CDS |
| GATGTTGCAGCAAGATTATT+CGG | 0.318773 | 4.3:-43166527 | MS.gene007705:CDS |
| GGAATTATATCAGGTTTAAC+TGG | 0.331122 | 4.3:-43166320 | MS.gene007705:CDS |
| CCATGTCCTGTAATTTGTTA+TGG | 0.341386 | 4.3:+43166928 | None:intergenic |
| TGAAAAGAGTTTGAAAACTT+TGG | 0.345000 | 4.3:+43167728 | None:intergenic |
| GGTGCAATTTGTGACCTATT+AGG | 0.354243 | 4.3:-43167519 | MS.gene007705:CDS |
| TTCCAGCTGTGTGTAGCTTT+AGG | 0.354844 | 4.3:+43166612 | None:intergenic |
| TCATTTGTTGAAAATGCTTC+TGG | 0.358655 | 4.3:-43167438 | MS.gene007705:CDS |
| CGCCATTAGTCCCGATCATC+CGG | 0.360837 | 4.3:-43167626 | MS.gene007705:CDS |
| ACATAGTACTCATCCAATAT+TGG | 0.362676 | 4.3:+43167361 | None:intergenic |
| AGAATGATATCCATGATAAA+TGG | 0.376569 | 4.3:+43167679 | None:intergenic |
| GCAGCATGTGGTGCAACATT+TGG | 0.378132 | 4.3:-43166374 | MS.gene007705:CDS |
| CTTCTGGTTATATAGCAGTT+AGG | 0.379548 | 4.3:-43167422 | MS.gene007705:CDS |
| TGGTTGGTTGCATGTTATCA+TGG | 0.382144 | 4.3:-43167181 | MS.gene007705:CDS |
| GTGCTACTCCTTTCACTGCT+TGG | 0.383160 | 4.3:-43167224 | MS.gene007705:CDS |
| TTCATATCAAGAAGATCTTT+GGG | 0.385193 | 4.3:-43166341 | MS.gene007705:CDS |
| TAGTGGGTAGGAGTTGTATT+TGG | 0.393817 | 4.3:+43165987 | None:intergenic |
| ACTCCATGCATGGAGCTTCC+TGG | 0.398240 | 4.3:+43167852 | None:intergenic |
| GGTTGGGGTAATATGGGTGG+TGG | 0.398747 | 4.3:-43167297 | MS.gene007705:CDS |
| AGCTCCATGCATGGAGTGAC+TGG | 0.401149 | 4.3:-43167846 | MS.gene007705:CDS |
| GCAGGCGGAAACTTTGGTTC+AGG | 0.403944 | 4.3:-43166296 | MS.gene007705:CDS |
| AACTTAGTTGCTCGTCCATT+CGG | 0.406657 | 4.3:-43166563 | MS.gene007705:CDS |
| AACCATAACGTGGACCTAAT+AGG | 0.411808 | 4.3:+43167505 | None:intergenic |
| GCTGCTGGTTGGGGTAATAT+GGG | 0.417787 | 4.3:-43167303 | MS.gene007705:CDS |
| GGTATGCCATAACAAATTAC+AGG | 0.421451 | 4.3:-43166934 | MS.gene007705:CDS |
| TCGGCATGCGAGGAAGACTA+TGG | 0.425122 | 4.3:-43166508 | MS.gene007705:CDS |
| GTTGGGGTAATATGGGTGGT+GGG | 0.435234 | 4.3:-43167296 | MS.gene007705:CDS |
| ATAGCAGTTAGGTTTATGAT+TGG | 0.436014 | 4.3:-43167411 | MS.gene007705:CDS |
| CTGCTTTATGGTTACTCTAT+GGG | 0.436463 | 4.3:-43166896 | MS.gene007705:CDS |
| TGGATGGGTGCAATGATTGT+TGG | 0.437054 | 4.3:-43166215 | MS.gene007705:CDS |
| AGAATACTCCACCTAGGGTT+TGG | 0.437320 | 4.3:+43166471 | None:intergenic |
| TATAACAATGGCTGATATTG+AGG | 0.442270 | 4.3:-43167880 | None:intergenic |
| AAAGATCTTCTTGATATGAA+TGG | 0.444365 | 4.3:+43166344 | None:intergenic |
| ACTGGTGCAGGCGGAAACTT+TGG | 0.446934 | 4.3:-43166302 | MS.gene007705:CDS |
| GACCTATTAGGTCCACGTTA+TGG | 0.448846 | 4.3:-43167507 | MS.gene007705:CDS |
| AACATTACCCTTCTTCTGTA+AGG | 0.451966 | 4.3:+43167107 | None:intergenic |
| GGAAAATGAACAAATGCAAC+AGG | 0.456403 | 4.3:+43166182 | None:intergenic |
| TGAGAACCTTCCATTTATCA+TGG | 0.456413 | 4.3:-43167689 | MS.gene007705:CDS |
| AGCTTCAGGTCTTTCATGGA+TGG | 0.465615 | 4.3:-43166231 | MS.gene007705:CDS |
| ATATCAGGTTTAACTGGTGC+AGG | 0.468566 | 4.3:-43166314 | MS.gene007705:CDS |
| TAAGGTTGTCCCGGATGATC+GGG | 0.469055 | 4.3:+43167616 | None:intergenic |
| TTGCTGAGTATTTCTATGAC+AGG | 0.469828 | 4.3:-43166847 | MS.gene007705:intron |
| AACACTATTACACTTCTGAA+TGG | 0.470788 | 4.3:-43166112 | MS.gene007705:CDS |
| TGGTAACGCCGGAGTCGCTT+CGG | 0.471102 | 4.3:-43167574 | MS.gene007705:CDS |
| GGAGTATTCTGCATATGGTT+AGG | 0.473204 | 4.3:-43166458 | MS.gene007705:CDS |
| GGTTACCATCAGGTAAATCT+TGG | 0.480850 | 4.3:+43167136 | None:intergenic |
| GCTGATATTGAGGGTTCACC+AGG | 0.480863 | 4.3:-43167870 | MS.gene007705:CDS |
| TCCCGGATGATCGGGACTAA+TGG | 0.482655 | 4.3:+43167624 | None:intergenic |
| CTTGTAAATGGTACTGCTGC+TGG | 0.488890 | 4.3:-43167318 | MS.gene007705:CDS |
| AATGGTACTGCTGCTGGTTG+GGG | 0.493227 | 4.3:-43167312 | MS.gene007705:CDS |
| TCTTCCAGTCACTCCATGCA+TGG | 0.494400 | 4.3:+43167842 | None:intergenic |
| CCTTGGTGCCTTACAGAAGA+AGG | 0.498271 | 4.3:-43167115 | MS.gene007705:CDS |
| TATGAGTTGATTAGAAGAGC+TGG | 0.499381 | 4.3:-43167246 | MS.gene007705:CDS |
| CCATAACAAATTACAGGACA+TGG | 0.502596 | 4.3:-43166928 | MS.gene007705:CDS |
| TAAATGGTACTGCTGCTGGT+TGG | 0.504033 | 4.3:-43167314 | MS.gene007705:CDS |
| TTGGGGTAATATGGGTGGTG+GGG | 0.507796 | 4.3:-43167295 | MS.gene007705:CDS |
| AACCTAAAGCTACACACAGC+TGG | 0.512286 | 4.3:-43166614 | MS.gene007705:CDS |
| TCGTGAGGTTAAGGTTGTCC+CGG | 0.513783 | 4.3:+43167607 | None:intergenic |
| TTAAGGTTGTCCCGGATGAT+CGG | 0.515983 | 4.3:+43167615 | None:intergenic |
| TAGGTGGAGTATTCTGCATA+TGG | 0.519890 | 4.3:-43166463 | MS.gene007705:CDS |
| GTGGTATCAGTTGGAACCAT+TGG | 0.524676 | 4.3:+43167789 | None:intergenic |
| GATTTGTGTTCAGAATCAAC+TGG | 0.525048 | 4.3:+43167750 | None:intergenic |
| TCAATGATCCTCTTCTCAGT+TGG | 0.538507 | 4.3:-43166404 | MS.gene007705:CDS |
| GATTTACCTGATGGTAACCT+TGG | 0.538623 | 4.3:-43167132 | MS.gene007705:CDS |
| GTCATCAGTTGCTTCACCAA+TGG | 0.548350 | 4.3:-43167805 | MS.gene007705:CDS |
| CATTGCTGCATCCTTTGGAA+TGG | 0.548449 | 4.3:-43166588 | MS.gene007705:CDS |
| TTCTCAGCAAACCTAAGACT+TGG | 0.549078 | 4.3:+43166056 | None:intergenic |
| GGTTGGTTGCATGTTATCAT+GGG | 0.550695 | 4.3:-43167180 | MS.gene007705:CDS |
| GCTTCAGGTCTTTCATGGAT+GGG | 0.552112 | 4.3:-43166230 | MS.gene007705:CDS |
| ATAACAATGGCTGATATTGA+GGG | 0.552556 | 4.3:-43167879 | None:intergenic |
| ATGATAACATGCAACCAACC+AGG | 0.556711 | 4.3:+43167183 | None:intergenic |
| CTTGTGCTCCAACTGAGAAG+AGG | 0.561854 | 4.3:+43166396 | None:intergenic |
| GGCATATAACTTGTACTAGT+GGG | 0.562820 | 4.3:+43165971 | None:intergenic |
| TGGGTAGGAGTTGTATTTGG+TGG | 0.563220 | 4.3:+43165990 | None:intergenic |
| ACCTGAAACCGAAGCGACTC+CGG | 0.567599 | 4.3:+43167566 | None:intergenic |
| TCTGATGCATAACCGCCGAA+TGG | 0.569739 | 4.3:+43166548 | None:intergenic |
| TTAGTTGCTCGTCCATTCGG+CGG | 0.569840 | 4.3:-43166560 | MS.gene007705:CDS |
| AATTTGGCTGTGGTATCAGT+TGG | 0.576596 | 4.3:+43167780 | None:intergenic |
| GCAATTCTCCAAGCAGTGAA+AGG | 0.578221 | 4.3:+43167216 | None:intergenic |
| GAGAATAGTCGTTCTGAGAG+AGG | 0.578576 | 4.3:-43166038 | MS.gene007705:CDS |
| AATGAAGATGAAGTACAGAA+AGG | 0.578938 | 4.3:-43166089 | MS.gene007705:CDS |
| ATCATTGATAGTACTGCGAT+CGG | 0.578966 | 4.3:+43166419 | None:intergenic |
| TTGGTGCTGTTAGCATGATA+AGG | 0.579781 | 4.3:+43167475 | None:intergenic |
| AACTAAGTTTGCCATTCCAA+AGG | 0.580941 | 4.3:+43166577 | None:intergenic |
| AATGACATACAAAACACTGT+TGG | 0.582355 | 4.3:+43167456 | None:intergenic |
| TCACCAGGAAGCTCCATGCA+TGG | 0.586180 | 4.3:-43167855 | MS.gene007705:CDS |
| AAATGGAAGGTTCTCATGTG+AGG | 0.586590 | 4.3:+43167696 | None:intergenic |
| CCTTCTTCTGTAAGGCACCA+AGG | 0.586854 | 4.3:+43167115 | None:intergenic |
| AAGGCACCAAGGTTACCATC+AGG | 0.593630 | 4.3:+43167126 | None:intergenic |
| TTAGGCCAAGATTTACCTGA+TGG | 0.597509 | 4.3:-43167141 | MS.gene007705:CDS |
| CTAATCAACTCATAAACCAA+AGG | 0.598634 | 4.3:+43167255 | None:intergenic |
| TACCAACGTCGGATTTCGTG+AGG | 0.605986 | 4.3:+43167592 | None:intergenic |
| TATAACTTGTACTAGTGGGT+AGG | 0.614728 | 4.3:+43165975 | None:intergenic |
| AATGGAAGGTTCTCATGTGA+GGG | 0.615898 | 4.3:+43167697 | None:intergenic |
| GCCATTAGTCCCGATCATCC+GGG | 0.620270 | 4.3:-43167625 | MS.gene007705:CDS |
| TGGATCTTCCAAACCCTAGG+TGG | 0.623341 | 4.3:-43166479 | MS.gene007705:CDS |
| TGAAGCAACTGATGACATGA+AGG | 0.627231 | 4.3:+43167812 | None:intergenic |
| GCTGGTTGGGGTAATATGGG+TGG | 0.628336 | 4.3:-43167300 | MS.gene007705:CDS |
| TGATATCCATGATAAATGGA+AGG | 0.629428 | 4.3:+43167683 | None:intergenic |
| CTTGGTGCCTTACAGAAGAA+GGG | 0.632453 | 4.3:-43167114 | MS.gene007705:CDS |
| GAGGAAGACTATGGACACTC+TGG | 0.635045 | 4.3:-43166499 | MS.gene007705:CDS |
| GCAAGATTATTCGGCATGCG+AGG | 0.636291 | 4.3:-43166518 | MS.gene007705:CDS |
| TGGTAATGCAAATTTGGCTG+TGG | 0.639028 | 4.3:+43167770 | None:intergenic |
| CTCTGGATCTTCCAAACCCT+AGG | 0.639945 | 4.3:-43166482 | MS.gene007705:CDS |
| TATGCAGAATACTCCACCTA+GGG | 0.642508 | 4.3:+43166466 | None:intergenic |
| CTCAGCAATGACATTGTCAG+TGG | 0.646298 | 4.3:+43166862 | None:intergenic |
| TGATAACATGCAACCAACCA+GGG | 0.648113 | 4.3:+43167184 | None:intergenic |
| ATATGCAGAATACTCCACCT+AGG | 0.648525 | 4.3:+43166465 | None:intergenic |
| AAATCCGACGTTGGTAACGC+CGG | 0.653244 | 4.3:-43167585 | MS.gene007705:CDS |
| TCAGGTTTAACTGGTGCAGG+CGG | 0.659468 | 4.3:-43166311 | MS.gene007705:CDS |
| GTTGGAGCACAAGCAGCATG+TGG | 0.659585 | 4.3:-43166386 | MS.gene007705:CDS |
| TGCTAAAGACAAGTTCACAA+AGG | 0.663793 | 4.3:-43167085 | MS.gene007705:intron |
| TTCTGAGAGAGGAAAGCGTG+TGG | 0.674767 | 4.3:-43166027 | MS.gene007705:CDS |
| AACCTCACGAAATCCGACGT+TGG | 0.679989 | 4.3:-43167594 | MS.gene007705:CDS |
| CAAAGGCATAATAAGCTGAG+TGG | 0.686072 | 4.3:+43167272 | None:intergenic |
| AGGAAAGCACAACCATAACG+TGG | 0.709978 | 4.3:+43167495 | None:intergenic |
| AGAAACATGCTACCCCACTG+TGG | 0.723247 | 4.3:+43166161 | None:intergenic |
| GACTCCGGCGTTACCAACGT+CGG | 0.726114 | 4.3:+43167581 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTTTAATAGTAAAATTAT+TGG | - | chr4.3:43166517-43166536 | MS.gene007705:CDS | 10.0% |
| !! | TCTAATGAATTAAATAAAAC+AGG | - | chr4.3:43167219-43167238 | MS.gene007705:CDS | 15.0% |
| !!! | CACAATTTAAAATTATAATC+TGG | - | chr4.3:43167129-43167148 | MS.gene007705:CDS | 15.0% |
| !!! | CAGATTATAATTTTAAATTG+TGG | + | chr4.3:43167131-43167150 | None:intergenic | 15.0% |
| !! | AAAATTATTGGACTTGTAAA+TGG | - | chr4.3:43166529-43166548 | MS.gene007705:CDS | 20.0% |
| !!! | ACAAACTTTTTAAAAAACCT+AGG | - | chr4.3:43167161-43167180 | MS.gene007705:CDS | 20.0% |
| !!! | GATTATGATTTTTTTTCTTC+AGG | - | chr4.3:43166896-43166915 | MS.gene007705:CDS | 20.0% |
| ! | AAAGATCTTCTTGATATGAA+TGG | + | chr4.3:43167518-43167537 | None:intergenic | 25.0% |
| ! | AGAATGATATCCATGATAAA+TGG | + | chr4.3:43166183-43166202 | None:intergenic | 25.0% |
| ! | ATTCATATCAAGAAGATCTT+TGG | - | chr4.3:43167517-43167536 | MS.gene007705:CDS | 25.0% |
| ! | CTAGTTAGTCACTTAATTTA+AGG | - | chr4.3:43166804-43166823 | MS.gene007705:intron | 25.0% |
| ! | GTAGATATATACAAATCTTG+AGG | + | chr4.3:43167072-43167091 | None:intergenic | 25.0% |
| ! | TGAAAAGAGTTTGAAAACTT+TGG | + | chr4.3:43166134-43166153 | None:intergenic | 25.0% |
| ! | TTCATATCAAGAAGATCTTT+GGG | - | chr4.3:43167518-43167537 | MS.gene007705:CDS | 25.0% |
| !! | AGTTTTCAAACTCTTTTCAA+TGG | - | chr4.3:43166135-43166154 | MS.gene007705:CDS | 25.0% |
| !!! | CTCATTGATTAATTGTTTTG+TGG | + | chr4.3:43166839-43166858 | None:intergenic | 25.0% |
| !!! | TTTTTTTTCTTCAGGTTTTG+TGG | - | chr4.3:43166904-43166923 | MS.gene007705:CDS | 25.0% |
| AAAAATTGTTAGTGTCTCCT+AGG | + | chr4.3:43167181-43167200 | None:intergenic | 30.0% | |
| AACACTATTACACTTCTGAA+TGG | - | chr4.3:43167747-43167766 | MS.gene007705:CDS | 30.0% | |
| AATGAAGATGAAGTACAGAA+AGG | - | chr4.3:43167770-43167789 | MS.gene007705:CDS | 30.0% | |
| AATGACATACAAAACACTGT+TGG | + | chr4.3:43166406-43166425 | None:intergenic | 30.0% | |
| ACATAGTACTCATCCAATAT+TGG | + | chr4.3:43166501-43166520 | None:intergenic | 30.0% | |
| ATAGCAGTTAGGTTTATGAT+TGG | - | chr4.3:43166448-43166467 | MS.gene007705:CDS | 30.0% | |
| CATTTGTTTCATGCCAATAT+TGG | - | chr4.3:43166485-43166504 | MS.gene007705:CDS | 30.0% | |
| CTAATCAACTCATAAACCAA+AGG | + | chr4.3:43166607-43166626 | None:intergenic | 30.0% | |
| GGAATTATATCAGGTTTAAC+TGG | - | chr4.3:43167539-43167558 | MS.gene007705:CDS | 30.0% | |
| TGATATCCATGATAAATGGA+AGG | + | chr4.3:43166179-43166198 | None:intergenic | 30.0% | |
| ! | AGATCTTTGGGAATTATATC+AGG | - | chr4.3:43167530-43167549 | MS.gene007705:CDS | 30.0% |
| ! | ATCAACTGGTAATGCAAATT+TGG | + | chr4.3:43166098-43166117 | None:intergenic | 30.0% |
| ! | ATTTGTTCATTTTCCACAGT+GGG | - | chr4.3:43167685-43167704 | MS.gene007705:CDS | 30.0% |
| ! | TCAAAATTTTCAACAGCTTC+AGG | - | chr4.3:43167614-43167633 | MS.gene007705:CDS | 30.0% |
| ! | TCATTTGTTGAAAATGCTTC+TGG | - | chr4.3:43166421-43166440 | MS.gene007705:CDS | 30.0% |
| ! | TCTTCATTGATCTCTTTTGA+AGG | + | chr4.3:43167728-43167747 | None:intergenic | 30.0% |
| !! | GTTTATGATTGGTTTCTCTT+TGG | - | chr4.3:43166459-43166478 | MS.gene007705:CDS | 30.0% |
| !! | TTTCAGGTAGTATTTTCTCA+AGG | - | chr4.3:43166308-43166327 | MS.gene007705:CDS | 30.0% |
| !!! | GGTATTTTGGTCTTAACATT+AGG | - | chr4.3:43166700-43166719 | MS.gene007705:intron | 30.0% |
| AACATTACCCTTCTTCTGTA+AGG | + | chr4.3:43166755-43166774 | None:intergenic | 35.0% | |
| AACTAAGTTTGCCATTCCAA+AGG | + | chr4.3:43167285-43167304 | None:intergenic | 35.0% | |
| ACTGCTTTATGGTTACTCTA+TGG | - | chr4.3:43166962-43166981 | MS.gene007705:intron | 35.0% | |
| CCATAACAAATTACAGGACA+TGG | - | chr4.3:43166931-43166950 | MS.gene007705:CDS | 35.0% | |
| CTGCTTTATGGTTACTCTAT+GGG | - | chr4.3:43166963-43166982 | MS.gene007705:intron | 35.0% | |
| GATGTTGCAGCAAGATTATT+CGG | - | chr4.3:43167332-43167351 | MS.gene007705:CDS | 35.0% | |
| GATTTGTGTTCAGAATCAAC+TGG | + | chr4.3:43166112-43166131 | None:intergenic | 35.0% | |
| GGAAAATGAACAAATGCAAC+AGG | + | chr4.3:43167680-43167699 | None:intergenic | 35.0% | |
| GGTATGCCATAACAAATTAC+AGG | - | chr4.3:43166925-43166944 | MS.gene007705:CDS | 35.0% | |
| TGAGAACCTTCCATTTATCA+TGG | - | chr4.3:43166170-43166189 | MS.gene007705:CDS | 35.0% | |
| TGCTAAAGACAAGTTCACAA+AGG | - | chr4.3:43166774-43166793 | MS.gene007705:intron | 35.0% | |
| TTAAATTGCAACTGCAGTTG+CGG | - | chr4.3:43167104-43167123 | MS.gene007705:CDS | 35.0% | |
| ! | ATCATTGATAGTACTGCGAT+CGG | + | chr4.3:43167443-43167462 | None:intergenic | 35.0% |
| ! | ATTTTCTCAAGGCTTGCAAT+GGG | - | chr4.3:43166319-43166338 | MS.gene007705:CDS | 35.0% |
| ! | CATTTGTTCATTTTCCACAG+TGG | - | chr4.3:43167684-43167703 | MS.gene007705:CDS | 35.0% |
| ! | CTTCTGGTTATATAGCAGTT+AGG | - | chr4.3:43166437-43166456 | MS.gene007705:CDS | 35.0% |
| ! | GCATGTTATCATGGGTATTT+TGG | - | chr4.3:43166687-43166706 | MS.gene007705:intron | 35.0% |
| ! | TATTTTCTCAAGGCTTGCAA+TGG | - | chr4.3:43166318-43166337 | MS.gene007705:CDS | 35.0% |
| ! | TGGATTTTTGCACTGCTTTA+TGG | - | chr4.3:43166951-43166970 | MS.gene007705:intron | 35.0% |
| ! | TTGCTGAGTATTTCTATGAC+AGG | - | chr4.3:43167012-43167031 | MS.gene007705:intron | 35.0% |
| ! | TTTGTTCATTTTCCACAGTG+GGG | - | chr4.3:43167686-43167705 | MS.gene007705:CDS | 35.0% |
| !! | CCATGTCCTGTAATTTGTTA+TGG | + | chr4.3:43166934-43166953 | None:intergenic | 35.0% |
| !! | TATGAGTTGATTAGAAGAGC+TGG | - | chr4.3:43166613-43166632 | MS.gene007705:CDS | 35.0% |
| !! | TCATTGATCTCTTTTGAAGG+TGG | + | chr4.3:43167725-43167744 | None:intergenic | 35.0% |
| !!! | AGAATTGCCTTTTTTATCCC+TGG | - | chr4.3:43166658-43166677 | MS.gene007705:intron | 35.0% |
| AAATGGAAGGTTCTCATGTG+AGG | + | chr4.3:43166166-43166185 | None:intergenic | 40.0% | |
| AACCATAACGTGGACCTAAT+AGG | + | chr4.3:43166357-43166376 | None:intergenic | 40.0% | |
| AACTTAGTTGCTCGTCCATT+CGG | - | chr4.3:43167296-43167315 | MS.gene007705:CDS | 40.0% | |
| AATGGAAGGTTCTCATGTGA+GGG | + | chr4.3:43166165-43166184 | None:intergenic | 40.0% | |
| AATTTGGCTGTGGTATCAGT+TGG | + | chr4.3:43166082-43166101 | None:intergenic | 40.0% | |
| ATATCAGGTTTAACTGGTGC+AGG | - | chr4.3:43167545-43167564 | MS.gene007705:CDS | 40.0% | |
| ATATGCAGAATACTCCACCT+AGG | + | chr4.3:43167397-43167416 | None:intergenic | 40.0% | |
| ATGATAACATGCAACCAACC+AGG | + | chr4.3:43166679-43166698 | None:intergenic | 40.0% | |
| CAACCAACCAGGGATAAAAA+AGG | + | chr4.3:43166668-43166687 | None:intergenic | 40.0% | |
| CACTCAGCTTATTATGCCTT+TGG | - | chr4.3:43166588-43166607 | MS.gene007705:CDS | 40.0% | |
| GATTTACCTGATGGTAACCT+TGG | - | chr4.3:43166727-43166746 | MS.gene007705:intron | 40.0% | |
| GGTGCAATTTGTGACCTATT+AGG | - | chr4.3:43166340-43166359 | MS.gene007705:CDS | 40.0% | |
| GGTTACCATCAGGTAAATCT+TGG | + | chr4.3:43166726-43166745 | None:intergenic | 40.0% | |
| GTTTGCATCAACCAAGTCTT+AGG | - | chr4.3:43167792-43167811 | MS.gene007705:CDS | 40.0% | |
| TATGCAGAATACTCCACCTA+GGG | + | chr4.3:43167396-43167415 | None:intergenic | 40.0% | |
| TCAATGATCCTCTTCTCAGT+TGG | - | chr4.3:43167455-43167474 | MS.gene007705:CDS | 40.0% | |
| TGAAGCAACTGATGACATGA+AGG | + | chr4.3:43166050-43166069 | None:intergenic | 40.0% | |
| TGATAACATGCAACCAACCA+GGG | + | chr4.3:43166678-43166697 | None:intergenic | 40.0% | |
| TTAGGCCAAGATTTACCTGA+TGG | - | chr4.3:43166718-43166737 | MS.gene007705:intron | 40.0% | |
| TTCTCAGCAAACCTAAGACT+TGG | + | chr4.3:43167806-43167825 | None:intergenic | 40.0% | |
| ! | CAAAGGCATAATAAGCTGAG+TGG | + | chr4.3:43166590-43166609 | None:intergenic | 40.0% |
| ! | GGAGTATTCTGCATATGGTT+AGG | - | chr4.3:43167401-43167420 | MS.gene007705:CDS | 40.0% |
| ! | GGTTGGTTGCATGTTATCAT+GGG | - | chr4.3:43166679-43166698 | MS.gene007705:intron | 40.0% |
| ! | TAGGTGGAGTATTCTGCATA+TGG | - | chr4.3:43167396-43167415 | MS.gene007705:CDS | 40.0% |
| ! | TAGTGGGTAGGAGTTGTATT+TGG | + | chr4.3:43167875-43167894 | None:intergenic | 40.0% |
| ! | TGGTAATGCAAATTTGGCTG+TGG | + | chr4.3:43166092-43166111 | None:intergenic | 40.0% |
| ! | TGGTTGGTTGCATGTTATCA+TGG | - | chr4.3:43166678-43166697 | MS.gene007705:intron | 40.0% |
| !! | TTGGTGCTGTTAGCATGATA+AGG | + | chr4.3:43166387-43166406 | None:intergenic | 40.0% |
| !!! | TTGCCTTTTTTATCCCTGGT+TGG | - | chr4.3:43166662-43166681 | MS.gene007705:intron | 40.0% |
| AACCTAAAGCTACACACAGC+TGG | - | chr4.3:43167245-43167264 | MS.gene007705:CDS | 45.0% | |
| AGAATACTCCACCTAGGGTT+TGG | + | chr4.3:43167391-43167410 | None:intergenic | 45.0% | |
| AGCTTCAGGTCTTTCATGGA+TGG | - | chr4.3:43167628-43167647 | MS.gene007705:CDS | 45.0% | |
| CAACAGCTTCAGGTCTTTCA+TGG | - | chr4.3:43167624-43167643 | MS.gene007705:CDS | 45.0% | |
| CTCAGCAATGACATTGTCAG+TGG | + | chr4.3:43167000-43167019 | None:intergenic | 45.0% | |
| CTTGTAAATGGTACTGCTGC+TGG | - | chr4.3:43166541-43166560 | MS.gene007705:CDS | 45.0% | |
| GACCTATTAGGTCCACGTTA+TGG | - | chr4.3:43166352-43166371 | MS.gene007705:CDS | 45.0% | |
| GCAATTCTCCAAGCAGTGAA+AGG | + | chr4.3:43166646-43166665 | None:intergenic | 45.0% | |
| GCTTCAGGTCTTTCATGGAT+GGG | - | chr4.3:43167629-43167648 | MS.gene007705:CDS | 45.0% | |
| GGAATCATTGCTGCATCCTT+TGG | - | chr4.3:43167266-43167285 | MS.gene007705:CDS | 45.0% | |
| GTCATCAGTTGCTTCACCAA+TGG | - | chr4.3:43166054-43166073 | MS.gene007705:CDS | 45.0% | |
| GTGGTATCAGTTGGAACCAT+TGG | + | chr4.3:43166073-43166092 | None:intergenic | 45.0% | |
| TAAATGGTACTGCTGCTGGT+TGG | - | chr4.3:43166545-43166564 | MS.gene007705:CDS | 45.0% | |
| TGGATGGGTGCAATGATTGT+TGG | - | chr4.3:43167644-43167663 | MS.gene007705:CDS | 45.0% | |
| TGGGTAGGAGTTGTATTTGG+TGG | + | chr4.3:43167872-43167891 | None:intergenic | 45.0% | |
| TTAAGGTTGTCCCGGATGAT+CGG | + | chr4.3:43166247-43166266 | None:intergenic | 45.0% | |
| TTCCAGCTGTGTGTAGCTTT+AGG | + | chr4.3:43167250-43167269 | None:intergenic | 45.0% | |
| ! | AAATGGTACTGCTGCTGGTT+GGG | - | chr4.3:43166546-43166565 | MS.gene007705:CDS | 45.0% |
| ! | AGGAAAGCACAACCATAACG+TGG | + | chr4.3:43166367-43166386 | None:intergenic | 45.0% |
| ! | CATTGCTGCATCCTTTGGAA+TGG | - | chr4.3:43167271-43167290 | MS.gene007705:CDS | 45.0% |
| !! | CTTGGTGCCTTACAGAAGAA+GGG | - | chr4.3:43166745-43166764 | MS.gene007705:intron | 45.0% |
| !! | GAGAATAGTCGTTCTGAGAG+AGG | - | chr4.3:43167821-43167840 | MS.gene007705:CDS | 45.0% |
| AACCTCACGAAATCCGACGT+TGG | - | chr4.3:43166265-43166284 | MS.gene007705:CDS | 50.0% | |
| AGAAACATGCTACCCCACTG+TGG | + | chr4.3:43167701-43167720 | None:intergenic | 50.0% | |
| CGTCGGATTTCGTGAGGTTA+AGG | + | chr4.3:43166264-43166283 | None:intergenic | 50.0% | |
| CTCTGGATCTTCCAAACCCT+AGG | - | chr4.3:43167377-43167396 | MS.gene007705:CDS | 50.0% | |
| CTTGTGCTCCAACTGAGAAG+AGG | + | chr4.3:43167466-43167485 | None:intergenic | 50.0% | |
| GAGGAAGACTATGGACACTC+TGG | - | chr4.3:43167360-43167379 | MS.gene007705:CDS | 50.0% | |
| GCAAGATTATTCGGCATGCG+AGG | - | chr4.3:43167341-43167360 | MS.gene007705:CDS | 50.0% | |
| GCAGCATGTGGTGCAACATT+TGG | - | chr4.3:43167485-43167504 | MS.gene007705:CDS | 50.0% | |
| GCTGATATTGAGGGTTCACC+AGG | - | chr4.3:43165989-43166008 | MS.gene007705:CDS | 50.0% | |
| GTTGGGGTAATATGGGTGGT+GGG | - | chr4.3:43166563-43166582 | MS.gene007705:CDS | 50.0% | |
| TAAGGTTGTCCCGGATGATC+GGG | + | chr4.3:43166246-43166265 | None:intergenic | 50.0% | |
| TACCAACGTCGGATTTCGTG+AGG | + | chr4.3:43166270-43166289 | None:intergenic | 50.0% | |
| TCAGGTTTAACTGGTGCAGG+CGG | - | chr4.3:43167548-43167567 | MS.gene007705:CDS | 50.0% | |
| TCGTGAGGTTAAGGTTGTCC+CGG | + | chr4.3:43166255-43166274 | None:intergenic | 50.0% | |
| TCTGATGCATAACCGCCGAA+TGG | + | chr4.3:43167314-43167333 | None:intergenic | 50.0% | |
| TCTTCCAGTCACTCCATGCA+TGG | + | chr4.3:43166020-43166039 | None:intergenic | 50.0% | |
| TGGATCTTCCAAACCCTAGG+TGG | - | chr4.3:43167380-43167399 | MS.gene007705:CDS | 50.0% | |
| TTAGTTGCTCGTCCATTCGG+CGG | - | chr4.3:43167299-43167318 | MS.gene007705:CDS | 50.0% | |
| TTGGGGTAATATGGGTGGTG+GGG | - | chr4.3:43166564-43166583 | MS.gene007705:CDS | 50.0% | |
| ! | AAGGCACCAAGGTTACCATC+AGG | + | chr4.3:43166736-43166755 | None:intergenic | 50.0% |
| ! | AATGGTACTGCTGCTGGTTG+GGG | - | chr4.3:43166547-43166566 | MS.gene007705:CDS | 50.0% |
| ! | CCTTCTTCTGTAAGGCACCA+AGG | + | chr4.3:43166747-43166766 | None:intergenic | 50.0% |
| ! | GCTGCTGGTTGGGGTAATAT+GGG | - | chr4.3:43166556-43166575 | MS.gene007705:CDS | 50.0% |
| ! | GTGCTACTCCTTTCACTGCT+TGG | - | chr4.3:43166635-43166654 | MS.gene007705:intron | 50.0% |
| ! | TGCTGCTGGTTGGGGTAATA+TGG | - | chr4.3:43166555-43166574 | MS.gene007705:CDS | 50.0% |
| ! | TTCTGAGAGAGGAAAGCGTG+TGG | - | chr4.3:43167832-43167851 | MS.gene007705:CDS | 50.0% |
| !! | AAATCCGACGTTGGTAACGC+CGG | - | chr4.3:43166274-43166293 | MS.gene007705:CDS | 50.0% |
| !! | CCTTGGTGCCTTACAGAAGA+AGG | - | chr4.3:43166744-43166763 | MS.gene007705:intron | 50.0% |
| ACCTGAAACCGAAGCGACTC+CGG | + | chr4.3:43166296-43166315 | None:intergenic | 55.0% | |
| ACTCCATGCATGGAGCTTCC+TGG | + | chr4.3:43166010-43166029 | None:intergenic | 55.0% | |
| ACTGGTGCAGGCGGAAACTT+TGG | - | chr4.3:43167557-43167576 | MS.gene007705:CDS | 55.0% | |
| AGCTCCATGCATGGAGTGAC+TGG | - | chr4.3:43166013-43166032 | MS.gene007705:CDS | 55.0% | |
| CGCCATTAGTCCCGATCATC+CGG | - | chr4.3:43166233-43166252 | MS.gene007705:CDS | 55.0% | |
| GCCATTAGTCCCGATCATCC+GGG | - | chr4.3:43166234-43166253 | MS.gene007705:CDS | 55.0% | |
| GCTGGTTGGGGTAATATGGG+TGG | - | chr4.3:43166559-43166578 | MS.gene007705:CDS | 55.0% | |
| GGTTGGGGTAATATGGGTGG+TGG | - | chr4.3:43166562-43166581 | MS.gene007705:CDS | 55.0% | |
| GTTGGAGCACAAGCAGCATG+TGG | - | chr4.3:43167473-43167492 | MS.gene007705:CDS | 55.0% | |
| TCACCAGGAAGCTCCATGCA+TGG | - | chr4.3:43166004-43166023 | MS.gene007705:CDS | 55.0% | |
| TCCCGGATGATCGGGACTAA+TGG | + | chr4.3:43166238-43166257 | None:intergenic | 55.0% | |
| TCGGCATGCGAGGAAGACTA+TGG | - | chr4.3:43167351-43167370 | MS.gene007705:CDS | 55.0% | |
| ! | GCAGGCGGAAACTTTGGTTC+AGG | - | chr4.3:43167563-43167582 | MS.gene007705:CDS | 55.0% |
| GACTCCGGCGTTACCAACGT+CGG | + | chr4.3:43166281-43166300 | None:intergenic | 60.0% | |
| ! | TGGTAACGCCGGAGTCGCTT+CGG | - | chr4.3:43166285-43166304 | MS.gene007705:CDS | 60.0% |
| GCCGGAGTCGCTTCGGTTTC+AGG | - | chr4.3:43166292-43166311 | MS.gene007705:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 43165986 | 43167895 | 43165986 | ID=MS.gene007705 |
| chr4.3 | mRNA | 43165986 | 43167895 | 43165986 | ID=MS.gene007705.t1;Parent=MS.gene007705 |
| chr4.3 | exon | 43167086 | 43167895 | 43167086 | ID=MS.gene007705.t1.exon1;Parent=MS.gene007705.t1 |
| chr4.3 | CDS | 43167086 | 43167895 | 43167086 | ID=cds.MS.gene007705.t1;Parent=MS.gene007705.t1 |
| chr4.3 | exon | 43166848 | 43166963 | 43166848 | ID=MS.gene007705.t1.exon2;Parent=MS.gene007705.t1 |
| chr4.3 | CDS | 43166848 | 43166963 | 43166848 | ID=cds.MS.gene007705.t1;Parent=MS.gene007705.t1 |
| chr4.3 | exon | 43165986 | 43166640 | 43165986 | ID=MS.gene007705.t1.exon3;Parent=MS.gene007705.t1 |
| chr4.3 | CDS | 43165986 | 43166640 | 43165986 | ID=cds.MS.gene007705.t1;Parent=MS.gene007705.t1 |
| Gene Sequence |
| Protein sequence |
