Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048396.01.T01 | XP_003600455.1 | 69.847 | 262 | 53 | 1 | 21 | 256 | 20 | 281 | 1.78E-123 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048396.01.T01 | Q8L3W1 | 31.897 | 116 | 74 | 1 | 21 | 131 | 19 | 134 | 3.41E-15 | 77.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048396.01.T01 | G8A2Z2 | 69.847 | 262 | 53 | 1 | 21 | 256 | 20 | 281 | 8.51e-124 | 363 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048396.01 | MsG0080048874.01 | 0.800426 | 1.449161e-48 | 6.745894e-46 |
| MsG0080048396.01 | MsG0180002195.01 | 0.804313 | 2.293126e-49 | 1.178568e-46 |
| MsG0080048396.01 | MsG0180003361.01 | 0.817923 | 2.563441e-52 | 1.891894e-49 |
| MsG0080048396.01 | MsG0180004264.01 | 0.801465 | 8.888950e-49 | 4.247885e-46 |
| MsG0080048396.01 | MsG0280009248.01 | 0.813158 | 2.949168e-51 | 1.911153e-48 |
| MsG0080048396.01 | MsG0280010443.01 | 0.800379 | 1.481752e-48 | 6.889332e-46 |
| MsG0080048396.01 | MsG0380017266.01 | -0.811088 | 8.339097e-51 | 5.114616e-48 |
| MsG0080048396.01 | MsG0480021350.01 | 0.833027 | 6.751592e-56 | 7.680714e-53 |
| MsG0080048396.01 | MsG0580024690.01 | 0.805021 | 1.632239e-49 | 8.543284e-47 |
| MsG0080048396.01 | MsG0580027332.01 | 0.807127 | 5.882435e-50 | 3.249916e-47 |
| MsG0080048396.01 | MsG0580028990.01 | 0.812654 | 3.802660e-51 | 2.431565e-48 |
| MsG0080048396.01 | MsG0580029554.01 | 0.802169 | 6.372754e-49 | 3.100379e-46 |
| MsG0080048396.01 | MsG0780036498.01 | 0.835289 | 1.829481e-56 | 2.227457e-53 |
| MsG0080048396.01 | MsG0780038424.01 | 0.800852 | 1.186614e-48 | 5.583726e-46 |
| MsG0080048396.01 | MsG0880044644.01 | 0.814305 | 1.648931e-51 | 1.102485e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048396.01.T01 | MTR_3g061370 | 69.847 | 262 | 53 | 1 | 21 | 256 | 20 | 281 | 2.16e-127 | 363 |
| MsG0080048396.01.T01 | MTR_3g061350 | 68.702 | 262 | 56 | 1 | 21 | 256 | 23 | 284 | 2.04e-123 | 353 |
| MsG0080048396.01.T01 | MTR_3g061320 | 67.939 | 262 | 53 | 4 | 21 | 256 | 23 | 279 | 1.17e-117 | 338 |
| MsG0080048396.01.T01 | MTR_3g061310 | 65.530 | 264 | 62 | 3 | 21 | 256 | 23 | 285 | 1.43e-111 | 323 |
| MsG0080048396.01.T01 | MTR_3g061340 | 63.118 | 263 | 59 | 5 | 21 | 256 | 23 | 274 | 1.60e-103 | 302 |
| MsG0080048396.01.T01 | MTR_3g061330 | 67.391 | 230 | 47 | 3 | 21 | 223 | 23 | 251 | 1.73e-99 | 291 |
| MsG0080048396.01.T01 | MTR_3g061290 | 73.154 | 149 | 39 | 1 | 21 | 169 | 23 | 170 | 1.24e-69 | 213 |
| MsG0080048396.01.T01 | MTR_3g061220 | 64.545 | 110 | 24 | 3 | 21 | 130 | 23 | 117 | 4.22e-40 | 135 |
| MsG0080048396.01.T01 | MTR_1g035460 | 32.867 | 286 | 140 | 8 | 24 | 257 | 2 | 287 | 2.97e-38 | 138 |
| MsG0080048396.01.T01 | MTR_3g061300 | 53.659 | 123 | 31 | 1 | 161 | 257 | 2 | 124 | 1.05e-34 | 121 |
| MsG0080048396.01.T01 | MTR_1g108780 | 36.842 | 171 | 99 | 2 | 14 | 183 | 3 | 165 | 9.54e-30 | 116 |
| MsG0080048396.01.T01 | MTR_1g108780 | 25.292 | 257 | 166 | 9 | 18 | 257 | 211 | 458 | 5.90e-13 | 68.6 |
| MsG0080048396.01.T01 | MTR_7g050720 | 28.115 | 313 | 166 | 7 | 3 | 257 | 4 | 315 | 1.77e-29 | 113 |
| MsG0080048396.01.T01 | MTR_5g044670 | 29.032 | 279 | 146 | 9 | 24 | 257 | 32 | 303 | 2.66e-29 | 113 |
| MsG0080048396.01.T01 | MTR_7g050560 | 30.153 | 262 | 155 | 5 | 24 | 257 | 29 | 290 | 3.18e-29 | 112 |
| MsG0080048396.01.T01 | MTR_3g098790 | 30.258 | 271 | 152 | 6 | 24 | 257 | 29 | 299 | 1.30e-28 | 111 |
| MsG0080048396.01.T01 | MTR_8g103940 | 40.299 | 134 | 72 | 1 | 23 | 156 | 54 | 179 | 4.53e-28 | 112 |
| MsG0080048396.01.T01 | MTR_8g103940 | 50.000 | 62 | 30 | 1 | 196 | 257 | 435 | 495 | 3.90e-12 | 66.2 |
| MsG0080048396.01.T01 | MTR_5g070440 | 31.298 | 262 | 169 | 7 | 3 | 259 | 15 | 270 | 2.62e-24 | 98.6 |
| MsG0080048396.01.T01 | MTR_7g050710 | 48.810 | 84 | 43 | 0 | 23 | 106 | 28 | 111 | 9.14e-24 | 98.2 |
| MsG0080048396.01.T01 | MTR_3g005480 | 28.800 | 250 | 150 | 8 | 19 | 259 | 32 | 262 | 2.94e-23 | 95.9 |
| MsG0080048396.01.T01 | MTR_1g035640 | 27.778 | 270 | 159 | 7 | 21 | 259 | 18 | 282 | 5.10e-23 | 97.8 |
| MsG0080048396.01.T01 | MTR_3g005490 | 29.918 | 244 | 142 | 8 | 23 | 257 | 36 | 259 | 3.09e-22 | 92.8 |
| MsG0080048396.01.T01 | MTR_7g050590 | 49.398 | 83 | 42 | 0 | 24 | 106 | 2 | 84 | 3.73e-22 | 93.2 |
| MsG0080048396.01.T01 | MTR_7g050580 | 47.059 | 85 | 45 | 0 | 24 | 108 | 29 | 113 | 3.93e-21 | 90.9 |
| MsG0080048396.01.T01 | MTR_3g005420 | 27.160 | 243 | 163 | 4 | 23 | 259 | 304 | 538 | 2.49e-19 | 87.4 |
| MsG0080048396.01.T01 | MTR_3g005420 | 25.000 | 232 | 143 | 6 | 23 | 250 | 55 | 259 | 2.49e-12 | 66.6 |
| MsG0080048396.01.T01 | MTR_1g035570 | 26.909 | 275 | 154 | 8 | 21 | 255 | 18 | 285 | 3.66e-19 | 86.3 |
| MsG0080048396.01.T01 | MTR_1g034240 | 37.624 | 101 | 62 | 1 | 16 | 115 | 14 | 114 | 1.04e-18 | 85.1 |
| MsG0080048396.01.T01 | MTR_4g068320 | 34.188 | 117 | 70 | 1 | 23 | 132 | 21 | 137 | 1.22e-18 | 85.1 |
| MsG0080048396.01.T01 | MTR_4g119990 | 33.803 | 142 | 87 | 4 | 21 | 161 | 28 | 163 | 4.23e-18 | 83.2 |
| MsG0080048396.01.T01 | MTR_7g050640 | 44.872 | 78 | 43 | 0 | 24 | 101 | 29 | 106 | 4.71e-18 | 77.8 |
| MsG0080048396.01.T01 | MTR_1g035620 | 26.692 | 266 | 160 | 9 | 23 | 260 | 24 | 282 | 4.96e-18 | 83.2 |
| MsG0080048396.01.T01 | MTR_6g061070 | 27.211 | 294 | 147 | 11 | 24 | 256 | 34 | 321 | 5.61e-17 | 80.5 |
| MsG0080048396.01.T01 | MTR_1g033740 | 36.800 | 125 | 72 | 3 | 24 | 144 | 38 | 159 | 7.03e-17 | 77.0 |
| MsG0080048396.01.T01 | MTR_1g035510 | 34.177 | 158 | 97 | 4 | 24 | 181 | 2 | 152 | 1.03e-16 | 77.0 |
| MsG0080048396.01.T01 | MTR_3g005460 | 27.234 | 235 | 132 | 5 | 23 | 250 | 40 | 242 | 1.45e-16 | 79.3 |
| MsG0080048396.01.T01 | MTR_3g005460 | 25.820 | 244 | 167 | 4 | 23 | 256 | 277 | 516 | 2.64e-16 | 78.6 |
| MsG0080048396.01.T01 | MTR_1g050845 | 25.287 | 261 | 158 | 8 | 23 | 260 | 24 | 270 | 4.56e-16 | 78.2 |
| MsG0080048396.01.T01 | MTR_3g005495 | 30.472 | 233 | 134 | 7 | 23 | 250 | 258 | 467 | 1.34e-15 | 76.3 |
| MsG0080048396.01.T01 | MTR_3g005495 | 25.751 | 233 | 131 | 4 | 23 | 250 | 28 | 223 | 5.41e-15 | 74.7 |
| MsG0080048396.01.T01 | MTR_1g035470 | 40.000 | 115 | 60 | 4 | 24 | 133 | 2 | 112 | 2.92e-15 | 71.2 |
| MsG0080048396.01.T01 | MTR_1g035650 | 30.070 | 143 | 87 | 3 | 23 | 160 | 24 | 158 | 5.56e-15 | 72.0 |
| MsG0080048396.01.T01 | MTR_1g035480 | 36.522 | 115 | 65 | 3 | 24 | 133 | 33 | 144 | 9.28e-15 | 70.9 |
| MsG0080048396.01.T01 | MTR_1g035500 | 36.508 | 126 | 72 | 3 | 24 | 144 | 41 | 163 | 1.97e-14 | 70.1 |
| MsG0080048396.01.T01 | MTR_3g005440 | 33.981 | 103 | 68 | 0 | 23 | 125 | 35 | 137 | 3.41e-14 | 72.0 |
| MsG0080048396.01.T01 | MTR_3g005440 | 32.231 | 121 | 80 | 1 | 23 | 141 | 257 | 377 | 7.72e-13 | 68.2 |
| MsG0080048396.01.T01 | MTR_1g034210 | 39.080 | 87 | 51 | 1 | 23 | 109 | 22 | 106 | 3.59e-14 | 71.6 |
| MsG0080048396.01.T01 | MTR_1g034210 | 37.634 | 93 | 56 | 1 | 23 | 115 | 22 | 112 | 4.86e-14 | 71.2 |
| MsG0080048396.01.T01 | MTR_6g043890 | 36.782 | 87 | 54 | 1 | 21 | 106 | 28 | 114 | 3.77e-13 | 68.6 |
| MsG0080048396.01.T01 | MTR_1g035520 | 37.615 | 109 | 59 | 3 | 7 | 115 | 77 | 176 | 1.52e-12 | 67.0 |
| MsG0080048396.01.T01 | MTR_3g005420 | 25.000 | 232 | 143 | 6 | 23 | 250 | 36 | 240 | 2.87e-12 | 66.6 |
| MsG0080048396.01.T01 | MTR_1g035440 | 36.782 | 87 | 54 | 1 | 21 | 106 | 28 | 114 | 3.88e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048396.01.T01 | AT1G49475 | 39.552 | 134 | 68 | 3 | 22 | 144 | 48 | 179 | 4.24e-17 | 77.4 |
| MsG0080048396.01.T01 | AT3G18990 | 31.897 | 116 | 74 | 1 | 21 | 131 | 19 | 134 | 3.47e-16 | 77.4 |
| MsG0080048396.01.T01 | AT3G18990 | 31.897 | 116 | 74 | 1 | 21 | 131 | 19 | 134 | 4.33e-16 | 77.4 |
| MsG0080048396.01.T01 | AT3G18960 | 42.045 | 88 | 51 | 0 | 19 | 106 | 4 | 91 | 6.60e-16 | 73.9 |
| MsG0080048396.01.T01 | AT3G18960 | 41.667 | 84 | 49 | 0 | 23 | 106 | 45 | 128 | 3.68e-14 | 69.7 |
| MsG0080048396.01.T01 | AT3G18960 | 41.176 | 85 | 50 | 0 | 22 | 106 | 44 | 128 | 3.81e-14 | 69.7 |
| MsG0080048396.01.T01 | AT4G01580 | 37.755 | 98 | 57 | 1 | 22 | 115 | 44 | 141 | 4.21e-14 | 69.3 |
Find 54 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAATGTACCAAGTTTAAA+AGG | 0.192490 | contig29end:+32779 | MsG0080048396.01.T01:intron |
| TGATGAATCAGTTGAGATTT+TGG | 0.207341 | contig29end:+32306 | MsG0080048396.01.T01:CDS |
| ACACAAAATGGAAAATTTAT+TGG | 0.211795 | contig29end:+32074 | MsG0080048396.01.T01:CDS |
| AAAGAACTTCATCAATAAAT+TGG | 0.285020 | contig29end:+32560 | MsG0080048396.01.T01:CDS |
| AAGAATGGGGTGCTTCAAAT+TGG | 0.305697 | contig29end:+32821 | MsG0080048396.01.T01:CDS |
| AGACTCCTGATGACACAAAA+TGG | 0.311302 | contig29end:+32062 | MsG0080048396.01.T01:CDS |
| AGTCTATTTCTACTGCATTC+TGG | 0.333088 | contig29end:-32228 | None:intergenic |
| CTCTCTTGGACGTGGCTGTT+TGG | 0.347123 | contig29end:+32156 | MsG0080048396.01.T01:CDS |
| TTTACTGAAAATTACTCTCT+TGG | 0.363298 | contig29end:+32142 | MsG0080048396.01.T01:CDS |
| CTTTGCAAACAACGACCAAC+CGG | 0.388975 | contig29end:-32909 | None:intergenic |
| GTAATAATGAGATTAATATT+AGG | 0.401243 | contig29end:+31490 | MsG0080048396.01.T01:CDS |
| TGGTGAGATTTGGTTTGAAA+AGG | 0.404488 | contig29end:+32108 | MsG0080048396.01.T01:CDS |
| TTGGTTGTGTTTGAATATAA+AGG | 0.407121 | contig29end:+32175 | MsG0080048396.01.T01:CDS |
| CGAAATTTCTTATGTGGTTG+AGG | 0.409501 | contig29end:-32379 | None:intergenic |
| AAAGGAAAGTGGACTGCAAC+CGG | 0.409884 | contig29end:+32928 | MsG0080048396.01.T01:CDS |
| TGTCTCCTTGTAAACTTAGT+TGG | 0.417262 | contig29end:-32007 | None:intergenic |
| TTGAGAACAAGGAGAAGAAT+GGG | 0.434824 | contig29end:+32807 | MsG0080048396.01.T01:CDS |
| AGAATGTACCAAGTTTAAAA+GGG | 0.440224 | contig29end:+32780 | MsG0080048396.01.T01:intron |
| AAACCTCGAAATTTCTTATG+TGG | 0.440475 | contig29end:-32385 | None:intergenic |
| CAACCACATAAGAAATTTCG+AGG | 0.448613 | contig29end:+32382 | MsG0080048396.01.T01:CDS |
| AGATTTGGTTTGAAAAGGGT+TGG | 0.470784 | contig29end:+32113 | MsG0080048396.01.T01:CDS |
| TCCTGAGCTCTAGCATCCCT+TGG | 0.476761 | contig29end:-32583 | None:intergenic |
| ATTGAGAACAAGGAGAAGAA+TGG | 0.479617 | contig29end:+32806 | MsG0080048396.01.T01:CDS |
| AAGGGTCGCTGGCTTTCGTC+CGG | 0.479732 | contig29end:+32890 | MsG0080048396.01.T01:CDS |
| AGAATGGGGTGCTTCAAATT+GGG | 0.486287 | contig29end:+32822 | MsG0080048396.01.T01:CDS |
| AAAAGGGGTTATTGAGAACA+AGG | 0.491715 | contig29end:+32796 | MsG0080048396.01.T01:CDS |
| CTGTTGGTACAACCACACTA+AGG | 0.500363 | contig29end:+32871 | MsG0080048396.01.T01:CDS |
| GTCGCTGGCTTTCGTCCGGT+TGG | 0.501854 | contig29end:+32894 | MsG0080048396.01.T01:CDS |
| TTCAAATTGGGAAAAGATCA+TGG | 0.505109 | contig29end:+32834 | MsG0080048396.01.T01:CDS |
| GCCAAGGGATGCTAGAGCTC+AGG | 0.513948 | contig29end:+32582 | MsG0080048396.01.T01:CDS |
| GGTGAGATTTGGTTTGAAAA+GGG | 0.518476 | contig29end:+32109 | MsG0080048396.01.T01:CDS |
| CGGTTGGTCGTTGTTTGCAA+AGG | 0.518916 | contig29end:+32910 | MsG0080048396.01.T01:CDS |
| TCGTTGTTTGCAAAGGAAAG+TGG | 0.519381 | contig29end:+32917 | MsG0080048396.01.T01:CDS |
| TCAGGAGTCTTTATCACCAC+AGG | 0.520726 | contig29end:-32049 | None:intergenic |
| TAATGAGATTAATATTAGGC+AGG | 0.528100 | contig29end:+31494 | MsG0080048396.01.T01:CDS |
| CTTCATCAATAAATTGGCCA+AGG | 0.530612 | contig29end:+32566 | MsG0080048396.01.T01:CDS |
| AAGTATGTGTACATCAAACT+TGG | 0.555627 | contig29end:-32203 | None:intergenic |
| AAATACCAACTAAGTTTACA+AGG | 0.559571 | contig29end:+32002 | MsG0080048396.01.T01:CDS |
| ACAACCACACTAAGGGTCGC+TGG | 0.574129 | contig29end:+32879 | MsG0080048396.01.T01:CDS |
| GGAATGTGAAATTGCTCTGT+TGG | 0.576259 | contig29end:+32855 | MsG0080048396.01.T01:CDS |
| TCAAAGACACAAACATCTCC+CGG | 0.581806 | contig29end:-32947 | None:intergenic |
| TGAACGGCTTAATCGGAAGA+AGG | 0.583690 | contig29end:+32330 | MsG0080048396.01.T01:CDS |
| GAATGTACCAAGTTTAAAAG+GGG | 0.611239 | contig29end:+32781 | MsG0080048396.01.T01:intron |
| AAGGAAAGTGGACTGCAACC+GGG | 0.612688 | contig29end:+32929 | MsG0080048396.01.T01:CDS |
| TGTTGGTACAACCACACTAA+GGG | 0.614040 | contig29end:+32872 | MsG0080048396.01.T01:CDS |
| GAAAATTACTCTCTTGGACG+TGG | 0.618806 | contig29end:+32148 | MsG0080048396.01.T01:CDS |
| TTCATCAATAAATTGGCCAA+GGG | 0.622394 | contig29end:+32567 | MsG0080048396.01.T01:CDS |
| TTTACAAGGAGACATGGAGT+TGG | 0.631934 | contig29end:+32016 | MsG0080048396.01.T01:CDS |
| ACTAAGTTTACAAGGAGACA+TGG | 0.632567 | contig29end:+32010 | MsG0080048396.01.T01:CDS |
| TGTCTTTGAACTGATAAACA+AGG | 0.641859 | contig29end:+32961 | MsG0080048396.01.T01:CDS |
| TGTGGTTGAGGAGAAACAGA+AGG | 0.646974 | contig29end:-32367 | None:intergenic |
| AAAGCCAGCGACCCTTAGTG+TGG | 0.674774 | contig29end:-32883 | None:intergenic |
| TGAGAACAAGGAGAAGAATG+GGG | 0.717831 | contig29end:+32808 | MsG0080048396.01.T01:CDS |
| AGTTGGTCTATCAAATCCTG+TGG | 0.752396 | contig29end:+32033 | MsG0080048396.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAATAATGAGATTAATATT+AGG | + | contig29end:31490-31509 | MsG0080048396.01.T01:CDS | 15.0% |
| !! | AAAGAACTTCATCAATAAAT+TGG | + | contig29end:32560-32579 | MsG0080048396.01.T01:CDS | 20.0% |
| !! | ACACAAAATGGAAAATTTAT+TGG | + | contig29end:32074-32093 | MsG0080048396.01.T01:CDS | 20.0% |
| !! | ATTTATTGGAAAAAAATCGA+TGG | + | contig29end:32088-32107 | MsG0080048396.01.T01:CDS | 20.0% |
| !! | CTAAAGTAAATAGTACTAAT+AGG | - | contig29end:31730-31749 | None:intergenic | 20.0% |
| !!! | TAAAGTTCATGTTTTCAAAA+GGG | + | contig29end:32997-33016 | MsG0080048396.01.T01:CDS | 20.0% |
| !!! | TTAAAGTTCATGTTTTCAAA+AGG | + | contig29end:32996-33015 | MsG0080048396.01.T01:CDS | 20.0% |
| ! | AAATACCAACTAAGTTTACA+AGG | + | contig29end:32002-32021 | MsG0080048396.01.T01:CDS | 25.0% |
| ! | AGAATGTACCAAGTTTAAAA+GGG | + | contig29end:32780-32799 | MsG0080048396.01.T01:intron | 25.0% |
| ! | ATCATATAGTCATTACTCAT+TGG | + | contig29end:31582-31601 | MsG0080048396.01.T01:intron | 25.0% |
| ! | CTTTATGAGAATTGTGAAAA+AGG | - | contig29end:32637-32656 | None:intergenic | 25.0% |
| ! | TAATGAGATTAATATTAGGC+AGG | + | contig29end:31494-31513 | MsG0080048396.01.T01:CDS | 25.0% |
| ! | TAGCACTAGAAAGTTTATTA+TGG | + | contig29end:31864-31883 | MsG0080048396.01.T01:intron | 25.0% |
| ! | TTGGTTGTGTTTGAATATAA+AGG | + | contig29end:32175-32194 | MsG0080048396.01.T01:CDS | 25.0% |
| ! | TTTACTGAAAATTACTCTCT+TGG | + | contig29end:32142-32161 | MsG0080048396.01.T01:CDS | 25.0% |
| AAAAAATCGATGGTGAGATT+TGG | + | contig29end:32098-32117 | MsG0080048396.01.T01:CDS | 30.0% | |
| AAACCTCGAAATTTCTTATG+TGG | - | contig29end:32388-32407 | None:intergenic | 30.0% | |
| AAGTATGTGTACATCAAACT+TGG | - | contig29end:32206-32225 | None:intergenic | 30.0% | |
| AATATAAACACCCCTTCTAT+AGG | - | contig29end:31936-31955 | None:intergenic | 30.0% | |
| ACAGAATCAAACTTCATCAA+TGG | + | contig29end:31627-31646 | MsG0080048396.01.T01:intron | 30.0% | |
| ACATAAGAAATTTCGAGGTT+TGG | + | contig29end:32387-32406 | MsG0080048396.01.T01:intron | 30.0% | |
| AGTGTTCTATTCCTATAGAA+GGG | + | contig29end:31922-31941 | MsG0080048396.01.T01:intron | 30.0% | |
| CAGAATGTACCAAGTTTAAA+AGG | + | contig29end:32779-32798 | MsG0080048396.01.T01:intron | 30.0% | |
| GAATGTACCAAGTTTAAAAG+GGG | + | contig29end:32781-32800 | MsG0080048396.01.T01:intron | 30.0% | |
| GTAAAAATCAAAAACCCCTT+TGG | - | contig29end:31979-31998 | None:intergenic | 30.0% | |
| TACATTGCAAACATATATGC+AGG | + | contig29end:32517-32536 | MsG0080048396.01.T01:intron | 30.0% | |
| TCTCATAAAGCCTAATCATT+TGG | + | contig29end:32647-32666 | MsG0080048396.01.T01:intron | 30.0% | |
| TGAAATGCATATATGACTTG+TGG | - | contig29end:31785-31804 | None:intergenic | 30.0% | |
| TGTCTTTGAACTGATAAACA+AGG | + | contig29end:32961-32980 | MsG0080048396.01.T01:CDS | 30.0% | |
| TGTTTGCAATGTAAAACTCA+TGG | - | contig29end:32510-32529 | None:intergenic | 30.0% | |
| TTCAAATTGGGAAAAGATCA+TGG | + | contig29end:32834-32853 | MsG0080048396.01.T01:CDS | 30.0% | |
| TTCATCAATAAATTGGCCAA+GGG | + | contig29end:32567-32586 | MsG0080048396.01.T01:CDS | 30.0% | |
| ! | ATTTTCCATTTTGTGTCATC+AGG | - | contig29end:32070-32089 | None:intergenic | 30.0% |
| ! | CAATCCTTTGAAGATTAGTT+TGG | - | contig29end:31699-31718 | None:intergenic | 30.0% |
| ! | CTAATCATTTGGTAGCAAAT+CGG | + | contig29end:32658-32677 | MsG0080048396.01.T01:intron | 30.0% |
| ! | TAAAGCTCTTCATTTGTTGA+TGG | - | contig29end:31542-31561 | None:intergenic | 30.0% |
| ! | TCAATAACCCCTTTTAAACT+TGG | - | contig29end:32791-32810 | None:intergenic | 30.0% |
| ! | TGATGAATCAGTTGAGATTT+TGG | + | contig29end:32306-32325 | MsG0080048396.01.T01:CDS | 30.0% |
| AAAAGGGGTTATTGAGAACA+AGG | + | contig29end:32796-32815 | MsG0080048396.01.T01:CDS | 35.0% | |
| ACTAAGTTTACAAGGAGACA+TGG | + | contig29end:32010-32029 | MsG0080048396.01.T01:CDS | 35.0% | |
| ATTGAGAACAAGGAGAAGAA+TGG | + | contig29end:32806-32825 | MsG0080048396.01.T01:CDS | 35.0% | |
| CAACCACATAAGAAATTTCG+AGG | + | contig29end:32382-32401 | MsG0080048396.01.T01:CDS | 35.0% | |
| CAGTGTTCTATTCCTATAGA+AGG | + | contig29end:31921-31940 | MsG0080048396.01.T01:intron | 35.0% | |
| CGAAATTTCTTATGTGGTTG+AGG | - | contig29end:32382-32401 | None:intergenic | 35.0% | |
| CTTCATCAATAAATTGGCCA+AGG | + | contig29end:32566-32585 | MsG0080048396.01.T01:CDS | 35.0% | |
| GAGTAATGACTATATGATCG+TGG | - | contig29end:31580-31599 | None:intergenic | 35.0% | |
| GTGTTCTATTCCTATAGAAG+GGG | + | contig29end:31923-31942 | MsG0080048396.01.T01:intron | 35.0% | |
| TCCTCCAAACTAATCTTCAA+AGG | + | contig29end:31692-31711 | MsG0080048396.01.T01:intron | 35.0% | |
| TGTCTCCTTGTAAACTTAGT+TGG | - | contig29end:32010-32029 | None:intergenic | 35.0% | |
| TTGAGAACAAGGAGAAGAAT+GGG | + | contig29end:32807-32826 | MsG0080048396.01.T01:CDS | 35.0% | |
| ! | AGAAATTTCGAGGTTTGGTT+TGG | + | contig29end:32392-32411 | MsG0080048396.01.T01:intron | 35.0% |
| ! | CAGTTGAGATTTTGGATGAA+CGG | + | contig29end:32314-32333 | MsG0080048396.01.T01:CDS | 35.0% |
| ! | GTTCATGTTTTCAAAAGGGT+CGG | + | contig29end:33001-33020 | MsG0080048396.01.T01:CDS | 35.0% |
| ! | TTTTGGATGAACGGCTTAAT+CGG | + | contig29end:32323-32342 | MsG0080048396.01.T01:CDS | 35.0% |
| !! | AGATTTGGTTTGAAAAGGGT+TGG | + | contig29end:32113-32132 | MsG0080048396.01.T01:CDS | 35.0% |
| !! | AGTCTATTTCTACTGCATTC+TGG | - | contig29end:32231-32250 | None:intergenic | 35.0% |
| !! | CGATTTGCTACCAAATGATT+AGG | - | contig29end:32660-32679 | None:intergenic | 35.0% |
| !! | GGTGAGATTTGGTTTGAAAA+GGG | + | contig29end:32109-32128 | MsG0080048396.01.T01:CDS | 35.0% |
| !! | TCCTTTGAAGATTAGTTTGG+AGG | - | contig29end:31696-31715 | None:intergenic | 35.0% |
| !! | TGGTGAGATTTGGTTTGAAA+AGG | + | contig29end:32108-32127 | MsG0080048396.01.T01:CDS | 35.0% |
| AGACTCCTGATGACACAAAA+TGG | + | contig29end:32062-32081 | MsG0080048396.01.T01:CDS | 40.0% | |
| GAAAATTACTCTCTTGGACG+TGG | + | contig29end:32148-32167 | MsG0080048396.01.T01:CDS | 40.0% | |
| GGAATGTGAAATTGCTCTGT+TGG | + | contig29end:32855-32874 | MsG0080048396.01.T01:CDS | 40.0% | |
| GGAGGATGATCTTGAAGAAA+CGG | - | contig29end:31678-31697 | None:intergenic | 40.0% | |
| TCAAAGACACAAACATCTCC+CGG | - | contig29end:32950-32969 | None:intergenic | 40.0% | |
| TCGTTGTTTGCAAAGGAAAG+TGG | + | contig29end:32917-32936 | MsG0080048396.01.T01:CDS | 40.0% | |
| TGAGAACAAGGAGAAGAATG+GGG | + | contig29end:32808-32827 | MsG0080048396.01.T01:CDS | 40.0% | |
| TGTTGGTACAACCACACTAA+GGG | + | contig29end:32872-32891 | MsG0080048396.01.T01:CDS | 40.0% | |
| TTTACAAGGAGACATGGAGT+TGG | + | contig29end:32016-32035 | MsG0080048396.01.T01:CDS | 40.0% | |
| ! | AAGAATGGGGTGCTTCAAAT+TGG | + | contig29end:32821-32840 | MsG0080048396.01.T01:CDS | 40.0% |
| ! | ACCTTTTGCTTAGTGACCAA+AGG | + | contig29end:31960-31979 | MsG0080048396.01.T01:intron | 40.0% |
| ! | AGAATGGGGTGCTTCAAATT+GGG | + | contig29end:32822-32841 | MsG0080048396.01.T01:CDS | 40.0% |
| ! | AGTTGGTCTATCAAATCCTG+TGG | + | contig29end:32033-32052 | MsG0080048396.01.T01:CDS | 40.0% |
| ! | CCTTTTGCTTAGTGACCAAA+GGG | + | contig29end:31961-31980 | MsG0080048396.01.T01:intron | 40.0% |
| ! | CTTTTGCTTAGTGACCAAAG+GGG | + | contig29end:31962-31981 | MsG0080048396.01.T01:intron | 40.0% |
| CCCTTTGGTCACTAAGCAAA+AGG | - | contig29end:31964-31983 | None:intergenic | 45.0% | |
| CTGTTGGTACAACCACACTA+AGG | + | contig29end:32871-32890 | MsG0080048396.01.T01:CDS | 45.0% | |
| CTTGTGGAATGTGTGATGTG+TGG | - | contig29end:31769-31788 | None:intergenic | 45.0% | |
| CTTTGCAAACAACGACCAAC+CGG | - | contig29end:32912-32931 | None:intergenic | 45.0% | |
| TCAGGAGTCTTTATCACCAC+AGG | - | contig29end:32052-32071 | None:intergenic | 45.0% | |
| TGAACGGCTTAATCGGAAGA+AGG | + | contig29end:32330-32349 | MsG0080048396.01.T01:CDS | 45.0% | |
| TGATCTTGAAGAAACGGACG+AGG | - | contig29end:31672-31691 | None:intergenic | 45.0% | |
| TGTGGTTGAGGAGAAACAGA+AGG | - | contig29end:32370-32389 | None:intergenic | 45.0% | |
| ! | GAAGAGTCGCACGATTTTGT+TGG | + | contig29end:31462-31481 | MsG0080048396.01.T01:CDS | 45.0% |
| ! | TCATTTGGTAGCAAATCGGC+AGG | + | contig29end:32662-32681 | MsG0080048396.01.T01:intron | 45.0% |
| !! | AAAGGAAAGTGGACTGCAAC+CGG | + | contig29end:32928-32947 | MsG0080048396.01.T01:CDS | 45.0% |
| TGGTAGCAAATCGGCAGGTA+AGG | + | contig29end:32667-32686 | MsG0080048396.01.T01:intron | 50.0% | |
| ! | CGGTTGGTCGTTGTTTGCAA+AGG | + | contig29end:32910-32929 | MsG0080048396.01.T01:CDS | 50.0% |
| !! | AAGGAAAGTGGACTGCAACC+GGG | + | contig29end:32929-32948 | MsG0080048396.01.T01:CDS | 50.0% |
| AAAGCCAGCGACCCTTAGTG+TGG | - | contig29end:32886-32905 | None:intergenic | 55.0% | |
| ACAACCACACTAAGGGTCGC+TGG | + | contig29end:32879-32898 | MsG0080048396.01.T01:CDS | 55.0% | |
| CTCTCTTGGACGTGGCTGTT+TGG | + | contig29end:32156-32175 | MsG0080048396.01.T01:CDS | 55.0% | |
| ! | TCCTGAGCTCTAGCATCCCT+TGG | - | contig29end:32586-32605 | None:intergenic | 55.0% |
| GCCAAGGGATGCTAGAGCTC+AGG | + | contig29end:32582-32601 | MsG0080048396.01.T01:CDS | 60.0% | |
| !! | AAGGGTCGCTGGCTTTCGTC+CGG | + | contig29end:32890-32909 | MsG0080048396.01.T01:CDS | 60.0% |
| !! | GTCGCTGGCTTTCGTCCGGT+TGG | + | contig29end:32894-32913 | MsG0080048396.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig29end | gene | 31450 | 33027 | 31450 | ID=MsG0080048396.01;Name=MsG0080048396.01 |
| contig29end | mRNA | 31450 | 33027 | 31450 | ID=MsG0080048396.01.T01;Parent=MsG0080048396.01;Name=MsG0080048396.01.T01;_AED=0.30;_eAED=0.30;_QI=0|0|0|0.75|1|1|4|0|260 |
| contig29end | exon | 31450 | 31515 | 31450 | ID=MsG0080048396.01.T01:exon:578;Parent=MsG0080048396.01.T01 |
| contig29end | exon | 32001 | 32403 | 32001 | ID=MsG0080048396.01.T01:exon:577;Parent=MsG0080048396.01.T01 |
| contig29end | exon | 32539 | 32606 | 32539 | ID=MsG0080048396.01.T01:exon:576;Parent=MsG0080048396.01.T01 |
| contig29end | exon | 32782 | 33027 | 32782 | ID=MsG0080048396.01.T01:exon:575;Parent=MsG0080048396.01.T01 |
| contig29end | CDS | 31450 | 31515 | 31450 | ID=MsG0080048396.01.T01:cds;Parent=MsG0080048396.01.T01 |
| contig29end | CDS | 32001 | 32403 | 32001 | ID=MsG0080048396.01.T01:cds;Parent=MsG0080048396.01.T01 |
| contig29end | CDS | 32539 | 32606 | 32539 | ID=MsG0080048396.01.T01:cds;Parent=MsG0080048396.01.T01 |
| contig29end | CDS | 32782 | 33027 | 32782 | ID=MsG0080048396.01.T01:cds;Parent=MsG0080048396.01.T01 |
| Gene Sequence |
| Protein sequence |
