Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021230.01.T01 | XP_013456385.1 | 97.534 | 365 | 9 | 0 | 16 | 380 | 67 | 431 | 0 | 736 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021230.01.T01 | Q9LN62 | 70.19 | 369 | 101 | 3 | 18 | 378 | 60 | 427 | 0 | 530 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021230.01.T01 | A0A072UM19 | 97.534 | 365 | 9 | 0 | 16 | 380 | 67 | 431 | 0.0 | 736 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047985.01 | MsG0480021230.01 | 0.808851 | 2.527998e-50 | 1.461113e-47 |
| MsG0180000028.01 | MsG0480021230.01 | 0.830605 | 2.673370e-55 | 2.830399e-52 |
| MsG0180000029.01 | MsG0480021230.01 | 0.822964 | 1.786787e-53 | 1.518071e-50 |
| MsG0180001029.01 | MsG0480021230.01 | 0.808448 | 3.082468e-50 | 1.763002e-47 |
| MsG0180001548.01 | MsG0480021230.01 | -0.806113 | 9.629088e-50 | 5.183312e-47 |
| MsG0180003505.01 | MsG0480021230.01 | 0.803524 | 3.345956e-49 | 1.685231e-46 |
| MsG0180004549.01 | MsG0480021230.01 | 0.802615 | 5.158329e-49 | 2.538220e-46 |
| MsG0180005681.01 | MsG0480021230.01 | 0.803042 | 4.210923e-49 | 2.094608e-46 |
| MsG0180006183.01 | MsG0480021230.01 | 0.824071 | 9.844910e-54 | 8.629454e-51 |
| MsG0180006195.01 | MsG0480021230.01 | 0.818339 | 2.063744e-52 | 1.540665e-49 |
| MsG0280011128.01 | MsG0480021230.01 | 0.804806 | 1.809715e-49 | 9.420662e-47 |
| MsG0380011701.01 | MsG0480021230.01 | 0.821984 | 3.018773e-53 | 2.494069e-50 |
| MsG0380012222.01 | MsG0480021230.01 | 0.818617 | 1.784822e-52 | 1.342568e-49 |
| MsG0480019817.01 | MsG0480021230.01 | 0.825331 | 4.968123e-54 | 4.514804e-51 |
| MsG0480019818.01 | MsG0480021230.01 | 0.827115 | 1.869992e-54 | 1.788284e-51 |
| MsG0480021091.01 | MsG0480021230.01 | 0.829975 | 3.810226e-55 | 3.961037e-52 |
| MsG0480021227.01 | MsG0480021230.01 | 0.818885 | 1.551472e-52 | 1.175835e-49 |
| MsG0480021230.01 | MsG0480021231.01 | 0.842232 | 2.932263e-58 | 4.417012e-55 |
| MsG0480021230.01 | MsG0580024087.01 | 0.803685 | 3.098809e-49 | 1.567087e-46 |
| MsG0480021230.01 | MsG0580026180.01 | 0.806129 | 9.557420e-50 | 5.146796e-47 |
| MsG0480021230.01 | MsG0580026521.01 | 0.820343 | 7.210063e-53 | 5.690046e-50 |
| MsG0480021230.01 | MsG0580027751.01 | 0.804823 | 1.795064e-49 | 9.348559e-47 |
| MsG0480021230.01 | MsG0580029937.01 | 0.817699 | 2.880133e-52 | 2.112509e-49 |
| MsG0480021230.01 | MsG0680031200.01 | 0.801873 | 7.331906e-49 | 3.540376e-46 |
| MsG0480021230.01 | MsG0680034238.01 | 0.824081 | 9.791521e-54 | 8.585147e-51 |
| MsG0480021230.01 | MsG0780038318.01 | 0.827077 | 1.909239e-54 | 1.823918e-51 |
| MsG0480021230.01 | MsG0780038657.01 | 0.804153 | 2.476819e-49 | 1.267740e-46 |
| MsG0480021230.01 | MsG0780039373.01 | 0.828595 | 8.237068e-55 | 8.224746e-52 |
| MsG0480021230.01 | MsG0780040716.01 | 0.844931 | 5.569513e-59 | 9.132525e-56 |
| MsG0480021230.01 | MsG0780041246.01 | 0.804064 | 2.584092e-49 | 1.319700e-46 |
| MsG0480021230.01 | MsG0780041248.01 | 0.826166 | 3.148347e-54 | 2.929808e-51 |
| MsG0480021230.01 | MsG0880043495.01 | 0.817430 | 3.311221e-52 | 2.410974e-49 |
| MsG0480021230.01 | MsG0880043688.01 | 0.816957 | 4.230182e-52 | 3.040614e-49 |
| MsG0480021230.01 | MsG0880043882.01 | 0.809167 | 2.163017e-50 | 1.260846e-47 |
| MsG0480021230.01 | MsG0880044712.01 | 0.847860 | 8.848549e-60 | 1.594055e-56 |
| MsG0480021230.01 | MsG0880045801.01 | 0.841758 | 3.912628e-58 | 5.806477e-55 |
| MsG0480021230.01 | MsG0880046829.01 | 0.815058 | 1.122618e-51 | 7.659650e-49 |
| MsG0480021230.01 | MsG0880046870.01 | 0.818409 | 1.989932e-52 | 1.488494e-49 |
| MsG0480021230.01 | MsG0880046946.01 | 0.805628 | 1.217605e-49 | 6.473446e-47 |
| MsG0480021230.01 | MsG0880047383.01 | 0.801902 | 7.232390e-49 | 3.494797e-46 |
| MsG0380015513.01 | MsG0480021230.01 | 0.829262 | 5.679058e-55 | 5.783290e-52 |
| MsG0380016490.01 | MsG0480021230.01 | 0.830428 | 2.952582e-55 | 3.109884e-52 |
| MsG0380017901.01 | MsG0480021230.01 | 0.841052 | 6.002659e-58 | 8.713958e-55 |
| MsG0480018337.01 | MsG0480021230.01 | -0.805601 | 1.233869e-49 | 6.555026e-47 |
| MsG0480018362.01 | MsG0480021230.01 | 0.815236 | 1.025362e-51 | 7.029807e-49 |
| MsG0280006579.01 | MsG0480021230.01 | 0.800137 | 1.659259e-48 | 7.667286e-46 |
| MsG0280007689.01 | MsG0480021230.01 | 0.804951 | 1.688116e-49 | 8.820481e-47 |
| MsG0280010270.01 | MsG0480021230.01 | 0.804966 | 1.676214e-49 | 8.761522e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021230.01.T01 | MTR_4g069350 | 97.534 | 365 | 9 | 0 | 16 | 380 | 67 | 431 | 0.0 | 736 |
| MsG0480021230.01.T01 | MTR_4g069420 | 86.022 | 372 | 36 | 2 | 16 | 380 | 67 | 429 | 0.0 | 651 |
| MsG0480021230.01.T01 | MTR_4g069260 | 82.973 | 370 | 55 | 2 | 16 | 378 | 67 | 435 | 0.0 | 633 |
| MsG0480021230.01.T01 | MTR_4g069390 | 87.288 | 354 | 43 | 1 | 29 | 380 | 1 | 354 | 0.0 | 630 |
| MsG0480021230.01.T01 | MTR_4g069300 | 85.596 | 361 | 45 | 1 | 25 | 378 | 76 | 436 | 0.0 | 629 |
| MsG0480021230.01.T01 | MTR_4g069430 | 81.967 | 366 | 53 | 2 | 16 | 379 | 67 | 421 | 0.0 | 586 |
| MsG0480021230.01.T01 | MTR_1g022025 | 70.652 | 368 | 100 | 2 | 18 | 378 | 61 | 427 | 0.0 | 538 |
| MsG0480021230.01.T01 | MTR_8g069400 | 28.571 | 203 | 121 | 8 | 97 | 293 | 1378 | 1562 | 1.33e-12 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021230.01.T01 | AT1G19360 | 70.190 | 369 | 101 | 3 | 18 | 378 | 60 | 427 | 0.0 | 530 |
| MsG0480021230.01.T01 | AT1G19360 | 70.190 | 369 | 101 | 3 | 18 | 378 | 60 | 427 | 0.0 | 530 |
| MsG0480021230.01.T01 | AT1G75110 | 68.937 | 367 | 106 | 2 | 19 | 378 | 62 | 427 | 0.0 | 525 |
| MsG0480021230.01.T01 | AT1G75120 | 67.867 | 361 | 110 | 2 | 18 | 378 | 48 | 402 | 3.35e-177 | 499 |
| MsG0480021230.01.T01 | AT1G70630 | 29.384 | 211 | 117 | 6 | 97 | 297 | 230 | 418 | 2.40e-16 | 80.9 |
| MsG0480021230.01.T01 | AT1G70630 | 29.384 | 211 | 117 | 6 | 97 | 297 | 261 | 449 | 2.77e-16 | 80.9 |
| MsG0480021230.01.T01 | AT1G70630 | 29.384 | 211 | 117 | 6 | 97 | 297 | 261 | 449 | 2.77e-16 | 80.9 |
| MsG0480021230.01.T01 | AT1G70630 | 29.384 | 211 | 117 | 6 | 97 | 297 | 398 | 586 | 3.87e-16 | 80.5 |
| MsG0480021230.01.T01 | AT1G70630 | 29.384 | 211 | 117 | 6 | 97 | 297 | 467 | 655 | 5.32e-16 | 80.1 |
| MsG0480021230.01.T01 | AT1G70630 | 29.384 | 211 | 117 | 6 | 97 | 297 | 446 | 634 | 5.68e-16 | 80.1 |
| MsG0480021230.01.T01 | AT1G70630 | 29.384 | 211 | 117 | 6 | 97 | 297 | 477 | 665 | 5.81e-16 | 80.1 |
Find 78 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCGGGTCTCTTTGGTAAAA+TGG | 0.121490 | 4:+55439892 | None:intergenic |
| CATTCCTTCAATTGAGCTTT+TGG | 0.209327 | 4:-55439557 | MsG0480021230.01.T01:CDS |
| ATACAGTTAAATGCAGTTAA+AGG | 0.242616 | 4:-55441295 | None:intergenic |
| AGTTAAAGGAGACACAATTT+TGG | 0.274031 | 4:-55441281 | MsG0480021230.01.T01:CDS |
| CATAATAACATGACAGCTTA+TGG | 0.285401 | 4:-55439682 | MsG0480021230.01.T01:CDS |
| GTTGTTGAATATTATGTTAA+TGG | 0.296088 | 4:-55439286 | MsG0480021230.01.T01:CDS |
| TATCATTATCCGGGTCTCTT+TGG | 0.318671 | 4:+55439884 | None:intergenic |
| AAGGCAACAACTAGGTAATT+AGG | 0.336091 | 4:+55439955 | None:intergenic |
| TCATGCTGCTAAAAGAACTA+TGG | 0.353213 | 4:-55439437 | MsG0480021230.01.T01:CDS |
| TCTAATAAATTTGCCAATCT+CGG | 0.356388 | 4:+55440078 | None:intergenic |
| TTGTTGAATATTATGTTAAT+GGG | 0.359540 | 4:-55439285 | MsG0480021230.01.T01:CDS |
| CATGTTAAAATCAGAATTAG+TGG | 0.362941 | 4:-55440277 | MsG0480021230.01.T01:CDS |
| TATACCAACTCTCTTGATAT+TGG | 0.365508 | 4:+55439978 | None:intergenic |
| GTTGCTTGCATTAAGTAAAC+AGG | 0.375504 | 4:-55440175 | MsG0480021230.01.T01:CDS |
| AATTCATCAGGAGCAACAAT+AGG | 0.376468 | 4:+55440108 | None:intergenic |
| CCGGAGACAGCCGCCCCGTT+TGG | 0.377429 | 4:+55439841 | None:intergenic |
| TAATTCACGTGAATAATTAC+CGG | 0.389710 | 4:+55439340 | None:intergenic |
| CGAGGTGTGCCATCGGGAAA+TGG | 0.401340 | 4:+55439244 | None:intergenic |
| CCGGGTCTCTTTGGTAAAAT+GGG | 0.403345 | 4:+55439893 | None:intergenic |
| ACAGTATCAATATCATTATC+CGG | 0.404384 | 4:+55439874 | None:intergenic |
| AGAATTAGTGGCACTCTTAT+CGG | 0.411192 | 4:-55440265 | MsG0480021230.01.T01:CDS |
| CTAATAAATTTGCCAATCTC+GGG | 0.411225 | 4:+55440079 | None:intergenic |
| CCAAACGGGGCGGCTGTCTC+CGG | 0.412973 | 4:-55439841 | MsG0480021230.01.T01:CDS |
| TGAATTCTTGAACCCGAGAT+TGG | 0.422149 | 4:-55440091 | MsG0480021230.01.T01:CDS |
| TGATCATCTATACCGTGATT+CGG | 0.426234 | 4:-55439728 | MsG0480021230.01.T01:CDS |
| CTCGGGTTCAAGAATTCATC+AGG | 0.455431 | 4:+55440096 | None:intergenic |
| AGCTCAATTGAAGGAATGGT+TGG | 0.470800 | 4:+55439562 | None:intergenic |
| AAAGAGTTCCTCGTTGAAAA+CGG | 0.480750 | 4:+55439489 | None:intergenic |
| TCAACAACTGCTTTCATTCG+CGG | 0.485251 | 4:+55439301 | None:intergenic |
| ATTCATCAGGAGCAACAATA+GGG | 0.490622 | 4:+55440109 | None:intergenic |
| CCTTCACATTTGAGTTTGCA+AGG | 0.492258 | 4:+55440022 | None:intergenic |
| TCACGGTATAGATGATCAAA+AGG | 0.505121 | 4:+55439733 | None:intergenic |
| GACTTTCGAAGGGGAATGCA+TGG | 0.506305 | 4:-55439519 | MsG0480021230.01.T01:CDS |
| CAAAAGCTCAATTGAAGGAA+TGG | 0.508580 | 4:+55439558 | None:intergenic |
| GGTTATCGAGGTGTGCCATC+GGG | 0.509771 | 4:+55439238 | None:intergenic |
| TAGAATACGAAATTTAAGTC+CGG | 0.511442 | 4:+55439822 | None:intergenic |
| GTTATTATGACCATCGCTCA+TGG | 0.514082 | 4:+55439696 | None:intergenic |
| TAACCTCAGTAAATTGAAAC+CGG | 0.514324 | 4:-55439359 | MsG0480021230.01.T01:CDS |
| CCATCACATCCTGGTTATGA+CGG | 0.520532 | 4:-55439463 | MsG0480021230.01.T01:CDS |
| CGGTCCAAAAGCTCAATTGA+AGG | 0.530180 | 4:+55439553 | None:intergenic |
| GATAATGATATTGATACTGT+TGG | 0.535960 | 4:-55439871 | MsG0480021230.01.T01:CDS |
| ATCAGGAGCAACAATAGGGT+TGG | 0.536486 | 4:+55440113 | None:intergenic |
| AAAACAGGTGAGGGAGTTGA+CGG | 0.545877 | 4:-55440223 | MsG0480021230.01.T01:CDS |
| GCATGAAGCCCGTCATAACC+AGG | 0.559070 | 4:+55439454 | None:intergenic |
| TGAAGGAAATGCTCGAGGTA+TGG | 0.559342 | 4:-55440005 | MsG0480021230.01.T01:CDS |
| CATCACATCCTGGTTATGAC+GGG | 0.559997 | 4:-55439462 | MsG0480021230.01.T01:CDS |
| CAGTATCAATATCATTATCC+GGG | 0.561690 | 4:+55439875 | None:intergenic |
| TCAAAGACCATGGGATGGGT+TGG | 0.564496 | 4:-55439645 | MsG0480021230.01.T01:CDS |
| TGTGGCAGCACGACTTTCGA+AGG | 0.565368 | 4:-55439530 | MsG0480021230.01.T01:CDS |
| AGGTTATCGAGGTGTGCCAT+CGG | 0.565382 | 4:+55439237 | None:intergenic |
| GAAATGGTTTGAGAGCATCT+TGG | 0.566472 | 4:+55439260 | None:intergenic |
| GTCTTCAAAGACCATGGGAT+GGG | 0.567731 | 4:-55439649 | MsG0480021230.01.T01:CDS |
| CTTCACATTTGAGTTTGCAA+GGG | 0.571821 | 4:+55440023 | None:intergenic |
| TCGAAAGTCGTGCTGCCACA+CGG | 0.575082 | 4:+55439533 | None:intergenic |
| GTTCCTCGTTGAAAACGGCT+TGG | 0.577634 | 4:+55439494 | None:intergenic |
| CATCGTCTAAGGCAACAACT+AGG | 0.582454 | 4:+55439947 | None:intergenic |
| AACGATGTCTTCAAAGACCA+TGG | 0.583875 | 4:-55439655 | MsG0480021230.01.T01:CDS |
| CCTTGCAAACTCAAATGTGA+AGG | 0.591600 | 4:-55440022 | MsG0480021230.01.T01:CDS |
| GTGGCAGCACGACTTTCGAA+GGG | 0.594024 | 4:-55439529 | MsG0480021230.01.T01:CDS |
| TTCACCAATATCAAGAGAGT+TGG | 0.596908 | 4:-55439982 | MsG0480021230.01.T01:CDS |
| AATGCCTTGACAGTACCAAA+AGG | 0.604979 | 4:+55440141 | None:intergenic |
| CCGTCATAACCAGGATGTGA+TGG | 0.606127 | 4:+55439463 | None:intergenic |
| TCATTCGCGGAAGCTTATCA+CGG | 0.615337 | 4:+55439314 | None:intergenic |
| TGGATTCAACATCCGAATCA+CGG | 0.620285 | 4:+55439716 | None:intergenic |
| TGTCTTCAAAGACCATGGGA+TGG | 0.621538 | 4:-55439650 | MsG0480021230.01.T01:CDS |
| TAGTAGACCAACCCATCCCA+TGG | 0.627281 | 4:+55439638 | None:intergenic |
| GATGTTGAATCCATGAGCGA+TGG | 0.628620 | 4:-55439706 | MsG0480021230.01.T01:CDS |
| CTACTAACGTTTATACGATG+AGG | 0.637978 | 4:-55439621 | MsG0480021230.01.T01:CDS |
| ACGATGTCTTCAAAGACCAT+GGG | 0.646143 | 4:-55439654 | MsG0480021230.01.T01:CDS |
| ACATAGAAACAAGGTTATCG+AGG | 0.646977 | 4:+55439226 | None:intergenic |
| CAGGTGAGGGAGTTGACGGA+AGG | 0.652925 | 4:-55440219 | MsG0480021230.01.T01:CDS |
| ACTTTCGAAGGGGAATGCAT+GGG | 0.655092 | 4:-55439518 | MsG0480021230.01.T01:CDS |
| AAATGTGAAGGAAATGCTCG+AGG | 0.663837 | 4:-55440010 | MsG0480021230.01.T01:CDS |
| TTACCGGTTTCAATTTACTG+AGG | 0.667376 | 4:+55439356 | None:intergenic |
| GTTGACGGAAGGAAAAGACC+AGG | 0.673638 | 4:-55440208 | MsG0480021230.01.T01:CDS |
| GCTCTCAAACCATTTCCCGA+TGG | 0.676608 | 4:-55439253 | MsG0480021230.01.T01:CDS |
| TGGCAGCACGACTTTCGAAG+GGG | 0.696691 | 4:-55439528 | MsG0480021230.01.T01:CDS |
| TTCGCGGAAGCTTATCACGG+TGG | 0.727930 | 4:+55439317 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATTAATATTATAAAAA+TGG | + | Chr4:55439315-55439334 | None:intergenic | 0.0% |
| !! | ATTTAAATCTTTATTGAAAT+AGG | - | Chr4:55439592-55439611 | MsG0480021230.01.T01:CDS | 10.0% |
| !! | TATATATTAGTTAAAACAAA+GGG | - | Chr4:55440009-55440028 | MsG0480021230.01.T01:CDS | 10.0% |
| !! | TTATATATTAGTTAAAACAA+AGG | - | Chr4:55440008-55440027 | MsG0480021230.01.T01:CDS | 10.0% |
| !!! | ACAAAATATAATTTTATACA+AGG | + | Chr4:55439430-55439449 | None:intergenic | 10.0% |
| !!! | ATGATTTTATATTTTGAAAT+AGG | - | Chr4:55439683-55439702 | MsG0480021230.01.T01:CDS | 10.0% |
| !! | GTTTAAATAAATGGTATAAA+TGG | + | Chr4:55439965-55439984 | None:intergenic | 15.0% |
| !! | TTGGAAAATAAATTCTAATA+AGG | - | Chr4:55440045-55440064 | MsG0480021230.01.T01:CDS | 15.0% |
| !! | TTGTTGAATATTATGTTAAT+GGG | - | Chr4:55441240-55441259 | MsG0480021230.01.T01:intron | 15.0% |
| !!! | GATTTTTTATTTTATTCTCT+TGG | - | Chr4:55440184-55440203 | MsG0480021230.01.T01:CDS | 15.0% |
| !! | ACAATAAAAAAGCAGATAAA+TGG | - | Chr4:55439824-55439843 | MsG0480021230.01.T01:CDS | 20.0% |
| !! | ATACTAGTAGTATATAGTAA+AGG | - | Chr4:55439524-55439543 | MsG0480021230.01.T01:CDS | 20.0% |
| !! | GTAAAAAGTAATTAAGTCTA+GGG | + | Chr4:55439483-55439502 | None:intergenic | 20.0% |
| !! | GTTGTTGAATATTATGTTAA+TGG | - | Chr4:55441239-55441258 | MsG0480021230.01.T01:intron | 20.0% |
| !! | TACTAGTAGTATATAGTAAA+GGG | - | Chr4:55439525-55439544 | MsG0480021230.01.T01:CDS | 20.0% |
| !!! | AAAGGGAATGATATTTTAAT+TGG | - | Chr4:55440026-55440045 | MsG0480021230.01.T01:CDS | 20.0% |
| ! | ACAGTATCAATATCATTATC+CGG | + | Chr4:55440654-55440673 | None:intergenic | 25.0% |
| ! | ACTAGTAGTATATAGTAAAG+GGG | - | Chr4:55439526-55439545 | MsG0480021230.01.T01:CDS | 25.0% |
| ! | CACAACAATAGTAACAAAAT+TGG | - | Chr4:55439381-55439400 | MsG0480021230.01.T01:CDS | 25.0% |
| ! | CATGTTAAAATCAGAATTAG+TGG | - | Chr4:55440248-55440267 | MsG0480021230.01.T01:CDS | 25.0% |
| ! | GATAATGATATTGATACTGT+TGG | - | Chr4:55440654-55440673 | MsG0480021230.01.T01:intron | 25.0% |
| ! | GGTAAAAAGTAATTAAGTCT+AGG | + | Chr4:55439484-55439503 | None:intergenic | 25.0% |
| ! | TAATTCACGTGAATAATTAC+CGG | + | Chr4:55441188-55441207 | None:intergenic | 25.0% |
| ! | TAGAATACGAAATTTAAGTC+CGG | + | Chr4:55440706-55440725 | None:intergenic | 25.0% |
| ! | TCTAATAAATTTGCCAATCT+CGG | + | Chr4:55440450-55440469 | None:intergenic | 25.0% |
| !! | AATTTGAAGTTAGAGAACTT+TGG | + | Chr4:55440094-55440113 | None:intergenic | 25.0% |
| !! | CAATTTTGTTACTATTGTTG+TGG | + | Chr4:55439383-55439402 | None:intergenic | 25.0% |
| !! | TTTAGAGTGCAACATATAAA+GGG | - | Chr4:55439910-55439929 | MsG0480021230.01.T01:CDS | 25.0% |
| !!! | AGGATATTTGTTTTCAATTC+TGG | - | Chr4:55440924-55440943 | MsG0480021230.01.T01:intron | 25.0% |
| !!! | TTTTAGAGTGCAACATATAA+AGG | - | Chr4:55439909-55439928 | MsG0480021230.01.T01:CDS | 25.0% |
| !!! | TTTTATTTTATTCTCTTGGC+AGG | - | Chr4:55440188-55440207 | MsG0480021230.01.T01:CDS | 25.0% |
| AAGAAGTCATTGAGAAACAA+AGG | + | Chr4:55440131-55440150 | None:intergenic | 30.0% | |
| ACTGTTGGAAAAATTCCAAA+CGG | - | Chr4:55440669-55440688 | MsG0480021230.01.T01:intron | 30.0% | |
| ATTTATAACCGGTTGAAAGA+TGG | + | Chr4:55439866-55439885 | None:intergenic | 30.0% | |
| CAGTATCAATATCATTATCC+GGG | + | Chr4:55440653-55440672 | None:intergenic | 30.0% | |
| CATAATAACATGACAGCTTA+TGG | - | Chr4:55440843-55440862 | MsG0480021230.01.T01:intron | 30.0% | |
| CGCAACAATAAAAACAACAT+TGG | - | Chr4:55439622-55439641 | MsG0480021230.01.T01:CDS | 30.0% | |
| CTAATAAATTTGCCAATCTC+GGG | + | Chr4:55440449-55440468 | None:intergenic | 30.0% | |
| GGGTAAAATTGACAGAAAAA+TGG | + | Chr4:55439463-55439482 | None:intergenic | 30.0% | |
| TAACCTCAGTAAATTGAAAC+CGG | - | Chr4:55441166-55441185 | MsG0480021230.01.T01:intron | 30.0% | |
| TATACCAACTCTCTTGATAT+TGG | + | Chr4:55440550-55440569 | None:intergenic | 30.0% | |
| TCAAGACATGCACAATAAAA+TGG | + | Chr4:55439505-55439524 | None:intergenic | 30.0% | |
| TTAAGTAAACAGGAAAAAGC+TGG | - | Chr4:55440360-55440379 | MsG0480021230.01.T01:intron | 30.0% | |
| ! | AGTTAAAGGAGACACAATTT+TGG | - | Chr4:55439244-55439263 | MsG0480021230.01.T01:CDS | 30.0% |
| ! | CTAAGAGAATTTTTGCAGTT+GGG | - | Chr4:55440723-55440742 | MsG0480021230.01.T01:intron | 30.0% |
| ! | GTTAAAGGAGACACAATTTT+GGG | - | Chr4:55439245-55439264 | MsG0480021230.01.T01:CDS | 30.0% |
| ! | TCTAAGAGAATTTTTGCAGT+TGG | - | Chr4:55440722-55440741 | MsG0480021230.01.T01:intron | 30.0% |
| ! | TTTTAGACGAAGGTTAAAAC+CGG | + | Chr4:55439285-55439304 | None:intergenic | 30.0% |
| !! | GTTGCACTCTAAAATTTGAT+AGG | + | Chr4:55439903-55439922 | None:intergenic | 30.0% |
| AAAGAGTTCCTCGTTGAAAA+CGG | + | Chr4:55441039-55441058 | None:intergenic | 35.0% | |
| AAATGCAGAGCTGAAAAAAC+AGG | - | Chr4:55440287-55440306 | MsG0480021230.01.T01:CDS | 35.0% | |
| AAGGCAACAACTAGGTAATT+AGG | + | Chr4:55440573-55440592 | None:intergenic | 35.0% | |
| AATTCATCAGGAGCAACAAT+AGG | + | Chr4:55440420-55440439 | None:intergenic | 35.0% | |
| AGAATTAGTGGCACTCTTAT+CGG | - | Chr4:55440260-55440279 | MsG0480021230.01.T01:CDS | 35.0% | |
| ATCAGTTTCCATCTTTCAAC+CGG | - | Chr4:55439855-55439874 | MsG0480021230.01.T01:CDS | 35.0% | |
| ATTCATCAGGAGCAACAATA+GGG | + | Chr4:55440419-55440438 | None:intergenic | 35.0% | |
| CAAAAGCTCAATTGAAGGAA+TGG | + | Chr4:55440970-55440989 | None:intergenic | 35.0% | |
| CTACTAACGTTTATACGATG+AGG | - | Chr4:55440904-55440923 | MsG0480021230.01.T01:intron | 35.0% | |
| CTGTTGGAAAAATTCCAAAC+GGG | - | Chr4:55440670-55440689 | MsG0480021230.01.T01:intron | 35.0% | |
| GTTGCTTGCATTAAGTAAAC+AGG | - | Chr4:55440350-55440369 | MsG0480021230.01.T01:intron | 35.0% | |
| TCACGGTATAGATGATCAAA+AGG | + | Chr4:55440795-55440814 | None:intergenic | 35.0% | |
| TCATGCTGCTAAAAGAACTA+TGG | - | Chr4:55441088-55441107 | MsG0480021230.01.T01:intron | 35.0% | |
| TGATCATCTATACCGTGATT+CGG | - | Chr4:55440797-55440816 | MsG0480021230.01.T01:intron | 35.0% | |
| TGTTGGAAAAATTCCAAACG+GGG | - | Chr4:55440671-55440690 | MsG0480021230.01.T01:intron | 35.0% | |
| TTCACCAATATCAAGAGAGT+TGG | - | Chr4:55440543-55440562 | MsG0480021230.01.T01:intron | 35.0% | |
| TTTAGACGAAGGTTAAAACC+GGG | + | Chr4:55439284-55439303 | None:intergenic | 35.0% | |
| ! | CATTCCTTCAATTGAGCTTT+TGG | - | Chr4:55440968-55440987 | MsG0480021230.01.T01:intron | 35.0% |
| ! | CTTCACATTTGAGTTTGCAA+GGG | + | Chr4:55440505-55440524 | None:intergenic | 35.0% |
| ! | TTTTGCAATCTCATCGTCTA+AGG | + | Chr4:55440592-55440611 | None:intergenic | 35.0% |
| !! | TTACCGGTTTCAATTTACTG+AGG | + | Chr4:55441172-55441191 | None:intergenic | 35.0% |
| !!! | TGGTCAAAAGTTTTAGACGA+AGG | + | Chr4:55439295-55439314 | None:intergenic | 35.0% |
| AAATGTGAAGGAAATGCTCG+AGG | - | Chr4:55440515-55440534 | MsG0480021230.01.T01:intron | 40.0% | |
| AACGATGTCTTCAAAGACCA+TGG | - | Chr4:55440870-55440889 | MsG0480021230.01.T01:intron | 40.0% | |
| AATGCCTTGACAGTACCAAA+AGG | + | Chr4:55440387-55440406 | None:intergenic | 40.0% | |
| ACGATGTCTTCAAAGACCAT+GGG | - | Chr4:55440871-55440890 | MsG0480021230.01.T01:intron | 40.0% | |
| AGAGCTGAAAAAACAGGTGA+GGG | - | Chr4:55440293-55440312 | MsG0480021230.01.T01:CDS | 40.0% | |
| AGCTCAATTGAAGGAATGGT+TGG | + | Chr4:55440966-55440985 | None:intergenic | 40.0% | |
| CCTTGCAAACTCAAATGTGA+AGG | - | Chr4:55440503-55440522 | MsG0480021230.01.T01:intron | 40.0% | |
| GTTATTATGACCATCGCTCA+TGG | + | Chr4:55440832-55440851 | None:intergenic | 40.0% | |
| TATCATTATCCGGGTCTCTT+TGG | + | Chr4:55440644-55440663 | None:intergenic | 40.0% | |
| TCAACAACTGCTTTCATTCG+CGG | + | Chr4:55441227-55441246 | None:intergenic | 40.0% | |
| TGAATTCTTGAACCCGAGAT+TGG | - | Chr4:55440434-55440453 | MsG0480021230.01.T01:intron | 40.0% | |
| TGGATTCAACATCCGAATCA+CGG | + | Chr4:55440812-55440831 | None:intergenic | 40.0% | |
| ! | CCTTCACATTTGAGTTTGCA+AGG | + | Chr4:55440506-55440525 | None:intergenic | 40.0% |
| ! | CTCTTTTATCCATCACATCC+TGG | - | Chr4:55441053-55441072 | MsG0480021230.01.T01:intron | 40.0% |
| ! | TGAACAGCAGAGTTCTTTTC+AGG | - | Chr4:55441126-55441145 | MsG0480021230.01.T01:intron | 40.0% |
| !! | GAAATGGTTTGAGAGCATCT+TGG | + | Chr4:55441268-55441287 | None:intergenic | 40.0% |
| !!! | CAAGCAACTTTTTTTCAGCC+TGG | + | Chr4:55440338-55440357 | None:intergenic | 40.0% |
| !!! | TTGGGCTGAATTTTTTGTCC+CGG | - | Chr4:55439263-55439282 | MsG0480021230.01.T01:CDS | 40.0% |
| AAAACAGGTGAGGGAGTTGA+CGG | - | Chr4:55440302-55440321 | MsG0480021230.01.T01:CDS | 45.0% | |
| ACTTTCGAAGGGGAATGCAT+GGG | - | Chr4:55441007-55441026 | MsG0480021230.01.T01:intron | 45.0% | |
| ATCAGGAGCAACAATAGGGT+TGG | + | Chr4:55440415-55440434 | None:intergenic | 45.0% | |
| CAGAGCTGAAAAAACAGGTG+AGG | - | Chr4:55440292-55440311 | MsG0480021230.01.T01:CDS | 45.0% | |
| CATCACATCCTGGTTATGAC+GGG | - | Chr4:55441063-55441082 | MsG0480021230.01.T01:intron | 45.0% | |
| CCATCACATCCTGGTTATGA+CGG | - | Chr4:55441062-55441081 | MsG0480021230.01.T01:intron | 45.0% | |
| CCGGGTCTCTTTGGTAAAAT+GGG | + | Chr4:55440635-55440654 | None:intergenic | 45.0% | |
| CGGTCCAAAAGCTCAATTGA+AGG | + | Chr4:55440975-55440994 | None:intergenic | 45.0% | |
| CTCGGGTTCAAGAATTCATC+AGG | + | Chr4:55440432-55440451 | None:intergenic | 45.0% | |
| GATGTTGAATCCATGAGCGA+TGG | - | Chr4:55440819-55440838 | MsG0480021230.01.T01:intron | 45.0% | |
| GTCTTCAAAGACCATGGGAT+GGG | - | Chr4:55440876-55440895 | MsG0480021230.01.T01:intron | 45.0% | |
| TCATTCGCGGAAGCTTATCA+CGG | + | Chr4:55441214-55441233 | None:intergenic | 45.0% | |
| TCCGGGTCTCTTTGGTAAAA+TGG | + | Chr4:55440636-55440655 | None:intergenic | 45.0% | |
| TGAAGGAAATGCTCGAGGTA+TGG | - | Chr4:55440520-55440539 | MsG0480021230.01.T01:intron | 45.0% | |
| TGGAAAAATTCCAAACGGGG+CGG | - | Chr4:55440674-55440693 | MsG0480021230.01.T01:intron | 45.0% | |
| TGTCTTCAAAGACCATGGGA+TGG | - | Chr4:55440875-55440894 | MsG0480021230.01.T01:intron | 45.0% | |
| ! | AATTGAGCTTTTGGACCGTG+TGG | - | Chr4:55440977-55440996 | MsG0480021230.01.T01:intron | 45.0% |
| ! | CAGGAAAAAGCTGGACCTTT+TGG | - | Chr4:55440369-55440388 | MsG0480021230.01.T01:intron | 45.0% |
| ! | CATCGTCTAAGGCAACAACT+AGG | + | Chr4:55440581-55440600 | None:intergenic | 45.0% |
| ! | CCCATTTTACCAAAGAGACC+CGG | - | Chr4:55440632-55440651 | MsG0480021230.01.T01:intron | 45.0% |
| ! | TGGACCTTTTGGTACTGTCA+AGG | - | Chr4:55440380-55440399 | MsG0480021230.01.T01:intron | 45.0% |
| !! | GAGTTCTTTTCAGGACAGTG+AGG | - | Chr4:55441135-55441154 | MsG0480021230.01.T01:intron | 45.0% |
| !! | ATTATAATTGTTTAAATAAA+TGG | + | Chr4:55439974-55439993 | None:intergenic | 5.0% |
| !!! | TTTATTTTATTATTTATAAC+CGG | + | Chr4:55439877-55439896 | None:intergenic | 5.0% |
| CCGTCATAACCAGGATGTGA+TGG | + | Chr4:55441065-55441084 | None:intergenic | 50.0% | |
| GACTTTCGAAGGGGAATGCA+TGG | - | Chr4:55441006-55441025 | MsG0480021230.01.T01:intron | 50.0% | |
| GCTCTCAAACCATTTCCCGA+TGG | - | Chr4:55441272-55441291 | MsG0480021230.01.T01:CDS | 50.0% | |
| GTTCCTCGTTGAAAACGGCT+TGG | + | Chr4:55441034-55441053 | None:intergenic | 50.0% | |
| GTTGACGGAAGGAAAAGACC+AGG | - | Chr4:55440317-55440336 | MsG0480021230.01.T01:CDS | 50.0% | |
| TAGTAGACCAACCCATCCCA+TGG | + | Chr4:55440890-55440909 | None:intergenic | 50.0% | |
| TCAAAGACCATGGGATGGGT+TGG | - | Chr4:55440880-55440899 | MsG0480021230.01.T01:intron | 50.0% | |
| GCATGAAGCCCGTCATAACC+AGG | + | Chr4:55441074-55441093 | None:intergenic | 55.0% | |
| GTGGCAGCACGACTTTCGAA+GGG | - | Chr4:55440996-55441015 | MsG0480021230.01.T01:intron | 55.0% | |
| TCGAAAGTCGTGCTGCCACA+CGG | + | Chr4:55440995-55441014 | None:intergenic | 55.0% | |
| TGGCAGCACGACTTTCGAAG+GGG | - | Chr4:55440997-55441016 | MsG0480021230.01.T01:intron | 55.0% | |
| TGTGGCAGCACGACTTTCGA+AGG | - | Chr4:55440995-55441014 | MsG0480021230.01.T01:intron | 55.0% | |
| TTCGCGGAAGCTTATCACGG+TGG | + | Chr4:55441211-55441230 | None:intergenic | 55.0% | |
| !! | GGACCAAGCCGTTTTCAACG+AGG | - | Chr4:55441028-55441047 | MsG0480021230.01.T01:intron | 55.0% |
| CAGGTGAGGGAGTTGACGGA+AGG | - | Chr4:55440306-55440325 | MsG0480021230.01.T01:CDS | 60.0% | |
| CGAGGTGTGCCATCGGGAAA+TGG | + | Chr4:55441284-55441303 | None:intergenic | 60.0% | |
| CCAAACGGGGCGGCTGTCTC+CGG | - | Chr4:55440684-55440703 | MsG0480021230.01.T01:intron | 70.0% | |
| CCGGAGACAGCCGCCCCGTT+TGG | + | Chr4:55440687-55440706 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 55439240 | 55441307 | 55439240 | ID=MsG0480021230.01;Name=MsG0480021230.01 |
| Chr4 | mRNA | 55439240 | 55441307 | 55439240 | ID=MsG0480021230.01.T01;Parent=MsG0480021230.01;Name=MsG0480021230.01.T01;_AED=0.43;_eAED=0.43;_QI=0|0|0|0.5|1|1|2|0|380 |
| Chr4 | exon | 55441263 | 55441307 | 55441263 | ID=MsG0480021230.01.T01:exon:6778;Parent=MsG0480021230.01.T01 |
| Chr4 | exon | 55439240 | 55440337 | 55439240 | ID=MsG0480021230.01.T01:exon:6777;Parent=MsG0480021230.01.T01 |
| Chr4 | CDS | 55441263 | 55441307 | 55441263 | ID=MsG0480021230.01.T01:cds;Parent=MsG0480021230.01.T01 |
| Chr4 | CDS | 55439240 | 55440337 | 55439240 | ID=MsG0480021230.01.T01:cds;Parent=MsG0480021230.01.T01 |
| Gene Sequence |
| Protein sequence |
