AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080047985.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080047985.01.T01 MTR_1g063120 77.330 397 59 4 2 370 42 435 0.0 568
MsG0080047985.01.T01 MTR_1g063110 65.995 397 102 3 1 370 41 431 4.70e-174 496
MsG0080047985.01.T01 MTR_4g057730 46.096 397 172 8 3 370 42 425 4.82e-111 332
MsG0080047985.01.T01 MTR_4g057730 46.096 397 172 8 3 370 42 425 7.26e-111 332
MsG0080047985.01.T01 MTR_4g057730 46.096 397 172 8 3 370 42 425 4.99e-110 332
MsG0080047985.01.T01 MTR_2g095510 40.909 396 191 7 3 370 42 422 1.28e-95 293
MsG0080047985.01.T01 MTR_2g095510 40.909 396 191 7 3 370 42 422 8.28e-95 293
MsG0080047985.01.T01 MTR_8g039720 37.717 403 202 10 6 370 55 446 8.91e-72 234
MsG0080047985.01.T01 MTR_1g026310 36.735 392 217 7 5 370 57 443 5.90e-68 224
MsG0080047985.01.T01 MTR_5g027480 33.333 399 216 8 5 370 57 438 4.43e-65 216
MsG0080047985.01.T01 MTR_4g077900 34.584 373 202 7 28 370 1 361 6.31e-60 201
MsG0080047985.01.T01 MTR_1g090737 34.826 402 211 12 1 370 67 449 6.01e-59 200
MsG0080047985.01.T01 MTR_5g027500 31.941 407 223 8 5 370 58 451 9.36e-57 194
MsG0080047985.01.T01 MTR_4g128337 34.278 388 215 9 7 365 50 426 2.02e-56 193
MsG0080047985.01.T01 MTR_1g073180 37.532 389 195 12 7 370 74 439 1.31e-52 182
MsG0080047985.01.T01 MTR_1g073180 37.532 389 195 12 7 370 52 417 2.02e-52 182
MsG0080047985.01.T01 MTR_3g088880 31.421 401 216 10 3 370 65 439 1.99e-51 180
MsG0080047985.01.T01 MTR_3g088870 31.592 402 217 9 3 370 64 441 2.40e-51 180
MsG0080047985.01.T01 MTR_2g105570 31.172 401 225 9 7 370 45 431 9.66e-49 172
MsG0080047985.01.T01 MTR_1g026470 34.561 353 200 7 5 331 57 404 2.31e-48 169
MsG0080047985.01.T01 MTR_1g026430 34.286 350 199 7 5 328 57 401 1.94e-47 166
MsG0080047985.01.T01 MTR_5g007640 30.769 416 215 10 1 370 82 470 2.95e-47 169
MsG0080047985.01.T01 MTR_3g460770 31.172 401 224 14 3 370 43 424 6.61e-47 167
MsG0080047985.01.T01 MTR_4g005750 31.566 396 216 9 6 365 43 419 8.80e-47 167
MsG0080047985.01.T01 MTR_1g026350 45.652 92 50 0 5 96 57 148 1.07e-20 88.6
MsG0080047985.01.T01 MTR_1569s0010 24.752 404 248 12 16 370 22 418 3.64e-20 92.4
MsG0080047985.01.T01 MTR_3g084450 29.442 197 123 6 2 182 91 287 1.24e-12 69.7
MsG0080047985.01.T01 MTR_8g083170 30.303 198 120 6 3 182 94 291 2.47e-12 68.6
MsG0080047985.01.T01 MTR_3g084470 42.424 66 38 0 305 370 495 560 5.80e-11 64.3
MsG0080047985.01.T01 MTR_3g084470 26.471 204 119 5 2 182 89 284 7.24e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080047985.01.T01 AT4G05160 44.924 394 179 6 5 370 44 427 4.74e-108 327
MsG0080047985.01.T01 AT1G20480 36.951 387 217 7 7 370 66 448 1.30e-71 234
MsG0080047985.01.T01 AT1G20510 35.443 395 212 8 5 370 47 427 6.98e-69 224
MsG0080047985.01.T01 AT1G20510 35.443 395 212 8 5 370 47 427 8.14e-69 224
MsG0080047985.01.T01 AT1G20510 35.443 395 212 8 5 370 47 427 4.48e-68 224
MsG0080047985.01.T01 AT1G20500 35.749 414 183 10 6 370 54 433 3.74e-66 219
MsG0080047985.01.T01 AT4G19010 33.671 395 220 10 6 370 63 445 2.02e-62 209
MsG0080047985.01.T01 AT1G20490 34.491 403 193 10 4 362 52 427 2.05e-61 204
MsG0080047985.01.T01 AT1G20490 34.491 403 193 10 4 362 52 427 2.05e-61 204
MsG0080047985.01.T01 AT5G63380 32.911 395 212 9 7 370 69 441 2.43e-59 201
MsG0080047985.01.T01 AT5G38120 34.010 394 216 9 6 370 55 433 2.85e-58 196
MsG0080047985.01.T01 AT5G38120 34.010 394 216 9 6 370 55 433 2.85e-58 196
MsG0080047985.01.T01 AT5G38120 34.010 394 216 9 6 370 55 433 7.64e-58 196
MsG0080047985.01.T01 AT5G38120 34.010 394 216 9 6 370 55 433 1.78e-57 196
MsG0080047985.01.T01 AT1G65060 32.836 402 223 9 1 370 61 447 7.67e-54 185
MsG0080047985.01.T01 AT1G65060 32.836 402 223 9 1 370 61 447 1.68e-53 186
MsG0080047985.01.T01 AT3G21240 32.836 402 215 10 6 370 54 437 1.31e-51 179
MsG0080047985.01.T01 AT3G21240 32.836 402 215 10 6 370 54 437 1.31e-51 179
MsG0080047985.01.T01 AT3G21240 32.918 401 214 10 7 370 55 437 3.25e-51 179
MsG0080047985.01.T01 AT3G21230 33.002 403 221 10 4 370 62 451 6.06e-46 164
MsG0080047985.01.T01 AT3G21230 33.002 403 221 10 4 370 62 451 1.10e-45 164
MsG0080047985.01.T01 AT3G21230 33.002 403 221 10 4 370 62 451 1.25e-45 164
MsG0080047985.01.T01 AT1G51680 31.051 409 208 11 6 365 56 439 2.54e-44 159
MsG0080047985.01.T01 AT1G51680 31.051 409 208 11 6 365 56 439 6.86e-44 159
MsG0080047985.01.T01 AT1G51680 31.127 408 207 11 7 365 57 439 9.15e-44 159
MsG0080047985.01.T01 AT1G62940 27.990 393 238 9 3 365 41 418 9.86e-40 148
MsG0080047985.01.T01 AT3G21230 31.316 380 212 10 2 345 60 426 8.46e-34 130
MsG0080047985.01.T01 AT3G48990 26.031 388 235 13 15 370 30 397 3.61e-19 89.4
MsG0080047985.01.T01 AT4G14070 32.474 194 117 6 3 182 112 305 2.47e-13 72.0
MsG0080047985.01.T01 AT4G14070 45.455 66 36 0 305 370 516 581 2.84e-11 65.5
MsG0080047985.01.T01 AT3G23790 46.970 66 35 0 305 370 500 565 3.09e-12 68.6

Find 163 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAATCAATTAGGGGAAATT+TGG 0.173843 contig159end:+12331 MsG0080047985.01.T01:CDS
ATGTTTGCAAACTAACAATT+TGG 0.209952 contig159end:-12293 MsG0080047985.01.T01:intergenic
TGGCGGCGGTGGAGAAGTTT+AGG 0.233984 contig159end:+11036 MsG0080047985.01.T01:CDS
GGAGCCTTCCTTTCGAATTC+AGG 0.241422 contig159end:+12237 MsG0080047985.01.T01:CDS
CCCCTTCCACCGAATCAATT+AGG 0.246857 contig159end:+12321 MsG0080047985.01.T01:CDS
TACCTGAATGATTTCAATCT+TGG 0.247777 contig159end:-11213 MsG0080047985.01.T01:intergenic
ACGTTTCCCCGTCTGCTTCC+TGG 0.262630 contig159end:+10469 MsG0080047985.01.T01:CDS
GCCGGTGGTGCTGCTCCTCT+TGG 0.301131 contig159end:+11155 MsG0080047985.01.T01:CDS
CTTTCGAATTCAGGTTCAAC+TGG 0.304881 contig159end:+12246 MsG0080047985.01.T01:CDS
CGTCCAACCCTGATCATTAA+TGG 0.305183 contig159end:-12578 MsG0080047985.01.T01:intergenic
CCCTTCCACCGAATCAATTA+GGG 0.305642 contig159end:+12322 MsG0080047985.01.T01:CDS
AACAATGGTTTGTTAAGATA+TGG 0.309317 contig159end:+15178 MsG0080047985.01.T01:three_prime_UTR
GATCAGGGTTGGACGCTTAC+TGG 0.310527 contig159end:+12586 MsG0080047985.01.T01:CDS
CATCCTGAAATTTCTGATGC+TGG 0.321468 contig159end:+12885 MsG0080047985.01.T01:three_prime_UTR
GCCCAAGATTGAAATCATTC+AGG 0.336241 contig159end:+11211 MsG0080047985.01.T01:CDS
CATGGCGGGTAGATTTGATT+TGG 0.339507 contig159end:+11004 MsG0080047985.01.T01:CDS
TGGACGCTTACTGGCGATCT+TGG 0.342990 contig159end:+12595 MsG0080047985.01.T01:CDS
TTCAAAATTGTTGAAGAGTT+CGG 0.343475 contig159end:-10600 MsG0080047985.01.T01:intergenic
AATCTTTCCCGTGGGGACTT+TGG 0.356022 contig159end:-15022 MsG0080047985.01.T01:intergenic
GGCGGCGGTGGAGAAGTTTA+GGG 0.357431 contig159end:+11037 MsG0080047985.01.T01:CDS
CACTGGAACCTCGCCAGCTT+TGG 0.359502 contig159end:-13006 MsG0080047985.01.T01:intergenic
GCGGTGATTCTGTATTCTTC+AGG 0.365718 contig159end:+10791 MsG0080047985.01.T01:CDS
CATGTGCCCGGACGATATTC+CGG 0.367781 contig159end:+10739 MsG0080047985.01.T01:CDS
ATCCTGAAATTTCTGATGCT+GGG 0.385883 contig159end:+12886 MsG0080047985.01.T01:three_prime_UTR
TGTTTGCAAACTAACAATTT+GGG 0.388733 contig159end:-12292 MsG0080047985.01.T01:intergenic
ATCTTACCTTGCATCATAAC+AGG 0.391547 contig159end:-12363 MsG0080047985.01.T01:intergenic
ACCTCGCCAGCTTTGGCATC+AGG 0.394057 contig159end:-12999 MsG0080047985.01.T01:intergenic
AGTTCAGAGACGGTGTATAA+AGG 0.399320 contig159end:-10530 MsG0080047985.01.T01:intergenic
CCCGGTTTGGTTGTCGGCGA+GGG 0.399497 contig159end:-10333 MsG0080047985.01.T01:intergenic
GGATTGCGAAATGGTACTTC+TGG 0.402993 contig159end:-10762 MsG0080047985.01.T01:intergenic
TTGGCGAGATTCATTACATT+GGG 0.406007 contig159end:-15242 MsG0080047985.01.T01:intergenic
CAAATTTCCCCTAATTGATT+CGG 0.406286 contig159end:-12330 MsG0080047985.01.T01:intergenic
GACTTGTTCGACGCAATGAT+GGG 0.414669 contig159end:-10671 MsG0080047985.01.T01:intergenic
GCCCTCGCCGACAACCAAAC+CGG 0.416063 contig159end:+10332 MsG0080047985.01.T01:CDS
AAAACAGACCATTAATGATC+AGG 0.419353 contig159end:+12570 MsG0080047985.01.T01:CDS
GGATTCCCCGGTTTGGTTGT+CGG 0.421063 contig159end:-10339 MsG0080047985.01.T01:intergenic
GTTATAATAAATTAGTGCCT+TGG 0.423596 contig159end:+15089 MsG0080047985.01.T01:three_prime_UTR
ACGGGGAAACGTATGGAGTT+AGG 0.429974 contig159end:-10458 MsG0080047985.01.T01:intergenic
ACCTGAATGATTTCAATCTT+GGG 0.431977 contig159end:-11212 MsG0080047985.01.T01:intergenic
CTAGAAAACGACAGTACTCC+TGG 0.433420 contig159end:-15207 MsG0080047985.01.T01:intergenic
CACCTATGGCGACGATGGCC+AGG 0.434503 contig159end:-10487 MsG0080047985.01.T01:intergenic
CCGGTGGTGCTGCTCCTCTT+GGG 0.441068 contig159end:+11156 MsG0080047985.01.T01:CDS
CCCTCGCCGACAACCAAACC+GGG 0.444750 contig159end:+10333 MsG0080047985.01.T01:CDS
CCCAAGAGGAGCAGCACCAC+CGG 0.446490 contig159end:-11156 MsG0080047985.01.T01:intergenic
ACAATTTGGGATTCTACACT+TGG 0.446736 contig159end:-12279 MsG0080047985.01.T01:intergenic
AGGCACCACGGGGAAAAGTA+AGG 0.446955 contig159end:+10811 MsG0080047985.01.T01:CDS
TTCGAGTTGACTGAAGGTTA+AGG 0.450175 contig159end:-10360 MsG0080047985.01.T01:intergenic
GGAGAAGACTTTGGCGGCGG+TGG 0.450963 contig159end:+11025 MsG0080047985.01.T01:CDS
TTGGTTGTCGGCGAGGGCAA+CGG 0.452010 contig159end:-10327 MsG0080047985.01.T01:intergenic
AAGAGTTGATCAAGTGCAAC+GGG 0.452222 contig159end:+12659 MsG0080047985.01.T01:three_prime_UTR
AACCTCCTCACTGTCACGGC+AGG 0.452817 contig159end:-15141 MsG0080047985.01.T01:intergenic
GATAGCAGGAGTGGCGGATC+AGG 0.452819 contig159end:+10871 MsG0080047985.01.T01:CDS
TCGCCGTTGCTATGAAGTTC+CGG 0.453478 contig159end:-10850 MsG0080047985.01.T01:intergenic
CCCTAATTGATTCGGTGGAA+GGG 0.455832 contig159end:-12322 MsG0080047985.01.T01:intergenic
TCAAGAATTTGTAGCAAAAG+AGG 0.456594 contig159end:+13073 MsG0080047985.01.T01:three_prime_UTR
CTGTATTCTTCAGGCACCAC+GGG 0.457302 contig159end:+10800 MsG0080047985.01.T01:CDS
ACCCCAGCATCAGAAATTTC+AGG 0.460523 contig159end:-12888 MsG0080047985.01.T01:intergenic
CTCTGCAGATGTCAAAGTTA+TGG 0.460906 contig159end:+15116 MsG0080047985.01.T01:three_prime_UTR
GAGCAGAGAGTCGGAGATGT+TGG 0.463522 contig159end:-10393 MsG0080047985.01.T01:intergenic
ATCATTGCGTCGAACAAGTC+AGG 0.463613 contig159end:+10674 MsG0080047985.01.T01:CDS
GATACTGTTACAACGAGCTT+GGG 0.464304 contig159end:-10578 MsG0080047985.01.T01:intergenic
AGGGAACACGGTGGTGTCCA+TGG 0.465521 contig159end:+10986 MsG0080047985.01.T01:CDS
GAGGGCAACGGTGTCGGCCA+TGG 0.466523 contig159end:-10315 MsG0080047985.01.T01:intergenic
CCCCTAATTGATTCGGTGGA+AGG 0.472230 contig159end:-12323 MsG0080047985.01.T01:intergenic
TTGACCAGCTCCACCATCAC+TGG 0.472578 contig159end:-11083 MsG0080047985.01.T01:intergenic
AACACGGTGGTGTCCATGGC+GGG 0.473934 contig159end:+10990 MsG0080047985.01.T01:CDS
CGCCACGTCGGATTGCGAAA+TGG 0.478309 contig159end:-10771 MsG0080047985.01.T01:intergenic
ATTTGATTTGGAGAAGACTT+TGG 0.479820 contig159end:+11016 MsG0080047985.01.T01:CDS
TGCAGGTTGCACCATACAAA+AGG 0.481182 contig159end:+14970 MsG0080047985.01.T01:intron
CCTAATTGATTCGGTGGAAG+GGG 0.482338 contig159end:-12321 MsG0080047985.01.T01:intergenic
AGGTTAAGGATTCCCCGGTT+TGG 0.483386 contig159end:-10346 MsG0080047985.01.T01:intergenic
TGACTTGTTCGACGCAATGA+TGG 0.483542 contig159end:-10672 MsG0080047985.01.T01:intergenic
TTCATAGCAACGGCGATAGC+AGG 0.490260 contig159end:+10857 MsG0080047985.01.T01:CDS
TCCGACTCTCTGCTCAGTCT+CGG 0.493527 contig159end:+10401 MsG0080047985.01.T01:CDS
TTTGGCGAGATTCATTACAT+TGG 0.495508 contig159end:-15243 MsG0080047985.01.T01:intergenic
TCCGCCAGTGATGGTGGAGC+TGG 0.498162 contig159end:+11079 MsG0080047985.01.T01:CDS
GGATACTGTTACAACGAGCT+TGG 0.498290 contig159end:-10579 MsG0080047985.01.T01:intergenic
CTTCTGGCCGGAATATCGTC+CGG 0.500883 contig159end:-10746 MsG0080047985.01.T01:intergenic
GTCGGCGAGGGCAACGGTGT+CGG 0.504480 contig159end:-10321 MsG0080047985.01.T01:intergenic
GGTGGTGGCAATGGCACCTA+TGG 0.505080 contig159end:-10501 MsG0080047985.01.T01:intergenic
AGTAAGTCTTCGAGTTCAGC+AGG 0.510884 contig159end:-12856 MsG0080047985.01.T01:intergenic
GACTACAGTTGTTTGATCGC+AGG 0.515182 contig159end:+10710 MsG0080047985.01.T01:CDS
AGGTCTCCTGATGCCAAAGC+TGG 0.516200 contig159end:+12993 MsG0080047985.01.T01:intron
ACGATGGCCAGGAAGCAGAC+GGG 0.518741 contig159end:-10476 MsG0080047985.01.T01:intergenic
TTCTGGCCGGAATATCGTCC+GGG 0.521017 contig159end:-10745 MsG0080047985.01.T01:intergenic
TCGCTGAAGCAGCTCGCCGG+TGG 0.528672 contig159end:+11140 MsG0080047985.01.T01:CDS
AGGACTGCAGGTGGTGGCAA+TGG 0.529649 contig159end:-10510 MsG0080047985.01.T01:intergenic
CCCCGGTTTGGTTGTCGGCG+AGG 0.531868 contig159end:-10334 MsG0080047985.01.T01:intergenic
GTTTGTTGCTCCGCCAGTGA+TGG 0.535248 contig159end:+11070 MsG0080047985.01.T01:CDS
TCGTCGCTGAAGCAGCTCGC+CGG 0.540204 contig159end:+11137 MsG0080047985.01.T01:CDS
CGATGGCCAGGAAGCAGACG+GGG 0.541735 contig159end:-10475 MsG0080047985.01.T01:intergenic
TGATTTGGAGAAGACTTTGG+CGG 0.542218 contig159end:+11019 MsG0080047985.01.T01:CDS
GCTGGTCAAGCGGCGTGAGG+TGG 0.543332 contig159end:+11097 MsG0080047985.01.T01:CDS
TCCTGATGCCAAAGCTGGCG+AGG 0.543786 contig159end:+12998 MsG0080047985.01.T01:three_prime_UTR
GACATCTGCAGAGCCTTCCA+AGG 0.548064 contig159end:-15106 MsG0080047985.01.T01:intergenic
ACTGAAGGTTAAGGATTCCC+CGG 0.549060 contig159end:-10351 MsG0080047985.01.T01:intergenic
GACGGTGTATAAAGGACTGC+AGG 0.549658 contig159end:-10522 MsG0080047985.01.T01:intergenic
TTCCTGGCCATCGTCGCCAT+AGG 0.550371 contig159end:+10485 MsG0080047985.01.T01:CDS
ATTTCCCCTAATTGATTCGG+TGG 0.554045 contig159end:-12327 MsG0080047985.01.T01:intergenic
GAAGCAGACGGGGAAACGTA+TGG 0.556017 contig159end:-10465 MsG0080047985.01.T01:intergenic
TGCGAAATGGTACTTCTGGC+CGG 0.560904 contig159end:-10758 MsG0080047985.01.T01:intergenic
TAATAAATTAGTGCCTTGGA+AGG 0.562627 contig159end:+15093 MsG0080047985.01.T01:three_prime_UTR
GACGATGGCCAGGAAGCAGA+CGG 0.566591 contig159end:-10477 MsG0080047985.01.T01:intergenic
ACTACAGTTGTTTGATCGCA+GGG 0.567035 contig159end:+10711 MsG0080047985.01.T01:CDS
AAACAGACCATTAATGATCA+GGG 0.568415 contig159end:+12571 MsG0080047985.01.T01:CDS
AATGGCACCTATGGCGACGA+TGG 0.570687 contig159end:-10492 MsG0080047985.01.T01:intergenic
CAAATCAAATCTACCCGCCA+TGG 0.574751 contig159end:-11003 MsG0080047985.01.T01:intergenic
TCCTGAAATTTCTGATGCTG+GGG 0.576358 contig159end:+12887 MsG0080047985.01.T01:three_prime_UTR
TGAGCGAACAACAAAAGCAC+TGG 0.576674 contig159end:-13023 MsG0080047985.01.T01:intergenic
TTGTTTGGTGAGTTCAGAGA+CGG 0.576958 contig159end:-10540 MsG0080047985.01.T01:intergenic
GTATAAAGGACTGCAGGTGG+TGG 0.580445 contig159end:-10516 MsG0080047985.01.T01:intergenic
ACCAGCTCCACCATCACTGG+CGG 0.582883 contig159end:-11080 MsG0080047985.01.T01:intergenic
CGAGGACCTGTTATGATGCA+AGG 0.582930 contig159end:+12357 MsG0080047985.01.T01:CDS
CAGTTGAACCTGAATTCGAA+AGG 0.584458 contig159end:-12245 MsG0080047985.01.T01:intergenic
TCCGAGACTGAGCAGAGAGT+CGG 0.584686 contig159end:-10402 MsG0080047985.01.T01:intergenic
GGAGCTGGTCAAGCGGCGTG+AGG 0.585465 contig159end:+11094 MsG0080047985.01.T01:CDS
AAGGATTTCGAGTTGACTGA+AGG 0.585941 contig159end:-10366 MsG0080047985.01.T01:intergenic
CTTTCTTAAAATCTTTCCCG+TGG 0.586694 contig159end:-15031 MsG0080047985.01.T01:intergenic
TTGCACCATACAAAAGGTTG+CGG 0.587147 contig159end:+14976 MsG0080047985.01.T01:three_prime_UTR
AGTCGGAGATGTTGGAGACA+AGG 0.588232 contig159end:-10385 MsG0080047985.01.T01:intergenic
TGAACCTGAATTCGAAAGGA+AGG 0.588263 contig159end:-12241 MsG0080047985.01.T01:intergenic
TTTGGAGAAGACTTTGGCGG+CGG 0.592605 contig159end:+11022 MsG0080047985.01.T01:CDS
AGGGAGTGATGTTGACTCAC+CGG 0.594239 contig159end:+10831 MsG0080047985.01.T01:CDS
ACCTCCTCACTGTCACGGCA+GGG 0.594799 contig159end:-15140 MsG0080047985.01.T01:intergenic
GTTAAGATATGGTGTTACCC+AGG 0.594878 contig159end:+15189 MsG0080047985.01.T01:three_prime_UTR
AAAGAGTTGATCAAGTGCAA+CGG 0.595964 contig159end:+12658 MsG0080047985.01.T01:three_prime_UTR
TGTTGCTCCGCCAGTGATGG+TGG 0.596124 contig159end:+11073 MsG0080047985.01.T01:CDS
AGCAACGGCGATAGCAGGAG+TGG 0.600166 contig159end:+10862 MsG0080047985.01.T01:CDS
TTTCTTAAAATCTTTCCCGT+GGG 0.601674 contig159end:-15030 MsG0080047985.01.T01:intergenic
TTTCGAATTCAGGTTCAACT+GGG 0.602110 contig159end:+12247 MsG0080047985.01.T01:CDS
TCTGTATTCTTCAGGCACCA+CGG 0.602344 contig159end:+10799 MsG0080047985.01.T01:CDS
GCAGCTGAGGAGAGGGAACA+CGG 0.604601 contig159end:+10974 MsG0080047985.01.T01:intron
AGACCATTAATGATCAGGGT+TGG 0.605610 contig159end:+12575 MsG0080047985.01.T01:CDS
TGCATCAAATCTTTCCCAAG+AGG 0.606362 contig159end:-11170 MsG0080047985.01.T01:intergenic
TTGTACACGCAGCTGAGGAG+AGG 0.607173 contig159end:+10966 MsG0080047985.01.T01:intron
CTCAGTCTCGGAATCAAACG+AGG 0.608275 contig159end:+10413 MsG0080047985.01.T01:CDS
TGTACACGCAGCTGAGGAGA+GGG 0.608755 contig159end:+10967 MsG0080047985.01.T01:intron
GGCACCACGGGGAAAAGTAA+GGG 0.608988 contig159end:+10812 MsG0080047985.01.T01:CDS
CGCAGGGTACTACATGTGCC+CGG 0.613429 contig159end:+10727 MsG0080047985.01.T01:CDS
AAAAGGACAACTATTTGTCG+TGG 0.616636 contig159end:+12628 MsG0080047985.01.T01:three_prime_UTR
ACTTGTTCGACGCAATGATG+GGG 0.618265 contig159end:-10670 MsG0080047985.01.T01:intergenic
TGATGGTGGAGCTGGTCAAG+CGG 0.620311 contig159end:+11087 MsG0080047985.01.T01:CDS
AGAAGATTCCAAAGTCCCCA+CGG 0.624611 contig159end:+15014 MsG0080047985.01.T01:three_prime_UTR
GAAGATTCCAAAGTCCCCAC+GGG 0.629912 contig159end:+15015 MsG0080047985.01.T01:three_prime_UTR
AAGCGGCGTGAGGTGGTGAG+CGG 0.631498 contig159end:+11104 MsG0080047985.01.T01:CDS
TAGAAAACGACAGTACTCCT+GGG 0.633157 contig159end:-15206 MsG0080047985.01.T01:intergenic
AACGGCGATAGCAGGAGTGG+CGG 0.636445 contig159end:+10865 MsG0080047985.01.T01:CDS
TTCTTAAAATCTTTCCCGTG+GGG 0.637194 contig159end:-15029 MsG0080047985.01.T01:intergenic
TGTGTGACTACAGTTAACAA+TGG 0.638531 contig159end:+15163 MsG0080047985.01.T01:three_prime_UTR
GAACACGGTGGTGTCCATGG+CGG 0.655795 contig159end:+10989 MsG0080047985.01.T01:CDS
TCACCGGAACTTCATAGCAA+CGG 0.663060 contig159end:+10847 MsG0080047985.01.T01:CDS
TACCATTTCGCAATCCGACG+TGG 0.668972 contig159end:+10769 MsG0080047985.01.T01:CDS
ACACAACCTCCTCACTGTCA+CGG 0.673670 contig159end:-15145 MsG0080047985.01.T01:intergenic
TCCCTGCCGTGACAGTGAGG+AGG 0.679216 contig159end:+15139 MsG0080047985.01.T01:three_prime_UTR
TGGTCCCTGCCGTGACAGTG+AGG 0.684445 contig159end:+15136 MsG0080047985.01.T01:three_prime_UTR
TTAGGGGAAATTTGGCTACG+AGG 0.686700 contig159end:+12339 MsG0080047985.01.T01:CDS
GGTGTATAAAGGACTGCAGG+TGG 0.696069 contig159end:-10519 MsG0080047985.01.T01:intergenic
CCTCGCCGACAACCAAACCG+GGG 0.701180 contig159end:+10334 MsG0080047985.01.T01:CDS
CATTTCGCAATCCGACGTGG+CGG 0.702066 contig159end:+10772 MsG0080047985.01.T01:CDS
TGTATTCTTCAGGCACCACG+GGG 0.712806 contig159end:+10801 MsG0080047985.01.T01:CDS
CCTTCCACCGAATCAATTAG+GGG 0.722238 contig159end:+12323 MsG0080047985.01.T01:CDS
ATACAGAATCACCGCCACGT+CGG 0.751442 contig159end:-10783 MsG0080047985.01.T01:intergenic
GCTGAGGAGAGGGAACACGG+TGG 0.809300 contig159end:+10977 MsG0080047985.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAAAATATTTTTTTTTA+GGG + contig159end:14036-14055 MsG0080047985.01.T01:intron 0.0%
!!! TAAAAAAAAATATTTTTTAT+AGG - contig159end:14036-14055 MsG0080047985.01.T01:intergenic 0.0%
!!! TATAAAAAATATTTTTTTTT+AGG + contig159end:14035-14054 MsG0080047985.01.T01:intron 0.0%
!! TATAAACAAGAATTAAAATA+TGG + contig159end:13366-13385 MsG0080047985.01.T01:intron 10.0%
!! TTTGTATAAAATAATTACTT+TGG + contig159end:13117-13136 MsG0080047985.01.T01:intron 10.0%
!!! AAATCTAATATTAAAGTTTT+GGG + contig159end:14117-14136 MsG0080047985.01.T01:intron 10.0%
!!! TTTTCTTTAAAAAAAATTCT+TGG + contig159end:11568-11587 MsG0080047985.01.T01:intron 10.0%
!!! AAAAAAATATGTGATTAGTT+TGG - contig159end:14787-14806 MsG0080047985.01.T01:intergenic 15.0%
!!! AAAAAATGTGAATTTAGTTT+TGG + contig159end:13267-13286 MsG0080047985.01.T01:intron 15.0%
!!! AAAATATTTTTTTTTAGGGT+TGG + contig159end:14040-14059 MsG0080047985.01.T01:intron 15.0%
!!! AAATATTTTTTTTTAGGGTT+GGG + contig159end:14041-14060 MsG0080047985.01.T01:intron 15.0%
!!! ATATCATTCACTTTTTAATT+AGG - contig159end:13467-13486 MsG0080047985.01.T01:intergenic 15.0%
!!! ATCAAATGTGTTTATTTTTT+TGG - contig159end:11549-11568 MsG0080047985.01.T01:intergenic 15.0%
!!! ATCACATATTTTTTTATCTT+AGG + contig159end:14792-14811 MsG0080047985.01.T01:intron 15.0%
!!! ATCATATGTGATTTTTAATT+TGG - contig159end:14249-14268 MsG0080047985.01.T01:intergenic 15.0%
!!! ATCTTATATAACATTTTTTC+AGG + contig159end:12523-12542 MsG0080047985.01.T01:intron 15.0%
!!! CAAATCTAATATTAAAGTTT+TGG + contig159end:14116-14135 MsG0080047985.01.T01:intron 15.0%
!!! TCATATGTGATTTTTAATTT+GGG - contig159end:14248-14267 MsG0080047985.01.T01:intergenic 15.0%
!!! TCTGAATTAATGTTTTATAT+TGG + contig159end:11990-12009 MsG0080047985.01.T01:intron 15.0%
!! AAGTTGTAACAATAAAGTAA+AGG - contig159end:13332-13351 MsG0080047985.01.T01:intergenic 20.0%
!! AATGATAAAACTAATCAAGA+TGG + contig159end:13161-13180 MsG0080047985.01.T01:intron 20.0%
!! AGTTGTAACAATAAAGTAAA+GGG - contig159end:13331-13350 MsG0080047985.01.T01:intergenic 20.0%
!! CTAGATAAAAATATGACTTA+CGG - contig159end:12918-12937 MsG0080047985.01.T01:intergenic 20.0%
!! GTTTATCATCCATAAAATTT+AGG + contig159end:11931-11950 MsG0080047985.01.T01:intron 20.0%
!! TGAAGAATAAACTAATCAAT+AGG - contig159end:14950-14969 MsG0080047985.01.T01:intergenic 20.0%
!!! AATATTTTTTTTTAGGGTTG+GGG + contig159end:14042-14061 MsG0080047985.01.T01:intron 20.0%
!!! ATTTAGTGTCCTAAATTTTA+TGG - contig159end:11943-11962 MsG0080047985.01.T01:intergenic 20.0%
!!! TGAAAATGAAATTTTAACGT+TGG + contig159end:14594-14613 MsG0080047985.01.T01:intron 20.0%
!!! TTTATATTGGAAGCATTATA+TGG + contig159end:12003-12022 MsG0080047985.01.T01:intron 20.0%
!!! TTTTCTATGACAATATTGTT+TGG - contig159end:14895-14914 MsG0080047985.01.T01:intergenic 20.0%
!!! TTTTGAGATCAAAATTTTGA+TGG - contig159end:13398-13417 MsG0080047985.01.T01:intergenic 20.0%
! AACATCTTCTAACATAGAAT+TGG - contig159end:13745-13764 MsG0080047985.01.T01:intergenic 25.0%
! AAGAAAGAAGTTATATCCAA+AGG - contig159end:13215-13234 MsG0080047985.01.T01:intergenic 25.0%
! AAGCTAACACAAAATCATAT+AGG - contig159end:12721-12740 MsG0080047985.01.T01:intergenic 25.0%
! AATATGGATGATCTCATATA+GGG + contig159end:14181-14200 MsG0080047985.01.T01:intron 25.0%
! AATCAAGATGGTCTAAAAAA+TGG + contig159end:13173-13192 MsG0080047985.01.T01:intron 25.0%
! AATTTAATGACTTACTGAAG+AGG + contig159end:14515-14534 MsG0080047985.01.T01:intron 25.0%
! AGCTAACACAAAATCATATA+GGG - contig159end:12720-12739 MsG0080047985.01.T01:intergenic 25.0%
! AGTGAAAAACGATAATTAGA+TGG - contig159end:13573-13592 MsG0080047985.01.T01:intergenic 25.0%
! ATATGAGATCATCCATATTA+AGG - contig159end:14180-14199 MsG0080047985.01.T01:intergenic 25.0%
! ATGTTTGCAAACTAACAATT+TGG - contig159end:12296-12315 MsG0080047985.01.T01:intergenic 25.0%
! ATTTAATGACTTACTGAAGA+GGG + contig159end:14516-14535 MsG0080047985.01.T01:intron 25.0%
! ATTTGCGTATTGAATATGTT+CGG + contig159end:11633-11652 MsG0080047985.01.T01:intron 25.0%
! CTAAATGACAAATCATTGAA+AGG + contig159end:11909-11928 MsG0080047985.01.T01:intron 25.0%
! CTAGTACTCAAAAATTCAAT+TGG + contig159end:14353-14372 MsG0080047985.01.T01:intron 25.0%
! GACACTAAATTATCAAACTT+AGG + contig159end:11953-11972 MsG0080047985.01.T01:intron 25.0%
! GATTAAGAATGTTTGTAGTA+CGG - contig159end:14853-14872 MsG0080047985.01.T01:intergenic 25.0%
! GTTATAATAAATTAGTGCCT+TGG + contig159end:15089-15108 MsG0080047985.01.T01:three_prime_UTR 25.0%
! TAATATGGATGATCTCATAT+AGG + contig159end:14180-14199 MsG0080047985.01.T01:intron 25.0%
! TACGAATACTGAATTACAAA+AGG + contig159end:13873-13892 MsG0080047985.01.T01:intron 25.0%
! TAGAAAATGAAAGAGTTTGA+AGG + contig159end:14908-14927 MsG0080047985.01.T01:intron 25.0%
! TGTTTGCAAACTAACAATTT+GGG - contig159end:12295-12314 MsG0080047985.01.T01:intergenic 25.0%
! TTAGTTTCATGCAAACTAAT+AGG - contig159end:12486-12505 MsG0080047985.01.T01:intergenic 25.0%
! TTCAAAATTGTTGAAGAGTT+CGG - contig159end:10603-10622 MsG0080047985.01.T01:intergenic 25.0%
!! AAACAAAGAGTCATATTTTG+TGG + contig159end:12774-12793 MsG0080047985.01.T01:intron 25.0%
!! CTCAAACTTTTCTTTTTGAA+GGG + contig159end:13497-13516 MsG0080047985.01.T01:intron 25.0%
!! TTCTTTTCATGCTGTTAATT+TGG + contig159end:14545-14564 MsG0080047985.01.T01:intron 25.0%
!! TTTTAGACTTTCAGAACAAA+TGG - contig159end:11879-11898 MsG0080047985.01.T01:intergenic 25.0%
!!! AACAATGGTTTGTTAAGATA+TGG + contig159end:15178-15197 MsG0080047985.01.T01:three_prime_UTR 25.0%
!!! AATTTTGAAGGATTGAACTT+CGG + contig159end:10614-10633 MsG0080047985.01.T01:CDS 25.0%
!!! ATGTGATTTTTAATTTGGGT+TGG - contig159end:14244-14263 MsG0080047985.01.T01:intergenic 25.0%
!!! ATTTTTAATTTGGGTTGGTT+CGG - contig159end:14239-14258 MsG0080047985.01.T01:intergenic 25.0%
!!! CAATTGAATTTTTGAGTACT+AGG - contig159end:14355-14374 MsG0080047985.01.T01:intergenic 25.0%
!!! GTGATTGATTTTCCTTAATA+TGG + contig159end:14165-14184 MsG0080047985.01.T01:intron 25.0%
!!! TAAAGTTTTGGGTAAAGATA+GGG + contig159end:14128-14147 MsG0080047985.01.T01:intron 25.0%
!!! TTAAAGTTTTGGGTAAAGAT+AGG + contig159end:14127-14146 MsG0080047985.01.T01:intron 25.0%
!!! TTGAATCGCTTTCTTTTTTT+TGG - contig159end:15264-15283 MsG0080047985.01.T01:intergenic 25.0%
AAAACAGACCATTAATGATC+AGG + contig159end:12570-12589 MsG0080047985.01.T01:CDS 30.0%
AAACAGACCATTAATGATCA+GGG + contig159end:12571-12590 MsG0080047985.01.T01:CDS 30.0%
AAATGAAAGAGTTTGAAGGT+TGG + contig159end:14912-14931 MsG0080047985.01.T01:intron 30.0%
AACAACTTCGTATCAATATG+AGG + contig159end:11827-11846 MsG0080047985.01.T01:intron 30.0%
ACCATACACATTTCGTTATT+AGG + contig159end:12828-12847 MsG0080047985.01.T01:intron 30.0%
ACCTAATAACGAAATGTGTA+TGG - contig159end:12832-12851 MsG0080047985.01.T01:intergenic 30.0%
ACCTGAATGATTTCAATCTT+GGG - contig159end:11215-11234 MsG0080047985.01.T01:intergenic 30.0%
ACTTGTTTGTGATATGGTAT+GGG + contig159end:12147-12166 MsG0080047985.01.T01:intron 30.0%
ATACACATTTCGTTATTAGG+TGG + contig159end:12831-12850 MsG0080047985.01.T01:intron 30.0%
ATAGTGTAAACATGCATAAG+AGG - contig159end:12959-12978 MsG0080047985.01.T01:intergenic 30.0%
ATATGGATGATCTCATATAG+GGG + contig159end:14182-14201 MsG0080047985.01.T01:intron 30.0%
CAAATTTCCCCTAATTGATT+CGG - contig159end:12333-12352 MsG0080047985.01.T01:intergenic 30.0%
CACTATTTATTTACCATCTC+AGG + contig159end:12973-12992 MsG0080047985.01.T01:intron 30.0%
CCTTCAAAAAGAAAAGTTTG+AGG - contig159end:13499-13518 MsG0080047985.01.T01:intergenic 30.0%
CGCTCATGTAAATTTATGTT+TGG - contig159end:11420-11439 MsG0080047985.01.T01:intergenic 30.0%
GAAATCATTCAGGTAAAGAA+AGG + contig159end:11221-11240 MsG0080047985.01.T01:intron 30.0%
GACAATATTGTTTGGTTATG+AGG - contig159end:14887-14906 MsG0080047985.01.T01:intergenic 30.0%
TAATAAATTAGTGCCTTGGA+AGG + contig159end:15093-15112 MsG0080047985.01.T01:three_prime_UTR 30.0%
TACCTGAATGATTTCAATCT+TGG - contig159end:11216-11235 MsG0080047985.01.T01:intergenic 30.0%
TACGCAAATTATCAAAAACC+TGG - contig159end:11622-11641 MsG0080047985.01.T01:intergenic 30.0%
TATGTTAGAAGATGTTACCA+TGG + contig159end:13749-13768 MsG0080047985.01.T01:intron 30.0%
TCAAGAATTTGTAGCAAAAG+AGG + contig159end:13073-13092 MsG0080047985.01.T01:three_prime_UTR 30.0%
TCACAAACAAGTCATTACAT+AGG - contig159end:12139-12158 MsG0080047985.01.T01:intergenic 30.0%
TCTTGCATAACGAAAAAATC+TGG + contig159end:11723-11742 MsG0080047985.01.T01:intron 30.0%
TGGTCTAAAAAATGGTTTCA+AGG + contig159end:13181-13200 MsG0080047985.01.T01:intron 30.0%
TTAGCTTCAAATACTTTCTC+TGG + contig159end:12734-12753 MsG0080047985.01.T01:intron 30.0%
TTTCTTAAAATCTTTCCCGT+GGG - contig159end:15033-15052 MsG0080047985.01.T01:intergenic 30.0%
! CCTCAAACTTTTCTTTTTGA+AGG + contig159end:13496-13515 MsG0080047985.01.T01:intron 30.0%
! CCTTCTTTTTGGATTTTCAA+AGG - contig159end:12219-12238 MsG0080047985.01.T01:intergenic 30.0%
! CCTTTGAAAATCCAAAAAGA+AGG + contig159end:12216-12235 MsG0080047985.01.T01:CDS 30.0%
! GAACTCTTCAACAATTTTGA+AGG + contig159end:10602-10621 MsG0080047985.01.T01:CDS 30.0%
! GGGAAACAGTTTTCTTATAA+AGG - contig159end:12700-12719 MsG0080047985.01.T01:intergenic 30.0%
! GTTAATTTGGTCTATGTTGA+TGG + contig159end:14558-14577 MsG0080047985.01.T01:intron 30.0%
!! ATCTTGGATTTTGACGAAAA+AGG + contig159end:12611-12630 MsG0080047985.01.T01:exon 30.0%
!! ATTTGATTTGGAGAAGACTT+TGG + contig159end:11016-11035 MsG0080047985.01.T01:CDS 30.0%
!! CTTTCAGAACAAATGGATTA+AGG - contig159end:11872-11891 MsG0080047985.01.T01:intergenic 30.0%
!! GATTAGTTTATTCTTCATGC+AGG + contig159end:14953-14972 MsG0080047985.01.T01:intron 30.0%
!! GTAATGACTTGTTTGTGATA+TGG + contig159end:12141-12160 MsG0080047985.01.T01:intron 30.0%
!! GTTTGTAGTTTTTGTTGGTT+TGG - contig159end:14217-14236 MsG0080047985.01.T01:intergenic 30.0%
!! TTTTGAGTCTTCGATTTGTT+TGG - contig159end:10558-10577 MsG0080047985.01.T01:intergenic 30.0%
!!! ACGGTTTAGTTTGGTTTTTA+AGG - contig159end:14834-14853 MsG0080047985.01.T01:intergenic 30.0%
!!! GAATTTTTGAGTACTAGGTT+AGG - contig159end:14350-14369 MsG0080047985.01.T01:intergenic 30.0%
!!! TAGTTTTTGTTGGTTTGGTT+TGG - contig159end:14212-14231 MsG0080047985.01.T01:intergenic 30.0%
AAAAATCTGGTTGAAAGAGG+AGG + contig159end:11736-11755 MsG0080047985.01.T01:intron 35.0%
AAAAGGACAACTATTTGTCG+TGG + contig159end:12628-12647 MsG0080047985.01.T01:three_prime_UTR 35.0%
AAACAAAACCCACATCTATC+AGG - contig159end:13834-13853 MsG0080047985.01.T01:intergenic 35.0%
AAATACTTTCTCTGGTCTCT+CGG + contig159end:12742-12761 MsG0080047985.01.T01:intron 35.0%
AACCTTTGACTACATGCTTA+AGG - contig159end:11692-11711 MsG0080047985.01.T01:intergenic 35.0%
AATTGTATAGTGTGCTCTAG+TGG - contig159end:13951-13970 MsG0080047985.01.T01:intergenic 35.0%
AGAAACTTGTGGAACACATA+AGG - contig159end:11765-11784 MsG0080047985.01.T01:intergenic 35.0%
AGAGATTGTTGTGACATATG+AGG + contig159end:13627-13646 MsG0080047985.01.T01:intron 35.0%
AGATAAGATGACTATGTGTG+AGG - contig159end:13530-13549 MsG0080047985.01.T01:intergenic 35.0%
AGATTGTTGTGACATATGAG+GGG + contig159end:13629-13648 MsG0080047985.01.T01:intron 35.0%
AGTAGAAGTTCCATATTCGA+TGG + contig159end:13652-13671 MsG0080047985.01.T01:intron 35.0%
ATCCTGAAATTTCTGATGCT+GGG + contig159end:12886-12905 MsG0080047985.01.T01:three_prime_UTR 35.0%
ATCTTACCTTGCATCATAAC+AGG - contig159end:12366-12385 MsG0080047985.01.T01:intergenic 35.0%
CGAAAAAATCTGGTTGAAAG+AGG + contig159end:11733-11752 MsG0080047985.01.T01:intron 35.0%
CGAATCAATTAGGGGAAATT+TGG + contig159end:12331-12350 MsG0080047985.01.T01:CDS 35.0%
CGTATTGAATATGTTCGGAA+TGG + contig159end:11638-11657 MsG0080047985.01.T01:intron 35.0%
CTTGTTTGTGATATGGTATG+GGG + contig159end:12148-12167 MsG0080047985.01.T01:intron 35.0%
CTTTCTTAAAATCTTTCCCG+TGG - contig159end:15034-15053 MsG0080047985.01.T01:intergenic 35.0%
GAAGAATGTGTTCCTTTGTT+TGG + contig159end:10910-10929 MsG0080047985.01.T01:intron 35.0%
GAGATTGTTGTGACATATGA+GGG + contig159end:13628-13647 MsG0080047985.01.T01:intron 35.0%
GCTAAGTTTCTTCAATGCTT+TGG + contig159end:14404-14423 MsG0080047985.01.T01:intron 35.0%
GTTCCAAATTATCCCTTTGA+CGG - contig159end:11463-11482 MsG0080047985.01.T01:intergenic 35.0%
GTTTGTAGTACGGTTTAGTT+TGG - contig159end:14843-14862 MsG0080047985.01.T01:intergenic 35.0%
TAGATTTGAGTAATCTCCAG+TGG - contig159end:14104-14123 MsG0080047985.01.T01:intergenic 35.0%
TGTGTGACTACAGTTAACAA+TGG + contig159end:15163-15182 MsG0080047985.01.T01:three_prime_UTR 35.0%
TTCCAAATTATCCCTTTGAC+GGG - contig159end:11462-11481 MsG0080047985.01.T01:intergenic 35.0%
TTCTTAAAATCTTTCCCGTG+GGG - contig159end:15032-15051 MsG0080047985.01.T01:intergenic 35.0%
TTGGCGAGATTCATTACATT+GGG - contig159end:15245-15264 MsG0080047985.01.T01:intergenic 35.0%
TTTGGCGAGATTCATTACAT+TGG - contig159end:15246-15265 MsG0080047985.01.T01:intergenic 35.0%
! AAAGAGTTGATCAAGTGCAA+CGG + contig159end:12658-12677 MsG0080047985.01.T01:three_prime_UTR 35.0%
! ACAATTTGGGATTCTACACT+TGG - contig159end:12282-12301 MsG0080047985.01.T01:intergenic 35.0%
! ACTTTTATATTGCTCGACGA+TGG + contig159end:10641-10660 MsG0080047985.01.T01:CDS 35.0%
! GACTTGTTTGTGATATGGTA+TGG + contig159end:12146-12165 MsG0080047985.01.T01:intron 35.0%
! TATGTTGATGGATACATCGT+TGG + contig159end:14570-14589 MsG0080047985.01.T01:intron 35.0%
! TGTTGGATTGTTGCAGTTTT+TGG - contig159end:14710-14729 MsG0080047985.01.T01:intergenic 35.0%
! TTTCGAATTCAGGTTCAACT+GGG + contig159end:12247-12266 MsG0080047985.01.T01:CDS 35.0%
!! CACGGGAAAGATTTTAAGAA+AGG + contig159end:15032-15051 MsG0080047985.01.T01:three_prime_UTR 35.0%
!! GATCACTTTTCCATCGAATA+TGG - contig159end:13665-13684 MsG0080047985.01.T01:intergenic 35.0%
!! GTTCGGTTTGTAGTTTTTGT+TGG - contig159end:14222-14241 MsG0080047985.01.T01:intergenic 35.0%
!!! ATTTTTTTTTAGGGTTGGGG+TGG + contig159end:14045-14064 MsG0080047985.01.T01:intron 35.0%
!!! TTTTTTTTTAGGGTTGGGGT+GGG + contig159end:14046-14065 MsG0080047985.01.T01:intron 35.0%
AATCTCCGTTGAGAAACTTG+TGG - contig159end:11776-11795 MsG0080047985.01.T01:intergenic 40.0%
ACATCTATCAGGATTCGAAC+CGG - contig159end:13823-13842 MsG0080047985.01.T01:intergenic 40.0%
ACTACAGTTGTTTGATCGCA+GGG + contig159end:10711-10730 MsG0080047985.01.T01:CDS 40.0%
AGACCATTAATGATCAGGGT+TGG + contig159end:12575-12594 MsG0080047985.01.T01:CDS 40.0%
AGATGCAAACTACATCATGC+AGG + contig159end:12040-12059 MsG0080047985.01.T01:intron 40.0%
AGTTCAGAGACGGTGTATAA+AGG - contig159end:10533-10552 MsG0080047985.01.T01:intergenic 40.0%
ATAAGTGAGATGACCAGTGA+CGG + contig159end:13696-13715 MsG0080047985.01.T01:intron 40.0%
ATTTGAGTAATCTCCAGTGG+CGG - contig159end:14101-14120 MsG0080047985.01.T01:intergenic 40.0%
CAACCAAACCAATGTGGTTT+GGG - contig159end:14734-14753 MsG0080047985.01.T01:intergenic 40.0%
CAGTTGAACCTGAATTCGAA+AGG - contig159end:12248-12267 MsG0080047985.01.T01:intergenic 40.0%
CATCCTGAAATTTCTGATGC+TGG + contig159end:12885-12904 MsG0080047985.01.T01:three_prime_UTR 40.0%
CTAACAGAAGGCTTACTTAC+TGG + contig159end:13913-13932 MsG0080047985.01.T01:intron 40.0%
CTCCTTAAGCATGTAGTCAA+AGG + contig159end:11687-11706 MsG0080047985.01.T01:intron 40.0%
CTCTGCAGATGTCAAAGTTA+TGG + contig159end:15116-15135 MsG0080047985.01.T01:three_prime_UTR 40.0%
CTTGTGACGTTAGAGAATTC+GGG - contig159end:11485-11504 MsG0080047985.01.T01:intergenic 40.0%
GATACTGTTACAACGAGCTT+GGG - contig159end:10581-10600 MsG0080047985.01.T01:intergenic 40.0%
GCCCAAGATTGAAATCATTC+AGG + contig159end:11211-11230 MsG0080047985.01.T01:CDS 40.0%
GCTTGTGACGTTAGAGAATT+CGG - contig159end:11486-11505 MsG0080047985.01.T01:intergenic 40.0%
GTGTTCCACAAGTTTCTCAA+CGG + contig159end:11768-11787 MsG0080047985.01.T01:intron 40.0%
GTTAGAAGATGTTACCATGG+TGG + contig159end:13752-13771 MsG0080047985.01.T01:intron 40.0%
GTTCGAATCCTGATAGATGT+GGG + contig159end:13823-13842 MsG0080047985.01.T01:intron 40.0%
TAGAAAACGACAGTACTCCT+GGG - contig159end:15209-15228 MsG0080047985.01.T01:intergenic 40.0%
TATAGTGTGCTCTAGTGGTA+AGG - contig159end:13946-13965 MsG0080047985.01.T01:intergenic 40.0%
TCCTGAAATTTCTGATGCTG+GGG + contig159end:12887-12906 MsG0080047985.01.T01:three_prime_UTR 40.0%
TGAACCTGAATTCGAAAGGA+AGG - contig159end:12244-12263 MsG0080047985.01.T01:intergenic 40.0%
TGATATGGTATGGGGTAATG+TGG + contig159end:12156-12175 MsG0080047985.01.T01:intron 40.0%
TGCATCAAATCTTTCCCAAG+AGG - contig159end:11173-11192 MsG0080047985.01.T01:intergenic 40.0%
TTGCACCATACAAAAGGTTG+CGG + contig159end:14976-14995 MsG0080047985.01.T01:three_prime_UTR 40.0%
TTTCAAGGAGAAGCTACCTT+TGG + contig159end:13196-13215 MsG0080047985.01.T01:intron 40.0%
! AAAGGAAGGCTCCTTCTTTT+TGG - contig159end:12230-12249 MsG0080047985.01.T01:intergenic 40.0%
! AAGAGTTGATCAAGTGCAAC+GGG + contig159end:12659-12678 MsG0080047985.01.T01:three_prime_UTR 40.0%
! AGTCTTTTGTCAACCAAGCA+TGG + contig159end:13781-13800 MsG0080047985.01.T01:intron 40.0%
! CTTTCGAATTCAGGTTCAAC+TGG + contig159end:12246-12265 MsG0080047985.01.T01:CDS 40.0%
! GTCTTTTGTCAACCAAGCAT+GGG + contig159end:13782-13801 MsG0080047985.01.T01:intron 40.0%
! TGATTTGGAGAAGACTTTGG+CGG + contig159end:11019-11038 MsG0080047985.01.T01:CDS 40.0%
! TTGTTTGGTGAGTTCAGAGA+CGG - contig159end:10543-10562 MsG0080047985.01.T01:intergenic 40.0%
!! AAGGATTTCGAGTTGACTGA+AGG - contig159end:10369-10388 MsG0080047985.01.T01:intergenic 40.0%
!! AATTATTCTAGCTCCGTCAC+TGG - contig159end:13712-13731 MsG0080047985.01.T01:intergenic 40.0%
!! ATGGTCTGTTTTGTTGCTTC+TGG - contig159end:12562-12581 MsG0080047985.01.T01:intergenic 40.0%
!! ATTTCCCCTAATTGATTCGG+TGG - contig159end:12330-12349 MsG0080047985.01.T01:intergenic 40.0%
!! GTTAAGATATGGTGTTACCC+AGG + contig159end:15189-15208 MsG0080047985.01.T01:three_prime_UTR 40.0%
!! TCGGAATGGATTGTTCCAAA+TGG + contig159end:11652-11671 MsG0080047985.01.T01:intron 40.0%
!! TTCGAGTTGACTGAAGGTTA+AGG - contig159end:10363-10382 MsG0080047985.01.T01:intergenic 40.0%
!! TTTTGACTCAATCGCACGAT+TGG + contig159end:14287-14306 MsG0080047985.01.T01:intron 40.0%
AAAAGACTTCCTTGCCACCA+TGG - contig159end:13769-13788 MsG0080047985.01.T01:intergenic 45.0%
AACATAGAATTGGCCACCCT+GGG - contig159end:13735-13754 MsG0080047985.01.T01:intergenic 45.0%
AAGATGTTACCATGGTGGCA+AGG + contig159end:13757-13776 MsG0080047985.01.T01:intron 45.0%
ACCCCAGCATCAGAAATTTC+AGG - contig159end:12891-12910 MsG0080047985.01.T01:intergenic 45.0%
ACGGAGCTAGAATAATTCCC+AGG + contig159end:13715-13734 MsG0080047985.01.T01:intron 45.0%
ACTGAAGGTTAAGGATTCCC+CGG - contig159end:10354-10373 MsG0080047985.01.T01:intergenic 45.0%
ACTTGTTCGACGCAATGATG+GGG - contig159end:10673-10692 MsG0080047985.01.T01:intergenic 45.0%
AGAAGATTCCAAAGTCCCCA+CGG + contig159end:15014-15033 MsG0080047985.01.T01:three_prime_UTR 45.0%
AGCTAGAATAATTCCCAGGG+TGG + contig159end:13719-13738 MsG0080047985.01.T01:intron 45.0%
ATCATTGCGTCGAACAAGTC+AGG + contig159end:10674-10693 MsG0080047985.01.T01:CDS 45.0%
CAAATCAAATCTACCCGCCA+TGG - contig159end:11006-11025 MsG0080047985.01.T01:intergenic 45.0%
CCAACCAAACCAATGTGGTT+TGG - contig159end:14735-14754 MsG0080047985.01.T01:intergenic 45.0%
CCCTTCCACCGAATCAATTA+GGG + contig159end:12322-12341 MsG0080047985.01.T01:CDS 45.0%
CCTTCCACCGAATCAATTAG+GGG + contig159end:12323-12342 MsG0080047985.01.T01:CDS 45.0%
CGGAGCTAGAATAATTCCCA+GGG + contig159end:13716-13735 MsG0080047985.01.T01:intron 45.0%
CGTCCAACCCTGATCATTAA+TGG - contig159end:12581-12600 MsG0080047985.01.T01:intergenic 45.0%
CTAGAAAACGACAGTACTCC+TGG - contig159end:15210-15229 MsG0080047985.01.T01:intergenic 45.0%
GAATTACAAAAGGTCCACGC+AGG + contig159end:13883-13902 MsG0080047985.01.T01:intron 45.0%
GACCCGTCAAAGGGATAATT+TGG + contig159end:11457-11476 MsG0080047985.01.T01:intron 45.0%
GACTACAGTTGTTTGATCGC+AGG + contig159end:10710-10729 MsG0080047985.01.T01:CDS 45.0%
GCGGTGATTCTGTATTCTTC+AGG + contig159end:10791-10810 MsG0080047985.01.T01:CDS 45.0%
GGATACTGTTACAACGAGCT+TGG - contig159end:10582-10601 MsG0080047985.01.T01:intergenic 45.0%
GGATTGCGAAATGGTACTTC+TGG - contig159end:10765-10784 MsG0080047985.01.T01:intergenic 45.0%
GGTTCGAATCCTGATAGATG+TGG + contig159end:13822-13841 MsG0080047985.01.T01:intron 45.0%
GTTCCAAATGGTAAGCGCTT+AGG + contig159end:11664-11683 MsG0080047985.01.T01:intron 45.0%
GTTTACACCGCTGTATAGCA+GGG - contig159end:11810-11829 MsG0080047985.01.T01:intergenic 45.0%
TAACATAGAATTGGCCACCC+TGG - contig159end:13736-13755 MsG0080047985.01.T01:intergenic 45.0%
TATGGCATGACTGAAGCATG+TGG + contig159end:12185-12204 MsG0080047985.01.T01:intron 45.0%
TCACCGGAACTTCATAGCAA+CGG + contig159end:10847-10866 MsG0080047985.01.T01:CDS 45.0%
TCCAACAACCCAAACCACAT+TGG + contig159end:14723-14742 MsG0080047985.01.T01:intron 45.0%
TCGAACCAACCAAACCAATG+TGG - contig159end:14740-14759 MsG0080047985.01.T01:intergenic 45.0%
TCTCTAACGTCACAAGCACA+TGG + contig159end:11489-11508 MsG0080047985.01.T01:intron 45.0%
TCTGTATTCTTCAGGCACCA+CGG + contig159end:10799-10818 MsG0080047985.01.T01:CDS 45.0%
TGATATTGTACACGCAGCTG+AGG + contig159end:10961-10980 MsG0080047985.01.T01:intron 45.0%
TGCAGGTTGCACCATACAAA+AGG + contig159end:14970-14989 MsG0080047985.01.T01:intron 45.0%
TGTTTACACCGCTGTATAGC+AGG - contig159end:11811-11830 MsG0080047985.01.T01:intergenic 45.0%
TTAGGGGAAATTTGGCTACG+AGG + contig159end:12339-12358 MsG0080047985.01.T01:CDS 45.0%
! AGTAAGTCTTCGAGTTCAGC+AGG - contig159end:12859-12878 MsG0080047985.01.T01:intergenic 45.0%
! ATCAGGATTTTTACGGCGAG+GGG + contig159end:10888-10907 MsG0080047985.01.T01:CDS 45.0%
! ATTGACTCCCTGCTATACAG+CGG + contig159end:11800-11819 MsG0080047985.01.T01:intron 45.0%
! CAACCCAAACCACATTGGTT+TGG + contig159end:14728-14747 MsG0080047985.01.T01:intron 45.0%
! GACTTGTTCGACGCAATGAT+GGG - contig159end:10674-10693 MsG0080047985.01.T01:intergenic 45.0%
! GATCAGGATTTTTACGGCGA+GGG + contig159end:10887-10906 MsG0080047985.01.T01:CDS 45.0%
! TGAGCGAACAACAAAAGCAC+TGG - contig159end:13026-13045 MsG0080047985.01.T01:intergenic 45.0%
!! ACCAATGTGGTTTGGGTTGT+TGG - contig159end:14727-14746 MsG0080047985.01.T01:intergenic 45.0%
!! CATGGCGGGTAGATTTGATT+TGG + contig159end:11004-11023 MsG0080047985.01.T01:CDS 45.0%
!! CCAAACCACATTGGTTTGGT+TGG + contig159end:14732-14751 MsG0080047985.01.T01:intron 45.0%
!! CCCTAATTGATTCGGTGGAA+GGG - contig159end:12325-12344 MsG0080047985.01.T01:intergenic 45.0%
!! CCTAATTGATTCGGTGGAAG+GGG - contig159end:12324-12343 MsG0080047985.01.T01:intergenic 45.0%
!! TGACTTGTTCGACGCAATGA+TGG - contig159end:10675-10694 MsG0080047985.01.T01:intergenic 45.0%
!!! GTGGCGGATCAGGATTTTTA+CGG + contig159end:10881-10900 MsG0080047985.01.T01:CDS 45.0%
AATCTTTCCCGTGGGGACTT+TGG - contig159end:15025-15044 MsG0080047985.01.T01:intergenic 50.0%
ACACAACCTCCTCACTGTCA+CGG - contig159end:15148-15167 MsG0080047985.01.T01:intergenic 50.0%
ACGGGGAAACGTATGGAGTT+AGG - contig159end:10461-10480 MsG0080047985.01.T01:intergenic 50.0%
AGGTTAAGGATTCCCCGGTT+TGG - contig159end:10349-10368 MsG0080047985.01.T01:intergenic 50.0%
AGTCGGAGATGTTGGAGACA+AGG - contig159end:10388-10407 MsG0080047985.01.T01:intergenic 50.0%
ATACAGAATCACCGCCACGT+CGG - contig159end:10786-10805 MsG0080047985.01.T01:intergenic 50.0%
ATGCACCATGTGATGGTTGG+CGG + contig159end:10938-10957 MsG0080047985.01.T01:intron 50.0%
ATGGTATGGGGTAATGTGGC+AGG + contig159end:12160-12179 MsG0080047985.01.T01:intron 50.0%
CCAACCATCACATGGTGCAT+CGG - contig159end:10938-10957 MsG0080047985.01.T01:intergenic 50.0%
CCCCTTCCACCGAATCAATT+AGG + contig159end:12321-12340 MsG0080047985.01.T01:CDS 50.0%
CGAGGACCTGTTATGATGCA+AGG + contig159end:12357-12376 MsG0080047985.01.T01:CDS 50.0%
CTCAGTCTCGGAATCAAACG+AGG + contig159end:10413-10432 MsG0080047985.01.T01:CDS 50.0%
CTGTATTCTTCAGGCACCAC+GGG + contig159end:10800-10819 MsG0080047985.01.T01:CDS 50.0%
GAAGATTCCAAAGTCCCCAC+GGG + contig159end:15015-15034 MsG0080047985.01.T01:three_prime_UTR 50.0%
GACACAAAGGACCCGTCAAA+GGG + contig159end:11448-11467 MsG0080047985.01.T01:intron 50.0%
GACGGTGTATAAAGGACTGC+AGG - contig159end:10525-10544 MsG0080047985.01.T01:intergenic 50.0%
GAGCCTAAGCGCTTACCATT+TGG - contig159end:11670-11689 MsG0080047985.01.T01:intergenic 50.0%
GCAGGAGTCGAACTAACAGA+AGG + contig159end:13901-13920 MsG0080047985.01.T01:intron 50.0%
GGAGCCTTCCTTTCGAATTC+AGG + contig159end:12237-12256 MsG0080047985.01.T01:CDS 50.0%
GGTGTATAAAGGACTGCAGG+TGG - contig159end:10522-10541 MsG0080047985.01.T01:intergenic 50.0%
GTATAAAGGACTGCAGGTGG+TGG - contig159end:10519-10538 MsG0080047985.01.T01:intergenic 50.0%
TACCATTTCGCAATCCGACG+TGG + contig159end:10769-10788 MsG0080047985.01.T01:CDS 50.0%
TATCACCGCCAACCATCACA+TGG - contig159end:10946-10965 MsG0080047985.01.T01:intergenic 50.0%
TCGCCGTTGCTATGAAGTTC+CGG - contig159end:10853-10872 MsG0080047985.01.T01:intergenic 50.0%
TGCGAAATGGTACTTCTGGC+CGG - contig159end:10761-10780 MsG0080047985.01.T01:intergenic 50.0%
TGGTATGGGGTAATGTGGCA+GGG + contig159end:12161-12180 MsG0080047985.01.T01:intron 50.0%
TGTATTCTTCAGGCACCACG+GGG + contig159end:10801-10820 MsG0080047985.01.T01:CDS 50.0%
TTCATAGCAACGGCGATAGC+AGG + contig159end:10857-10876 MsG0080047985.01.T01:CDS 50.0%
TTTGGAGAAGACTTTGGCGG+CGG + contig159end:11022-11041 MsG0080047985.01.T01:CDS 50.0%
! ACTCGCCGCAACCTTTTGTA+TGG - contig159end:14984-15003 MsG0080047985.01.T01:intergenic 50.0%
! CTTTGACGGGTCCTTTGTGT+CGG - contig159end:11449-11468 MsG0080047985.01.T01:intergenic 50.0%
! GGATCAGGATTTTTACGGCG+AGG + contig159end:10886-10905 MsG0080047985.01.T01:CDS 50.0%
! GGCTTTGTGCGATGAGTGAT+GGG + contig159end:11589-11608 MsG0080047985.01.T01:intron 50.0%
! TTTGACGGGTCCTTTGTGTC+GGG - contig159end:11448-11467 MsG0080047985.01.T01:intergenic 50.0%
! TTTGTGCGATGAGTGATGGG+AGG + contig159end:11592-11611 MsG0080047985.01.T01:intron 50.0%
!! AGGGAGTGATGTTGACTCAC+CGG + contig159end:10831-10850 MsG0080047985.01.T01:CDS 50.0%
!! CCCCTAATTGATTCGGTGGA+AGG - contig159end:12326-12345 MsG0080047985.01.T01:intergenic 50.0%
!! TGGCTTTGTGCGATGAGTGA+TGG + contig159end:11588-11607 MsG0080047985.01.T01:intron 50.0%
AATGGCACCTATGGCGACGA+TGG - contig159end:10495-10514 MsG0080047985.01.T01:intergenic 55.0%
AGGCACCACGGGGAAAAGTA+AGG + contig159end:10811-10830 MsG0080047985.01.T01:CDS 55.0%
AGGTCTCCTGATGCCAAAGC+TGG + contig159end:12993-13012 MsG0080047985.01.T01:intron 55.0%
CATGTGCCCGGACGATATTC+CGG + contig159end:10739-10758 MsG0080047985.01.T01:CDS 55.0%
CATTTCGCAATCCGACGTGG+CGG + contig159end:10772-10791 MsG0080047985.01.T01:CDS 55.0%
CCGATGCACCATGTGATGGT+TGG + contig159end:10935-10954 MsG0080047985.01.T01:intron 55.0%
CGACACAAAGGACCCGTCAA+AGG + contig159end:11447-11466 MsG0080047985.01.T01:intron 55.0%
CTGTTAGTTCGACTCCTGCG+TGG - contig159end:13900-13919 MsG0080047985.01.T01:intergenic 55.0%
CTTCTGGCCGGAATATCGTC+CGG - contig159end:10749-10768 MsG0080047985.01.T01:intergenic 55.0%
GAAGCAGACGGGGAAACGTA+TGG - contig159end:10468-10487 MsG0080047985.01.T01:intergenic 55.0%
GACATCTGCAGAGCCTTCCA+AGG - contig159end:15109-15128 MsG0080047985.01.T01:intergenic 55.0%
GAGCAGAGAGTCGGAGATGT+TGG - contig159end:10396-10415 MsG0080047985.01.T01:intergenic 55.0%
GAGCGAATGACCCGACACAA+AGG + contig159end:11435-11454 MsG0080047985.01.T01:intron 55.0%
GATCAGGGTTGGACGCTTAC+TGG + contig159end:12586-12605 MsG0080047985.01.T01:CDS 55.0%
GGCACCACGGGGAAAAGTAA+GGG + contig159end:10812-10831 MsG0080047985.01.T01:CDS 55.0%
GGTATGGGGTAATGTGGCAG+GGG + contig159end:12162-12181 MsG0080047985.01.T01:intron 55.0%
TCCGACTCTCTGCTCAGTCT+CGG + contig159end:10401-10420 MsG0080047985.01.T01:CDS 55.0%
TCCGAGACTGAGCAGAGAGT+CGG - contig159end:10405-10424 MsG0080047985.01.T01:intergenic 55.0%
TGGACGCTTACTGGCGATCT+TGG + contig159end:12595-12614 MsG0080047985.01.T01:CDS 55.0%
TGGCATCAGGAGACCTGAGA+TGG - contig159end:12989-13008 MsG0080047985.01.T01:intergenic 55.0%
TGTACACGCAGCTGAGGAGA+GGG + contig159end:10967-10986 MsG0080047985.01.T01:intron 55.0%
TTCTGGCCGGAATATCGTCC+GGG - contig159end:10748-10767 MsG0080047985.01.T01:intergenic 55.0%
TTGACCAGCTCCACCATCAC+TGG - contig159end:11086-11105 MsG0080047985.01.T01:intergenic 55.0%
TTGTACACGCAGCTGAGGAG+AGG + contig159end:10966-10985 MsG0080047985.01.T01:intron 55.0%
! GGTGCATCGGCACCAAACAA+AGG - contig159end:10925-10944 MsG0080047985.01.T01:intergenic 55.0%
! GTTTGTTGCTCCGCCAGTGA+TGG + contig159end:11070-11089 MsG0080047985.01.T01:CDS 55.0%
! TGAGTGATGGGAGGCTATCC+AGG + contig159end:11601-11620 MsG0080047985.01.T01:intron 55.0%
!! CACTCCCTTACTTTTCCCCG+TGG - contig159end:10819-10838 MsG0080047985.01.T01:intergenic 55.0%
!! GGATTCCCCGGTTTGGTTGT+CGG - contig159end:10342-10361 MsG0080047985.01.T01:intergenic 55.0%
!! TGATGGTGGAGCTGGTCAAG+CGG + contig159end:11087-11106 MsG0080047985.01.T01:CDS 55.0%
AACACGGTGGTGTCCATGGC+GGG + contig159end:10990-11009 MsG0080047985.01.T01:CDS 60.0%
AACCTCCTCACTGTCACGGC+AGG - contig159end:15144-15163 MsG0080047985.01.T01:intergenic 60.0%
AACGGCGATAGCAGGAGTGG+CGG + contig159end:10865-10884 MsG0080047985.01.T01:CDS 60.0%
AAGCATGGGCCGACCAAGCA+TGG + contig159end:13796-13815 MsG0080047985.01.T01:intron 60.0%
ACCAGCTCCACCATCACTGG+CGG - contig159end:11083-11102 MsG0080047985.01.T01:intergenic 60.0%
ACCTCCTCACTGTCACGGCA+GGG - contig159end:15143-15162 MsG0080047985.01.T01:intergenic 60.0%
ACGATGGCCAGGAAGCAGAC+GGG - contig159end:10479-10498 MsG0080047985.01.T01:intergenic 60.0%
ACGTTTCCCCGTCTGCTTCC+TGG + contig159end:10469-10488 MsG0080047985.01.T01:CDS 60.0%
AGCAACGGCGATAGCAGGAG+TGG + contig159end:10862-10881 MsG0080047985.01.T01:CDS 60.0%
AGCATGGGCCGACCAAGCAT+GGG + contig159end:13797-13816 MsG0080047985.01.T01:intron 60.0%
AGGGAACACGGTGGTGTCCA+TGG + contig159end:10986-11005 MsG0080047985.01.T01:CDS 60.0%
ATGCTTGGTCGGCCCATGCT+TGG - contig159end:13797-13816 MsG0080047985.01.T01:intergenic 60.0%
CACTGGAACCTCGCCAGCTT+TGG - contig159end:13009-13028 MsG0080047985.01.T01:intergenic 60.0%
CGCCACGTCGGATTGCGAAA+TGG - contig159end:10774-10793 MsG0080047985.01.T01:intergenic 60.0%
GAACACGGTGGTGTCCATGG+CGG + contig159end:10989-11008 MsG0080047985.01.T01:CDS 60.0%
GACGATGGCCAGGAAGCAGA+CGG - contig159end:10480-10499 MsG0080047985.01.T01:intergenic 60.0%
GATTCGAACCGGCCCATGCT+TGG - contig159end:13812-13831 MsG0080047985.01.T01:intergenic 60.0%
GCAGCTGAGGAGAGGGAACA+CGG + contig159end:10974-10993 MsG0080047985.01.T01:intron 60.0%
GGCGGCGGTGGAGAAGTTTA+GGG + contig159end:11037-11056 MsG0080047985.01.T01:CDS 60.0%
GGGGTAATGTGGCAGGGGTA+TGG + contig159end:12167-12186 MsG0080047985.01.T01:intron 60.0%
TCCTGATGCCAAAGCTGGCG+AGG + contig159end:12998-13017 MsG0080047985.01.T01:three_prime_UTR 60.0%
TGGCGGCGGTGGAGAAGTTT+AGG + contig159end:11036-11055 MsG0080047985.01.T01:CDS 60.0%
TGTTGCTCCGCCAGTGATGG+TGG + contig159end:11073-11092 MsG0080047985.01.T01:CDS 60.0%
TTCCTGGCCATCGTCGCCAT+AGG + contig159end:10485-10504 MsG0080047985.01.T01:CDS 60.0%
TTGGTTGTCGGCGAGGGCAA+CGG - contig159end:10330-10349 MsG0080047985.01.T01:intergenic 60.0%
! ACCTCGCCAGCTTTGGCATC+AGG - contig159end:13002-13021 MsG0080047985.01.T01:intergenic 60.0%
! AGGACTGCAGGTGGTGGCAA+TGG - contig159end:10513-10532 MsG0080047985.01.T01:intergenic 60.0%
! CGCAGGGTACTACATGTGCC+CGG + contig159end:10727-10746 MsG0080047985.01.T01:CDS 60.0%
! GGTGGTGGCAATGGCACCTA+TGG - contig159end:10504-10523 MsG0080047985.01.T01:intergenic 60.0%
!! GATAGCAGGAGTGGCGGATC+AGG + contig159end:10871-10890 MsG0080047985.01.T01:CDS 60.0%
!! GGTGCCGATGCACCATGTGA+TGG + contig159end:10931-10950 MsG0080047985.01.T01:intron 60.0%
AAGCGGCGTGAGGTGGTGAG+CGG + contig159end:11104-11123 MsG0080047985.01.T01:CDS 65.0%
AGCCACTCAAGGGCCAGGGT+GGG - contig159end:14078-14097 MsG0080047985.01.T01:intergenic 65.0%
CACCTATGGCGACGATGGCC+AGG - contig159end:10490-10509 MsG0080047985.01.T01:intergenic 65.0%
CCCAAGAGGAGCAGCACCAC+CGG - contig159end:11159-11178 MsG0080047985.01.T01:intergenic 65.0%
CCCTCGCCGACAACCAAACC+GGG + contig159end:10333-10352 MsG0080047985.01.T01:CDS 65.0%
CCTCGCCGACAACCAAACCG+GGG + contig159end:10334-10353 MsG0080047985.01.T01:CDS 65.0%
CGAACCGGCCCATGCTTGGT+CGG - contig159end:13808-13827 MsG0080047985.01.T01:intergenic 65.0%
CGATGGCCAGGAAGCAGACG+GGG - contig159end:10478-10497 MsG0080047985.01.T01:intergenic 65.0%
GCCCTCGCCGACAACCAAAC+CGG + contig159end:10332-10351 MsG0080047985.01.T01:CDS 65.0%
GCTGAGGAGAGGGAACACGG+TGG + contig159end:10977-10996 MsG0080047985.01.T01:intron 65.0%
GGAGAAGACTTTGGCGGCGG+TGG + contig159end:11025-11044 MsG0080047985.01.T01:CDS 65.0%
TCCCTGCCGTGACAGTGAGG+AGG + contig159end:15139-15158 MsG0080047985.01.T01:three_prime_UTR 65.0%
TCGTCGCTGAAGCAGCTCGC+CGG + contig159end:11137-11156 MsG0080047985.01.T01:CDS 65.0%
TGGTCCCTGCCGTGACAGTG+AGG + contig159end:15136-15155 MsG0080047985.01.T01:three_prime_UTR 65.0%
! CCAGTGGCGGAGCCACTCAA+GGG - contig159end:14088-14107 MsG0080047985.01.T01:intergenic 65.0%
! TCCAGTGGCGGAGCCACTCA+AGG - contig159end:14089-14108 MsG0080047985.01.T01:intergenic 65.0%
!! CCCGGTTTGGTTGTCGGCGA+GGG - contig159end:10336-10355 MsG0080047985.01.T01:intergenic 65.0%
!! CCGGTGGTGCTGCTCCTCTT+GGG + contig159end:11156-11175 MsG0080047985.01.T01:CDS 65.0%
!! TCCGCCAGTGATGGTGGAGC+TGG + contig159end:11079-11098 MsG0080047985.01.T01:CDS 65.0%
CCCTTGAGTGGCTCCGCCAC+TGG + contig159end:14085-14104 MsG0080047985.01.T01:intron 70.0%
GACCCACCCTGGCCCTTGAG+TGG + contig159end:14073-14092 MsG0080047985.01.T01:intron 70.0%
GAGCCACTCAAGGGCCAGGG+TGG - contig159end:14079-14098 MsG0080047985.01.T01:intergenic 70.0%
GCGGAGCCACTCAAGGGCCA+GGG - contig159end:14082-14101 MsG0080047985.01.T01:intergenic 70.0%
GCTGGTCAAGCGGCGTGAGG+TGG + contig159end:11097-11116 MsG0080047985.01.T01:CDS 70.0%
GGAGCTGGTCAAGCGGCGTG+AGG + contig159end:11094-11113 MsG0080047985.01.T01:CDS 70.0%
GTCGGCGAGGGCAACGGTGT+CGG - contig159end:10324-10343 MsG0080047985.01.T01:intergenic 70.0%
TCGCTGAAGCAGCTCGCCGG+TGG + contig159end:11140-11159 MsG0080047985.01.T01:CDS 70.0%
TGGGCCGACCAAGCATGGGC+CGG + contig159end:13801-13820 MsG0080047985.01.T01:intron 70.0%
!! CCCCGGTTTGGTTGTCGGCG+AGG - contig159end:10337-10356 MsG0080047985.01.T01:intergenic 70.0%
!! GCCGGTGGTGCTGCTCCTCT+TGG + contig159end:11155-11174 MsG0080047985.01.T01:CDS 70.0%
GGCGGAGCCACTCAAGGGCC+AGG - contig159end:14083-14102 MsG0080047985.01.T01:intergenic 75.0%
GGGTGGGTCGTGACCCACCC+TGG + contig159end:14062-14081 MsG0080047985.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
contig159end gene 10317 15374 10317 ID=MsG0080047985.01;Name=MsG0080047985.01
contig159end mRNA 10317 15374 10317 ID=MsG0080047985.01.T01;Parent=MsG0080047985.01;Name=MsG0080047985.01.T01;_AED=0.24;_eAED=0.24;_QI=0|0.66|0.57|1|0.5|0.42|7|630|370
contig159end exon 10317 10916 10317 ID=MsG0080047985.01.T01:exon:21688;Parent=MsG0080047985.01.T01
contig159end exon 10978 11232 10978 ID=MsG0080047985.01.T01:exon:21689;Parent=MsG0080047985.01.T01
contig159end exon 12201 12378 12201 ID=MsG0080047985.01.T01:exon:21690;Parent=MsG0080047985.01.T01
contig159end exon 12545 12687 12545 ID=MsG0080047985.01.T01:exon:21691;Parent=MsG0080047985.01.T01
contig159end exon 12850 12916 12850 ID=MsG0080047985.01.T01:exon:21692;Parent=MsG0080047985.01.T01
contig159end exon 12995 13094 12995 ID=MsG0080047985.01.T01:exon:21693;Parent=MsG0080047985.01.T01
contig159end exon 14975 15374 14975 ID=MsG0080047985.01.T01:exon:21694;Parent=MsG0080047985.01.T01
contig159end CDS 10317 10916 10317 ID=MsG0080047985.01.T01:cds;Parent=MsG0080047985.01.T01
contig159end CDS 10978 11232 10978 ID=MsG0080047985.01.T01:cds;Parent=MsG0080047985.01.T01
contig159end CDS 12201 12378 12201 ID=MsG0080047985.01.T01:cds;Parent=MsG0080047985.01.T01
contig159end CDS 12545 12624 12545 ID=MsG0080047985.01.T01:cds;Parent=MsG0080047985.01.T01
contig159end three_prime_UTR 12625 12687 12625 ID=MsG0080047985.01.T01:three_prime_utr;Parent=MsG0080047985.01.T01
contig159end three_prime_UTR 12850 12916 12850 ID=MsG0080047985.01.T01:three_prime_utr;Parent=MsG0080047985.01.T01
contig159end three_prime_UTR 12995 13094 12995 ID=MsG0080047985.01.T01:three_prime_utr;Parent=MsG0080047985.01.T01
contig159end three_prime_UTR 14975 15374 14975 ID=MsG0080047985.01.T01:three_prime_utr;Parent=MsG0080047985.01.T01
Gene Sequence

>MsG0080047985.01.T01

ATGGCCGACACCGTTGCCCTCGCCGACAACCAAACCGGGGAATCCTTAACCTTCAGTCAACTCGAAATCCTTGTCTCCAACATCTCCGACTCTCTGCTCAGTCTCGGAATCAAACGAGGTGACGTCGTTATGCTATACGCACCTAACTCCATACGTTTCCCCGTCTGCTTCCTGGCCATCGTCGCCATAGGTGCCATTGCCACCACCTGCAGTCCTTTATACACCGTCTCTGAACTCACCAAACAAATCGAAGACTCAAAACCCAAGCTCGTTGTAACAGTATCCGAACTCTTCAACAATTTTGAAGGATTGAACTTCGGTTTAACTTTTATATTGCTCGACGATGGTTTGAGCCCCATCATTGCGTCGAACAAGTCAGGTTCTAGAGTTTTCGACTACAGTTGTTTGATCGCAGGGTACTACATGTGCCCGGACGATATTCCGGCCAGAAGTACCATTTCGCAATCCGACGTGGCGGTGATTCTGTATTCTTCAGGCACCACGGGGAAAAGTAAGGGAGTGATGTTGACTCACCGGAACTTCATAGCAACGGCGATAGCAGGAGTGGCGGATCAGGATTTTTACGGCGAGGGGAAGAATCTGAGGAGAGGGAACACGGTGGTGTCCATGGCGGGTAGATTTGATTTGGAGAAGACTTTGGCGGCGGTGGAGAAGTTTAGGGTGACGCATTTGTTTGTTGCTCCGCCAGTGATGGTGGAGCTGGTCAAGCGGCGTGAGGTGGTGAGCGGTTATGATTTGTCGTCGCTGAAGCAGCTCGCCGGTGGTGCTGCTCCTCTTGGGAAAGATTTGATGCAAGCATGTGCTGAGATTCTGCCCAAGATTGAAATCATTCAGCATGTGGACTTGTTTCCTTTGAAAATCCAAAAAGAAGGAGCCTTCCTTTCGAATTCAGGTTCAACTGGGAAACTAGTTCCAAGTGTAGAATCCCAAATTGTTAGTTTGCAAACATCGAAGCCCCTTCCACCGAATCAATTAGGGGAAATTTGGCTACGAGGACCTGTTATGATGCAAGGATACTTTAGCAATCCAGAAGCAACAAAACAGACCATTAATGATCAGGGTTGGACGCTTACTGGCGATCTTGGATTTTGA
Protein sequence

>MsG0080047985.01.T01

MADTVALADNQTGESLTFSQLEILVSNISDSLLSLGIKRGDVVMLYAPNSIRFPVCFLAIVAIGAIATTCSPLYTVSELTKQIEDSKPKLVVTVSELFNNFEGLNFGLTFILLDDGLSPIIASNKSGSRVFDYSCLIAGYYMCPDDIPARSTISQSDVAVILYSSGTTGKSKGVMLTHRNFIATAIAGVADQDFYGEGKNLRRGNTVVSMAGRFDLEKTLAAVEKFRVTHLFVAPPVMVELVKRREVVSGYDLSSLKQLAGGAAPLGKDLMQACAEILPKIEIIQHVDLFPLKIQKEGAFLSNSGSTGKLVPSVESQIVSLQTSKPLPPNQLGEIWLRGPVMMQGYFSNPEATKQTINDQGWTLTGDLGF*