AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98544

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98544.t1 MTR_5g085030 95.489 133 6 0 1 133 1 133 3.20e-88 255
MS.gene98544.t1 MTR_5g022710 73.333 135 35 1 1 135 1 134 1.06e-66 201
MS.gene98544.t1 MTR_5g022730 73.333 135 35 1 1 135 1 134 1.65e-66 201
MS.gene98544.t1 MTR_7g021400 70.896 134 38 1 2 135 3 135 5.54e-64 194
MS.gene98544.t1 MTR_7g094150 72.059 136 36 2 1 135 1 135 3.80e-63 192
MS.gene98544.t1 MTR_4g032400 69.118 136 42 0 2 137 9 144 1.73e-62 191
MS.gene98544.t1 MTR_7g094170 70.149 134 39 1 2 135 3 135 2.64e-61 187
MS.gene98544.t1 MTR_8g468480 67.883 137 44 0 1 137 1 137 1.97e-60 185
MS.gene98544.t1 MTR_5g082340 68.613 137 32 1 1 137 1 126 4.65e-58 179
MS.gene98544.t1 MTR_4g032510 66.917 133 38 1 3 135 5 131 1.70e-56 175
MS.gene98544.t1 MTR_7g021380 66.418 134 44 1 2 135 3 135 9.84e-56 173
MS.gene98544.t1 MTR_4g032450 66.667 135 43 2 2 135 21 154 1.66e-55 173
MS.gene98544.t1 MTR_4g032460 62.963 135 44 1 1 135 1 129 5.52e-53 166
MS.gene98544.t1 MTR_8g056060 65.185 135 45 2 2 135 3 136 1.19e-52 165
MS.gene98544.t1 MTR_7g094280 63.043 138 47 3 1 135 1 137 1.57e-51 162
MS.gene98544.t1 MTR_3g110048 61.765 136 49 2 2 135 3 137 3.49e-51 162
MS.gene98544.t1 MTR_7g094120 59.559 136 52 2 2 135 4 138 3.72e-51 162
MS.gene98544.t1 MTR_4g017860 49.721 179 48 2 1 137 23 201 1.45e-49 160
MS.gene98544.t1 MTR_4g032500 62.687 134 44 1 2 135 4 131 4.05e-49 156
MS.gene98544.t1 MTR_7g094310 60.870 138 40 3 1 135 1 127 1.16e-47 152
MS.gene98544.t1 MTR_4g033455 58.824 136 55 1 2 137 7 141 1.52e-46 150
MS.gene98544.t1 MTR_4g033460 56.618 136 58 1 2 137 7 141 1.34e-44 148
MS.gene98544.t1 MTR_4g033460 67.105 76 25 0 37 112 157 232 2.03e-27 103
MS.gene98544.t1 MTR_4g021390 54.745 137 58 2 2 138 5 137 9.57e-41 135
MS.gene98544.t1 MTR_4g131980 58.730 126 47 2 1 125 1 122 9.00e-38 127
MS.gene98544.t1 MTR_7g006370 51.825 137 56 3 2 138 5 131 3.56e-32 112
MS.gene98544.t1 MTR_7g094410 47.742 155 38 6 2 114 3 156 2.87e-31 111
MS.gene98544.t1 MTR_7g094360 40.526 190 58 6 1 136 1 189 3.00e-31 112
MS.gene98544.t1 MTR_1g099870 64.198 81 27 1 57 135 2 82 2.96e-29 104
MS.gene98544.t1 MTR_7g094350 38.298 188 61 6 2 136 3 188 1.72e-28 105
MS.gene98544.t1 MTR_8g089730 54.369 103 29 2 33 135 1 85 2.32e-28 102
MS.gene98544.t1 MTR_4g032420 51.887 106 37 2 30 135 38 129 4.32e-27 100
MS.gene98544.t1 MTR_4g127240 54.167 96 38 3 42 135 28 119 9.95e-26 96.3
MS.gene98544.t1 MTR_4g119422 48.485 132 62 2 3 133 229 355 1.90e-25 100
MS.gene98544.t1 MTR_7g094320 43.704 135 34 4 2 135 3 96 6.46e-22 85.9
MS.gene98544.t1 MTR_8g056090 41.481 135 46 5 2 135 3 105 9.24e-20 80.9
MS.gene98544.t1 MTR_4g032470 42.063 126 28 3 11 135 32 113 1.14e-19 80.9
MS.gene98544.t1 MTR_4g032520 42.056 107 38 1 29 135 2 84 1.12e-15 70.5
MS.gene98544.t1 MTR_2g066010 34.615 130 75 3 7 135 20 140 4.27e-15 70.1
MS.gene98544.t1 MTR_5g078680 35.294 136 65 5 9 128 3 131 9.48e-15 70.5
MS.gene98544.t1 MTR_1g112590 31.429 140 81 2 9 133 3 142 1.69e-14 67.8
MS.gene98544.t1 MTR_1g112570 34.400 125 61 3 9 117 3 122 9.96e-14 67.8
MS.gene98544.t1 MTR_2g065720 32.812 128 76 3 7 133 37 155 1.16e-13 66.6
MS.gene98544.t1 MTR_1g042510 34.559 136 68 5 9 128 3 133 1.38e-13 67.4
MS.gene98544.t1 MTR_4g131910 34.959 123 61 3 4 118 133 244 1.13e-12 64.7
MS.gene98544.t1 MTR_7g036780 28.467 137 87 3 2 133 4 134 4.61e-12 62.8
MS.gene98544.t1 MTR_7g071200 60.417 48 18 1 89 135 4 51 6.96e-11 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98544.t1 AT5G42190 62.179 156 32 3 1 135 1 150 6.18e-58 179
MS.gene98544.t1 AT1G75950 61.871 139 46 2 3 135 2 139 8.42e-57 176
MS.gene98544.t1 AT1G20140 60.839 143 47 4 1 135 1 142 7.62e-52 164
MS.gene98544.t1 AT2G25700 57.343 143 52 4 1 135 1 142 1.15e-49 158
MS.gene98544.t1 AT4G34210 55.639 133 56 3 3 135 2 131 6.29e-45 145
MS.gene98544.t1 AT4G34470 54.478 134 56 3 3 135 2 131 4.67e-44 143
MS.gene98544.t1 AT3G21860 54.412 136 53 4 3 135 2 131 1.69e-40 134
MS.gene98544.t1 AT3G21850 52.985 134 59 4 3 135 2 132 6.78e-40 133
MS.gene98544.t1 AT3G60010 53.125 128 56 3 4 129 2 127 2.36e-39 132
MS.gene98544.t1 AT2G03170 50.000 134 59 3 3 135 2 128 2.13e-36 124
MS.gene98544.t1 AT2G03190 47.260 146 63 4 3 135 2 146 1.94e-35 122
MS.gene98544.t1 AT3G25650 48.276 145 62 4 3 135 2 145 2.93e-35 122
MS.gene98544.t1 AT3G60020 48.529 136 57 5 6 135 4 132 5.13e-31 110
MS.gene98544.t1 AT3G21840 52.066 121 49 4 3 120 2 116 4.67e-30 107
MS.gene98544.t1 AT2G03160 37.870 169 68 3 3 135 2 169 4.76e-29 107
MS.gene98544.t1 AT3G21830 45.113 133 70 3 3 135 2 131 1.94e-28 103
MS.gene98544.t1 AT1G10230 43.382 136 73 3 3 135 2 136 3.19e-28 103
MS.gene98544.t1 AT2G20160 44.030 134 68 3 3 135 2 129 3.04e-27 100
MS.gene98544.t1 AT3G53060 60.000 85 26 4 30 113 3 80 7.70e-24 90.1

Find 36 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCACCGTCGGAACTCTTC+AGG 0.319584 5.2:+72469905 None:intergenic
ACACACCCACCACCAGTATA+AGG 0.376367 5.2:+72468107 None:intergenic
AACTCTTGAAGGATGATCTC+AGG 0.390868 5.2:-72469711 MS.gene98544:CDS
TTTGAACATCAAGAGCTTGT+TGG 0.392832 5.2:-72469620 MS.gene98544:CDS
AAATGTAACTAGCAACATCT+TGG 0.428776 5.2:-72469788 MS.gene98544:CDS
TGAAGGATGATCTCAGGGCT+TGG 0.434884 5.2:-72469705 MS.gene98544:CDS
GAGGAAGACCATGGGAAGAT+TGG 0.437673 5.2:+72468180 None:intergenic
CACTGCTTCGTTGATTTCAA+AGG 0.456467 5.2:+72469882 None:intergenic
GAAGGATGATCTCAGGGCTT+GGG 0.460462 5.2:-72469704 MS.gene98544:CDS
GGTTTCTCAACAGTGGTGGT+TGG 0.470288 5.2:-72468244 MS.gene98544:intron
GATGATTGTGTCGACTATAG+TGG 0.481059 5.2:-72469823 MS.gene98544:CDS
CACCACCAGTATAAGGAAAA+CGG 0.502215 5.2:+72468114 None:intergenic
TTGCTAGTTACATTTGAAAG+AGG 0.505751 5.2:+72469796 None:intergenic
CACACTCCTCGATCTGATCT+CGG 0.515843 5.2:-72469653 MS.gene98544:CDS
TCCATCAAAAGCAGCACCAT+TGG 0.517813 5.2:+72468210 None:intergenic
GTTGGAGCTGCCGTCACCAA+TGG 0.529714 5.2:-72468226 MS.gene98544:CDS
CTACGAGCCGTGACTGGTCG+AGG 0.537661 5.2:+72468161 None:intergenic
CAACGACTACGAGCCGTGAC+TGG 0.541665 5.2:+72468155 None:intergenic
TGCTAGTTACATTTGAAAGA+GGG 0.544571 5.2:+72469797 None:intergenic
ACTCTTGAAGGATGATCTCA+GGG 0.557035 5.2:-72469710 MS.gene98544:CDS
ATCTATATCCAATCTTCCCA+TGG 0.576222 5.2:-72468188 MS.gene98544:CDS
TTGGGAAAGTGAATTTGTCA+AGG 0.584194 5.2:-72469686 MS.gene98544:CDS
GACTGGTCGAGGAAGACCAT+GGG 0.586359 5.2:+72468172 None:intergenic
AACTAGCAACATCTTGGCAA+AGG 0.590317 5.2:-72469782 MS.gene98544:CDS
TGGTCTTCCTCGACCAGTCA+CGG 0.601107 5.2:-72468168 MS.gene98544:CDS
AAAAGCAGCACCATTGGTGA+CGG 0.602859 5.2:+72468216 None:intergenic
ATCATCCTGAAGAGTTCCGA+CGG 0.611985 5.2:-72469910 MS.gene98544:CDS
GTTGGATCTTACATGTAAGA+CGG 0.616080 5.2:-72469602 MS.gene98544:CDS
GATCTTACATGTAAGACGGT+AGG 0.624985 5.2:-72469598 MS.gene98544:CDS
CTTTGAAATCAACGAAGCAG+TGG 0.631226 5.2:-72469881 MS.gene98544:CDS
GATTTCAAAGGTCTCACCGT+CGG 0.642648 5.2:+72469894 None:intergenic
GATGAAGAAAACGACATCGG+AGG 0.664996 5.2:-72469569 MS.gene98544:CDS
GATGATGAAGAAAACGACAT+CGG 0.673514 5.2:-72469572 MS.gene98544:CDS
TGACTGGTCGAGGAAGACCA+TGG 0.684469 5.2:+72468171 None:intergenic
TTGCAGCCGAGATCAGATCG+AGG 0.720374 5.2:+72469647 None:intergenic
ACAAAATCATGTCATCGACG+AGG 0.737887 5.2:-72469936 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTCTATTTGAAAATCAAT+AGG + chr5.2:72468856-72468875 None:intergenic 15.0%
!! ATAACGATTGTAAAATAAAT+CGG - chr5.2:72468569-72468588 MS.gene98544:intron 15.0%
!! ATTAAGTTAGATATGATAAT+AGG - chr5.2:72469169-72469188 MS.gene98544:intron 15.0%
!! ATTCTATTTGAAAATCAATA+GGG + chr5.2:72468855-72468874 None:intergenic 15.0%
!! TAAGTAAAAGAATGAAAATA+GGG + chr5.2:72468809-72468828 None:intergenic 15.0%
!!! ACAATATTATCTCTATTTTA+AGG + chr5.2:72469571-72469590 None:intergenic 15.0%
!!! TTGATTTTCAAATAGAATTA+TGG - chr5.2:72468857-72468876 MS.gene98544:intron 15.0%
!! AAAATCAATAGGGTTAAATT+AGG + chr5.2:72468845-72468864 None:intergenic 20.0%
!! AAAGAATTTCATCATCAATA+AGG + chr5.2:72469198-72469217 None:intergenic 20.0%
!! AAATCAATAGGGTTAAATTA+GGG + chr5.2:72468844-72468863 None:intergenic 20.0%
!! CCATAATTAACTAAAATCTT+AGG - chr5.2:72469014-72469033 MS.gene98544:intron 20.0%
!! CTAAGTAAAAGAATGAAAAT+AGG + chr5.2:72468810-72468829 None:intergenic 20.0%
!! TAAAAGGAATAGATATGATT+TGG - chr5.2:72469285-72469304 MS.gene98544:intron 20.0%
!! TTTATAGATATTATCAACGA+AGG - chr5.2:72468945-72468964 MS.gene98544:intron 20.0%
!!! AATATTGTTTTCCATGATTT+GGG - chr5.2:72469583-72469602 MS.gene98544:CDS 20.0%
!!! CCTAAGATTTTAGTTAATTA+TGG + chr5.2:72469017-72469036 None:intergenic 20.0%
!!! CTATTTTCATTCTTTTACTT+AGG - chr5.2:72468808-72468827 MS.gene98544:intron 20.0%
!!! GTATATATTTTTGAGGTAAA+AGG - chr5.2:72469269-72469288 MS.gene98544:intron 20.0%
!!! TAATATTGTTTTCCATGATT+TGG - chr5.2:72469582-72469601 MS.gene98544:CDS 20.0%
! AACACCTATATTTATGAACA+AGG + chr5.2:72469623-72469642 None:intergenic 25.0%
! AATCAATAGGGTTAAATTAG+GGG + chr5.2:72468843-72468862 None:intergenic 25.0%
! AGGTGAAATTTGTCAAAATT+TGG - chr5.2:72469540-72469559 MS.gene98544:intron 25.0%
! CATATCTAACTTAATTGACA+AGG + chr5.2:72469164-72469183 None:intergenic 25.0%
! GGTGAAATTTGTCAAAATTT+GGG - chr5.2:72469541-72469560 MS.gene98544:intron 25.0%
! GTTATGAAAATATGCAATGA+GGG + chr5.2:72469355-72469374 None:intergenic 25.0%
! TGTTATGAAAATATGCAATG+AGG + chr5.2:72469356-72469375 None:intergenic 25.0%
! TTTCAAATAGAATTATGGTG+TGG - chr5.2:72468862-72468881 MS.gene98544:intron 25.0%
!! AAGAATGAAAATAGGGATTT+TGG + chr5.2:72468802-72468821 None:intergenic 25.0%
!! ATATTGTTTTCCATGATTTG+GGG - chr5.2:72469584-72469603 MS.gene98544:CDS 25.0%
!! GAGAATAAACTAAGACTTTT+TGG - chr5.2:72469107-72469126 MS.gene98544:intron 25.0%
!!! CTTAGGTGTATATATTTTTG+AGG - chr5.2:72469262-72469281 MS.gene98544:intron 25.0%
!!! GACTTTTTGGAATGTAAAAA+TGG - chr5.2:72469120-72469139 MS.gene98544:intron 25.0%
AAACCAAAGAAACACATTGA+GGG + chr5.2:72469774-72469793 None:intergenic 30.0%
AAATGTAACTAGCAACATCT+TGG - chr5.2:72468245-72468264 MS.gene98544:intron 30.0%
ATATCTAGCATCCTAATAGT+TGG - chr5.2:72468600-72468619 MS.gene98544:intron 30.0%
ATGTTCATTGGGAAAATCAA+TGG - chr5.2:72468541-72468560 MS.gene98544:intron 30.0%
CAAGTACAAGATGTATTTGA+TGG + chr5.2:72468640-72468659 None:intergenic 30.0%
CTTCAGTTTCATTTATCAGA+AGG + chr5.2:72469043-72469062 None:intergenic 30.0%
CTTCTGATAAATGAAACTGA+AGG - chr5.2:72469041-72469060 MS.gene98544:intron 30.0%
TCTCCTAAGTATGCAAATAA+AGG + chr5.2:72469435-72469454 None:intergenic 30.0%
TGATAAATGAAACTGAAGGT+AGG - chr5.2:72469045-72469064 MS.gene98544:intron 30.0%
TGCTAATGATTATAGTCCTA+AGG - chr5.2:72468509-72468528 MS.gene98544:intron 30.0%
TGCTAGTTACATTTGAAAGA+GGG + chr5.2:72468239-72468258 None:intergenic 30.0%
TGCTCCTTGTTCATAAATAT+AGG - chr5.2:72469616-72469635 MS.gene98544:CDS 30.0%
TGTTCATTGGGAAAATCAAT+GGG - chr5.2:72468542-72468561 MS.gene98544:intron 30.0%
TTGCTAGTTACATTTGAAAG+AGG + chr5.2:72468240-72468259 None:intergenic 30.0%
TTTAGTTAATTATGGCGTCT+AGG + chr5.2:72469009-72469028 None:intergenic 30.0%
! AACGATCAAACTTTTAATCG+AGG - chr5.2:72468188-72468207 MS.gene98544:CDS 30.0%
! AAGCCTTTATTTGCATACTT+AGG - chr5.2:72469429-72469448 MS.gene98544:intron 30.0%
! AGTAGTTTTTCTAAGTCTTG+AGG - chr5.2:72468747-72468766 MS.gene98544:intron 30.0%
! ATCCTTCAAGAGTTTTTCAT+CGG + chr5.2:72468316-72468335 None:intergenic 30.0%
! GTAAAAAGCATGTTGAAGTT+GGG - chr5.2:72468286-72468305 MS.gene98544:intron 30.0%
! TGTAAAAAGCATGTTGAAGT+TGG - chr5.2:72468285-72468304 MS.gene98544:intron 30.0%
!! ATAGAGAGTATCTCATACTT+AGG - chr5.2:72469245-72469264 MS.gene98544:intron 30.0%
!!! TGAACTTTGCTTTTTGTCAT+CGG - chr5.2:72469706-72469725 MS.gene98544:CDS 30.0%
AATAAAGAACTGATCCCACA+GGG + chr5.2:72469486-72469505 None:intergenic 35.0%
AGGAAGAAGATGATGTTCAT+TGG - chr5.2:72468529-72468548 MS.gene98544:intron 35.0%
ATCTATATCCAATCTTCCCA+TGG - chr5.2:72469845-72469864 MS.gene98544:CDS 35.0%
GAAACCAAAGAAACACATTG+AGG + chr5.2:72469775-72469794 None:intergenic 35.0%
GATGATGAAGAAAACGACAT+CGG - chr5.2:72468461-72468480 MS.gene98544:intron 35.0%
GGAAGAAGATGATGTTCATT+GGG - chr5.2:72468530-72468549 MS.gene98544:intron 35.0%
GGGATCAGTTCTTTATTACA+AGG - chr5.2:72469489-72469508 MS.gene98544:intron 35.0%
GTTGGATCTTACATGTAAGA+CGG - chr5.2:72468431-72468450 MS.gene98544:intron 35.0%
TAATAAAGAACTGATCCCAC+AGG + chr5.2:72469487-72469506 None:intergenic 35.0%
TAGCATCCTAATAGTTGGTT+TGG - chr5.2:72468605-72468624 MS.gene98544:intron 35.0%
TCAAAGACAATAACCCATGT+TGG + chr5.2:72469746-72469765 None:intergenic 35.0%
TGAACATCATCTTCTTCCTT+AGG + chr5.2:72468528-72468547 None:intergenic 35.0%
TGCTTAAACCAAATCTAACG+TGG + chr5.2:72468906-72468925 None:intergenic 35.0%
TTCCGATGAAAAACTCTTGA+AGG - chr5.2:72468311-72468330 MS.gene98544:intron 35.0%
TTGGGAAAGTGAATTTGTCA+AGG - chr5.2:72468347-72468366 MS.gene98544:intron 35.0%
TTTGAACATCAAGAGCTTGT+TGG - chr5.2:72468413-72468432 MS.gene98544:intron 35.0%
! AGTTTCCGTTTTCCTTATAC+TGG - chr5.2:72469914-72469933 MS.gene98544:CDS 35.0%
! GATTTGGTTTAAGCACAACA+AGG - chr5.2:72468911-72468930 MS.gene98544:intron 35.0%
! TACAAGATGTATTTGATGGC+AGG + chr5.2:72468636-72468655 None:intergenic 35.0%
! TTTCTTTGGTTTCTCAACAG+TGG - chr5.2:72469782-72469801 MS.gene98544:CDS 35.0%
! TTTTCTAAGTCTTGAGGTCA+TGG - chr5.2:72468753-72468772 MS.gene98544:intron 35.0%
!! CATGTACTGGTTTGATTCTT+GGG - chr5.2:72469647-72469666 MS.gene98544:CDS 35.0%
!! GGTAGGTTGATGGAAATATA+AGG - chr5.2:72469062-72469081 MS.gene98544:intron 35.0%
!! TCATGTACTGGTTTGATTCT+TGG - chr5.2:72469646-72469665 MS.gene98544:CDS 35.0%
!! TCGTTTGTTGTTTCCAACAT+GGG - chr5.2:72469730-72469749 MS.gene98544:CDS 35.0%
!! TTCGTTTGTTGTTTCCAACA+TGG - chr5.2:72469729-72469748 MS.gene98544:CDS 35.0%
AACTAGCAACATCTTGGCAA+AGG - chr5.2:72468251-72468270 MS.gene98544:intron 40.0%
AACTCTTGAAGGATGATCTC+AGG - chr5.2:72468322-72468341 MS.gene98544:intron 40.0%
ACTCTTGAAGGATGATCTCA+GGG - chr5.2:72468323-72468342 MS.gene98544:intron 40.0%
ATCAACGAAGGAACGATAGT+TGG - chr5.2:72468957-72468976 MS.gene98544:intron 40.0%
ATGGTGTGGTTGTTAGAACT+TGG - chr5.2:72468876-72468895 MS.gene98544:intron 40.0%
CACCACCAGTATAAGGAAAA+CGG + chr5.2:72469922-72469941 None:intergenic 40.0%
GATCTTACATGTAAGACGGT+AGG - chr5.2:72468435-72468454 MS.gene98544:intron 40.0%
GTGCACTTGCATGATATCAA+AGG - chr5.2:72469520-72469539 MS.gene98544:intron 40.0%
GTGTTGCCAAACCAACTATT+AGG + chr5.2:72468614-72468633 None:intergenic 40.0%
TCTCCCTCAATGTGTTTCTT+TGG - chr5.2:72469768-72469787 MS.gene98544:CDS 40.0%
TTAGATTCACAAGACCCTGT+GGG - chr5.2:72469469-72469488 MS.gene98544:intron 40.0%
TTTAGATTCACAAGACCCTG+TGG - chr5.2:72469468-72469487 MS.gene98544:intron 40.0%
! ACAGGGTCTTGTGAATCTAA+AGG + chr5.2:72469469-72469488 None:intergenic 40.0%
! ATAGGTGTTGCATCATGTAC+TGG - chr5.2:72469634-72469653 MS.gene98544:CDS 40.0%
! GGAAAGTGCGTCATAATCAT+TGG + chr5.2:72469334-72469353 None:intergenic 40.0%
! GTTTTCCTTATACTGGTGGT+GGG - chr5.2:72469921-72469940 MS.gene98544:CDS 40.0%
! TGAAACTGAAGGTAGGTTGA+TGG - chr5.2:72469052-72469071 MS.gene98544:intron 40.0%
! TTCCGTTTTCCTTATACTGG+TGG - chr5.2:72469917-72469936 MS.gene98544:CDS 40.0%
!! CACTGCTTCGTTGATTTCAA+AGG + chr5.2:72468154-72468173 None:intergenic 40.0%
!! CTTTGAAATCAACGAAGCAG+TGG - chr5.2:72468152-72468171 MS.gene98544:CDS 40.0%
!! GATGATTGTGTCGACTATAG+TGG - chr5.2:72468210-72468229 MS.gene98544:CDS 40.0%
AAAAGCAGCACCATTGGTGA+CGG + chr5.2:72469820-72469839 None:intergenic 45.0%
ATCATCCTGAAGAGTTCCGA+CGG - chr5.2:72468123-72468142 MS.gene98544:CDS 45.0%
GATGAAGAAAACGACATCGG+AGG - chr5.2:72468464-72468483 MS.gene98544:intron 45.0%
GATTTCAAAGGTCTCACCGT+CGG + chr5.2:72468142-72468161 None:intergenic 45.0%
TCCATCAAAAGCAGCACCAT+TGG + chr5.2:72469826-72469845 None:intergenic 45.0%
TTGGCTGACCACGTTAGATT+TGG - chr5.2:72468895-72468914 MS.gene98544:intron 45.0%
! CGTTTTCCTTATACTGGTGG+TGG - chr5.2:72469920-72469939 MS.gene98544:CDS 45.0%
! CTGGTTTGATTCTTGGGTGT+TGG - chr5.2:72469653-72469672 MS.gene98544:CDS 45.0%
! CTTTGGTTTCTCAACAGTGG+TGG - chr5.2:72469785-72469804 MS.gene98544:CDS 45.0%
! TTTCCATGATTTGGGGTCTC+TGG - chr5.2:72469591-72469610 MS.gene98544:CDS 45.0%
!!! ACCAATGGTGCTGCTTTTGA+TGG - chr5.2:72469822-72469841 MS.gene98544:CDS 45.0%
AAGCCAGAGACCCCAAATCA+TGG + chr5.2:72469597-72469616 None:intergenic 50.0%
ACACACCCACCACCAGTATA+AGG + chr5.2:72469929-72469948 None:intergenic 50.0%
CACACTCCTCGATCTGATCT+CGG - chr5.2:72468380-72468399 MS.gene98544:intron 50.0%
GAAGGATGATCTCAGGGCTT+GGG - chr5.2:72468329-72468348 MS.gene98544:intron 50.0%
GAGGAAGACCATGGGAAGAT+TGG + chr5.2:72469856-72469875 None:intergenic 50.0%
GGTTTCTCAACAGTGGTGGT+TGG - chr5.2:72469789-72469808 MS.gene98544:CDS 50.0%
TGAAGGATGATCTCAGGGCT+TGG - chr5.2:72468328-72468347 MS.gene98544:intron 50.0%
TCTCACCGTCGGAACTCTTC+AGG + chr5.2:72468131-72468150 None:intergenic 55.0%
TGGTCTTCCTCGACCAGTCA+CGG - chr5.2:72469865-72469884 MS.gene98544:CDS 55.0%
TTGCAGCCGAGATCAGATCG+AGG + chr5.2:72468389-72468408 None:intergenic 55.0%
! GACTGGTCGAGGAAGACCAT+GGG + chr5.2:72469864-72469883 None:intergenic 55.0%
! TGACTGGTCGAGGAAGACCA+TGG + chr5.2:72469865-72469884 None:intergenic 55.0%
CAACGACTACGAGCCGTGAC+TGG + chr5.2:72469881-72469900 None:intergenic 60.0%
GTTGGAGCTGCCGTCACCAA+TGG - chr5.2:72469807-72469826 MS.gene98544:CDS 60.0%
! CTACGAGCCGTGACTGGTCG+AGG + chr5.2:72469875-72469894 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 72468105 72469950 72468105 ID=MS.gene98544
chr5.2 mRNA 72468105 72469950 72468105 ID=MS.gene98544.t1;Parent=MS.gene98544
chr5.2 exon 72469551 72469950 72469551 ID=MS.gene98544.t1.exon1;Parent=MS.gene98544.t1
chr5.2 CDS 72469551 72469950 72469551 ID=cds.MS.gene98544.t1;Parent=MS.gene98544.t1
chr5.2 exon 72468105 72468253 72468105 ID=MS.gene98544.t1.exon2;Parent=MS.gene98544.t1
chr5.2 CDS 72468105 72468253 72468105 ID=cds.MS.gene98544.t1;Parent=MS.gene98544.t1
Gene Sequence

>MS.gene98544

ATGTCATCGACGAGGAAGATCATCCTGAAGAGTTCCGACGGTGAGACCTTTGAAATCAACGAAGCAGTGGCATTAGAATCACAAACGATCAAACTTTTAATCGAGGATGATTGTGTCGACTATAGTGGAATCCCTCTTTCAAATGTAACTAGCAACATCTTGGCAAAGGTTATCGAGTATTGTAAAAAGCATGTTGAAGTTGGGAGTTCCGATGAAAAACTCTTGAAGGATGATCTCAGGGCTTGGGAAAGTGAATTTGTCAAGGTTGATCAAGACACACTCCTCGATCTGATCTCGGCTGCAAACTATTTGAACATCAAGAGCTTGTTGGATCTTACATGTAAGACGGTAGGAGAGATGATGAAGAAAACGACATCGGAGGAGATTCTCAAGACTTTCAGTAGTGCTAATGATTATAGTCCTAAGGAAGAAGATGATGTTCATTGGGAAAATCAATGGGCTTTATAACGATTGTAAAATAAATCGGTCAATTTAATATCTAGCATCCTAATAGTTGGTTTGGCAACACCTGCCATCAAATACATCTTGTACTTGCATTGTTATATCAATATAGTTTTATTTTATTTACTTTTTTTATATTCTCTTTATTTTATTTAGTTAAGTTCATTATTATGACGATTGAGTAGTTTTTCTAAGTCTTGAGGTCATGGAAAGTAGTCTTATGACAAAAATTCCAAAATCCCTATTTTCATTCTTTTACTTAGGAAATCTAATCCCCTAATTTAACCCTATTGATTTTCAAATAGAATTATGGTGTGGTTGTTAGAACTTGGCTGACCACGTTAGATTTGGTTTAAGCACAACAAGGTCTAACAATCATTTATAGATATTATCAACGAAGGAACGATAGTTGGAGTTGATAATTAGAAGATTGAAAGATCCTAGACGCCATAATTAACTAAAATCTTAGGAAGCCTTCTGATAAATGAAACTGAAGGTAGGTTGATGGAAATATAAGGTTAAACAAAATGTTTGAATCATGAGAATAAACTAAGACTTTTTGGAATGTAAAAATGGATATTTAGACTTAACTGTCCTTGTCAATTAAGTTAGATATGATAATAGGTAACCTTATTGATGATGAAATTCTTTATAACTAGAGATAGAGTAAATGAAACAATAGAGAGTATCTCATACTTAGGTGTATATATTTTTGAGGTAAAAGGAATAGATATGATTTGGATCGTTCATTATTACGATAAACTCCAATGATTATGACGCACTTTCCCTCATTGCATATTTTCATAACAAACATCACATTGTTTTCTAATCATCTTGCATCATTTATAAAAATACAAAAAGAAAGCCTTTATTTGCATACTTAGGAGAGAAAAATGCTACCTTTAGATTCACAAGACCCTGTGGGATCAGTTCTTTATTACAAGGATAAAATCGTGCACTTGCATGATATCAAAGGTGAAATTTGTCAAAATTTGGGAACTCCTTAAAATAGAGATAATATTGTTTTCCATGATTTGGGGTCTCTGGCTTGCTCCTTGTTCATAAATATAGGTGTTGCATCATGTACTGGTTTGATTCTTGGGTGTTGGATATGTTTCTGACGACGACGTTGTTCATCGTGAACTTTGCTTTTTGTCATCGGTTCGTTTGTTGTTTCCAACATGGGTTATTGTCTTTGATATCTCCCTCAATGTGTTTCTTTGGTTTCTCAACAGTGGTGGTTGGAGCTGCCGTCACCAATGGTGCTGCTTTTGATGGATCTATATCCAATCTTCCCATGGTCTTCCTCGACCAGTCACGGCTCGTAGTCGTTGTTTCAGTTTTGATAGTTTCCGTTTTCCTTATACTGGTGGTGGGTGTGTGA
Protein sequence

>MS.gene98544.t1

MSSTRKIILKSSDGETFEINEAVALESQTIKLLIEDDCVDYSGIPLSNVTSNILAKVIEYCKKHVEVGSSDEKLLKDDLRAWESEFVKVDQDTLLDLISAANYLNIKSLLDLTCKTVGEMMKKTTSEEILKTFMVVGAAVTNGAAFDGSISNLPMVFLDQSRLVVVVSVLIVSVFLILVVGV