Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99647.t1 | RHN82068.1 | 94.1 | 239 | 14 | 0 | 1 | 239 | 7 | 245 | 5.00E-119 | 438.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99647.t1 | Q9M651 | 71.2 | 236 | 68 | 0 | 3 | 238 | 5 | 240 | 5.4e-90 | 333.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99647.t1 | G7IE29 | 94.1 | 239 | 14 | 0 | 1 | 239 | 1 | 239 | 3.6e-119 | 438.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene73093 | MS.gene99647 | PPI |
| MS.gene035826 | MS.gene99647 | PPI |
| MS.gene064351 | MS.gene99647 | PPI |
| MS.gene035828 | MS.gene99647 | PPI |
| MS.gene99872 | MS.gene99647 | PPI |
| MS.gene043643 | MS.gene99647 | PPI |
| MS.gene043595 | MS.gene99647 | PPI |
| MS.gene043645 | MS.gene99647 | PPI |
| MS.gene043593 | MS.gene99647 | PPI |
| MS.gene064353 | MS.gene99647 | PPI |
| MS.gene035825 | MS.gene99647 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99647.t1 | MTR_1g105040 | 95.685 | 533 | 23 | 0 | 1 | 533 | 1 | 533 | 0.0 | 1028 |
| MS.gene99647.t1 | MTR_1g072250 | 67.932 | 527 | 167 | 2 | 6 | 532 | 9 | 533 | 0.0 | 706 |
| MS.gene99647.t1 | MTR_5g035590 | 27.138 | 269 | 196 | 0 | 217 | 485 | 27 | 295 | 6.23e-23 | 101 |
| MS.gene99647.t1 | MTR_5g035590 | 27.419 | 310 | 194 | 5 | 202 | 481 | 39 | 347 | 7.44e-21 | 95.5 |
| MS.gene99647.t1 | MTR_5g035590 | 28.674 | 279 | 194 | 4 | 207 | 481 | 129 | 406 | 4.73e-19 | 90.1 |
| MS.gene99647.t1 | MTR_5g035590 | 27.444 | 266 | 161 | 4 | 208 | 441 | 157 | 422 | 2.01e-12 | 69.7 |
| MS.gene99647.t1 | MTR_5g035590 | 29.091 | 220 | 127 | 2 | 281 | 500 | 7 | 197 | 9.14e-11 | 64.3 |
| MS.gene99647.t1 | MTR_5g035590 | 27.138 | 269 | 196 | 0 | 217 | 485 | 204 | 472 | 9.22e-23 | 102 |
| MS.gene99647.t1 | MTR_5g035590 | 27.419 | 310 | 194 | 5 | 202 | 481 | 216 | 524 | 1.11e-20 | 96.3 |
| MS.gene99647.t1 | MTR_5g035590 | 28.674 | 279 | 194 | 4 | 207 | 481 | 306 | 583 | 5.30e-19 | 90.9 |
| MS.gene99647.t1 | MTR_5g035590 | 27.444 | 266 | 161 | 4 | 208 | 441 | 334 | 599 | 1.86e-12 | 70.1 |
| MS.gene99647.t1 | MTR_5g035590 | 31.527 | 203 | 135 | 3 | 281 | 481 | 184 | 384 | 1.03e-11 | 67.8 |
| MS.gene99647.t1 | MTR_3g102500 | 37.391 | 115 | 65 | 4 | 6 | 117 | 26 | 136 | 5.02e-15 | 73.2 |
| MS.gene99647.t1 | MTR_1g018710 | 32.941 | 85 | 55 | 1 | 14 | 98 | 28 | 110 | 8.44e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99647.t1 | AT5G19320 | 70.482 | 498 | 146 | 1 | 3 | 499 | 5 | 502 | 0.0 | 667 |
| MS.gene99647.t1 | AT5G19320 | 70.482 | 498 | 146 | 1 | 3 | 499 | 5 | 502 | 0.0 | 667 |
| MS.gene99647.t1 | AT3G63130 | 63.855 | 498 | 174 | 2 | 5 | 502 | 8 | 499 | 0.0 | 634 |
| MS.gene99647.t1 | AT3G63130 | 63.855 | 498 | 174 | 2 | 5 | 502 | 8 | 499 | 0.0 | 634 |
| MS.gene99647.t1 | AT3G06000 | 50.543 | 184 | 78 | 2 | 319 | 502 | 16 | 186 | 6.63e-50 | 171 |
| MS.gene99647.t1 | AT1G10510 | 29.197 | 274 | 194 | 0 | 217 | 490 | 203 | 476 | 9.76e-27 | 114 |
| MS.gene99647.t1 | AT1G10510 | 26.923 | 312 | 193 | 5 | 202 | 481 | 215 | 523 | 1.54e-21 | 99.0 |
| MS.gene99647.t1 | AT1G10510 | 28.674 | 279 | 194 | 4 | 207 | 481 | 305 | 582 | 7.37e-21 | 96.7 |
| MS.gene99647.t1 | AT1G47200 | 35.354 | 99 | 60 | 2 | 2 | 98 | 46 | 142 | 3.82e-13 | 68.6 |
| MS.gene99647.t1 | AT5G43070 | 32.432 | 111 | 67 | 2 | 1 | 105 | 31 | 139 | 1.87e-12 | 65.9 |
Find 125 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTACAAGGTTCTTCATTT+TGG | 0.114174 | 1.4:-80819838 | None:intergenic |
| AGAAGGCCTTTCACAATTAA+AGG | 0.166905 | 1.4:+80819563 | MS.gene99647:CDS |
| CCTCCTAGAACTTCTTAAAA+TGG | 0.195867 | 1.4:+80818540 | MS.gene99647:CDS |
| TTTATACTTCTGAGTGAAAA+TGG | 0.211122 | 1.4:-80818374 | None:intergenic |
| GTTGCCTTATCTGATGCTTT+AGG | 0.238271 | 1.4:+80819204 | MS.gene99647:CDS |
| ACATCAAGTGCTTCTGCTTC+TGG | 0.239334 | 1.4:-80818844 | None:intergenic |
| CTTCTAAAGCCTTACTTATC+TGG | 0.252450 | 1.4:-80819545 | None:intergenic |
| TGCTTCAGCAACAGAAGTTT+TGG | 0.256040 | 1.4:+80818730 | MS.gene99647:CDS |
| TGAAGGTATTAAAGAGTTAA+TGG | 0.272016 | 1.4:+80819701 | MS.gene99647:CDS |
| TTGCCTTATCTGATGCTTTA+GGG | 0.286750 | 1.4:+80819205 | MS.gene99647:CDS |
| CAGTCATATTATTATGAAAA+TGG | 0.290406 | 1.4:-80819083 | None:intergenic |
| CTCCTTCGTCTTCCAAGTTC+AGG | 0.291124 | 1.4:-80819347 | None:intergenic |
| AACCTTTCTGACAATGCTTT+AGG | 0.321520 | 1.4:+80818916 | MS.gene99647:CDS |
| GGCCGTTCTCAATCAAATTA+TGG | 0.332398 | 1.4:+80818287 | MS.gene99647:CDS |
| GAGAAAGGTGTTAGAGCATT+TGG | 0.354722 | 1.4:+80818940 | MS.gene99647:CDS |
| AGGCTGAAGAAAATGCTAAA+AGG | 0.365052 | 1.4:+80818413 | MS.gene99647:CDS |
| TGTGAAGCGTTCTTCTTCCT+TGG | 0.371026 | 1.4:+80819137 | MS.gene99647:CDS |
| GCAAATCAAGCTTCTTCAAA+TGG | 0.371483 | 1.4:-80819236 | None:intergenic |
| CTCTCTTAACTCTGCATGCC+TGG | 0.379225 | 1.4:-80819310 | None:intergenic |
| TGCTATAGCTAATGCTCTTA+AGG | 0.382686 | 1.4:+80819374 | MS.gene99647:CDS |
| CACTCATCTCGAGAACTTCA+AGG | 0.389478 | 1.4:-80819410 | None:intergenic |
| TCTTTGACACCGTTCTTACT+AGG | 0.401557 | 1.4:-80818565 | None:intergenic |
| CACCTAAAGCATTGTCAGAA+AGG | 0.404264 | 1.4:-80818918 | None:intergenic |
| CAATTAAAGGAAATCGATCT+AGG | 0.407220 | 1.4:+80819576 | MS.gene99647:CDS |
| TAAAACCTTGGACCCGAAAC+AGG | 0.407807 | 1.4:+80818393 | MS.gene99647:CDS |
| GATTTGCGAGACAACATGTT+AGG | 0.409608 | 1.4:+80819252 | MS.gene99647:CDS |
| CAAGAAACTGCTTGGCTGCT+AGG | 0.410189 | 1.4:-80819476 | None:intergenic |
| CAGATAAGTAAGGCTTTAGA+AGG | 0.414903 | 1.4:+80819546 | MS.gene99647:CDS |
| ATATTCTCGGCTGCTCTAGA+AGG | 0.421463 | 1.4:+80818874 | MS.gene99647:CDS |
| CTCCTAGAACTTCTTAAAAT+GGG | 0.426591 | 1.4:+80818541 | MS.gene99647:CDS |
| ACAGGTCTACTTCTTTCAAC+TGG | 0.428841 | 1.4:-80818801 | None:intergenic |
| GAATTACCCGGCTCCTTCAA+TGG | 0.433941 | 1.4:-80818694 | None:intergenic |
| TTCTTTCAACTGGTCCTTGA+GGG | 0.434126 | 1.4:-80818791 | None:intergenic |
| ATACCTGAGCTTCCTGAACT+TGG | 0.437940 | 1.4:+80819335 | MS.gene99647:CDS |
| TCAATGGACTCAAAAGTTCA+TGG | 0.444089 | 1.4:-80818678 | None:intergenic |
| TTCAGCCTGTTTCGGGTCCA+AGG | 0.444600 | 1.4:-80818398 | None:intergenic |
| TCTGTGTTTGATATATCTAA+AGG | 0.449796 | 1.4:+80818625 | MS.gene99647:CDS |
| CACCGCAAACCAACATTATG+AGG | 0.452823 | 1.4:+80818456 | MS.gene99647:CDS |
| TGGAGCTGAATTCGCAGAAC+AGG | 0.455521 | 1.4:+80818266 | MS.gene99647:CDS |
| GAAGCGTTCTTCTTCCTTGG+AGG | 0.458045 | 1.4:+80819140 | MS.gene99647:CDS |
| GACAATGCTTTAGGTGAGAA+AGG | 0.459821 | 1.4:+80818925 | MS.gene99647:CDS |
| GAGCTTTATCTTATGAATGA+TGG | 0.460582 | 1.4:+80818994 | MS.gene99647:CDS |
| CAAATCAAGCTTCTTCAAAT+GGG | 0.461422 | 1.4:-80819235 | None:intergenic |
| CTGTGTTTGATATATCTAAA+GGG | 0.461508 | 1.4:+80818626 | MS.gene99647:CDS |
| AATAATATGACTGGAGATGA+AGG | 0.462940 | 1.4:+80819093 | MS.gene99647:CDS |
| CGTTGTTCCTCCACAAGGAT+AGG | 0.465776 | 1.4:+80819168 | MS.gene99647:CDS |
| TCTAATGGACCAAGCTTGTC+CGG | 0.467253 | 1.4:-80819741 | None:intergenic |
| GGATTTCGTAGTAAGATTGT+TGG | 0.471499 | 1.4:-80818353 | None:intergenic |
| CAGAGACGGAGCTCGACAAT+TGG | 0.473910 | 1.4:+80819614 | MS.gene99647:CDS |
| TCCTTGAGGGATACGAGAAT+CGG | 0.478802 | 1.4:-80818778 | None:intergenic |
| CACTCAGAAGTATAAAACCT+TGG | 0.482492 | 1.4:+80818381 | MS.gene99647:CDS |
| CAATTGTCGAGCTCCGTCTC+TGG | 0.485531 | 1.4:-80819613 | None:intergenic |
| TGATATATCTAAAGGGCAAA+GGG | 0.485851 | 1.4:+80818633 | MS.gene99647:CDS |
| CTCTGAGTAAAGCTCTTGCC+AGG | 0.488373 | 1.4:+80819292 | MS.gene99647:CDS |
| CTTGAAATCACAAAGCTGCT+TGG | 0.490046 | 1.4:+80818969 | MS.gene99647:CDS |
| CTGGCTCATCCTCATAATGT+TGG | 0.490730 | 1.4:-80818465 | None:intergenic |
| TGATGTCATGAGGATATTCT+CGG | 0.490782 | 1.4:+80818861 | MS.gene99647:CDS |
| GGGTGGTGTGGAGGATGCAC+TGG | 0.497583 | 1.4:+80819812 | MS.gene99647:CDS |
| CGATTTCCTTTAATTGTGAA+AGG | 0.500867 | 1.4:-80819569 | None:intergenic |
| GAGGAGCTTACTGCACTCTC+TGG | 0.501349 | 1.4:-80818521 | None:intergenic |
| ATATCAAACACAGATTTAAG+AGG | 0.501391 | 1.4:-80818616 | None:intergenic |
| GCAGAACCTCCATCACCATC+TGG | 0.502480 | 1.4:-80818484 | None:intergenic |
| TGCACTCTCTGGCATAAAGC+TGG | 0.505920 | 1.4:-80818510 | None:intergenic |
| TTTGAACGTCTAGACATTGA+CGG | 0.506116 | 1.4:+80819663 | MS.gene99647:CDS |
| ATCCTCATAATGTTGGTTTG+CGG | 0.506947 | 1.4:-80818458 | None:intergenic |
| CAACTTGGCAAGAAACTGCT+TGG | 0.512744 | 1.4:-80819484 | None:intergenic |
| GAGAATGAACTCAAAGATGA+AGG | 0.512971 | 1.4:+80819516 | MS.gene99647:CDS |
| CATGTTAGGTGTAGAGGGCG+GGG | 0.513870 | 1.4:+80819266 | MS.gene99647:CDS |
| TTGAGTCCATTGAAGGAGCC+GGG | 0.514701 | 1.4:+80818688 | MS.gene99647:CDS |
| ACATGTTAGGTGTAGAGGGC+GGG | 0.515882 | 1.4:+80819265 | MS.gene99647:CDS |
| GAAATCACAAAGCTGCTTGG+AGG | 0.519662 | 1.4:+80818972 | MS.gene99647:CDS |
| TTTGAGTCCATTGAAGGAGC+CGG | 0.520953 | 1.4:+80818687 | MS.gene99647:CDS |
| CTTCCAAGTTCAGGAAGCTC+AGG | 0.525920 | 1.4:-80819338 | None:intergenic |
| ATTCTCAGAGAGGTTCAACT+TGG | 0.528765 | 1.4:-80819499 | None:intergenic |
| CTTCTTTCAACTGGTCCTTG+AGG | 0.528830 | 1.4:-80818792 | None:intergenic |
| GGCTCTCACTGTGTTGCAGA+AGG | 0.536655 | 1.4:+80819635 | MS.gene99647:CDS |
| TGCTAAAAGGATTGAGGACA+AGG | 0.539008 | 1.4:+80818426 | MS.gene99647:CDS |
| TCCACAAGGATAGGCGATGA+AGG | 0.540262 | 1.4:+80819177 | MS.gene99647:CDS |
| GGCCATAATTTGATTGAGAA+CGG | 0.546531 | 1.4:-80818289 | None:intergenic |
| TTCCAGCAATAAAATCTGAC+AGG | 0.547277 | 1.4:-80818819 | None:intergenic |
| TTGATATATCTAAAGGGCAA+AGG | 0.548049 | 1.4:+80818632 | MS.gene99647:CDS |
| TTAGATGAAAATGACCCTGA+TGG | 0.550836 | 1.4:+80819759 | MS.gene99647:CDS |
| GCCTTCATCGCCTATCCTTG+TGG | 0.550966 | 1.4:-80819178 | None:intergenic |
| AGAAAATGCTAAAAGGATTG+AGG | 0.553446 | 1.4:+80818420 | MS.gene99647:CDS |
| GCTAGGCAGTTTGCTATAGC+AGG | 0.554684 | 1.4:-80819459 | None:intergenic |
| CTCATAATGTTGGTTTGCGG+TGG | 0.556142 | 1.4:-80818455 | None:intergenic |
| GGCTTTCATTGAAGCAGAGG+AGG | 0.556518 | 1.4:+80818654 | MS.gene99647:CDS |
| ACTTTGAGCTTCTCTGTGGA+AGG | 0.557077 | 1.4:-80819057 | None:intergenic |
| CAATGGACTCAAAAGTTCAT+GGG | 0.557716 | 1.4:-80818677 | None:intergenic |
| GGAAACGTCATTTCTGATGA+AGG | 0.558076 | 1.4:+80819684 | MS.gene99647:CDS |
| AGGTGCCATCCAGATAAGTA+AGG | 0.569786 | 1.4:+80819536 | MS.gene99647:CDS |
| ATCTGATGAAGAGGGTGGTG+TGG | 0.571183 | 1.4:+80819800 | MS.gene99647:CDS |
| AGACAACATGTTAGGTGTAG+AGG | 0.571641 | 1.4:+80819260 | MS.gene99647:CDS |
| ATTCCCTAAAGCATCAGATA+AGG | 0.572628 | 1.4:-80819208 | None:intergenic |
| CTACAATTCAATCAACTACA+AGG | 0.572637 | 1.4:-80819851 | None:intergenic |
| GAGGATGAGCCAGATGGTGA+TGG | 0.581559 | 1.4:+80818475 | MS.gene99647:CDS |
| CTTTGAGTTCATTCTCAGAG+AGG | 0.583247 | 1.4:-80819509 | None:intergenic |
| AAGGGCTTTCATTGAAGCAG+AGG | 0.585758 | 1.4:+80818651 | MS.gene99647:CDS |
| TAAAGCCTTACTTATCTGGA+TGG | 0.601456 | 1.4:-80819541 | None:intergenic |
| AAAATGGGTCCTAGTAAGAA+CGG | 0.601682 | 1.4:+80818556 | MS.gene99647:CDS |
| GACAACATGTTAGGTGTAGA+GGG | 0.604044 | 1.4:+80819261 | MS.gene99647:CDS |
| ATCTCGAGAACTTCAAGGCG+AGG | 0.604342 | 1.4:-80819405 | None:intergenic |
| TGCAACAGAATAACCAGAGA+CGG | 0.607097 | 1.4:+80819600 | MS.gene99647:CDS |
| GAACACTAGACAGACGCTTG+TGG | 0.616790 | 1.4:+80818321 | MS.gene99647:CDS |
| GCCGATTCTCGTATCCCTCA+AGG | 0.623072 | 1.4:+80818777 | MS.gene99647:CDS |
| TGATGAAGAGGGTGGTGTGG+AGG | 0.623155 | 1.4:+80819803 | MS.gene99647:CDS |
| CAGAAGCACTTGATGTCATG+AGG | 0.625520 | 1.4:+80818851 | MS.gene99647:CDS |
| TATCAAACACAGATTTAAGA+GGG | 0.627086 | 1.4:-80818615 | None:intergenic |
| CATTATGAGGATGAGCCAGA+TGG | 0.632658 | 1.4:+80818469 | MS.gene99647:CDS |
| AACATGTTAGGTGTAGAGGG+CGG | 0.634303 | 1.4:+80819264 | MS.gene99647:CDS |
| TTCATCGCCTATCCTTGTGG+AGG | 0.637124 | 1.4:-80819175 | None:intergenic |
| CTTGAAGTTCTCGAGATGAG+TGG | 0.640302 | 1.4:+80819411 | MS.gene99647:CDS |
| GTCTGTCTAGTGTTCTGACT+AGG | 0.640859 | 1.4:-80818313 | None:intergenic |
| GAGAACTTTGAGCTTCTCTG+TGG | 0.641453 | 1.4:-80819061 | None:intergenic |
| TGATGAAGAATCTGATGAAG+AGG | 0.644862 | 1.4:+80819791 | MS.gene99647:CDS |
| TGTCTAGTGTTCTGACTAGG+AGG | 0.651566 | 1.4:-80818310 | None:intergenic |
| TAAGAACGGTGTCAAAGAAG+CGG | 0.653554 | 1.4:+80818570 | MS.gene99647:CDS |
| GGAACAACGAAAATCCTCCA+AGG | 0.665861 | 1.4:-80819154 | None:intergenic |
| AATGACCCTGATGGAAAAGA+CGG | 0.669575 | 1.4:+80819768 | MS.gene99647:CDS |
| AGGAGCACGTGCTATAGCTG+AGG | 0.676404 | 1.4:+80819113 | MS.gene99647:CDS |
| ACAAGGATAGGCGATGAAGG+CGG | 0.690357 | 1.4:+80819180 | MS.gene99647:CDS |
| GATGAGCCAGATGGTGATGG+AGG | 0.692295 | 1.4:+80818478 | MS.gene99647:CDS |
| TTCCTGAACTTGGAAGACGA+AGG | 0.704063 | 1.4:+80819345 | MS.gene99647:CDS |
| GATGAAGAATCTGATGAAGA+GGG | 0.704078 | 1.4:+80819792 | MS.gene99647:CDS |
| GAAGAATCTGATGAAGAGGG+TGG | 0.709143 | 1.4:+80819795 | MS.gene99647:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAGTCATATTATTATGAAAA+TGG | - | chr1.4:80819086-80819105 | None:intergenic | 20.0% |
| !!! | CATTTTCATAATAATATGAC+TGG | + | chr1.4:80819084-80819103 | MS.gene99647:CDS | 20.0% |
| ! | ATATCAAACACAGATTTAAG+AGG | - | chr1.4:80818619-80818638 | None:intergenic | 25.0% |
| ! | CTGTGTTTGATATATCTAAA+GGG | + | chr1.4:80818626-80818645 | MS.gene99647:CDS | 25.0% |
| ! | GGTTATATTTGAAAAATCTC+CGG | + | chr1.4:80819722-80819741 | MS.gene99647:CDS | 25.0% |
| ! | TATCAAACACAGATTTAAGA+GGG | - | chr1.4:80818618-80818637 | None:intergenic | 25.0% |
| ! | TCTGTGTTTGATATATCTAA+AGG | + | chr1.4:80818625-80818644 | MS.gene99647:CDS | 25.0% |
| ! | TTTATACTTCTGAGTGAAAA+TGG | - | chr1.4:80818377-80818396 | None:intergenic | 25.0% |
| !!! | ATTTTAGTGAAAGAATTACC+CGG | - | chr1.4:80818709-80818728 | None:intergenic | 25.0% |
| !!! | TGAAGGTATTAAAGAGTTAA+TGG | + | chr1.4:80819701-80819720 | MS.gene99647:CDS | 25.0% |
| AATAATATGACTGGAGATGA+AGG | + | chr1.4:80819093-80819112 | MS.gene99647:CDS | 30.0% | |
| AGAAAATGCTAAAAGGATTG+AGG | + | chr1.4:80818420-80818439 | MS.gene99647:CDS | 30.0% | |
| CAAATCAAGCTTCTTCAAAT+GGG | - | chr1.4:80819238-80819257 | None:intergenic | 30.0% | |
| CAATTAAAGGAAATCGATCT+AGG | + | chr1.4:80819576-80819595 | MS.gene99647:CDS | 30.0% | |
| CGATTTCCTTTAATTGTGAA+AGG | - | chr1.4:80819572-80819591 | None:intergenic | 30.0% | |
| CTCCTAGAACTTCTTAAAAT+GGG | + | chr1.4:80818541-80818560 | MS.gene99647:CDS | 30.0% | |
| TGATATATCTAAAGGGCAAA+GGG | + | chr1.4:80818633-80818652 | MS.gene99647:CDS | 30.0% | |
| TTGATATATCTAAAGGGCAA+AGG | + | chr1.4:80818632-80818651 | MS.gene99647:CDS | 30.0% | |
| ! | AACTACAAGGTTCTTCATTT+TGG | - | chr1.4:80819841-80819860 | None:intergenic | 30.0% |
| ! | GAGCTTTATCTTATGAATGA+TGG | + | chr1.4:80818994-80819013 | MS.gene99647:CDS | 30.0% |
| AAAATGGGTCCTAGTAAGAA+CGG | + | chr1.4:80818556-80818575 | MS.gene99647:CDS | 35.0% | |
| AACCTTTCTGACAATGCTTT+AGG | + | chr1.4:80818916-80818935 | MS.gene99647:CDS | 35.0% | |
| AGAAGGCCTTTCACAATTAA+AGG | + | chr1.4:80819563-80819582 | MS.gene99647:CDS | 35.0% | |
| AGGCTGAAGAAAATGCTAAA+AGG | + | chr1.4:80818413-80818432 | MS.gene99647:CDS | 35.0% | |
| CCTCCTAGAACTTCTTAAAA+TGG | + | chr1.4:80818540-80818559 | MS.gene99647:CDS | 35.0% | |
| GAGAATGAACTCAAAGATGA+AGG | + | chr1.4:80819516-80819535 | MS.gene99647:CDS | 35.0% | |
| GATGAAGAATCTGATGAAGA+GGG | + | chr1.4:80819792-80819811 | MS.gene99647:CDS | 35.0% | |
| GCAAATCAAGCTTCTTCAAA+TGG | - | chr1.4:80819239-80819258 | None:intergenic | 35.0% | |
| GGATTTCGTAGTAAGATTGT+TGG | - | chr1.4:80818356-80818375 | None:intergenic | 35.0% | |
| GGCCATAATTTGATTGAGAA+CGG | - | chr1.4:80818292-80818311 | None:intergenic | 35.0% | |
| TAAAGCCTTACTTATCTGGA+TGG | - | chr1.4:80819544-80819563 | None:intergenic | 35.0% | |
| TGATGAAGAATCTGATGAAG+AGG | + | chr1.4:80819791-80819810 | MS.gene99647:CDS | 35.0% | |
| TGATGTCATGAGGATATTCT+CGG | + | chr1.4:80818861-80818880 | MS.gene99647:CDS | 35.0% | |
| TGCTATAGCTAATGCTCTTA+AGG | + | chr1.4:80819374-80819393 | MS.gene99647:CDS | 35.0% | |
| TTAGATGAAAATGACCCTGA+TGG | + | chr1.4:80819759-80819778 | MS.gene99647:CDS | 35.0% | |
| TTCCAGCAATAAAATCTGAC+AGG | - | chr1.4:80818822-80818841 | None:intergenic | 35.0% | |
| TTGCCTTATCTGATGCTTTA+GGG | + | chr1.4:80819205-80819224 | MS.gene99647:CDS | 35.0% | |
| TTTGAACGTCTAGACATTGA+CGG | + | chr1.4:80819663-80819682 | MS.gene99647:CDS | 35.0% | |
| ! | ATTCCCTAAAGCATCAGATA+AGG | - | chr1.4:80819211-80819230 | None:intergenic | 35.0% |
| ! | CAATGGACTCAAAAGTTCAT+GGG | - | chr1.4:80818680-80818699 | None:intergenic | 35.0% |
| ! | CACTCAGAAGTATAAAACCT+TGG | + | chr1.4:80818381-80818400 | MS.gene99647:CDS | 35.0% |
| ! | TCAATGGACTCAAAAGTTCA+TGG | - | chr1.4:80818681-80818700 | None:intergenic | 35.0% |
| !! | ATCCTCATAATGTTGGTTTG+CGG | - | chr1.4:80818461-80818480 | None:intergenic | 35.0% |
| !! | CAGATAAGTAAGGCTTTAGA+AGG | + | chr1.4:80819546-80819565 | MS.gene99647:CDS | 35.0% |
| !! | CTTCTAAAGCCTTACTTATC+TGG | - | chr1.4:80819548-80819567 | None:intergenic | 35.0% |
| !! | GACCCATTTTAAGAAGTTCT+AGG | - | chr1.4:80818546-80818565 | None:intergenic | 35.0% |
| !! | TCAGGGTCATTTTCATCTAA+TGG | - | chr1.4:80819759-80819778 | None:intergenic | 35.0% |
| !! | TGAACTTTTGAGTCCATTGA+AGG | + | chr1.4:80818681-80818700 | MS.gene99647:CDS | 35.0% |
| !!! | AGCAACAGAAGTTTTGGATT+AGG | + | chr1.4:80818736-80818755 | MS.gene99647:CDS | 35.0% |
| !!! | CCATTTTAAGAAGTTCTAGG+AGG | - | chr1.4:80818543-80818562 | None:intergenic | 35.0% |
| AATGACCCTGATGGAAAAGA+CGG | + | chr1.4:80819768-80819787 | MS.gene99647:CDS | 40.0% | |
| ACAGGTCTACTTCTTTCAAC+TGG | - | chr1.4:80818804-80818823 | None:intergenic | 40.0% | |
| AGACAACATGTTAGGTGTAG+AGG | + | chr1.4:80819260-80819279 | MS.gene99647:CDS | 40.0% | |
| ATTCTCAGAGAGGTTCAACT+TGG | - | chr1.4:80819502-80819521 | None:intergenic | 40.0% | |
| CTTGAAATCACAAAGCTGCT+TGG | + | chr1.4:80818969-80818988 | MS.gene99647:CDS | 40.0% | |
| GACAACATGTTAGGTGTAGA+GGG | + | chr1.4:80819261-80819280 | MS.gene99647:CDS | 40.0% | |
| GATTTGCGAGACAACATGTT+AGG | + | chr1.4:80819252-80819271 | MS.gene99647:CDS | 40.0% | |
| GGAAACGTCATTTCTGATGA+AGG | + | chr1.4:80819684-80819703 | MS.gene99647:CDS | 40.0% | |
| GGCCGTTCTCAATCAAATTA+TGG | + | chr1.4:80818287-80818306 | MS.gene99647:CDS | 40.0% | |
| GTTGCCTTATCTGATGCTTT+AGG | + | chr1.4:80819204-80819223 | MS.gene99647:CDS | 40.0% | |
| TCTTTGACACCGTTCTTACT+AGG | - | chr1.4:80818568-80818587 | None:intergenic | 40.0% | |
| TGCAACAGAATAACCAGAGA+CGG | + | chr1.4:80819600-80819619 | MS.gene99647:CDS | 40.0% | |
| TGCTAAAAGGATTGAGGACA+AGG | + | chr1.4:80818426-80818445 | MS.gene99647:CDS | 40.0% | |
| TTCTTTCAACTGGTCCTTGA+GGG | - | chr1.4:80818794-80818813 | None:intergenic | 40.0% | |
| ! | ATTTTCGTTGTTCCTCCACA+AGG | + | chr1.4:80819163-80819182 | MS.gene99647:CDS | 40.0% |
| ! | CATTTTCTTCAGCCTGTTTC+GGG | - | chr1.4:80818408-80818427 | None:intergenic | 40.0% |
| ! | CTTTGAGTTCATTCTCAGAG+AGG | - | chr1.4:80819512-80819531 | None:intergenic | 40.0% |
| ! | GACAATGCTTTAGGTGAGAA+AGG | + | chr1.4:80818925-80818944 | MS.gene99647:CDS | 40.0% |
| ! | GACCTGTCAGATTTTATTGC+TGG | + | chr1.4:80818817-80818836 | MS.gene99647:CDS | 40.0% |
| ! | GCATTTTCTTCAGCCTGTTT+CGG | - | chr1.4:80818409-80818428 | None:intergenic | 40.0% |
| ! | TAAGAACGGTGTCAAAGAAG+CGG | + | chr1.4:80818570-80818589 | MS.gene99647:CDS | 40.0% |
| ! | TGCTTCAGCAACAGAAGTTT+TGG | + | chr1.4:80818730-80818749 | MS.gene99647:CDS | 40.0% |
| !! | CACCTAAAGCATTGTCAGAA+AGG | - | chr1.4:80818921-80818940 | None:intergenic | 40.0% |
| !! | GAGAAAGGTGTTAGAGCATT+TGG | + | chr1.4:80818940-80818959 | MS.gene99647:CDS | 40.0% |
| AACATGTTAGGTGTAGAGGG+CGG | + | chr1.4:80819264-80819283 | MS.gene99647:CDS | 45.0% | |
| AAGGGCTTTCATTGAAGCAG+AGG | + | chr1.4:80818651-80818670 | MS.gene99647:CDS | 45.0% | |
| ACATCAAGTGCTTCTGCTTC+TGG | - | chr1.4:80818847-80818866 | None:intergenic | 45.0% | |
| ACTTTGAGCTTCTCTGTGGA+AGG | - | chr1.4:80819060-80819079 | None:intergenic | 45.0% | |
| ATACCTGAGCTTCCTGAACT+TGG | + | chr1.4:80819335-80819354 | MS.gene99647:CDS | 45.0% | |
| CAACTTGGCAAGAAACTGCT+TGG | - | chr1.4:80819487-80819506 | None:intergenic | 45.0% | |
| CACCGCAAACCAACATTATG+AGG | + | chr1.4:80818456-80818475 | MS.gene99647:CDS | 45.0% | |
| CACTCATCTCGAGAACTTCA+AGG | - | chr1.4:80819413-80819432 | None:intergenic | 45.0% | |
| CATTATGAGGATGAGCCAGA+TGG | + | chr1.4:80818469-80818488 | MS.gene99647:CDS | 45.0% | |
| CTGGCTCATCCTCATAATGT+TGG | - | chr1.4:80818468-80818487 | None:intergenic | 45.0% | |
| CTTCTTTCAACTGGTCCTTG+AGG | - | chr1.4:80818795-80818814 | None:intergenic | 45.0% | |
| CTTGAAGTTCTCGAGATGAG+TGG | + | chr1.4:80819411-80819430 | MS.gene99647:CDS | 45.0% | |
| GAAAAATCTCCGGACAAGCT+TGG | + | chr1.4:80819732-80819751 | MS.gene99647:CDS | 45.0% | |
| GAAATCACAAAGCTGCTTGG+AGG | + | chr1.4:80818972-80818991 | MS.gene99647:CDS | 45.0% | |
| GAAGAATCTGATGAAGAGGG+TGG | + | chr1.4:80819795-80819814 | MS.gene99647:CDS | 45.0% | |
| GAGAACTTTGAGCTTCTCTG+TGG | - | chr1.4:80819064-80819083 | None:intergenic | 45.0% | |
| GGAACAACGAAAATCCTCCA+AGG | - | chr1.4:80819157-80819176 | None:intergenic | 45.0% | |
| GTCTGTCTAGTGTTCTGACT+AGG | - | chr1.4:80818316-80818335 | None:intergenic | 45.0% | |
| TAAAACCTTGGACCCGAAAC+AGG | + | chr1.4:80818393-80818412 | MS.gene99647:CDS | 45.0% | |
| TCCTTGAGGGATACGAGAAT+CGG | - | chr1.4:80818781-80818800 | None:intergenic | 45.0% | |
| TGTCTAGTGTTCTGACTAGG+AGG | - | chr1.4:80818313-80818332 | None:intergenic | 45.0% | |
| TTCCTGAACTTGGAAGACGA+AGG | + | chr1.4:80819345-80819364 | MS.gene99647:CDS | 45.0% | |
| TTTGAGTCCATTGAAGGAGC+CGG | + | chr1.4:80818687-80818706 | MS.gene99647:CDS | 45.0% | |
| ! | AGGTGCCATCCAGATAAGTA+AGG | + | chr1.4:80819536-80819555 | MS.gene99647:CDS | 45.0% |
| ! | ATATTCTCGGCTGCTCTAGA+AGG | + | chr1.4:80818874-80818893 | MS.gene99647:CDS | 45.0% |
| ! | CATCACCGTCTTTTCCATCA+GGG | - | chr1.4:80819776-80819795 | None:intergenic | 45.0% |
| ! | TCATCACCGTCTTTTCCATC+AGG | - | chr1.4:80819777-80819796 | None:intergenic | 45.0% |
| ! | TCTAATGGACCAAGCTTGTC+CGG | - | chr1.4:80819744-80819763 | None:intergenic | 45.0% |
| ! | TGTGAAGCGTTCTTCTTCCT+TGG | + | chr1.4:80819137-80819156 | MS.gene99647:CDS | 45.0% |
| !! | CAGAAGCACTTGATGTCATG+AGG | + | chr1.4:80818851-80818870 | MS.gene99647:CDS | 45.0% |
| !! | CTCATAATGTTGGTTTGCGG+TGG | - | chr1.4:80818458-80818477 | None:intergenic | 45.0% |
| ACAAGGATAGGCGATGAAGG+CGG | + | chr1.4:80819180-80819199 | MS.gene99647:CDS | 50.0% | |
| ACATGTTAGGTGTAGAGGGC+GGG | + | chr1.4:80819265-80819284 | MS.gene99647:CDS | 50.0% | |
| ATCTCGAGAACTTCAAGGCG+AGG | - | chr1.4:80819408-80819427 | None:intergenic | 50.0% | |
| ATCTGATGAAGAGGGTGGTG+TGG | + | chr1.4:80819800-80819819 | MS.gene99647:CDS | 50.0% | |
| CAAGAAACTGCTTGGCTGCT+AGG | - | chr1.4:80819479-80819498 | None:intergenic | 50.0% | |
| CGTTGTTCCTCCACAAGGAT+AGG | + | chr1.4:80819168-80819187 | MS.gene99647:CDS | 50.0% | |
| CTCCTTCGTCTTCCAAGTTC+AGG | - | chr1.4:80819350-80819369 | None:intergenic | 50.0% | |
| CTCTCTTAACTCTGCATGCC+TGG | - | chr1.4:80819313-80819332 | None:intergenic | 50.0% | |
| CTCTGAGTAAAGCTCTTGCC+AGG | + | chr1.4:80819292-80819311 | MS.gene99647:CDS | 50.0% | |
| CTTCCAAGTTCAGGAAGCTC+AGG | - | chr1.4:80819341-80819360 | None:intergenic | 50.0% | |
| GAACACTAGACAGACGCTTG+TGG | + | chr1.4:80818321-80818340 | MS.gene99647:CDS | 50.0% | |
| GAATTACCCGGCTCCTTCAA+TGG | - | chr1.4:80818697-80818716 | None:intergenic | 50.0% | |
| GGCTTTCATTGAAGCAGAGG+AGG | + | chr1.4:80818654-80818673 | MS.gene99647:CDS | 50.0% | |
| TCCACAAGGATAGGCGATGA+AGG | + | chr1.4:80819177-80819196 | MS.gene99647:CDS | 50.0% | |
| TGCACTCTCTGGCATAAAGC+TGG | - | chr1.4:80818513-80818532 | None:intergenic | 50.0% | |
| TGGAGCTGAATTCGCAGAAC+AGG | + | chr1.4:80818266-80818285 | MS.gene99647:CDS | 50.0% | |
| TTCATCGCCTATCCTTGTGG+AGG | - | chr1.4:80819178-80819197 | None:intergenic | 50.0% | |
| TTGAGTCCATTGAAGGAGCC+GGG | + | chr1.4:80818688-80818707 | MS.gene99647:CDS | 50.0% | |
| ! | GAAGCGTTCTTCTTCCTTGG+AGG | + | chr1.4:80819140-80819159 | MS.gene99647:CDS | 50.0% |
| !! | GCTAGGCAGTTTGCTATAGC+AGG | - | chr1.4:80819462-80819481 | None:intergenic | 50.0% |
| CAATTGTCGAGCTCCGTCTC+TGG | - | chr1.4:80819616-80819635 | None:intergenic | 55.0% | |
| CAGAGACGGAGCTCGACAAT+TGG | + | chr1.4:80819614-80819633 | MS.gene99647:CDS | 55.0% | |
| CATGTTAGGTGTAGAGGGCG+GGG | + | chr1.4:80819266-80819285 | MS.gene99647:CDS | 55.0% | |
| GAGGAGCTTACTGCACTCTC+TGG | - | chr1.4:80818524-80818543 | None:intergenic | 55.0% | |
| GAGGATGAGCCAGATGGTGA+TGG | + | chr1.4:80818475-80818494 | MS.gene99647:CDS | 55.0% | |
| GCAGAACCTCCATCACCATC+TGG | - | chr1.4:80818487-80818506 | None:intergenic | 55.0% | |
| GCCTTCATCGCCTATCCTTG+TGG | - | chr1.4:80819181-80819200 | None:intergenic | 55.0% | |
| GGCTCTCACTGTGTTGCAGA+AGG | + | chr1.4:80819635-80819654 | MS.gene99647:CDS | 55.0% | |
| TGATGAAGAGGGTGGTGTGG+AGG | + | chr1.4:80819803-80819822 | MS.gene99647:CDS | 55.0% | |
| ! | AGGAGCACGTGCTATAGCTG+AGG | + | chr1.4:80819113-80819132 | MS.gene99647:CDS | 55.0% |
| ! | GCCGATTCTCGTATCCCTCA+AGG | + | chr1.4:80818777-80818796 | MS.gene99647:CDS | 55.0% |
| ! | TTCAGCCTGTTTCGGGTCCA+AGG | - | chr1.4:80818401-80818420 | None:intergenic | 55.0% |
| !! | GATGAGCCAGATGGTGATGG+AGG | + | chr1.4:80818478-80818497 | MS.gene99647:CDS | 55.0% |
| GGGTGGTGTGGAGGATGCAC+TGG | + | chr1.4:80819812-80819831 | MS.gene99647:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 80818265 | 80819866 | 80818265 | ID=MS.gene99647 |
| chr1.4 | mRNA | 80818265 | 80819866 | 80818265 | ID=MS.gene99647.t1;Parent=MS.gene99647 |
| chr1.4 | exon | 80818265 | 80819866 | 80818265 | ID=MS.gene99647.t1.exon1;Parent=MS.gene99647.t1 |
| chr1.4 | CDS | 80818265 | 80819866 | 80818265 | ID=cds.MS.gene99647.t1;Parent=MS.gene99647.t1 |
| Gene Sequence |
| Protein sequence |
