Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98061.t1 | XP_003614161.1 | 98.9 | 368 | 4 | 0 | 1 | 368 | 1 | 368 | 5.10E-198 | 700.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98061.t1 | Q9ZPR4 | 64.1 | 373 | 124 | 4 | 17 | 381 | 27 | 397 | 5.4e-116 | 419.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98061.t1 | G7JZ40 | 98.9 | 368 | 4 | 0 | 1 | 368 | 1 | 368 | 3.7e-198 | 700.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene98061 | MS.gene071246 | PPI |
| MS.gene98061 | MS.gene067486 | PPI |
| MS.gene92350 | MS.gene98061 | PPI |
| MS.gene98061 | MS.gene83528 | PPI |
| MS.gene90371 | MS.gene98061 | PPI |
| MS.gene98061 | MS.gene024949 | PPI |
| MS.gene98061 | MS.gene90372 | PPI |
| MS.gene98061 | MS.gene046935 | PPI |
| MS.gene40181 | MS.gene98061 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98061.t1 | MTR_5g045590 | 98.913 | 368 | 4 | 0 | 1 | 368 | 1 | 368 | 0.0 | 747 |
| MS.gene98061.t1 | MTR_2g105270 | 53.483 | 402 | 139 | 5 | 20 | 381 | 31 | 424 | 2.52e-130 | 382 |
| MS.gene98061.t1 | MTR_2g105270 | 53.714 | 350 | 114 | 5 | 20 | 329 | 31 | 372 | 5.96e-109 | 326 |
| MS.gene98061.t1 | MTR_2g105270 | 51.940 | 335 | 113 | 5 | 20 | 314 | 31 | 357 | 2.14e-98 | 297 |
| MS.gene98061.t1 | MTR_5g005240 | 42.711 | 391 | 175 | 7 | 19 | 364 | 14 | 400 | 2.19e-92 | 285 |
| MS.gene98061.t1 | MTR_8g088670 | 40.691 | 376 | 167 | 8 | 32 | 380 | 50 | 396 | 3.42e-79 | 250 |
| MS.gene98061.t1 | MTR_1g040495 | 41.813 | 342 | 152 | 6 | 40 | 363 | 15 | 327 | 5.08e-77 | 243 |
| MS.gene98061.t1 | MTR_8g094880 | 38.718 | 390 | 166 | 8 | 22 | 363 | 18 | 382 | 9.75e-72 | 231 |
| MS.gene98061.t1 | MTR_8g094905 | 38.718 | 390 | 166 | 8 | 22 | 363 | 18 | 382 | 9.75e-72 | 231 |
| MS.gene98061.t1 | MTR_1g076210 | 42.416 | 356 | 158 | 6 | 31 | 363 | 16 | 347 | 6.69e-71 | 227 |
| MS.gene98061.t1 | MTR_1g093280 | 42.416 | 356 | 158 | 6 | 31 | 363 | 16 | 347 | 6.69e-71 | 227 |
| MS.gene98061.t1 | MTR_1g106065 | 36.292 | 383 | 198 | 7 | 22 | 365 | 3 | 378 | 4.79e-69 | 223 |
| MS.gene98061.t1 | MTR_7g096170 | 40.111 | 359 | 170 | 5 | 32 | 369 | 17 | 351 | 3.47e-66 | 214 |
| MS.gene98061.t1 | MTR_7g096170 | 40.111 | 359 | 170 | 5 | 32 | 369 | 17 | 351 | 1.28e-65 | 214 |
| MS.gene98061.t1 | MTR_8g088670 | 40.323 | 310 | 130 | 7 | 32 | 314 | 50 | 331 | 7.07e-60 | 197 |
| MS.gene98061.t1 | MTR_8g088670 | 39.490 | 314 | 135 | 7 | 32 | 318 | 50 | 335 | 7.56e-60 | 197 |
| MS.gene98061.t1 | MTR_7g096170 | 40.252 | 318 | 145 | 5 | 32 | 328 | 17 | 310 | 2.52e-54 | 182 |
| MS.gene98061.t1 | MTR_7g096170 | 42.308 | 234 | 111 | 3 | 136 | 369 | 45 | 254 | 6.55e-40 | 144 |
| MS.gene98061.t1 | MTR_1g040475 | 40.796 | 201 | 103 | 3 | 27 | 211 | 4 | 204 | 6.73e-34 | 126 |
| MS.gene98061.t1 | MTR_1g076220 | 35.638 | 188 | 67 | 2 | 176 | 363 | 54 | 187 | 4.47e-26 | 105 |
| MS.gene98061.t1 | MTR_1g093370 | 49.438 | 89 | 45 | 0 | 275 | 363 | 37 | 125 | 2.77e-20 | 87.8 |
| MS.gene98061.t1 | MTR_2g059110 | 46.753 | 77 | 41 | 0 | 31 | 107 | 8 | 84 | 4.07e-17 | 76.6 |
| MS.gene98061.t1 | MTR_2g059120 | 53.968 | 63 | 29 | 0 | 45 | 107 | 20 | 82 | 2.49e-14 | 68.9 |
| MS.gene98061.t1 | MTR_2g100150 | 37.086 | 151 | 75 | 6 | 36 | 181 | 12 | 147 | 7.45e-14 | 69.3 |
| MS.gene98061.t1 | MTR_1g055050 | 42.991 | 107 | 58 | 2 | 121 | 225 | 33 | 138 | 3.84e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98061.t1 | AT2G03620 | 63.807 | 373 | 125 | 4 | 17 | 381 | 27 | 397 | 4.73e-149 | 428 |
| MS.gene98061.t1 | AT2G03620 | 63.807 | 373 | 125 | 4 | 17 | 381 | 27 | 397 | 4.73e-149 | 428 |
| MS.gene98061.t1 | AT1G80900 | 55.469 | 384 | 121 | 3 | 20 | 365 | 32 | 403 | 5.66e-137 | 398 |
| MS.gene98061.t1 | AT1G80900 | 55.469 | 384 | 121 | 3 | 20 | 365 | 32 | 403 | 5.66e-137 | 398 |
| MS.gene98061.t1 | AT1G16010 | 59.016 | 366 | 119 | 4 | 28 | 365 | 40 | 402 | 8.94e-137 | 398 |
| MS.gene98061.t1 | AT1G16010 | 59.016 | 366 | 119 | 4 | 28 | 365 | 40 | 402 | 8.94e-137 | 398 |
| MS.gene98061.t1 | AT1G16010 | 59.016 | 366 | 119 | 4 | 28 | 365 | 40 | 402 | 8.94e-137 | 398 |
| MS.gene98061.t1 | AT3G19640 | 41.866 | 418 | 162 | 10 | 40 | 387 | 46 | 452 | 7.82e-84 | 264 |
| MS.gene98061.t1 | AT5G09690 | 42.135 | 356 | 164 | 3 | 26 | 364 | 25 | 355 | 6.09e-83 | 258 |
| MS.gene98061.t1 | AT5G09690 | 42.135 | 356 | 164 | 3 | 26 | 364 | 14 | 344 | 1.34e-82 | 257 |
| MS.gene98061.t1 | AT5G09690 | 42.135 | 356 | 164 | 3 | 26 | 364 | 25 | 355 | 1.60e-82 | 258 |
| MS.gene98061.t1 | AT5G09690 | 42.424 | 330 | 148 | 3 | 26 | 338 | 14 | 318 | 6.34e-73 | 231 |
| MS.gene98061.t1 | AT5G09690 | 42.424 | 330 | 148 | 3 | 26 | 338 | 25 | 329 | 9.89e-73 | 231 |
| MS.gene98061.t1 | AT5G09690 | 42.424 | 330 | 148 | 3 | 26 | 338 | 25 | 329 | 9.89e-73 | 231 |
| MS.gene98061.t1 | AT5G09690 | 42.424 | 330 | 148 | 3 | 26 | 338 | 14 | 318 | 1.10e-72 | 230 |
| MS.gene98061.t1 | AT5G09690 | 42.424 | 330 | 148 | 3 | 26 | 338 | 14 | 318 | 1.22e-72 | 229 |
| MS.gene98061.t1 | AT5G09690 | 42.424 | 330 | 148 | 3 | 26 | 338 | 25 | 329 | 1.58e-72 | 230 |
| MS.gene98061.t1 | AT3G58970 | 38.611 | 360 | 174 | 5 | 32 | 364 | 56 | 395 | 7.31e-72 | 231 |
| MS.gene98061.t1 | AT5G64560 | 41.834 | 349 | 157 | 4 | 40 | 364 | 26 | 352 | 4.31e-63 | 207 |
| MS.gene98061.t1 | AT5G64560 | 40.510 | 353 | 156 | 5 | 40 | 364 | 26 | 352 | 7.97e-62 | 203 |
| MS.gene98061.t1 | AT5G09690 | 38.081 | 344 | 156 | 5 | 38 | 364 | 26 | 329 | 1.25e-60 | 200 |
| MS.gene98061.t1 | AT5G09690 | 46.047 | 215 | 95 | 2 | 26 | 223 | 14 | 224 | 2.11e-53 | 179 |
| MS.gene98061.t1 | AT5G09690 | 46.047 | 215 | 95 | 2 | 26 | 223 | 25 | 235 | 2.60e-53 | 179 |
| MS.gene98061.t1 | AT5G09690 | 46.047 | 215 | 95 | 2 | 26 | 223 | 25 | 235 | 2.60e-53 | 179 |
| MS.gene98061.t1 | AT5G09690 | 46.047 | 215 | 95 | 2 | 26 | 223 | 25 | 235 | 2.60e-53 | 179 |
| MS.gene98061.t1 | AT5G09720 | 39.427 | 279 | 138 | 8 | 36 | 301 | 16 | 276 | 2.94e-47 | 163 |
| MS.gene98061.t1 | AT5G09720 | 39.427 | 279 | 138 | 8 | 36 | 301 | 16 | 276 | 2.94e-47 | 163 |
| MS.gene98061.t1 | AT4G28580 | 32.337 | 368 | 190 | 6 | 29 | 372 | 44 | 376 | 3.13e-46 | 163 |
Find 89 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATCTTCCCTTTGAATTT+AGG | 0.088653 | 5.4:+36149604 | MS.gene98061:CDS |
| TGATCTTCCCTTTGAATTTA+GGG | 0.214507 | 5.4:+36149605 | MS.gene98061:CDS |
| GCCGCCGTAGCAGGAGTATT+TGG | 0.240198 | 5.4:+36151137 | MS.gene98061:CDS |
| ATTTATCCTTCTTCCATATT+AGG | 0.249449 | 5.4:+36149115 | MS.gene98061:CDS |
| AGCCATCTCCCTTCCTAATA+TGG | 0.295338 | 5.4:-36149128 | None:intergenic |
| TTCTAGAGATCTTCGACTAT+TGG | 0.307849 | 5.4:+36149081 | MS.gene98061:CDS |
| TCCCTTTGAATTTAGGGCTC+TGG | 0.324784 | 5.4:+36149611 | MS.gene98061:CDS |
| GAACGTGTTCGAAGATTTAA+AGG | 0.326254 | 5.4:+36150331 | MS.gene98061:CDS |
| TTCCATGACCTCTCTGCTTC+AGG | 0.330823 | 5.4:-36148970 | None:intergenic |
| AATCGCAGGGCTGGTATAAA+AGG | 0.334220 | 5.4:+36148947 | MS.gene98061:CDS |
| ATTGGAAATTCAAGTAAATA+TGG | 0.367253 | 5.4:+36150694 | MS.gene98061:CDS |
| GAAGAAGGATAAATGAATTT+CGG | 0.372060 | 5.4:-36149106 | None:intergenic |
| ATCTATCAGTACTCTCCTTC+TGG | 0.372524 | 5.4:+36150309 | MS.gene98061:CDS |
| AGTAAATATGGTAGTTCAAC+GGG | 0.377045 | 5.4:+36150706 | MS.gene98061:CDS |
| CCAAGGACTTTCAGCGGCAT+TGG | 0.377986 | 5.4:+36150676 | MS.gene98061:CDS |
| CAATGGCATCGTGATTGAAA+TGG | 0.382554 | 5.4:-36151438 | None:intergenic |
| TTCAATCACGATGCCATTGT+TGG | 0.402108 | 5.4:+36151442 | MS.gene98061:CDS |
| GCAATATTTGCCGCCGTAGC+AGG | 0.413443 | 5.4:+36151128 | MS.gene98061:CDS |
| ATGCACATCTTTAGATTCTC+AGG | 0.428704 | 5.4:+36149653 | MS.gene98061:CDS |
| ATATCCCGTGCTAGATGAAC+TGG | 0.441183 | 5.4:+36150282 | MS.gene98061:CDS |
| ATTTGAAAACAATCATTTGA+AGG | 0.441921 | 5.4:-36150574 | None:intergenic |
| TTTCAAATTCGTTCACCATC+AGG | 0.446404 | 5.4:+36150589 | MS.gene98061:CDS |
| AATGGCATCGTGATTGAAAT+GGG | 0.447144 | 5.4:-36151437 | None:intergenic |
| GAGGTCATGGAAGTCGGTCT+TGG | 0.450393 | 5.4:+36148981 | MS.gene98061:CDS |
| TTGTCAACCTTGAACAAATC+CGG | 0.460150 | 5.4:+36149155 | MS.gene98061:CDS |
| GATTTGACAGGTAAATGAAC+TGG | 0.464980 | 5.4:+36150249 | MS.gene98061:intron |
| CCAATGCCGCTGAAAGTCCT+TGG | 0.466774 | 5.4:-36150676 | None:intergenic |
| TAGGGCTCTGGAGTTAGCTC+TGG | 0.466890 | 5.4:+36149623 | MS.gene98061:CDS |
| ACGGAATTATGGAGACATCT+TGG | 0.475893 | 5.4:-36151471 | None:intergenic |
| TTTGACTCAGCGAGTTCAAA+AGG | 0.483080 | 5.4:+36150366 | MS.gene98061:CDS |
| TTAACAGGCAAGCGAATCGC+AGG | 0.485254 | 5.4:+36148933 | MS.gene98061:CDS |
| TCACCAGAGCGGTCACTTAG+TGG | 0.486329 | 5.4:+36150640 | MS.gene98061:CDS |
| CTCCAGAGCCCTAAATTCAA+AGG | 0.486570 | 5.4:-36149613 | None:intergenic |
| GGCCTGAAGCAGAGAGGTCA+TGG | 0.488760 | 5.4:+36148968 | MS.gene98061:CDS |
| TCCAGAGCCCTAAATTCAAA+GGG | 0.491102 | 5.4:-36149612 | None:intergenic |
| TTATACACCGGATTTGTTCA+AGG | 0.499716 | 5.4:-36149162 | None:intergenic |
| TCCCTTCCTAATATGGAAGA+AGG | 0.500264 | 5.4:-36149121 | None:intergenic |
| TCCAAATACTCCTGCTACGG+CGG | 0.504023 | 5.4:-36151138 | None:intergenic |
| AATAGTCGAAGATCTCTAGA+AGG | 0.505041 | 5.4:-36149079 | None:intergenic |
| AGTGACCGCTCTGGTGAAGT+AGG | 0.509078 | 5.4:-36150634 | None:intergenic |
| ACGGTACTGTTGGTCGGTAC+AGG | 0.509486 | 5.4:+36149221 | MS.gene98061:CDS |
| GTGACCGCTCTGGTGAAGTA+GGG | 0.510030 | 5.4:-36150633 | None:intergenic |
| ACAGGACAATATTATGCAAT+CGG | 0.514813 | 5.4:+36149239 | MS.gene98061:CDS |
| GCATCTCAAACTTTATCAGA+AGG | 0.516139 | 5.4:-36151079 | None:intergenic |
| TCCTTCTTCCATATTAGGAA+GGG | 0.517517 | 5.4:+36149120 | MS.gene98061:CDS |
| ATCCTTCTTCCATATTAGGA+AGG | 0.519036 | 5.4:+36149119 | MS.gene98061:CDS |
| ACAGGTAAATGAACTGGAGA+TGG | 0.521690 | 5.4:+36150255 | MS.gene98061:intron |
| TGATGAAATAGAACATCTCA+TGG | 0.526083 | 5.4:+36150489 | MS.gene98061:CDS |
| TCTTACAGCAGCCACATTGG+TGG | 0.526789 | 5.4:+36151103 | MS.gene98061:CDS |
| AGGCAAGCGAATCGCAGGGC+TGG | 0.527115 | 5.4:+36148938 | MS.gene98061:CDS |
| CTTGTCAAGTGTCACAATCT+CGG | 0.527722 | 5.4:-36149029 | None:intergenic |
| AGATGTGTCTGACTGAGAAA+AGG | 0.536746 | 5.4:+36150533 | MS.gene98061:CDS |
| TCAGCCGCTAGAAATGTTGC+TGG | 0.537626 | 5.4:+36150753 | MS.gene98061:CDS |
| AAGTAAATATGGTAGTTCAA+CGG | 0.547346 | 5.4:+36150705 | MS.gene98061:CDS |
| AATTCACTCGACGGTACTGT+TGG | 0.559813 | 5.4:+36149211 | MS.gene98061:CDS |
| CATTCCAAATACTCCTGCTA+CGG | 0.565325 | 5.4:-36151141 | None:intergenic |
| AGCCCACTAAGTGACCGCTC+TGG | 0.568756 | 5.4:-36150643 | None:intergenic |
| CACCAGAGCGGTCACTTAGT+GGG | 0.569271 | 5.4:+36150641 | MS.gene98061:CDS |
| TTCCATATTAGGAAGGGAGA+TGG | 0.579126 | 5.4:+36149126 | MS.gene98061:CDS |
| GTGGGCTTCAGATGTTGCCA+AGG | 0.580454 | 5.4:+36150659 | MS.gene98061:CDS |
| CGAGATTGTGACACTTGACA+AGG | 0.585644 | 5.4:+36149030 | MS.gene98061:CDS |
| GCTTCTTACAGCAGCCACAT+TGG | 0.587792 | 5.4:+36151100 | MS.gene98061:CDS |
| ATCTTGGCTTGCACCAACAA+TGG | 0.589169 | 5.4:-36151455 | None:intergenic |
| TACTCTCAACACATTATCGT+CGG | 0.589716 | 5.4:+36150801 | MS.gene98061:CDS |
| TGAGGCCAGTTCATCTAGCA+CGG | 0.589991 | 5.4:-36150287 | None:intergenic |
| AGCAGAGAGGTCATGGAAGT+CGG | 0.592681 | 5.4:+36148975 | MS.gene98061:CDS |
| GAGGCCAGTTCATCTAGCAC+GGG | 0.606072 | 5.4:-36150286 | None:intergenic |
| ATCTTCGAACACGTTCCAGA+AGG | 0.609844 | 5.4:-36150324 | None:intergenic |
| ATTCATGAGGATGACTTCAT+CGG | 0.612801 | 5.4:-36149191 | None:intergenic |
| GAACTCGCTGAGTCAAAGCA+AGG | 0.614782 | 5.4:-36150360 | None:intergenic |
| CATGGATGATGATGGTGACA+TGG | 0.616228 | 5.4:+36150507 | MS.gene98061:CDS |
| TGACCGCTCTGGTGAAGTAG+GGG | 0.617312 | 5.4:-36150632 | None:intergenic |
| GTTCATCTGATAACACAGAA+AGG | 0.620976 | 5.4:+36150728 | MS.gene98061:CDS |
| GAACATCTCATGGATGATGA+TGG | 0.623663 | 5.4:+36150499 | MS.gene98061:CDS |
| TTTGAAATCACTCTACCTGA+TGG | 0.628200 | 5.4:-36150604 | None:intergenic |
| TAACAGGCAAGCGAATCGCA+GGG | 0.633785 | 5.4:+36148934 | MS.gene98061:CDS |
| CACTCGACGGTACTGTTGGT+CGG | 0.637311 | 5.4:+36149215 | MS.gene98061:CDS |
| TGAGATGTTCTATTTCATCA+CGG | 0.640698 | 5.4:-36150486 | None:intergenic |
| AAGGAGAGTACTGATAGATG+AGG | 0.645637 | 5.4:-36150305 | None:intergenic |
| TACCGTCGAGTGAATTCATG+AGG | 0.649158 | 5.4:-36149204 | None:intergenic |
| ATGTTGCCAAGGACTTTCAG+CGG | 0.651077 | 5.4:+36150670 | MS.gene98061:CDS |
| GCTTCCAGCAACATTTCTAG+CGG | 0.661159 | 5.4:-36150757 | None:intergenic |
| CATCGGCAGTGATTATACAC+CGG | 0.664675 | 5.4:-36149174 | None:intergenic |
| ATCCTCATGAATTCACTCGA+CGG | 0.675706 | 5.4:+36149202 | MS.gene98061:CDS |
| AAATATTGCAGCCACCAATG+TGG | 0.690869 | 5.4:-36151114 | None:intergenic |
| ATGGCATCGTGATTGAAATG+GGG | 0.692181 | 5.4:-36151436 | None:intergenic |
| AATGCAATGGAAGAAACACA+AGG | 0.739174 | 5.4:+36148875 | None:intergenic |
| ATAAAAGGCCTGAAGCAGAG+AGG | 0.740166 | 5.4:+36148962 | MS.gene98061:CDS |
| CAGCCCCTACTTCACCAGAG+CGG | 0.766346 | 5.4:+36150629 | MS.gene98061:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAATATGTTATATTAATA+AGG | + | chr5.4:36150221-36150240 | MS.gene98061:intron | 10.0% |
| !! | AAGAAAGAGAATTATAATTA+AGG | - | chr5.4:36150414-36150433 | None:intergenic | 15.0% |
| !! | AGCATACATAATATTTATAT+CGG | + | chr5.4:36149319-36149338 | MS.gene98061:intron | 15.0% |
| !! | ATATAATATAAAGTGACAAA+AGG | - | chr5.4:36150990-36151009 | None:intergenic | 15.0% |
| !! | CATTATGTTTACATTAAAAT+TGG | + | chr5.4:36149753-36149772 | MS.gene98061:intron | 15.0% |
| !! | TTTACATATTTATCTGTTTA+TGG | + | chr5.4:36151365-36151384 | MS.gene98061:intron | 15.0% |
| !!! | AATTTTATTAAAAAGACATC+AGG | - | chr5.4:36150076-36150095 | None:intergenic | 15.0% |
| !! | ATTGGAAATTCAAGTAAATA+TGG | + | chr5.4:36150694-36150713 | MS.gene98061:CDS | 20.0% |
| !! | ATTTGAAAACAATCATTTGA+AGG | - | chr5.4:36150577-36150596 | None:intergenic | 20.0% |
| !! | CTAAATACATAATAAGTCAT+TGG | + | chr5.4:36150159-36150178 | MS.gene98061:intron | 20.0% |
| !! | GTAACTTATATTTAGTTATC+AGG | + | chr5.4:36150462-36150481 | MS.gene98061:intron | 20.0% |
| !!! | AATTTGGTTTTGTTAATTAC+TGG | + | chr5.4:36151203-36151222 | MS.gene98061:intron | 20.0% |
| !!! | AGATTTTCTCAACATAAAAT+TGG | + | chr5.4:36150937-36150956 | MS.gene98061:CDS | 20.0% |
| !!! | GTATCTAAAATAGAATAGTA+AGG | - | chr5.4:36151255-36151274 | None:intergenic | 20.0% |
| ! | AAATATAAGTTACTAGTTGC+AGG | - | chr5.4:36150455-36150474 | None:intergenic | 25.0% |
| ! | AAGTAAATATGGTAGTTCAA+CGG | + | chr5.4:36150705-36150724 | MS.gene98061:CDS | 25.0% |
| ! | ACAGATTCAATACAAAAATG+TGG | - | chr5.4:36149717-36149736 | None:intergenic | 25.0% |
| ! | ATTATAAACTATGTAGACCA+CGG | + | chr5.4:36151012-36151031 | MS.gene98061:intron | 25.0% |
| ! | ATTGATGTCTTGTGAAAATA+TGG | - | chr5.4:36150197-36150216 | None:intergenic | 25.0% |
| ! | ATTTATCCTTCTTCCATATT+AGG | + | chr5.4:36149115-36149134 | MS.gene98061:CDS | 25.0% |
| ! | CAGATAGATTGAAAAGTTTA+TGG | - | chr5.4:36151039-36151058 | None:intergenic | 25.0% |
| ! | GAAATCAGTAAGCAATTATA+TGG | - | chr5.4:36149571-36149590 | None:intergenic | 25.0% |
| ! | GAAGAAGGATAAATGAATTT+CGG | - | chr5.4:36149109-36149128 | None:intergenic | 25.0% |
| ! | TGAAAAATTTACAAGATTGC+AGG | - | chr5.4:36149914-36149933 | None:intergenic | 25.0% |
| ! | TTCACTTTGATGAAAATAGA+AGG | + | chr5.4:36149930-36149949 | MS.gene98061:intron | 25.0% |
| !! | AAATTCAAGAGCTTGAATTT+TGG | + | chr5.4:36150091-36150110 | MS.gene98061:intron | 25.0% |
| !! | CATTTTCATTAAACATCCTA+TGG | + | chr5.4:36149834-36149853 | MS.gene98061:intron | 25.0% |
| !! | TTTTCAATCTATCTGTTACA+GGG | + | chr5.4:36151044-36151063 | MS.gene98061:intron | 25.0% |
| !!! | GTTTTGTTAATTACTGGAAT+TGG | + | chr5.4:36151209-36151228 | MS.gene98061:intron | 25.0% |
| !!! | TACATGAGTATGATTTTAAC+AGG | + | chr5.4:36148918-36148937 | MS.gene98061:CDS | 25.0% |
| AAAACAGTGTTTAGGCTTAA+CGG | + | chr5.4:36149884-36149903 | MS.gene98061:intron | 30.0% | |
| ACAGGACAATATTATGCAAT+CGG | + | chr5.4:36149239-36149258 | MS.gene98061:CDS | 30.0% | |
| AGGGAGAGAATATAATGTTT+AGG | + | chr5.4:36149997-36150016 | MS.gene98061:intron | 30.0% | |
| AGTAAATATGGTAGTTCAAC+GGG | + | chr5.4:36150706-36150725 | MS.gene98061:CDS | 30.0% | |
| ATGATCTTCCCTTTGAATTT+AGG | + | chr5.4:36149604-36149623 | MS.gene98061:CDS | 30.0% | |
| GATTCAATACAAAAATGTGG+AGG | - | chr5.4:36149714-36149733 | None:intergenic | 30.0% | |
| GGATAAAAATTGATCAGGAT+GGG | + | chr5.4:36149002-36149021 | MS.gene98061:CDS | 30.0% | |
| GTCTTGGATAAAAATTGATC+AGG | + | chr5.4:36148997-36149016 | MS.gene98061:CDS | 30.0% | |
| TCAATGAAGATAAGCAATGT+GGG | - | chr5.4:36150871-36150890 | None:intergenic | 30.0% | |
| TGAGATGTTCTATTTCATCA+CGG | - | chr5.4:36150489-36150508 | None:intergenic | 30.0% | |
| TGATCTTCCCTTTGAATTTA+GGG | + | chr5.4:36149605-36149624 | MS.gene98061:CDS | 30.0% | |
| TGATGAAATAGAACATCTCA+TGG | + | chr5.4:36150489-36150508 | MS.gene98061:CDS | 30.0% | |
| TGGATAAAAATTGATCAGGA+TGG | + | chr5.4:36149001-36149020 | MS.gene98061:CDS | 30.0% | |
| ! | AATAAGGATCTTGATTTGAC+AGG | + | chr5.4:36150237-36150256 | MS.gene98061:intron | 30.0% |
| ! | ATAGTAGTGGAAGAATTATG+AGG | + | chr5.4:36149362-36149381 | MS.gene98061:intron | 30.0% |
| ! | CTTTTCAATCTATCTGTTAC+AGG | + | chr5.4:36151043-36151062 | MS.gene98061:intron | 30.0% |
| ! | TAGTAGTGGAAGAATTATGA+GGG | + | chr5.4:36149363-36149382 | MS.gene98061:intron | 30.0% |
| ! | TGAAATAGGATGTCTTTTGT+TGG | + | chr5.4:36149403-36149422 | MS.gene98061:intron | 30.0% |
| ! | TGCATTTTATCAAAGATGAC+AGG | + | chr5.4:36151320-36151339 | MS.gene98061:intron | 30.0% |
| !! | TGACCAGAAACTTTACTTTT+TGG | + | chr5.4:36149683-36149702 | MS.gene98061:intron | 30.0% |
| !! | TTCTAGTTTACAGCAAAAAG+AGG | - | chr5.4:36149296-36149315 | None:intergenic | 30.0% |
| !!! | ACCAGAAACTTTACTTTTTG+GGG | + | chr5.4:36149685-36149704 | MS.gene98061:intron | 30.0% |
| !!! | GACCAGAAACTTTACTTTTT+GGG | + | chr5.4:36149684-36149703 | MS.gene98061:intron | 30.0% |
| AATAGTCGAAGATCTCTAGA+AGG | - | chr5.4:36149082-36149101 | None:intergenic | 35.0% | |
| AATGGCATCGTGATTGAAAT+GGG | - | chr5.4:36151440-36151459 | None:intergenic | 35.0% | |
| ATCCTTCTTCCATATTAGGA+AGG | + | chr5.4:36149119-36149138 | MS.gene98061:CDS | 35.0% | |
| ATCTTCATTGACACTCTTGT+TGG | + | chr5.4:36150880-36150899 | MS.gene98061:intron | 35.0% | |
| ATGCACATCTTTAGATTCTC+AGG | + | chr5.4:36149653-36149672 | MS.gene98061:CDS | 35.0% | |
| ATTCATGAGGATGACTTCAT+CGG | - | chr5.4:36149194-36149213 | None:intergenic | 35.0% | |
| ATTGAAAAGTTTATGGTCCG+TGG | - | chr5.4:36151032-36151051 | None:intergenic | 35.0% | |
| CAACTCACAAAACAGTGTTT+AGG | + | chr5.4:36149876-36149895 | MS.gene98061:intron | 35.0% | |
| CAGAGAGAAAAATCTGGTAA+GGG | + | chr5.4:36149265-36149284 | MS.gene98061:intron | 35.0% | |
| CTACTCTTCTGGATTCAATT+TGG | + | chr5.4:36151187-36151206 | MS.gene98061:intron | 35.0% | |
| GAAATTGCAGGAAAAACCAT+AGG | - | chr5.4:36149853-36149872 | None:intergenic | 35.0% | |
| GAACGTGTTCGAAGATTTAA+AGG | + | chr5.4:36150331-36150350 | MS.gene98061:CDS | 35.0% | |
| GATTTGACAGGTAAATGAAC+TGG | + | chr5.4:36150249-36150268 | MS.gene98061:intron | 35.0% | |
| GCACTATTAGGAAATAGTAG+TGG | + | chr5.4:36149349-36149368 | MS.gene98061:intron | 35.0% | |
| GCATCTCAAACTTTATCAGA+AGG | - | chr5.4:36151082-36151101 | None:intergenic | 35.0% | |
| GTCAATGAAGATAAGCAATG+TGG | - | chr5.4:36150872-36150891 | None:intergenic | 35.0% | |
| GTTCATCTGATAACACAGAA+AGG | + | chr5.4:36150728-36150747 | MS.gene98061:CDS | 35.0% | |
| TACTCTCAACACATTATCGT+CGG | + | chr5.4:36150801-36150820 | MS.gene98061:CDS | 35.0% | |
| TCCCCAAAAAGTAAAGTTTC+TGG | - | chr5.4:36149689-36149708 | None:intergenic | 35.0% | |
| TCCTTCTTCCATATTAGGAA+GGG | + | chr5.4:36149120-36149139 | MS.gene98061:CDS | 35.0% | |
| TGTAGCACTCAAGATATGTA+GGG | + | chr5.4:36149978-36149997 | MS.gene98061:intron | 35.0% | |
| TTGTAGCACTCAAGATATGT+AGG | + | chr5.4:36149977-36149996 | MS.gene98061:intron | 35.0% | |
| TTGTCAACCTTGAACAAATC+CGG | + | chr5.4:36149155-36149174 | MS.gene98061:CDS | 35.0% | |
| TTTCAAATTCGTTCACCATC+AGG | + | chr5.4:36150589-36150608 | MS.gene98061:CDS | 35.0% | |
| ! | ATGCTGTTGAGTTTTCATTC+TGG | - | chr5.4:36151290-36151309 | None:intergenic | 35.0% |
| ! | TTATACACCGGATTTGTTCA+AGG | - | chr5.4:36149165-36149184 | None:intergenic | 35.0% |
| ! | TTCTAGAGATCTTCGACTAT+TGG | + | chr5.4:36149081-36149100 | MS.gene98061:CDS | 35.0% |
| ! | TTTGAAATCACTCTACCTGA+TGG | - | chr5.4:36150607-36150626 | None:intergenic | 35.0% |
| !! | TCAGTTTTTGACTACTCTTC+TGG | + | chr5.4:36151176-36151195 | MS.gene98061:intron | 35.0% |
| AAATATTGCAGCCACCAATG+TGG | - | chr5.4:36151117-36151136 | None:intergenic | 40.0% | |
| ACAGGTAAATGAACTGGAGA+TGG | + | chr5.4:36150255-36150274 | MS.gene98061:intron | 40.0% | |
| AGAAGGCTGCTAAAATCTCT+AGG | + | chr5.4:36149947-36149966 | MS.gene98061:intron | 40.0% | |
| AGATGTGTCTGACTGAGAAA+AGG | + | chr5.4:36150533-36150552 | MS.gene98061:CDS | 40.0% | |
| ATCCTCATGAATTCACTCGA+CGG | + | chr5.4:36149202-36149221 | MS.gene98061:CDS | 40.0% | |
| ATCGGAGTTGTAGCACTATT+AGG | + | chr5.4:36149337-36149356 | MS.gene98061:intron | 40.0% | |
| ATCTATCAGTACTCTCCTTC+TGG | + | chr5.4:36150309-36150328 | MS.gene98061:CDS | 40.0% | |
| ATGGCATCGTGATTGAAATG+GGG | - | chr5.4:36151439-36151458 | None:intergenic | 40.0% | |
| CAATGGCATCGTGATTGAAA+TGG | - | chr5.4:36151441-36151460 | None:intergenic | 40.0% | |
| CATTCCAAATACTCCTGCTA+CGG | - | chr5.4:36151144-36151163 | None:intergenic | 40.0% | |
| CCAGAGAGAAAAATCTGGTA+AGG | + | chr5.4:36149264-36149283 | MS.gene98061:intron | 40.0% | |
| CTTGTCAAGTGTCACAATCT+CGG | - | chr5.4:36149032-36149051 | None:intergenic | 40.0% | |
| GAACATCTCATGGATGATGA+TGG | + | chr5.4:36150499-36150518 | MS.gene98061:CDS | 40.0% | |
| TCCAGAGCCCTAAATTCAAA+GGG | - | chr5.4:36149615-36149634 | None:intergenic | 40.0% | |
| TCCCTTCCTAATATGGAAGA+AGG | - | chr5.4:36149124-36149143 | None:intergenic | 40.0% | |
| TTCAATCACGATGCCATTGT+TGG | + | chr5.4:36151442-36151461 | MS.gene98061:CDS | 40.0% | |
| TTCCATATTAGGAAGGGAGA+TGG | + | chr5.4:36149126-36149145 | MS.gene98061:CDS | 40.0% | |
| TTTGACTCAGCGAGTTCAAA+AGG | + | chr5.4:36150366-36150385 | MS.gene98061:CDS | 40.0% | |
| ! | CCTTACCAGATTTTTCTCTC+TGG | - | chr5.4:36149267-36149286 | None:intergenic | 40.0% |
| ! | GTTCAAAAGGTTGATCAACG+TGG | + | chr5.4:36150379-36150398 | MS.gene98061:intron | 40.0% |
| ! | TGTGAGTTGTCTGAAATTGC+AGG | - | chr5.4:36149865-36149884 | None:intergenic | 40.0% |
| !! | AAGGAGAGTACTGATAGATG+AGG | - | chr5.4:36150308-36150327 | None:intergenic | 40.0% |
| !!! | ATCCAAGTGCTGTTTTCACA+TGG | + | chr5.4:36151394-36151413 | MS.gene98061:intron | 40.0% |
| AATTCACTCGACGGTACTGT+TGG | + | chr5.4:36149211-36149230 | MS.gene98061:CDS | 45.0% | |
| AGCCATCTCCCTTCCTAATA+TGG | - | chr5.4:36149131-36149150 | None:intergenic | 45.0% | |
| AGCCATGTGAAAACAGCACT+TGG | - | chr5.4:36151399-36151418 | None:intergenic | 45.0% | |
| ATAAAAGGCCTGAAGCAGAG+AGG | + | chr5.4:36148962-36148981 | MS.gene98061:CDS | 45.0% | |
| ATATCCCGTGCTAGATGAAC+TGG | + | chr5.4:36150282-36150301 | MS.gene98061:CDS | 45.0% | |
| ATCTTCGAACACGTTCCAGA+AGG | - | chr5.4:36150327-36150346 | None:intergenic | 45.0% | |
| ATGTTGCCAAGGACTTTCAG+CGG | + | chr5.4:36150670-36150689 | MS.gene98061:CDS | 45.0% | |
| CATCGGCAGTGATTATACAC+CGG | - | chr5.4:36149177-36149196 | None:intergenic | 45.0% | |
| CGAGATTGTGACACTTGACA+AGG | + | chr5.4:36149030-36149049 | MS.gene98061:CDS | 45.0% | |
| CTCCAGAGCCCTAAATTCAA+AGG | - | chr5.4:36149616-36149635 | None:intergenic | 45.0% | |
| GTGGAAGAATTATGAGGGTG+CGG | + | chr5.4:36149368-36149387 | MS.gene98061:intron | 45.0% | |
| TACCGTCGAGTGAATTCATG+AGG | - | chr5.4:36149207-36149226 | None:intergenic | 45.0% | |
| ! | AATCGCAGGGCTGGTATAAA+AGG | + | chr5.4:36148947-36148966 | MS.gene98061:CDS | 45.0% |
| ! | GCTTCCAGCAACATTTCTAG+CGG | - | chr5.4:36150760-36150779 | None:intergenic | 45.0% |
| ! | GGCATTGAGTGGTGTGAAAT+AGG | + | chr5.4:36149389-36149408 | MS.gene98061:intron | 45.0% |
| ! | TCCCTTTGAATTTAGGGCTC+TGG | + | chr5.4:36149611-36149630 | MS.gene98061:CDS | 45.0% |
| !! | ATCTTGGCTTGCACCAACAA+TGG | - | chr5.4:36151458-36151477 | None:intergenic | 45.0% |
| !! | CATGGATGATGATGGTGACA+TGG | + | chr5.4:36150507-36150526 | MS.gene98061:CDS | 45.0% |
| AGCAGAGAGGTCATGGAAGT+CGG | + | chr5.4:36148975-36148994 | MS.gene98061:CDS | 50.0% | |
| CGGCTCCAGAGAGAAAAATC+TGG | + | chr5.4:36149259-36149278 | MS.gene98061:CDS | 50.0% | |
| GAACTCGCTGAGTCAAAGCA+AGG | - | chr5.4:36150363-36150382 | None:intergenic | 50.0% | |
| GCTTCTTACAGCAGCCACAT+TGG | + | chr5.4:36151100-36151119 | MS.gene98061:CDS | 50.0% | |
| TAACAGGCAAGCGAATCGCA+GGG | + | chr5.4:36148934-36148953 | MS.gene98061:CDS | 50.0% | |
| TCAGCCGCTAGAAATGTTGC+TGG | + | chr5.4:36150753-36150772 | MS.gene98061:CDS | 50.0% | |
| TCCAAATACTCCTGCTACGG+CGG | - | chr5.4:36151141-36151160 | None:intergenic | 50.0% | |
| TCTTACAGCAGCCACATTGG+TGG | + | chr5.4:36151103-36151122 | MS.gene98061:CDS | 50.0% | |
| TGAGGCCAGTTCATCTAGCA+CGG | - | chr5.4:36150290-36150309 | None:intergenic | 50.0% | |
| TTAACAGGCAAGCGAATCGC+AGG | + | chr5.4:36148933-36148952 | MS.gene98061:CDS | 50.0% | |
| TTCCATGACCTCTCTGCTTC+AGG | - | chr5.4:36148973-36148992 | None:intergenic | 50.0% | |
| ACGGTACTGTTGGTCGGTAC+AGG | + | chr5.4:36149221-36149240 | MS.gene98061:CDS | 55.0% | |
| AGTGACCGCTCTGGTGAAGT+AGG | - | chr5.4:36150637-36150656 | None:intergenic | 55.0% | |
| CACCAGAGCGGTCACTTAGT+GGG | + | chr5.4:36150641-36150660 | MS.gene98061:CDS | 55.0% | |
| CACTCGACGGTACTGTTGGT+CGG | + | chr5.4:36149215-36149234 | MS.gene98061:CDS | 55.0% | |
| CCAAGGACTTTCAGCGGCAT+TGG | + | chr5.4:36150676-36150695 | MS.gene98061:CDS | 55.0% | |
| CCAATGCCGCTGAAAGTCCT+TGG | - | chr5.4:36150679-36150698 | None:intergenic | 55.0% | |
| GAGGCCAGTTCATCTAGCAC+GGG | - | chr5.4:36150289-36150308 | None:intergenic | 55.0% | |
| GAGGTCATGGAAGTCGGTCT+TGG | + | chr5.4:36148981-36149000 | MS.gene98061:CDS | 55.0% | |
| GCAATATTTGCCGCCGTAGC+AGG | + | chr5.4:36151128-36151147 | MS.gene98061:CDS | 55.0% | |
| GTGACCGCTCTGGTGAAGTA+GGG | - | chr5.4:36150636-36150655 | None:intergenic | 55.0% | |
| GTGGGCTTCAGATGTTGCCA+AGG | + | chr5.4:36150659-36150678 | MS.gene98061:CDS | 55.0% | |
| TCACCAGAGCGGTCACTTAG+TGG | + | chr5.4:36150640-36150659 | MS.gene98061:CDS | 55.0% | |
| TGACCGCTCTGGTGAAGTAG+GGG | - | chr5.4:36150635-36150654 | None:intergenic | 55.0% | |
| ! | TATGAGGGTGCGGCATTGAG+TGG | + | chr5.4:36149378-36149397 | MS.gene98061:intron | 55.0% |
| !! | TAGGGCTCTGGAGTTAGCTC+TGG | + | chr5.4:36149623-36149642 | MS.gene98061:CDS | 55.0% |
| AGCCCACTAAGTGACCGCTC+TGG | - | chr5.4:36150646-36150665 | None:intergenic | 60.0% | |
| CAGCCCCTACTTCACCAGAG+CGG | + | chr5.4:36150629-36150648 | MS.gene98061:CDS | 60.0% | |
| GGCCTGAAGCAGAGAGGTCA+TGG | + | chr5.4:36148968-36148987 | MS.gene98061:CDS | 60.0% | |
| !! | GCCGCCGTAGCAGGAGTATT+TGG | + | chr5.4:36151137-36151156 | MS.gene98061:CDS | 60.0% |
| AGGCAAGCGAATCGCAGGGC+TGG | + | chr5.4:36148938-36148957 | MS.gene98061:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 36148881 | 36151487 | 36148881 | ID=MS.gene98061 |
| chr5.4 | mRNA | 36148881 | 36151487 | 36148881 | ID=MS.gene98061.t1;Parent=MS.gene98061 |
| chr5.4 | exon | 36148881 | 36149280 | 36148881 | ID=MS.gene98061.t1.exon1;Parent=MS.gene98061.t1 |
| chr5.4 | CDS | 36148881 | 36149280 | 36148881 | ID=cds.MS.gene98061.t1;Parent=MS.gene98061.t1 |
| chr5.4 | exon | 36149604 | 36149674 | 36149604 | ID=MS.gene98061.t1.exon2;Parent=MS.gene98061.t1 |
| chr5.4 | CDS | 36149604 | 36149674 | 36149604 | ID=cds.MS.gene98061.t1;Parent=MS.gene98061.t1 |
| chr5.4 | exon | 36150259 | 36150387 | 36150259 | ID=MS.gene98061.t1.exon3;Parent=MS.gene98061.t1 |
| chr5.4 | CDS | 36150259 | 36150387 | 36150259 | ID=cds.MS.gene98061.t1;Parent=MS.gene98061.t1 |
| chr5.4 | exon | 36150484 | 36150822 | 36150484 | ID=MS.gene98061.t1.exon4;Parent=MS.gene98061.t1 |
| chr5.4 | CDS | 36150484 | 36150822 | 36150484 | ID=cds.MS.gene98061.t1;Parent=MS.gene98061.t1 |
| chr5.4 | exon | 36150911 | 36150958 | 36150911 | ID=MS.gene98061.t1.exon5;Parent=MS.gene98061.t1 |
| chr5.4 | CDS | 36150911 | 36150958 | 36150911 | ID=cds.MS.gene98061.t1;Parent=MS.gene98061.t1 |
| chr5.4 | exon | 36151065 | 36151174 | 36151065 | ID=MS.gene98061.t1.exon6;Parent=MS.gene98061.t1 |
| chr5.4 | CDS | 36151065 | 36151174 | 36151065 | ID=cds.MS.gene98061.t1;Parent=MS.gene98061.t1 |
| chr5.4 | exon | 36151421 | 36151487 | 36151421 | ID=MS.gene98061.t1.exon7;Parent=MS.gene98061.t1 |
| chr5.4 | CDS | 36151421 | 36151487 | 36151421 | ID=cds.MS.gene98061.t1;Parent=MS.gene98061.t1 |
| Gene Sequence |
| Protein sequence |
