Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98871.t1 | XP_003616760.1 | 95.3 | 535 | 24 | 1 | 1 | 534 | 1 | 535 | 1.30E-273 | 951.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98871.t1 | Q5XVC7 | 41.7 | 530 | 231 | 16 | 21 | 534 | 49 | 516 | 8.4e-75 | 282.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98871.t1 | G7KH30 | 95.3 | 535 | 24 | 1 | 1 | 534 | 1 | 535 | 9.6e-274 | 951.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene98871 | 0.865009 | 8.05E-65 | -1.69E-46 |
| MS.gene049698 | MS.gene98871 | 0.818345 | 2.06E-52 | -1.69E-46 |
| MS.gene051067 | MS.gene98871 | 0.834768 | 2.48E-56 | -1.69E-46 |
| MS.gene051478 | MS.gene98871 | 0.824777 | 6.72E-54 | -1.69E-46 |
| MS.gene053144 | MS.gene98871 | 0.858657 | 7.09E-63 | -1.69E-46 |
| MS.gene053536 | MS.gene98871 | 0.829297 | 5.57E-55 | -1.69E-46 |
| MS.gene053538 | MS.gene98871 | 0.830115 | 3.52E-55 | -1.69E-46 |
| MS.gene054584 | MS.gene98871 | 0.849148 | 3.89E-60 | -1.69E-46 |
| MS.gene055537 | MS.gene98871 | 0.827602 | 1.43E-54 | -1.69E-46 |
| MS.gene055764 | MS.gene98871 | 0.801169 | 1.02E-48 | -1.69E-46 |
| MS.gene056704 | MS.gene98871 | 0.807422 | 5.09E-50 | -1.69E-46 |
| MS.gene057082 | MS.gene98871 | 0.80338 | 3.58E-49 | -1.69E-46 |
| MS.gene058197 | MS.gene98871 | 0.810669 | 1.03E-50 | -1.69E-46 |
| MS.gene058198 | MS.gene98871 | 0.807072 | 6.04E-50 | -1.69E-46 |
| MS.gene05894 | MS.gene98871 | 0.828678 | 7.87E-55 | -1.69E-46 |
| MS.gene059300 | MS.gene98871 | 0.81232 | 4.50E-51 | -1.69E-46 |
| MS.gene059424 | MS.gene98871 | 0.836982 | 6.80E-57 | -1.69E-46 |
| MS.gene06057 | MS.gene98871 | 0.809784 | 1.59E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98871.t1 | MTR_5g083980 | 95.429 | 525 | 24 | 0 | 10 | 534 | 11 | 535 | 0.0 | 991 |
| MS.gene98871.t1 | MTR_3g072350 | 53.356 | 581 | 195 | 11 | 17 | 534 | 12 | 579 | 5.69e-173 | 501 |
| MS.gene98871.t1 | MTR_3g072350 | 52.209 | 498 | 171 | 8 | 17 | 451 | 12 | 505 | 5.68e-141 | 417 |
| MS.gene98871.t1 | MTR_7g072550 | 36.691 | 556 | 278 | 13 | 26 | 530 | 27 | 559 | 2.37e-83 | 270 |
| MS.gene98871.t1 | MTR_4g029090 | 37.732 | 538 | 284 | 11 | 19 | 523 | 18 | 537 | 2.20e-72 | 241 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98871.t1 | AT2G40480 | 42.830 | 530 | 225 | 20 | 21 | 534 | 49 | 516 | 1.31e-92 | 293 |
| MS.gene98871.t1 | AT3G56270 | 37.500 | 456 | 195 | 19 | 23 | 460 | 37 | 420 | 8.22e-47 | 169 |
| MS.gene98871.t1 | AT2G38370 | 31.801 | 522 | 289 | 11 | 30 | 526 | 25 | 504 | 2.40e-42 | 159 |
| MS.gene98871.t1 | AT2G38370 | 31.801 | 522 | 289 | 11 | 30 | 526 | 42 | 521 | 2.62e-42 | 159 |
| MS.gene98871.t1 | AT3G51720 | 37.282 | 287 | 110 | 7 | 29 | 313 | 11 | 229 | 2.12e-19 | 90.9 |
Find 78 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTCAGGTATTTGAAATT+CGG | 0.271157 | 5.2:-71852652 | None:intergenic |
| CTTCTTCTTCTGATGTGATA+TGG | 0.272323 | 5.2:-71853153 | None:intergenic |
| AAAGAAGAAGAGATGGAAAA+TGG | 0.276556 | 5.2:+71850176 | MS.gene98871:CDS |
| TTTGCTGCGTAGAACTTCTT+TGG | 0.279623 | 5.2:-71852766 | None:intergenic |
| AAAGAAGCTGTTACTCGTTT+TGG | 0.282290 | 5.2:+71850257 | MS.gene98871:CDS |
| GGTTGTGAAGGATTACAAAT+TGG | 0.310188 | 5.2:+71852359 | MS.gene98871:CDS |
| CGTTGCTCTAGCTGAAATTA+AGG | 0.314939 | 5.2:+71852536 | MS.gene98871:CDS |
| TCTTCAGGTATTTGAAATTC+GGG | 0.319312 | 5.2:-71852651 | None:intergenic |
| GAAAGTGACTTCTGCATTAG+AGG | 0.326225 | 5.2:+71852611 | MS.gene98871:CDS |
| ACTTGATGTGCTTGAAGAAC+TGG | 0.339651 | 5.2:+71851903 | MS.gene98871:CDS |
| TTCCTAAGGGGAATGATATT+CGG | 0.360853 | 5.2:-71853187 | None:intergenic |
| GTAATCCTTCACAACCTCTT+GGG | 0.371012 | 5.2:-71852352 | None:intergenic |
| TCACATCAGAAGAAGAAGTT+TGG | 0.372747 | 5.2:+71853158 | MS.gene98871:CDS |
| ATCATCATCTTCTTCTCCAT+TGG | 0.380777 | 5.2:-71850134 | None:intergenic |
| TAATTTCTCGAGAATCGTTT+TGG | 0.386491 | 5.2:-71851932 | None:intergenic |
| GATGATGATGGAAGATTCAT+TGG | 0.391517 | 5.2:+71850151 | MS.gene98871:CDS |
| TTTATCATTTCGCTTTCCTA+AGG | 0.403073 | 5.2:-71853201 | None:intergenic |
| GTGCTGCTGAAGAGGCTCTA+AGG | 0.408138 | 5.2:+71852841 | MS.gene98871:CDS |
| ACTCAATCGTGCGAAAATCT+TGG | 0.420277 | 5.2:+71851994 | MS.gene98871:CDS |
| GATGTGATATGGACTGCTTT+TGG | 0.421669 | 5.2:-71853142 | None:intergenic |
| ACATATCGGGAGATGAAGTA+TGG | 0.424431 | 5.2:-71852086 | None:intergenic |
| TTCTTCAAGATAGACTCTTC+AGG | 0.424981 | 5.2:-71852666 | None:intergenic |
| TGTAATCCTTCACAACCTCT+TGG | 0.437044 | 5.2:-71852353 | None:intergenic |
| AACTCGGTTAACAACATATC+GGG | 0.437365 | 5.2:-71852099 | None:intergenic |
| TTGGATGTTGAACAGTTCAA+TGG | 0.441033 | 5.2:+71852378 | MS.gene98871:CDS |
| TAACTCGGTTAACAACATAT+CGG | 0.447638 | 5.2:-71852100 | None:intergenic |
| TGGTTACCTCTTTACAAACT+TGG | 0.449781 | 5.2:+71850293 | MS.gene98871:CDS |
| TAATCCTTCACAACCTCTTG+GGG | 0.451818 | 5.2:-71852351 | None:intergenic |
| TTCAGCTAGAGCAACGGCTT+CGG | 0.452729 | 5.2:-71852529 | None:intergenic |
| GATTCCTGAAAACTATCTAA+AGG | 0.452972 | 5.2:+71852869 | MS.gene98871:CDS |
| GCTGAAATTAAGGCTCTATC+TGG | 0.456717 | 5.2:+71852546 | MS.gene98871:CDS |
| ACCTGAAGTTCCTGTAGAAA+AGG | 0.461835 | 5.2:+71852311 | MS.gene98871:CDS |
| AGAGGAACAAGCAGCAAAGT+TGG | 0.467968 | 5.2:+71851849 | MS.gene98871:CDS |
| GCTTCACCAAGTTTGTAAAG+AGG | 0.476692 | 5.2:-71850299 | None:intergenic |
| ATTCCTGAAAACTATCTAAA+GGG | 0.483531 | 5.2:+71852870 | MS.gene98871:CDS |
| AAAGCAACGTGCTGCTGAAG+AGG | 0.489875 | 5.2:+71852833 | MS.gene98871:CDS |
| TTTGTCGTAATATATTCGTC+AGG | 0.491964 | 5.2:-71853014 | None:intergenic |
| GGTAAAACTATAAACGATCT+CGG | 0.493887 | 5.2:+71852144 | MS.gene98871:CDS |
| GCTTCTTTAACAGACTCAAA+TGG | 0.500848 | 5.2:-71850242 | None:intergenic |
| TTATCATTTCGCTTTCCTAA+GGG | 0.506744 | 5.2:-71853200 | None:intergenic |
| AGATCTACTCAGCAGGAAGC+AGG | 0.509837 | 5.2:+71852989 | MS.gene98871:CDS |
| TTTGAATAAGAAGATGAAGA+AGG | 0.520266 | 5.2:+71852191 | MS.gene98871:CDS |
| CTTCGACATAAAGAAAATAG+AGG | 0.524074 | 5.2:+71851831 | MS.gene98871:CDS |
| GTAAAACTATAAACGATCTC+GGG | 0.525454 | 5.2:+71852145 | MS.gene98871:CDS |
| TGAAGAGTCTATCTTGAAGA+AGG | 0.526219 | 5.2:+71852668 | MS.gene98871:CDS |
| GGAAGAGCACGCTGAAACCA+AGG | 0.526605 | 5.2:+71853043 | MS.gene98871:CDS |
| CTGAAGAGGCTCTAAGGAGA+TGG | 0.529424 | 5.2:+71852847 | MS.gene98871:CDS |
| CAATGAGAGATCTACTCAGC+AGG | 0.529935 | 5.2:+71852982 | MS.gene98871:CDS |
| CATTTGACTCAATGCTACCT+TGG | 0.530071 | 5.2:-71853060 | None:intergenic |
| GGAGAAGAAGATGATGATGA+TGG | 0.532180 | 5.2:+71850139 | MS.gene98871:CDS |
| CTTAATTTCAGCTAGAGCAA+CGG | 0.543227 | 5.2:-71852535 | None:intergenic |
| TCAAATGCTTCGAGCAATGA+GGG | 0.544411 | 5.2:+71853076 | MS.gene98871:CDS |
| ATCCGAATATCATTCCCCTT+AGG | 0.550700 | 5.2:+71853185 | MS.gene98871:CDS |
| GAAACCGAGGATCTTACAGC+TGG | 0.555875 | 5.2:-71852960 | None:intergenic |
| CAACTGAACATGAGAATGAC+GGG | 0.556282 | 5.2:+71853114 | MS.gene98871:CDS |
| CTTGATGTGCTTGAAGAACT+GGG | 0.566278 | 5.2:+71851904 | MS.gene98871:CDS |
| CCGTCATTCTCATGTTCAGT+TGG | 0.568973 | 5.2:-71853113 | None:intergenic |
| ATATATTACGACAAAGGAGA+TGG | 0.573684 | 5.2:+71853022 | MS.gene98871:CDS |
| AAAGATGGAAGAAGCTGCAA+TGG | 0.578367 | 5.2:+71852503 | MS.gene98871:CDS |
| AATCCTTCACAACCTCTTGG+GGG | 0.580359 | 5.2:-71852350 | None:intergenic |
| TCTGCAGAAGTTTCGAAGCA+AGG | 0.583195 | 5.2:+71852417 | MS.gene98871:CDS |
| AAACAAGCTAAGATGAACCT+TGG | 0.584371 | 5.2:+71852123 | MS.gene98871:CDS |
| TTAAGAATGCTGAGATGAGG+TGG | 0.587741 | 5.2:+71852469 | MS.gene98871:CDS |
| TGTTGAACAGTTCAATGGAA+TGG | 0.592209 | 5.2:+71852383 | MS.gene98871:CDS |
| GAAGCCAGCTGTAAGATCCT+CGG | 0.596662 | 5.2:+71852956 | MS.gene98871:CDS |
| TATCATTTCGCTTTCCTAAG+GGG | 0.598187 | 5.2:-71853199 | None:intergenic |
| TCATCGAGTTATGCATAGCT+CGG | 0.600248 | 5.2:-71852893 | None:intergenic |
| AGCTATCTCTGCTCAAAATG+TGG | 0.600750 | 5.2:+71852263 | MS.gene98871:CDS |
| CCAACTGAACATGAGAATGA+CGG | 0.608552 | 5.2:+71853113 | MS.gene98871:CDS |
| ATCCTTCACAACCTCTTGGG+GGG | 0.613577 | 5.2:-71852349 | None:intergenic |
| GTATTAAGAATGCTGAGATG+AGG | 0.617653 | 5.2:+71852466 | MS.gene98871:CDS |
| GTCAAATGCTTCGAGCAATG+AGG | 0.623709 | 5.2:+71853075 | MS.gene98871:CDS |
| TCGGGAGATGAAGTATGGCA+TGG | 0.630134 | 5.2:-71852081 | None:intergenic |
| CTTCAGGTATTTGAAATTCG+GGG | 0.632963 | 5.2:-71852650 | None:intergenic |
| TGACGAATATATTACGACAA+AGG | 0.634084 | 5.2:+71853016 | MS.gene98871:CDS |
| TAGATCTCTCATTGAAACCG+AGG | 0.641066 | 5.2:-71852973 | None:intergenic |
| GAAATTAAGGCTCTATCTGG+TGG | 0.649773 | 5.2:+71852549 | MS.gene98871:CDS |
| AGTTTGTAAAGAGGTAACCA+AGG | 0.706258 | 5.2:-71850290 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATATTTTGACAAAATAAT+AGG | - | chr5.2:71851708-71851727 | None:intergenic | 10.0% |
| !! | AAAACAAATTAATAATTGTG+TGG | + | chr5.2:71850803-71850822 | MS.gene98871:intron | 15.0% |
| !! | AAAGGAAAAAAAGATAAAAA+AGG | + | chr5.2:71850532-71850551 | MS.gene98871:intron | 15.0% |
| !! | ATTTACTGTTATGATAAAAA+AGG | + | chr5.2:71850349-71850368 | MS.gene98871:intron | 15.0% |
| !! | TTATGAACTAACATAATAAA+GGG | + | chr5.2:71851389-71851408 | MS.gene98871:intron | 15.0% |
| !! | TTTATGAACTAACATAATAA+AGG | + | chr5.2:71851388-71851407 | MS.gene98871:intron | 15.0% |
| !!! | ACACAATATTCTAAAAAAAT+TGG | + | chr5.2:71852734-71852753 | MS.gene98871:CDS | 15.0% |
| !!! | TTTTGTCAAAATATAACAAT+CGG | + | chr5.2:71851712-71851731 | MS.gene98871:intron | 15.0% |
| !! | AATAGAAAAACAAACAATTC+AGG | - | chr5.2:71850648-71850667 | None:intergenic | 20.0% |
| !! | ATTCGCTATAACAAAAATAA+CGG | - | chr5.2:71851231-71851250 | None:intergenic | 20.0% |
| !! | TTTGTCAAAATATAACAATC+GGG | + | chr5.2:71851713-71851732 | MS.gene98871:intron | 20.0% |
| !!! | AAACATAAAGCATTGAAAAT+TGG | + | chr5.2:71851510-71851529 | MS.gene98871:intron | 20.0% |
| !!! | ATGCATGTATTTTTTTTTTG+CGG | + | chr5.2:71851091-71851110 | MS.gene98871:intron | 20.0% |
| !!! | CAATATTCTAAAAAAATTGG+AGG | + | chr5.2:71852737-71852756 | MS.gene98871:CDS | 20.0% |
| !!! | GAACAAATAAATTAGTCTAA+CGG | - | chr5.2:71851750-71851769 | None:intergenic | 20.0% |
| !!! | TCTTACAATTTTCTATTACT+TGG | + | chr5.2:71851616-71851635 | MS.gene98871:intron | 20.0% |
| !!! | TTTGTAAATGTTGTTTTTGA+AGG | + | chr5.2:71850676-71850695 | MS.gene98871:intron | 20.0% |
| ! | ATTCACTAAAATTTGCATTG+AGG | - | chr5.2:71850975-71850994 | None:intergenic | 25.0% |
| ! | ATTCCTGAAAACTATCTAAA+GGG | + | chr5.2:71852870-71852889 | MS.gene98871:CDS | 25.0% |
| ! | TTTGAATAAGAAGATGAAGA+AGG | + | chr5.2:71852191-71852210 | MS.gene98871:CDS | 25.0% |
| !! | AAAGTAAAATCCTTTTCTAC+AGG | - | chr5.2:71852324-71852343 | None:intergenic | 25.0% |
| !! | TATTTCAGTTAGCAGATTTT+TGG | - | chr5.2:71851131-71851150 | None:intergenic | 25.0% |
| !! | TGTTTTCAAATTGCACAATA+AGG | - | chr5.2:71851320-71851339 | None:intergenic | 25.0% |
| !! | TTTGCAATATTTTCTCTTGA+CGG | - | chr5.2:71852053-71852072 | None:intergenic | 25.0% |
| !!! | ATGCAAATTTTAGTGAATTG+CGG | + | chr5.2:71850977-71850996 | MS.gene98871:intron | 25.0% |
| !!! | ATTTTAACGGAAGCTTTAAA+CGG | + | chr5.2:71852792-71852811 | MS.gene98871:CDS | 25.0% |
| !!! | ATTTTTGTTATAGCGAATCT+AGG | + | chr5.2:71851233-71851252 | MS.gene98871:intron | 25.0% |
| !!! | CACTTCATCAATTTTGAAAT+TGG | - | chr5.2:71852703-71852722 | None:intergenic | 25.0% |
| !!! | TTTTGTTTGTATAAGCTAGT+CGG | + | chr5.2:71850765-71850784 | MS.gene98871:intron | 25.0% |
| !!! | TTTTTTTTTGCGGAAAATCA+AGG | + | chr5.2:71851101-71851120 | MS.gene98871:intron | 25.0% |
| AAAAAAGAGAAGTGAAAACC+TGG | - | chr5.2:71850494-71850513 | None:intergenic | 30.0% | |
| AAAAAGAGAAGTGAAAACCT+GGG | - | chr5.2:71850493-71850512 | None:intergenic | 30.0% | |
| AAAGAAGAAGAGATGGAAAA+TGG | + | chr5.2:71850176-71850195 | MS.gene98871:CDS | 30.0% | |
| AACATCAGAGTGAATTACAA+AGG | - | chr5.2:71851778-71851797 | None:intergenic | 30.0% | |
| ATATATTACGACAAAGGAGA+TGG | + | chr5.2:71853022-71853041 | MS.gene98871:CDS | 30.0% | |
| ATATGCATTTCCTTATCTTG+CGG | - | chr5.2:71851564-71851583 | None:intergenic | 30.0% | |
| ATTGGAAAAAGAAGAAGAGA+TGG | + | chr5.2:71850169-71850188 | MS.gene98871:CDS | 30.0% | |
| CTTCGACATAAAGAAAATAG+AGG | + | chr5.2:71851831-71851850 | MS.gene98871:CDS | 30.0% | |
| GATTCCTGAAAACTATCTAA+AGG | + | chr5.2:71852869-71852888 | MS.gene98871:CDS | 30.0% | |
| GGTAAAACTATAAACGATCT+CGG | + | chr5.2:71852144-71852163 | MS.gene98871:CDS | 30.0% | |
| GTAAAACTATAAACGATCTC+GGG | + | chr5.2:71852145-71852164 | MS.gene98871:CDS | 30.0% | |
| GTGTTATCAATACTGAATTG+TGG | - | chr5.2:71851068-71851087 | None:intergenic | 30.0% | |
| TAACTCGGTTAACAACATAT+CGG | - | chr5.2:71852103-71852122 | None:intergenic | 30.0% | |
| TCTCACTATGTAGATATTTC+TGG | + | chr5.2:71851359-71851378 | MS.gene98871:intron | 30.0% | |
| TGACGAATATATTACGACAA+AGG | + | chr5.2:71853016-71853035 | MS.gene98871:CDS | 30.0% | |
| TGTAAGATCATAGTCGAATT+TGG | - | chr5.2:71851603-71851622 | None:intergenic | 30.0% | |
| TTATCATTTCGCTTTCCTAA+GGG | - | chr5.2:71853203-71853222 | None:intergenic | 30.0% | |
| TTTATCATTTCGCTTTCCTA+AGG | - | chr5.2:71853204-71853223 | None:intergenic | 30.0% | |
| TTTGTCGTAATATATTCGTC+AGG | - | chr5.2:71853017-71853036 | None:intergenic | 30.0% | |
| ! | AAATGTAAAATCGACTTCAC+TGG | + | chr5.2:71850379-71850398 | MS.gene98871:intron | 30.0% |
| ! | AATGTAAAATCGACTTCACT+GGG | + | chr5.2:71850380-71850399 | MS.gene98871:intron | 30.0% |
| ! | ACGCAGCAAAGAAATTTTAA+CGG | + | chr5.2:71852779-71852798 | MS.gene98871:CDS | 30.0% |
| ! | CTCTTCAGGTATTTGAAATT+CGG | - | chr5.2:71852655-71852674 | None:intergenic | 30.0% |
| ! | TAATTTCTCGAGAATCGTTT+TGG | - | chr5.2:71851935-71851954 | None:intergenic | 30.0% |
| ! | TCTTCAGGTATTTGAAATTC+GGG | - | chr5.2:71852654-71852673 | None:intergenic | 30.0% |
| !! | GATCGTTTATAGTTTTACCA+AGG | - | chr5.2:71852143-71852162 | None:intergenic | 30.0% |
| !!! | CATCTTAGCTTGTTTTAACT+CGG | - | chr5.2:71852118-71852137 | None:intergenic | 30.0% |
| !!! | CTTTGTCATTGCTTCTTTTT+TGG | - | chr5.2:71852289-71852308 | None:intergenic | 30.0% |
| AAACAAGCTAAGATGAACCT+TGG | + | chr5.2:71852123-71852142 | MS.gene98871:CDS | 35.0% | |
| AACTCGGTTAACAACATATC+GGG | - | chr5.2:71852102-71852121 | None:intergenic | 35.0% | |
| ACAAACAATTCAGGACTTCA+TGG | - | chr5.2:71850639-71850658 | None:intergenic | 35.0% | |
| AGTTTGTAAAGAGGTAACCA+AGG | - | chr5.2:71850293-71850312 | None:intergenic | 35.0% | |
| ATAGATTTACGAGCAGATAG+AGG | + | chr5.2:71851155-71851174 | MS.gene98871:intron | 35.0% | |
| CTTAATTTCAGCTAGAGCAA+CGG | - | chr5.2:71852538-71852557 | None:intergenic | 35.0% | |
| CTTCTTCTTCTGATGTGATA+TGG | - | chr5.2:71853156-71853175 | None:intergenic | 35.0% | |
| GAGATATGATTAGATGTGTG+TGG | - | chr5.2:71851343-71851362 | None:intergenic | 35.0% | |
| GCTTCTTTAACAGACTCAAA+TGG | - | chr5.2:71850245-71850264 | None:intergenic | 35.0% | |
| GGTTGTGAAGGATTACAAAT+TGG | + | chr5.2:71852359-71852378 | MS.gene98871:CDS | 35.0% | |
| GTATTAAGAATGCTGAGATG+AGG | + | chr5.2:71852466-71852485 | MS.gene98871:CDS | 35.0% | |
| GTGAATTGCGGAAAATTAAG+AGG | + | chr5.2:71850989-71851008 | MS.gene98871:intron | 35.0% | |
| TATCATTTCGCTTTCCTAAG+GGG | - | chr5.2:71853202-71853221 | None:intergenic | 35.0% | |
| TCACATCAGAAGAAGAAGTT+TGG | + | chr5.2:71853158-71853177 | MS.gene98871:CDS | 35.0% | |
| TGAAGAGTCTATCTTGAAGA+AGG | + | chr5.2:71852668-71852687 | MS.gene98871:CDS | 35.0% | |
| TGGTTACCTCTTTACAAACT+TGG | + | chr5.2:71850293-71850312 | MS.gene98871:CDS | 35.0% | |
| TGTTGAACAGTTCAATGGAA+TGG | + | chr5.2:71852383-71852402 | MS.gene98871:CDS | 35.0% | |
| TTCCTAAGGGGAATGATATT+CGG | - | chr5.2:71853190-71853209 | None:intergenic | 35.0% | |
| TTCTTCAAGATAGACTCTTC+AGG | - | chr5.2:71852669-71852688 | None:intergenic | 35.0% | |
| TTGGATGTTGAACAGTTCAA+TGG | + | chr5.2:71852378-71852397 | MS.gene98871:CDS | 35.0% | |
| ! | AAAGAAGCTGTTACTCGTTT+TGG | + | chr5.2:71850257-71850276 | MS.gene98871:CDS | 35.0% |
| ! | ATGTAAAATCGACTTCACTG+GGG | + | chr5.2:71850381-71850400 | MS.gene98871:intron | 35.0% |
| ! | CTTCAGGTATTTGAAATTCG+GGG | - | chr5.2:71852653-71852672 | None:intergenic | 35.0% |
| !! | ATAATAGGCACTGATAAGAC+AGG | - | chr5.2:71851693-71851712 | None:intergenic | 35.0% |
| !! | GATGATGATGGAAGATTCAT+TGG | + | chr5.2:71850151-71850170 | MS.gene98871:CDS | 35.0% |
| AAAGATGGAAGAAGCTGCAA+TGG | + | chr5.2:71852503-71852522 | MS.gene98871:CDS | 40.0% | |
| ACATATCGGGAGATGAAGTA+TGG | - | chr5.2:71852089-71852108 | None:intergenic | 40.0% | |
| ACCTGAAGTTCCTGTAGAAA+AGG | + | chr5.2:71852311-71852330 | MS.gene98871:CDS | 40.0% | |
| ACTCAATCGTGCGAAAATCT+TGG | + | chr5.2:71851994-71852013 | MS.gene98871:CDS | 40.0% | |
| ACTTGATGTGCTTGAAGAAC+TGG | + | chr5.2:71851903-71851922 | MS.gene98871:CDS | 40.0% | |
| AGCTATCTCTGCTCAAAATG+TGG | + | chr5.2:71852263-71852282 | MS.gene98871:CDS | 40.0% | |
| ATCCGAATATCATTCCCCTT+AGG | + | chr5.2:71853185-71853204 | MS.gene98871:CDS | 40.0% | |
| CAACTGAACATGAGAATGAC+GGG | + | chr5.2:71853114-71853133 | MS.gene98871:CDS | 40.0% | |
| CATTTGACTCAATGCTACCT+TGG | - | chr5.2:71853063-71853082 | None:intergenic | 40.0% | |
| CCAACTGAACATGAGAATGA+CGG | + | chr5.2:71853113-71853132 | MS.gene98871:CDS | 40.0% | |
| CGTTGCTCTAGCTGAAATTA+AGG | + | chr5.2:71852536-71852555 | MS.gene98871:CDS | 40.0% | |
| CTTGATGTGCTTGAAGAACT+GGG | + | chr5.2:71851904-71851923 | MS.gene98871:CDS | 40.0% | |
| GAAAGTGACTTCTGCATTAG+AGG | + | chr5.2:71852611-71852630 | MS.gene98871:CDS | 40.0% | |
| GAAATTAAGGCTCTATCTGG+TGG | + | chr5.2:71852549-71852568 | MS.gene98871:CDS | 40.0% | |
| GAATTGTGGAAAACCCATCT+GGG | - | chr5.2:71851054-71851073 | None:intergenic | 40.0% | |
| GCTGAAATTAAGGCTCTATC+TGG | + | chr5.2:71852546-71852565 | MS.gene98871:CDS | 40.0% | |
| GCTTCACCAAGTTTGTAAAG+AGG | - | chr5.2:71850302-71850321 | None:intergenic | 40.0% | |
| GTAATCCTTCACAACCTCTT+GGG | - | chr5.2:71852355-71852374 | None:intergenic | 40.0% | |
| TAATCCTTCACAACCTCTTG+GGG | - | chr5.2:71852354-71852373 | None:intergenic | 40.0% | |
| TAGATCTCTCATTGAAACCG+AGG | - | chr5.2:71852976-71852995 | None:intergenic | 40.0% | |
| TATCAACAGTGAGTGAACTG+CGG | + | chr5.2:71850870-71850889 | MS.gene98871:intron | 40.0% | |
| TCAAATGCTTCGAGCAATGA+GGG | + | chr5.2:71853076-71853095 | MS.gene98871:CDS | 40.0% | |
| TCAGCTAGTAGCAACATGAA+TGG | + | chr5.2:71851202-71851221 | MS.gene98871:intron | 40.0% | |
| TCATCGAGTTATGCATAGCT+CGG | - | chr5.2:71852896-71852915 | None:intergenic | 40.0% | |
| TGAATTGTGGAAAACCCATC+TGG | - | chr5.2:71851055-71851074 | None:intergenic | 40.0% | |
| TGTAATCCTTCACAACCTCT+TGG | - | chr5.2:71852356-71852375 | None:intergenic | 40.0% | |
| TTAAGAATGCTGAGATGAGG+TGG | + | chr5.2:71852469-71852488 | MS.gene98871:CDS | 40.0% | |
| TTTGCTGCGTAGAACTTCTT+TGG | - | chr5.2:71852769-71852788 | None:intergenic | 40.0% | |
| ! | GCAATATTTTCTCTTGACGG+TGG | - | chr5.2:71852050-71852069 | None:intergenic | 40.0% |
| ! | GGAGAAGAAGATGATGATGA+TGG | + | chr5.2:71850139-71850158 | MS.gene98871:CDS | 40.0% |
| ! | GTGGTTTGCAGCTAAAAAGA+TGG | + | chr5.2:71852488-71852507 | MS.gene98871:CDS | 40.0% |
| ! | TCCTTTTCTACAGGAACTTC+AGG | - | chr5.2:71852315-71852334 | None:intergenic | 40.0% |
| ! | TTTGAAGTGTGCTCTTCTCA+AGG | + | chr5.2:71850933-71850952 | MS.gene98871:intron | 40.0% |
| ! | TTTTCTACAGGAACTTCAGG+TGG | - | chr5.2:71852312-71852331 | None:intergenic | 40.0% |
| !! | GATGTGATATGGACTGCTTT+TGG | - | chr5.2:71853145-71853164 | None:intergenic | 40.0% |
| AATCCTTCACAACCTCTTGG+GGG | - | chr5.2:71852353-71852372 | None:intergenic | 45.0% | |
| ACTTCATGGCCCAATGGATA+AGG | - | chr5.2:71850625-71850644 | None:intergenic | 45.0% | |
| AGAGGAACAAGCAGCAAAGT+TGG | + | chr5.2:71851849-71851868 | MS.gene98871:CDS | 45.0% | |
| CAATGAGAGATCTACTCAGC+AGG | + | chr5.2:71852982-71853001 | MS.gene98871:CDS | 45.0% | |
| CCGTCATTCTCATGTTCAGT+TGG | - | chr5.2:71853116-71853135 | None:intergenic | 45.0% | |
| GAACACAAAGCCGCAAGATA+AGG | + | chr5.2:71851551-71851570 | MS.gene98871:intron | 45.0% | |
| GCAGATAGAGGAAGAGACAT+AGG | + | chr5.2:71851167-71851186 | MS.gene98871:intron | 45.0% | |
| GCTAGTAGCAACATGAATGG+TGG | + | chr5.2:71851205-71851224 | MS.gene98871:intron | 45.0% | |
| GTCAAATGCTTCGAGCAATG+AGG | + | chr5.2:71853075-71853094 | MS.gene98871:CDS | 45.0% | |
| TCTACGGAACCAGAGATTCT+GGG | - | chr5.2:71850596-71850615 | None:intergenic | 45.0% | |
| TCTGCAGAAGTTTCGAAGCA+AGG | + | chr5.2:71852417-71852436 | MS.gene98871:CDS | 45.0% | |
| TGCGGAAAACTCACTTCGAT+TGG | + | chr5.2:71850888-71850907 | MS.gene98871:intron | 45.0% | |
| TGTGCTCTTCTCAAGGTCTT+TGG | + | chr5.2:71850940-71850959 | MS.gene98871:intron | 45.0% | |
| ! | CGGCCCTTTAGATAGTTTTC+AGG | - | chr5.2:71852876-71852895 | None:intergenic | 45.0% |
| ! | GAAGCTGTTACTCGTTTTGG+TGG | + | chr5.2:71850260-71850279 | MS.gene98871:CDS | 45.0% |
| !! | AAAACCCATCTGGGTTGGTA+TGG | - | chr5.2:71851045-71851064 | None:intergenic | 45.0% |
| !! | ACTCACTTCGATTGGTCTGA+TGG | + | chr5.2:71850896-71850915 | MS.gene98871:intron | 45.0% |
| !! | ACTTTTTCTCGAGAGGACAC+GGG | + | chr5.2:71852218-71852237 | MS.gene98871:CDS | 45.0% |
| !! | AGGAGAGACTTTTTCTCGAG+AGG | + | chr5.2:71852211-71852230 | MS.gene98871:CDS | 45.0% |
| !! | GACTTTTTCTCGAGAGGACA+CGG | + | chr5.2:71852217-71852236 | MS.gene98871:CDS | 45.0% |
| !! | GTTACTCGTTTTGGTGGAAG+TGG | + | chr5.2:71850266-71850285 | MS.gene98871:CDS | 45.0% |
| !! | TGGTCTGATGGTGTTGACTT+CGG | + | chr5.2:71850908-71850927 | MS.gene98871:intron | 45.0% |
| AGACCAGCGCCTTATCCATT+GGG | + | chr5.2:71850613-71850632 | MS.gene98871:intron | 50.0% | |
| AGATCTACTCAGCAGGAAGC+AGG | + | chr5.2:71852989-71853008 | MS.gene98871:CDS | 50.0% | |
| ATCCTTCACAACCTCTTGGG+GGG | - | chr5.2:71852352-71852371 | None:intergenic | 50.0% | |
| GAAACCGAGGATCTTACAGC+TGG | - | chr5.2:71852963-71852982 | None:intergenic | 50.0% | |
| GAAGCCAGCTGTAAGATCCT+CGG | + | chr5.2:71852956-71852975 | MS.gene98871:CDS | 50.0% | |
| GTCTACGGAACCAGAGATTC+TGG | - | chr5.2:71850597-71850616 | None:intergenic | 50.0% | |
| TAGACCAGCGCCTTATCCAT+TGG | + | chr5.2:71850612-71850631 | MS.gene98871:intron | 50.0% | |
| TCGGGAGATGAAGTATGGCA+TGG | - | chr5.2:71852084-71852103 | None:intergenic | 50.0% | |
| TGTGGAAAACCCATCTGGGT+TGG | - | chr5.2:71851050-71851069 | None:intergenic | 50.0% | |
| TTCAGCTAGAGCAACGGCTT+CGG | - | chr5.2:71852532-71852551 | None:intergenic | 50.0% | |
| TTCAGGACTTCATGGCCCAA+TGG | - | chr5.2:71850631-71850650 | None:intergenic | 50.0% | |
| ! | AAAGCAACGTGCTGCTGAAG+AGG | + | chr5.2:71852833-71852852 | MS.gene98871:CDS | 50.0% |
| !! | ATGGATAAGGCGCTGGTCTA+CGG | - | chr5.2:71850612-71850631 | None:intergenic | 50.0% |
| !! | CTGAAGAGGCTCTAAGGAGA+TGG | + | chr5.2:71852847-71852866 | MS.gene98871:CDS | 50.0% |
| !! | GTTTTGGTGGAAGTGGTCCT+TGG | + | chr5.2:71850273-71850292 | MS.gene98871:CDS | 50.0% |
| !! | TGGTATGGTGGCGTTGGTTT+CGG | - | chr5.2:71851030-71851049 | None:intergenic | 50.0% |
| GCCACCATACCAACCCAGAT+GGG | + | chr5.2:71851038-71851057 | MS.gene98871:intron | 55.0% | |
| GGGATCGAACCCAGAATCTC+TGG | + | chr5.2:71850584-71850603 | MS.gene98871:intron | 55.0% | |
| TACTTTCGACACCCCCCAAG+AGG | + | chr5.2:71852338-71852357 | MS.gene98871:CDS | 55.0% | |
| ! | GGAAGAGCACGCTGAAACCA+AGG | + | chr5.2:71853043-71853062 | MS.gene98871:CDS | 55.0% |
| ! | GTGCTGCTGAAGAGGCTCTA+AGG | + | chr5.2:71852841-71852860 | MS.gene98871:CDS | 55.0% |
| !! | ACCCATCTGGGTTGGTATGG+TGG | - | chr5.2:71851042-71851061 | None:intergenic | 55.0% |
| !! | GTGGCGTTGGTTTCGGACTT+TGG | - | chr5.2:71851023-71851042 | None:intergenic | 55.0% |
| CACCCCCCAAGAGGTTGTGA+AGG | + | chr5.2:71852347-71852366 | MS.gene98871:CDS | 60.0% | |
| CGCCACCATACCAACCCAGA+TGG | + | chr5.2:71851037-71851056 | MS.gene98871:intron | 60.0% | |
| CTTCACTGGGGATCGAACCC+AGG | + | chr5.2:71850473-71850492 | MS.gene98871:intron | 60.0% | |
| TGGCCCAATGGATAAGGCGC+TGG | - | chr5.2:71850619-71850638 | None:intergenic | 60.0% | |
| !! | CTGGGTTGGTATGGTGGCGT+TGG | - | chr5.2:71851036-71851055 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 71850137 | 71853232 | 71850137 | ID=MS.gene98871 |
| chr5.2 | mRNA | 71850137 | 71853232 | 71850137 | ID=MS.gene98871.t1;Parent=MS.gene98871 |
| chr5.2 | exon | 71850137 | 71850325 | 71850137 | ID=MS.gene98871.t1.exon1;Parent=MS.gene98871.t1 |
| chr5.2 | CDS | 71850137 | 71850325 | 71850137 | ID=cds.MS.gene98871.t1;Parent=MS.gene98871.t1 |
| chr5.2 | exon | 71851817 | 71853232 | 71851817 | ID=MS.gene98871.t1.exon2;Parent=MS.gene98871.t1 |
| chr5.2 | CDS | 71851817 | 71853232 | 71851817 | ID=cds.MS.gene98871.t1;Parent=MS.gene98871.t1 |
| Gene Sequence |
| Protein sequence |
