Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08666.t1 | XP_013455976.1 | 99.2 | 526 | 4 | 0 | 1 | 526 | 1 | 526 | 2.80E-300 | 1040.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08666.t1 | O82811 | 79.0 | 529 | 108 | 1 | 1 | 526 | 1 | 529 | 1.8e-247 | 856.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08666.t1 | G7IRD1 | 99.2 | 526 | 4 | 0 | 1 | 526 | 1 | 526 | 2.0e-300 | 1040.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050095 | MS.gene08666 | 0.873962 | 9.79E-68 | -1.69E-46 |
| MS.gene050096 | MS.gene08666 | 0.895234 | 1.16E-75 | -1.69E-46 |
| MS.gene05233 | MS.gene08666 | 0.811618 | 6.40E-51 | -1.69E-46 |
| MS.gene05240 | MS.gene08666 | 0.804523 | 2.07E-49 | -1.69E-46 |
| MS.gene053031 | MS.gene08666 | 0.801138 | 1.04E-48 | -1.69E-46 |
| MS.gene053406 | MS.gene08666 | 0.831896 | 1.29E-55 | -1.69E-46 |
| MS.gene054742 | MS.gene08666 | 0.814372 | 1.59E-51 | -1.69E-46 |
| MS.gene056920 | MS.gene08666 | 0.801463 | 8.90E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08666 | MS.gene067952 | PPI |
| MS.gene08666 | MS.gene08732 | PPI |
| MS.gene007704 | MS.gene08666 | PPI |
| MS.gene08666 | MS.gene007704 | PPI |
| MS.gene08666 | MS.gene050095 | PPI |
| MS.gene08666 | MS.gene007705 | PPI |
| MS.gene08666 | MS.gene08733 | PPI |
| MS.gene08666 | MS.gene050096 | PPI |
| MS.gene08666 | MS.gene056444 | PPI |
| MS.gene08666 | MS.gene008847 | PPI |
| MS.gene08666 | MS.gene97933 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08666.t1 | MTR_4g057890 | 99.240 | 526 | 4 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1070 |
| MS.gene08666.t1 | MTR_4g057865 | 99.049 | 526 | 5 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1069 |
| MS.gene08666.t1 | MTR_8g069775 | 61.554 | 489 | 186 | 2 | 38 | 524 | 18 | 506 | 0.0 | 591 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08666.t1 | AT1G08090 | 79.017 | 529 | 108 | 1 | 1 | 526 | 1 | 529 | 0.0 | 881 |
| MS.gene08666.t1 | AT5G60770 | 79.017 | 529 | 105 | 2 | 1 | 526 | 1 | 526 | 0.0 | 877 |
| MS.gene08666.t1 | AT1G08100 | 75.048 | 517 | 126 | 2 | 7 | 521 | 6 | 521 | 0.0 | 818 |
| MS.gene08666.t1 | AT5G60780 | 72.983 | 533 | 136 | 3 | 2 | 526 | 6 | 538 | 0.0 | 793 |
| MS.gene08666.t1 | AT3G45060 | 72.097 | 534 | 136 | 4 | 5 | 526 | 9 | 541 | 0.0 | 780 |
| MS.gene08666.t1 | AT1G12940 | 59.259 | 486 | 194 | 2 | 38 | 522 | 20 | 502 | 0.0 | 605 |
| MS.gene08666.t1 | AT5G14570 | 48.723 | 470 | 219 | 4 | 41 | 493 | 18 | 482 | 8.87e-152 | 443 |
Find 137 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGGAGTCGCTTCGGTTTC+AGG | 0.105482 | 4.4:-45530572 | MS.gene08666:CDS |
| GCATGTTATCATGGGTATTT+TGG | 0.143284 | 4.4:-45530177 | MS.gene08666:CDS |
| TGCTGCTGGTTGGGGTAATA+TGG | 0.200878 | 4.4:-45530309 | MS.gene08666:CDS |
| ATCAACTGGTAATGCAAATT+TGG | 0.211102 | 4.4:+45530769 | None:intergenic |
| CCTACTTTATGGTTACTCTA+TGG | 0.225302 | 4.4:-45529902 | MS.gene08666:CDS |
| ATTCATCTCAAGAAGATCTT+TGG | 0.227944 | 4.4:-45529334 | MS.gene08666:CDS |
| CATTTGTTTCATGCCAATAT+TGG | 0.240129 | 4.4:-45530379 | MS.gene08666:CDS |
| AAGATTATTGGACTTGTTAA+TGG | 0.242547 | 4.4:-45530335 | MS.gene08666:CDS |
| ATGTTTAATAGTAAGATTAT+TGG | 0.256918 | 4.4:-45530347 | MS.gene08666:CDS |
| GGAATCATTGCTGCATCCTT+TGG | 0.291659 | 4.4:-45529585 | MS.gene08666:CDS |
| CAACAGCTTCAGGTCTTTCA+TGG | 0.291908 | 4.4:-45529227 | MS.gene08666:CDS |
| CGTCGGATTTCGTGAGGTTA+AGG | 0.293043 | 4.4:+45530603 | None:intergenic |
| CACTCAGCTTATTATGCCTT+TGG | 0.295935 | 4.4:-45530276 | MS.gene08666:CDS |
| GTTTATGATTGGTTTCTCTT+TGG | 0.307610 | 4.4:-45530405 | MS.gene08666:CDS |
| AGATCTTTGGGAATTATATC+AGG | 0.310342 | 4.4:-45529321 | MS.gene08666:CDS |
| TAATGGTACTGCTGCTGGTT+GGG | 0.317688 | 4.4:-45530318 | MS.gene08666:CDS |
| GATGTTGCAGCAAGATTATT+CGG | 0.318773 | 4.4:-45529519 | MS.gene08666:CDS |
| ACATTGTACTCATCCAATAT+TGG | 0.319895 | 4.4:+45530366 | None:intergenic |
| GGAATTATATCAGGTTTAAC+TGG | 0.331122 | 4.4:-45529312 | MS.gene08666:CDS |
| GGTTGCATCAGCCAAGTCTT+AGG | 0.340353 | 4.4:-45529059 | MS.gene08666:CDS |
| TGAAAAGAGTTTGAAAACTT+TGG | 0.345000 | 4.4:+45530733 | None:intergenic |
| GGTGCAATTTGTGACCTATT+AGG | 0.354243 | 4.4:-45530524 | MS.gene08666:CDS |
| TTCCAGCTGTGTGTAGCTTT+AGG | 0.354844 | 4.4:+45529604 | None:intergenic |
| TAGTGGGTAGGAGTTGTATT+TGG | 0.358123 | 4.4:+45528979 | None:intergenic |
| AGAAAGATATCCATGATAAA+TGG | 0.374158 | 4.4:+45530684 | None:intergenic |
| TTAAGGTTGTCCCGGATGAT+AGG | 0.374477 | 4.4:+45530620 | None:intergenic |
| GCAGCATGTGGTGCAACATT+TGG | 0.378132 | 4.4:-45529366 | MS.gene08666:CDS |
| TGGTTGGTTGCATGTTATCA+TGG | 0.382144 | 4.4:-45530186 | MS.gene08666:CDS |
| GTGCTACTCCTTTCACTGCT+TGG | 0.383160 | 4.4:-45530229 | MS.gene08666:CDS |
| GCAGGTGGAAACTTTGGTTC+AGG | 0.385832 | 4.4:-45529288 | MS.gene08666:CDS |
| CTGCTGGTTATATAGCAGTT+AGG | 0.391168 | 4.4:-45530427 | MS.gene08666:CDS |
| TTCATCTCAAGAAGATCTTT+GGG | 0.393650 | 4.4:-45529333 | MS.gene08666:CDS |
| ACTCCATGCATGGAGCTTCC+TGG | 0.398240 | 4.4:+45530857 | None:intergenic |
| GGTTGGGGTAATATGGGTGG+TGG | 0.398747 | 4.4:-45530302 | MS.gene08666:CDS |
| AGCTCCATGCATGGAGTGAC+TGG | 0.401149 | 4.4:-45530851 | MS.gene08666:CDS |
| AACCATAACGTGGACCTAAT+AGG | 0.411808 | 4.4:+45530510 | None:intergenic |
| GCTGCTGGTTGGGGTAATAT+GGG | 0.417787 | 4.4:-45530308 | MS.gene08666:CDS |
| CTACTTTATGGTTACTCTAT+GGG | 0.419373 | 4.4:-45529901 | MS.gene08666:CDS |
| CCTTGGTGCTTTGCAGAAGA+AGG | 0.426831 | 4.4:-45530120 | MS.gene08666:CDS |
| AACATAGTTGCTCGTCCATT+CGG | 0.426966 | 4.4:-45529555 | MS.gene08666:CDS |
| GTTGGGGTAATATGGGTGGT+GGG | 0.435234 | 4.4:-45530301 | MS.gene08666:CDS |
| ATAGCAGTTAGGTTTATGAT+TGG | 0.436014 | 4.4:-45530416 | MS.gene08666:CDS |
| TGGATGGGTGCAATGATTGT+TGG | 0.437054 | 4.4:-45529207 | MS.gene08666:CDS |
| TATAACAATGGCTGATATTG+AGG | 0.442270 | 4.4:-45530885 | None:intergenic |
| AAAGATCTTCTTGAGATGAA+TGG | 0.443278 | 4.4:+45529336 | None:intergenic |
| GGTATGCTATAACAAATTAC+AGG | 0.443291 | 4.4:-45529939 | MS.gene08666:CDS |
| CACCATTAGTCCCTATCATC+CGG | 0.446745 | 4.4:-45530631 | MS.gene08666:CDS |
| GACCTATTAGGTCCACGTTA+TGG | 0.448846 | 4.4:-45530512 | MS.gene08666:CDS |
| AATGGTACTGCTGCTGGTTG+GGG | 0.451568 | 4.4:-45530317 | MS.gene08666:CDS |
| ACTGGTGCAGGTGGAAACTT+TGG | 0.451991 | 4.4:-45529294 | MS.gene08666:CDS |
| GGAAAATGAACAAATGCAAC+AGG | 0.456403 | 4.4:+45529174 | None:intergenic |
| TGAGAACCTTCCATTTATCA+TGG | 0.456413 | 4.4:-45530694 | MS.gene08666:CDS |
| TGCGAATGTCGAGACGAAAC+AGG | 0.457564 | 4.4:+45530658 | None:intergenic |
| CTTGTTAATGGTACTGCTGC+TGG | 0.461616 | 4.4:-45530323 | MS.gene08666:CDS |
| ATATGCAGAATACTCCTCCT+AGG | 0.462329 | 4.4:+45529457 | None:intergenic |
| AGAATACTCCTCCTAGGGTT+TGG | 0.463158 | 4.4:+45529463 | None:intergenic |
| AGCTTCAGGTCTTTCATGGA+TGG | 0.465615 | 4.4:-45529223 | MS.gene08666:CDS |
| ATATCAGGTTTAACTGGTGC+AGG | 0.466260 | 4.4:-45529306 | MS.gene08666:CDS |
| TTGCTGAGTATTTCTATGAC+AGG | 0.469828 | 4.4:-45529852 | MS.gene08666:intron |
| AACACTATTACACTTCTGAA+TGG | 0.470788 | 4.4:-45529104 | MS.gene08666:CDS |
| GGAGTATTCTGCATATGGTT+AGG | 0.475643 | 4.4:-45529450 | MS.gene08666:CDS |
| TAGGAGGAGTATTCTGCATA+TGG | 0.475901 | 4.4:-45529455 | MS.gene08666:CDS |
| GGTTACCATCAGGTAAATCT+TGG | 0.480850 | 4.4:+45530141 | None:intergenic |
| GCTGATATTGAGGGTTCACC+AGG | 0.480863 | 4.4:-45530875 | MS.gene08666:CDS |
| CCATAGAGTAACCATAAAGT+AGG | 0.483674 | 4.4:+45529902 | None:intergenic |
| TGGTAACGCTGGAGTCGCTT+CGG | 0.493073 | 4.4:-45530579 | MS.gene08666:CDS |
| TCTTCCAGTCACTCCATGCA+TGG | 0.494400 | 4.4:+45530847 | None:intergenic |
| TTAATGGTACTGCTGCTGGT+TGG | 0.498414 | 4.4:-45530319 | MS.gene08666:CDS |
| TTGGGGTAATATGGGTGGTG+GGG | 0.507796 | 4.4:-45530300 | MS.gene08666:CDS |
| AACCTAAAGCTACACACAGC+TGG | 0.512286 | 4.4:-45529606 | MS.gene08666:CDS |
| CTATAACAAATTACAGGACA+TGG | 0.513380 | 4.4:-45529933 | MS.gene08666:CDS |
| TCGTGAGGTTAAGGTTGTCC+CGG | 0.513783 | 4.4:+45530612 | None:intergenic |
| TCCCGGATGATAGGGACTAA+TGG | 0.521058 | 4.4:+45530629 | None:intergenic |
| GTGGTATCAGTTGGAACCAT+TGG | 0.524676 | 4.4:+45530794 | None:intergenic |
| GATTTGTGTTCAGAATCAAC+TGG | 0.525048 | 4.4:+45530755 | None:intergenic |
| ATGAAGATGAAGTACAGAAA+GGG | 0.525551 | 4.4:-45529080 | MS.gene08666:CDS |
| AATGAAGATGAAGTACAGAA+AGG | 0.527504 | 4.4:-45529081 | MS.gene08666:CDS |
| TAAGGTTGTCCCGGATGATA+GGG | 0.533163 | 4.4:+45530621 | None:intergenic |
| TCGGCATGCGAGGAAGGCTA+TGG | 0.535742 | 4.4:-45529500 | MS.gene08666:CDS |
| TCATTTGTTGAAAATGCTGC+TGG | 0.536611 | 4.4:-45530443 | MS.gene08666:CDS |
| GATTTACCTGATGGTAACCT+TGG | 0.538623 | 4.4:-45530137 | MS.gene08666:CDS |
| TCCATGATCCTCTTCTCAGT+TGG | 0.543814 | 4.4:-45529396 | MS.gene08666:CDS |
| GATTATTCGGCATGCGAGGA+AGG | 0.544135 | 4.4:-45529506 | MS.gene08666:CDS |
| GTCATCAGTTGCTTCACCAA+TGG | 0.548350 | 4.4:-45530810 | MS.gene08666:CDS |
| CATTGCTGCATCCTTTGGAA+TGG | 0.548449 | 4.4:-45529580 | MS.gene08666:CDS |
| GGTTGGTTGCATGTTATCAT+GGG | 0.550695 | 4.4:-45530185 | MS.gene08666:CDS |
| GCTTCAGGTCTTTCATGGAT+GGG | 0.552112 | 4.4:-45529222 | MS.gene08666:CDS |
| ATAACAATGGCTGATATTGA+GGG | 0.552556 | 4.4:-45530884 | None:intergenic |
| ATGATAACATGCAACCAACC+AGG | 0.556711 | 4.4:+45530188 | None:intergenic |
| CTTGTGCTCCAACTGAGAAG+AGG | 0.561854 | 4.4:+45529388 | None:intergenic |
| ACCATTAGTCCCTATCATCC+GGG | 0.562252 | 4.4:-45530630 | MS.gene08666:CDS |
| TGGGTAGGAGTTGTATTTGG+TGG | 0.563220 | 4.4:+45528982 | None:intergenic |
| AACTATGTTTGCCATTCCAA+AGG | 0.569835 | 4.4:+45529569 | None:intergenic |
| CATAGAGTAACCATAAAGTA+GGG | 0.569934 | 4.4:+45529903 | None:intergenic |
| GAGGAAGGCTATGGACACTT+TGG | 0.574369 | 4.4:-45529491 | MS.gene08666:CDS |
| CTTGGTGCTTTGCAGAAGAA+GGG | 0.574830 | 4.4:-45530119 | MS.gene08666:CDS |
| AATTTGGCTGTGGTATCAGT+TGG | 0.576596 | 4.4:+45530785 | None:intergenic |
| GCAATTCTCCAAGCAGTGAA+AGG | 0.578221 | 4.4:+45530221 | None:intergenic |
| GAGAATAGTCGTTCTGAGAG+AGG | 0.578576 | 4.4:-45529030 | MS.gene08666:CDS |
| AATGACATACAAAACACTGT+TGG | 0.582355 | 4.4:+45530461 | None:intergenic |
| TTCTCAGCAAACCTAAGACT+TGG | 0.583555 | 4.4:+45529048 | None:intergenic |
| AAATCCGACGTTGGTAACGC+TGG | 0.586068 | 4.4:-45530590 | MS.gene08666:CDS |
| TCACCAGGAAGCTCCATGCA+TGG | 0.586180 | 4.4:-45530860 | MS.gene08666:CDS |
| AAATGGAAGGTTCTCATGTG+AGG | 0.586590 | 4.4:+45530701 | None:intergenic |
| TGGATCTTCCAAACCCTAGG+AGG | 0.586891 | 4.4:-45529471 | MS.gene08666:CDS |
| AAAGCACCAAGGTTACCATC+AGG | 0.588442 | 4.4:+45530131 | None:intergenic |
| TATGAGTTGATTAGAAGAGC+TGG | 0.589543 | 4.4:-45530251 | MS.gene08666:CDS |
| CTTTGGATCTTCCAAACCCT+AGG | 0.590786 | 4.4:-45529474 | MS.gene08666:CDS |
| TTGGTGCTGTAAGCATGATA+AGG | 0.592020 | 4.4:+45530480 | None:intergenic |
| TATGCAGAATACTCCTCCTA+GGG | 0.594126 | 4.4:+45529458 | None:intergenic |
| TTAGGCCAAGATTTACCTGA+TGG | 0.597509 | 4.4:-45530146 | MS.gene08666:CDS |
| TCTGATGCATATCCGCCGAA+TGG | 0.605405 | 4.4:+45529540 | None:intergenic |
| TACCAACGTCGGATTTCGTG+AGG | 0.605986 | 4.4:+45530597 | None:intergenic |
| GGCATAGCATAACTACTAGT+GGG | 0.609087 | 4.4:+45528963 | None:intergenic |
| ATCATGGATAGTACTGCGAT+CGG | 0.609698 | 4.4:+45529411 | None:intergenic |
| ATAGTTGCTCGTCCATTCGG+CGG | 0.613192 | 4.4:-45529552 | MS.gene08666:CDS |
| CCTTCTTCTGCAAAGCACCA+AGG | 0.613924 | 4.4:+45530120 | None:intergenic |
| TCAGGTTTAACTGGTGCAGG+TGG | 0.614618 | 4.4:-45529303 | MS.gene08666:CDS |
| TCCAACTGAGAAGAGGATCA+TGG | 0.614752 | 4.4:+45529395 | None:intergenic |
| AATGGAAGGTTCTCATGTGA+GGG | 0.615898 | 4.4:+45530702 | None:intergenic |
| CTAATCAACTCATACACCAA+AGG | 0.617873 | 4.4:+45530260 | None:intergenic |
| TAGCATAACTACTAGTGGGT+AGG | 0.619737 | 4.4:+45528967 | None:intergenic |
| AGATATCCATGATAAATGGA+AGG | 0.625047 | 4.4:+45530688 | None:intergenic |
| TGAAGCAACTGATGACATGA+AGG | 0.627231 | 4.4:+45530817 | None:intergenic |
| GCTGGTTGGGGTAATATGGG+TGG | 0.628336 | 4.4:-45530305 | MS.gene08666:CDS |
| GCAAGATTATTCGGCATGCG+AGG | 0.636291 | 4.4:-45529510 | MS.gene08666:CDS |
| TGGTAATGCAAATTTGGCTG+TGG | 0.639028 | 4.4:+45530775 | None:intergenic |
| CTCAGCAATGACATTGTCAG+TGG | 0.646298 | 4.4:+45529867 | None:intergenic |
| TGATAACATGCAACCAACCA+GGG | 0.648113 | 4.4:+45530189 | None:intergenic |
| GTTGGAGCACAAGCAGCATG+TGG | 0.659585 | 4.4:-45529378 | MS.gene08666:CDS |
| TGCTAAAGACAAGTTCACAA+AGG | 0.663793 | 4.4:-45530090 | MS.gene08666:intron |
| TTCTGAGAGAGGAAAGCGTG+TGG | 0.674767 | 4.4:-45529019 | MS.gene08666:CDS |
| AACCTCACGAAATCCGACGT+TGG | 0.679989 | 4.4:-45530599 | MS.gene08666:CDS |
| AGGAAAGCACAACCATAACG+TGG | 0.709978 | 4.4:+45530500 | None:intergenic |
| GACTCCAGCGTTACCAACGT+CGG | 0.710420 | 4.4:+45530586 | None:intergenic |
| CAAAGGCATAATAAGCTGAG+TGG | 0.711499 | 4.4:+45530277 | None:intergenic |
| AGGAACATGCTACCCCACTG+TGG | 0.730068 | 4.4:+45529153 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAGTATATTAAATAATTT+AGG | - | chr4.4:45529865-45529884 | MS.gene08666:CDS | 10.0% |
| !!! | TATGATTTTTTTTTTTTTTC+AGG | - | chr4.4:45529888-45529907 | MS.gene08666:CDS | 10.0% |
| !! | ATGTTTAATAGTAAGATTAT+TGG | - | chr4.4:45529509-45529528 | MS.gene08666:CDS | 15.0% |
| !!! | ACAATTTTTTTTTAAAACCT+AGG | - | chr4.4:45530161-45530180 | MS.gene08666:CDS | 15.0% |
| !! | AAAAAATTGTGAGTCTAATT+CGG | + | chr4.4:45530151-45530170 | None:intergenic | 20.0% |
| !! | CTAATAAATGGATATAAAAC+AGG | - | chr4.4:45530224-45530243 | MS.gene08666:CDS | 20.0% |
| !! | TCTAACAAATCTCTAATAAA+TGG | - | chr4.4:45530212-45530231 | MS.gene08666:CDS | 20.0% |
| !! | TTAATATACTTTGAACTTGA+AGG | + | chr4.4:45529858-45529877 | None:intergenic | 20.0% |
| !!! | TCAATTGATTAATTGTTTTG+TGG | + | chr4.4:45529827-45529846 | None:intergenic | 20.0% |
| ! | AGAAAGATATCCATGATAAA+TGG | + | chr4.4:45529175-45529194 | None:intergenic | 25.0% |
| ! | TGAAAAGAGTTTGAAAACTT+TGG | + | chr4.4:45529126-45529145 | None:intergenic | 25.0% |
| ! | TGTAGATATATACAATCTTG+AGG | + | chr4.4:45530073-45530092 | None:intergenic | 25.0% |
| !! | AGTTTTCAAACTCTTTTCAA+TGG | - | chr4.4:45529127-45529146 | MS.gene08666:CDS | 25.0% |
| !! | CGGATCATAATTTTAAATTG+TGG | + | chr4.4:45530131-45530150 | None:intergenic | 25.0% |
| !!! | AAGATTATTGGACTTGTTAA+TGG | - | chr4.4:45529521-45529540 | MS.gene08666:CDS | 25.0% |
| !!! | ACTTAATTTGTGTCATTGAT+TGG | - | chr4.4:45529799-45529818 | MS.gene08666:intron | 25.0% |
| !!! | TTTTTTTTTTTCAGGTGTTG+TGG | - | chr4.4:45529896-45529915 | MS.gene08666:CDS | 25.0% |
| AAAGATCTTCTTGAGATGAA+TGG | + | chr4.4:45530523-45530542 | None:intergenic | 30.0% | |
| AACACTATTACACTTCTGAA+TGG | - | chr4.4:45530752-45530771 | MS.gene08666:CDS | 30.0% | |
| AATGAAGATGAAGTACAGAA+AGG | - | chr4.4:45530775-45530794 | MS.gene08666:CDS | 30.0% | |
| AATGACATACAAAACACTGT+TGG | + | chr4.4:45529398-45529417 | None:intergenic | 30.0% | |
| ACATTGTACTCATCCAATAT+TGG | + | chr4.4:45529493-45529512 | None:intergenic | 30.0% | |
| AGATATCCATGATAAATGGA+AGG | + | chr4.4:45529171-45529190 | None:intergenic | 30.0% | |
| ATAGCAGTTAGGTTTATGAT+TGG | - | chr4.4:45529440-45529459 | MS.gene08666:CDS | 30.0% | |
| ATGAAGATGAAGTACAGAAA+GGG | - | chr4.4:45530776-45530795 | MS.gene08666:CDS | 30.0% | |
| ATTCATCTCAAGAAGATCTT+TGG | - | chr4.4:45530522-45530541 | MS.gene08666:CDS | 30.0% | |
| CATAGAGTAACCATAAAGTA+GGG | + | chr4.4:45529956-45529975 | None:intergenic | 30.0% | |
| CATTTGTTTCATGCCAATAT+TGG | - | chr4.4:45529477-45529496 | MS.gene08666:CDS | 30.0% | |
| CTACTTTATGGTTACTCTAT+GGG | - | chr4.4:45529955-45529974 | MS.gene08666:intron | 30.0% | |
| CTATAACAAATTACAGGACA+TGG | - | chr4.4:45529923-45529942 | MS.gene08666:CDS | 30.0% | |
| GGAATTATATCAGGTTTAAC+TGG | - | chr4.4:45530544-45530563 | MS.gene08666:CDS | 30.0% | |
| GGTATGCTATAACAAATTAC+AGG | - | chr4.4:45529917-45529936 | MS.gene08666:CDS | 30.0% | |
| TTAATTTACAACTGCAGTTG+CGG | - | chr4.4:45530104-45530123 | MS.gene08666:CDS | 30.0% | |
| TTCATCTCAAGAAGATCTTT+GGG | - | chr4.4:45530523-45530542 | MS.gene08666:CDS | 30.0% | |
| ! | AGATCTTTGGGAATTATATC+AGG | - | chr4.4:45530535-45530554 | MS.gene08666:CDS | 30.0% |
| ! | ATCAACTGGTAATGCAAATT+TGG | + | chr4.4:45529090-45529109 | None:intergenic | 30.0% |
| ! | ATTTGTTCATTTTCCACAGT+GGG | - | chr4.4:45530690-45530709 | MS.gene08666:CDS | 30.0% |
| ! | TCAAAATTTTCAACAGCTTC+AGG | - | chr4.4:45530619-45530638 | MS.gene08666:CDS | 30.0% |
| ! | TCTTCATTGATCTCTTTTGA+AGG | + | chr4.4:45530733-45530752 | None:intergenic | 30.0% |
| !! | GTTTATGATTGGTTTCTCTT+TGG | - | chr4.4:45529451-45529470 | MS.gene08666:CDS | 30.0% |
| !! | TTTCAGGTAGTATTTTCTCA+AGG | - | chr4.4:45529300-45529319 | MS.gene08666:CDS | 30.0% |
| !!! | GGTATTTTGGTCTTAACATT+AGG | - | chr4.4:45529692-45529711 | MS.gene08666:intron | 30.0% |
| AACTATGTTTGCCATTCCAA+AGG | + | chr4.4:45530290-45530309 | None:intergenic | 35.0% | |
| AATGTTCGTTACAATCTCCT+AGG | + | chr4.4:45530181-45530200 | None:intergenic | 35.0% | |
| CCATAGAGTAACCATAAAGT+AGG | + | chr4.4:45529957-45529976 | None:intergenic | 35.0% | |
| CCTACTTTATGGTTACTCTA+TGG | - | chr4.4:45529954-45529973 | MS.gene08666:intron | 35.0% | |
| CTAATCAACTCATACACCAA+AGG | + | chr4.4:45529599-45529618 | None:intergenic | 35.0% | |
| GATGTTGCAGCAAGATTATT+CGG | - | chr4.4:45530337-45530356 | MS.gene08666:CDS | 35.0% | |
| GATTTGTGTTCAGAATCAAC+TGG | + | chr4.4:45529104-45529123 | None:intergenic | 35.0% | |
| GGAAAATGAACAAATGCAAC+AGG | + | chr4.4:45530685-45530704 | None:intergenic | 35.0% | |
| TGAGAACCTTCCATTTATCA+TGG | - | chr4.4:45529162-45529181 | MS.gene08666:CDS | 35.0% | |
| TGCTAAAGACAAGTTCACAA+AGG | - | chr4.4:45529766-45529785 | MS.gene08666:intron | 35.0% | |
| ! | ATTTTCTCAAGGCTTGCAAT+GGG | - | chr4.4:45529311-45529330 | MS.gene08666:CDS | 35.0% |
| ! | CATTTGTTCATTTTCCACAG+TGG | - | chr4.4:45530689-45530708 | MS.gene08666:CDS | 35.0% |
| ! | GCATGTTATCATGGGTATTT+TGG | - | chr4.4:45529679-45529698 | MS.gene08666:intron | 35.0% |
| ! | TATTTTCTCAAGGCTTGCAA+TGG | - | chr4.4:45529310-45529329 | MS.gene08666:CDS | 35.0% |
| ! | TCATTTGTTGAAAATGCTGC+TGG | - | chr4.4:45529413-45529432 | MS.gene08666:CDS | 35.0% |
| ! | TGGATTTTTGCCCTACTTTA+TGG | - | chr4.4:45529943-45529962 | MS.gene08666:CDS | 35.0% |
| ! | TTGCTGAGTATTTCTATGAC+AGG | - | chr4.4:45530004-45530023 | MS.gene08666:intron | 35.0% |
| ! | TTTGTTCATTTTCCACAGTG+GGG | - | chr4.4:45530691-45530710 | MS.gene08666:CDS | 35.0% |
| !! | TATGAGTTGATTAGAAGAGC+TGG | - | chr4.4:45529605-45529624 | MS.gene08666:CDS | 35.0% |
| !! | TCATTGATCTCTTTTGAAGG+TGG | + | chr4.4:45530730-45530749 | None:intergenic | 35.0% |
| !!! | AGAATTGCCTTTTTTATCCC+TGG | - | chr4.4:45529650-45529669 | MS.gene08666:intron | 35.0% |
| AAATGGAAGGTTCTCATGTG+AGG | + | chr4.4:45529158-45529177 | None:intergenic | 40.0% | |
| AACATAGTTGCTCGTCCATT+CGG | - | chr4.4:45530301-45530320 | MS.gene08666:CDS | 40.0% | |
| AACCATAACGTGGACCTAAT+AGG | + | chr4.4:45529349-45529368 | None:intergenic | 40.0% | |
| AATGGAAGGTTCTCATGTGA+GGG | + | chr4.4:45529157-45529176 | None:intergenic | 40.0% | |
| AATTTGGCTGTGGTATCAGT+TGG | + | chr4.4:45529074-45529093 | None:intergenic | 40.0% | |
| ATATCAGGTTTAACTGGTGC+AGG | - | chr4.4:45530550-45530569 | MS.gene08666:CDS | 40.0% | |
| ATATGCAGAATACTCCTCCT+AGG | + | chr4.4:45530402-45530421 | None:intergenic | 40.0% | |
| ATCATGGATAGTACTGCGAT+CGG | + | chr4.4:45530448-45530467 | None:intergenic | 40.0% | |
| ATGATAACATGCAACCAACC+AGG | + | chr4.4:45529671-45529690 | None:intergenic | 40.0% | |
| CAACCAACCAGGGATAAAAA+AGG | + | chr4.4:45529660-45529679 | None:intergenic | 40.0% | |
| CACTCAGCTTATTATGCCTT+TGG | - | chr4.4:45529580-45529599 | MS.gene08666:CDS | 40.0% | |
| GATTTACCTGATGGTAACCT+TGG | - | chr4.4:45529719-45529738 | MS.gene08666:intron | 40.0% | |
| GGTGCAATTTGTGACCTATT+AGG | - | chr4.4:45529332-45529351 | MS.gene08666:CDS | 40.0% | |
| GGTTACCATCAGGTAAATCT+TGG | + | chr4.4:45529718-45529737 | None:intergenic | 40.0% | |
| TATGCAGAATACTCCTCCTA+GGG | + | chr4.4:45530401-45530420 | None:intergenic | 40.0% | |
| TGAAGCAACTGATGACATGA+AGG | + | chr4.4:45529042-45529061 | None:intergenic | 40.0% | |
| TGATAACATGCAACCAACCA+GGG | + | chr4.4:45529670-45529689 | None:intergenic | 40.0% | |
| TTAGGCCAAGATTTACCTGA+TGG | - | chr4.4:45529710-45529729 | MS.gene08666:intron | 40.0% | |
| TTCTCAGCAAACCTAAGACT+TGG | + | chr4.4:45530811-45530830 | None:intergenic | 40.0% | |
| ! | CAAAGGCATAATAAGCTGAG+TGG | + | chr4.4:45529582-45529601 | None:intergenic | 40.0% |
| ! | CTGCTGGTTATATAGCAGTT+AGG | - | chr4.4:45529429-45529448 | MS.gene08666:CDS | 40.0% |
| ! | GGAGTATTCTGCATATGGTT+AGG | - | chr4.4:45530406-45530425 | MS.gene08666:CDS | 40.0% |
| ! | GGTTGGTTGCATGTTATCAT+GGG | - | chr4.4:45529671-45529690 | MS.gene08666:intron | 40.0% |
| ! | TAGTGGGTAGGAGTTGTATT+TGG | + | chr4.4:45530880-45530899 | None:intergenic | 40.0% |
| ! | TGGTAATGCAAATTTGGCTG+TGG | + | chr4.4:45529084-45529103 | None:intergenic | 40.0% |
| ! | TGGTTGGTTGCATGTTATCA+TGG | - | chr4.4:45529670-45529689 | MS.gene08666:intron | 40.0% |
| !! | TAGGAGGAGTATTCTGCATA+TGG | - | chr4.4:45530401-45530420 | MS.gene08666:CDS | 40.0% |
| !! | TGATCTCTTTTGAAGGTGGA+AGG | + | chr4.4:45530726-45530745 | None:intergenic | 40.0% |
| !! | TTGGTGCTGTAAGCATGATA+AGG | + | chr4.4:45529379-45529398 | None:intergenic | 40.0% |
| !!! | TTGCCTTTTTTATCCCTGGT+TGG | - | chr4.4:45529654-45529673 | MS.gene08666:intron | 40.0% |
| AACCTAAAGCTACACACAGC+TGG | - | chr4.4:45530250-45530269 | MS.gene08666:CDS | 45.0% | |
| ACCATTAGTCCCTATCATCC+GGG | - | chr4.4:45529226-45529245 | MS.gene08666:CDS | 45.0% | |
| AGAATACTCCTCCTAGGGTT+TGG | + | chr4.4:45530396-45530415 | None:intergenic | 45.0% | |
| AGCTTCAGGTCTTTCATGGA+TGG | - | chr4.4:45530633-45530652 | MS.gene08666:CDS | 45.0% | |
| CAACAGCTTCAGGTCTTTCA+TGG | - | chr4.4:45530629-45530648 | MS.gene08666:CDS | 45.0% | |
| CACCATTAGTCCCTATCATC+CGG | - | chr4.4:45529225-45529244 | MS.gene08666:CDS | 45.0% | |
| CTCAGCAATGACATTGTCAG+TGG | + | chr4.4:45529992-45530011 | None:intergenic | 45.0% | |
| CTTGTTAATGGTACTGCTGC+TGG | - | chr4.4:45529533-45529552 | MS.gene08666:CDS | 45.0% | |
| CTTTGGATCTTCCAAACCCT+AGG | - | chr4.4:45530382-45530401 | MS.gene08666:CDS | 45.0% | |
| GACCTATTAGGTCCACGTTA+TGG | - | chr4.4:45529344-45529363 | MS.gene08666:CDS | 45.0% | |
| GCAATTCTCCAAGCAGTGAA+AGG | + | chr4.4:45529638-45529657 | None:intergenic | 45.0% | |
| GCTTCAGGTCTTTCATGGAT+GGG | - | chr4.4:45530634-45530653 | MS.gene08666:CDS | 45.0% | |
| GGAATCATTGCTGCATCCTT+TGG | - | chr4.4:45530271-45530290 | MS.gene08666:CDS | 45.0% | |
| GTCATCAGTTGCTTCACCAA+TGG | - | chr4.4:45529046-45529065 | MS.gene08666:CDS | 45.0% | |
| GTGGTATCAGTTGGAACCAT+TGG | + | chr4.4:45529065-45529084 | None:intergenic | 45.0% | |
| TAAGGTTGTCCCGGATGATA+GGG | + | chr4.4:45529238-45529257 | None:intergenic | 45.0% | |
| TCCAACTGAGAAGAGGATCA+TGG | + | chr4.4:45530464-45530483 | None:intergenic | 45.0% | |
| TCCATGATCCTCTTCTCAGT+TGG | - | chr4.4:45530460-45530479 | MS.gene08666:CDS | 45.0% | |
| TGGATGGGTGCAATGATTGT+TGG | - | chr4.4:45530649-45530668 | MS.gene08666:CDS | 45.0% | |
| TGGGTAGGAGTTGTATTTGG+TGG | + | chr4.4:45530877-45530896 | None:intergenic | 45.0% | |
| TTAAGGTTGTCCCGGATGAT+AGG | + | chr4.4:45529239-45529258 | None:intergenic | 45.0% | |
| TTAATGGTACTGCTGCTGGT+TGG | - | chr4.4:45529537-45529556 | MS.gene08666:CDS | 45.0% | |
| TTCCAGCTGTGTGTAGCTTT+AGG | + | chr4.4:45530255-45530274 | None:intergenic | 45.0% | |
| ! | AAAGCACCAAGGTTACCATC+AGG | + | chr4.4:45529728-45529747 | None:intergenic | 45.0% |
| ! | AGGAAAGCACAACCATAACG+TGG | + | chr4.4:45529359-45529378 | None:intergenic | 45.0% |
| ! | CATTGCTGCATCCTTTGGAA+TGG | - | chr4.4:45530276-45530295 | MS.gene08666:CDS | 45.0% |
| ! | TAATGGTACTGCTGCTGGTT+GGG | - | chr4.4:45529538-45529557 | MS.gene08666:CDS | 45.0% |
| !! | CTTGGTGCTTTGCAGAAGAA+GGG | - | chr4.4:45529737-45529756 | MS.gene08666:intron | 45.0% |
| !! | GAGAATAGTCGTTCTGAGAG+AGG | - | chr4.4:45530826-45530845 | MS.gene08666:CDS | 45.0% |
| AACCTCACGAAATCCGACGT+TGG | - | chr4.4:45529257-45529276 | MS.gene08666:CDS | 50.0% | |
| ACTGGTGCAGGTGGAAACTT+TGG | - | chr4.4:45530562-45530581 | MS.gene08666:CDS | 50.0% | |
| ATAGTTGCTCGTCCATTCGG+CGG | - | chr4.4:45530304-45530323 | MS.gene08666:CDS | 50.0% | |
| CGTCGGATTTCGTGAGGTTA+AGG | + | chr4.4:45529256-45529275 | None:intergenic | 50.0% | |
| CTTGTGCTCCAACTGAGAAG+AGG | + | chr4.4:45530471-45530490 | None:intergenic | 50.0% | |
| GAGGAAGGCTATGGACACTT+TGG | - | chr4.4:45530365-45530384 | MS.gene08666:CDS | 50.0% | |
| GATTATTCGGCATGCGAGGA+AGG | - | chr4.4:45530350-45530369 | MS.gene08666:CDS | 50.0% | |
| GCAAGATTATTCGGCATGCG+AGG | - | chr4.4:45530346-45530365 | MS.gene08666:CDS | 50.0% | |
| GCAGCATGTGGTGCAACATT+TGG | - | chr4.4:45530490-45530509 | MS.gene08666:CDS | 50.0% | |
| GCTGATATTGAGGGTTCACC+AGG | - | chr4.4:45528981-45529000 | MS.gene08666:CDS | 50.0% | |
| GGTTGCATCAGCCAAGTCTT+AGG | - | chr4.4:45530797-45530816 | MS.gene08666:CDS | 50.0% | |
| GTTGGGGTAATATGGGTGGT+GGG | - | chr4.4:45529555-45529574 | MS.gene08666:CDS | 50.0% | |
| TACCAACGTCGGATTTCGTG+AGG | + | chr4.4:45529262-45529281 | None:intergenic | 50.0% | |
| TCAGGTTTAACTGGTGCAGG+TGG | - | chr4.4:45530553-45530572 | MS.gene08666:CDS | 50.0% | |
| TCCCGGATGATAGGGACTAA+TGG | + | chr4.4:45529230-45529249 | None:intergenic | 50.0% | |
| TCGTGAGGTTAAGGTTGTCC+CGG | + | chr4.4:45529247-45529266 | None:intergenic | 50.0% | |
| TCTGATGCATATCCGCCGAA+TGG | + | chr4.4:45530319-45530338 | None:intergenic | 50.0% | |
| TCTTCCAGTCACTCCATGCA+TGG | + | chr4.4:45529012-45529031 | None:intergenic | 50.0% | |
| TGCGAATGTCGAGACGAAAC+AGG | + | chr4.4:45529201-45529220 | None:intergenic | 50.0% | |
| TGGATCTTCCAAACCCTAGG+AGG | - | chr4.4:45530385-45530404 | MS.gene08666:CDS | 50.0% | |
| TTGGGGTAATATGGGTGGTG+GGG | - | chr4.4:45529556-45529575 | MS.gene08666:CDS | 50.0% | |
| ! | AATGGTACTGCTGCTGGTTG+GGG | - | chr4.4:45529539-45529558 | MS.gene08666:CDS | 50.0% |
| ! | CCTTCTTCTGCAAAGCACCA+AGG | + | chr4.4:45529739-45529758 | None:intergenic | 50.0% |
| ! | GCAGGTGGAAACTTTGGTTC+AGG | - | chr4.4:45530568-45530587 | MS.gene08666:CDS | 50.0% |
| ! | GCTGCTGGTTGGGGTAATAT+GGG | - | chr4.4:45529548-45529567 | MS.gene08666:CDS | 50.0% |
| ! | GTGCTACTCCTTTCACTGCT+TGG | - | chr4.4:45529627-45529646 | MS.gene08666:intron | 50.0% |
| ! | TGCTGCTGGTTGGGGTAATA+TGG | - | chr4.4:45529547-45529566 | MS.gene08666:CDS | 50.0% |
| ! | TTCTGAGAGAGGAAAGCGTG+TGG | - | chr4.4:45530837-45530856 | MS.gene08666:CDS | 50.0% |
| !! | AAATCCGACGTTGGTAACGC+TGG | - | chr4.4:45529266-45529285 | MS.gene08666:CDS | 50.0% |
| !! | CCTTGGTGCTTTGCAGAAGA+AGG | - | chr4.4:45529736-45529755 | MS.gene08666:intron | 50.0% |
| ACTCCATGCATGGAGCTTCC+TGG | + | chr4.4:45529002-45529021 | None:intergenic | 55.0% | |
| AGCTCCATGCATGGAGTGAC+TGG | - | chr4.4:45529005-45529024 | MS.gene08666:CDS | 55.0% | |
| AGGAACATGCTACCCCACTG+TGG | + | chr4.4:45530706-45530725 | None:intergenic | 55.0% | |
| GACTCCAGCGTTACCAACGT+CGG | + | chr4.4:45529273-45529292 | None:intergenic | 55.0% | |
| GCTGGTTGGGGTAATATGGG+TGG | - | chr4.4:45529551-45529570 | MS.gene08666:CDS | 55.0% | |
| GGTTGGGGTAATATGGGTGG+TGG | - | chr4.4:45529554-45529573 | MS.gene08666:CDS | 55.0% | |
| GTTGGAGCACAAGCAGCATG+TGG | - | chr4.4:45530478-45530497 | MS.gene08666:CDS | 55.0% | |
| TCACCAGGAAGCTCCATGCA+TGG | - | chr4.4:45528996-45529015 | MS.gene08666:CDS | 55.0% | |
| ! | TGGTAACGCTGGAGTCGCTT+CGG | - | chr4.4:45529277-45529296 | MS.gene08666:CDS | 55.0% |
| GCTGGAGTCGCTTCGGTTTC+AGG | - | chr4.4:45529284-45529303 | MS.gene08666:CDS | 60.0% | |
| TCGGCATGCGAGGAAGGCTA+TGG | - | chr4.4:45530356-45530375 | MS.gene08666:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 45528978 | 45530900 | 45528978 | ID=MS.gene08666 |
| chr4.4 | mRNA | 45528978 | 45530900 | 45528978 | ID=MS.gene08666.t1;Parent=MS.gene08666 |
| chr4.4 | exon | 45530091 | 45530900 | 45530091 | ID=MS.gene08666.t1.exon1;Parent=MS.gene08666.t1 |
| chr4.4 | CDS | 45530091 | 45530900 | 45530091 | ID=cds.MS.gene08666.t1;Parent=MS.gene08666.t1 |
| chr4.4 | exon | 45529853 | 45529968 | 45529853 | ID=MS.gene08666.t1.exon2;Parent=MS.gene08666.t1 |
| chr4.4 | CDS | 45529853 | 45529968 | 45529853 | ID=cds.MS.gene08666.t1;Parent=MS.gene08666.t1 |
| chr4.4 | exon | 45528978 | 45529632 | 45528978 | ID=MS.gene08666.t1.exon3;Parent=MS.gene08666.t1 |
| chr4.4 | CDS | 45528978 | 45529632 | 45528978 | ID=cds.MS.gene08666.t1;Parent=MS.gene08666.t1 |
| Gene Sequence |
| Protein sequence |
